Citrus Sinensis ID: 000524
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1444 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.986 | 0.993 | 0.703 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.982 | 0.997 | 0.683 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.976 | 0.981 | 0.693 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.988 | 0.979 | 0.686 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.988 | 0.979 | 0.685 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | no | no | 0.986 | 0.986 | 0.675 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.986 | 0.982 | 0.663 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.985 | 0.971 | 0.675 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.973 | 0.957 | 0.673 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.984 | 0.986 | 0.668 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2157 bits (5590), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1022/1453 (70%), Positives = 1210/1453 (83%), Gaps = 28/1453 (1%)
Query: 1 MEGSHDSYLASTSLRGNI---------SRWRTSSVGAFSKSLREEDDEEALKWAALEKLP 51
ME ++ S L +SLRG+ S WR + V FS+S R+EDDEEALKWAALEKLP
Sbjct: 1 MEPANLSNLRGSSLRGSTRGSLRANSNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLP 60
Query: 52 TYNRLRKGLLTTSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVG 111
T++RLRKGLL S+G A EVD+++LG Q+R+ L+ +LVKV + DNEKFLLKLK+RIDRVG
Sbjct: 61 TFDRLRKGLLFGSQGAAAEVDINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVG 120
Query: 112 IDLPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDV 171
IDLP +EVRYEHLN++ +AY+ S++LP+F F T E + N L IL SRK+ LTILKD+
Sbjct: 121 IDLPTIEVRYEHLNIDADAYVGSRSLPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDI 180
Query: 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYI 231
SGIIKP RMTLLLGPP+SGKTTLLLALAGKLD +LKV+G+V+YNGH++ EFVP+RTAAYI
Sbjct: 181 SGIIKPCRMTLLLGPPSSGKTTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYI 240
Query: 232 SQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATE 291
SQHD HIGEMTVRETL FSARCQGVGSR+E+L EL+RRE A IKPD DID+YMKA ATE
Sbjct: 241 SQHDLHIGEMTVRETLEFSARCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATE 300
Query: 292 GQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEIS 351
GQEANV+TDY LK+LGL++CADTMVGD+MIRGISGG++KRVTTGEM+VGP+ ALFMDEIS
Sbjct: 301 GQEANVVTDYVLKILGLDICADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEIS 360
Query: 352 TGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREL 411
TGLDSSTT+ IVN L+Q V I GTAVISLLQPAPETY+LFDDIILLSDG IVYQGPR+
Sbjct: 361 TGLDSSTTYSIVNSLRQSVQILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDD 420
Query: 412 VLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVG 471
VLEFFESMGFKCP+RKGVADFLQEVTS+KDQ+QYW+ + +PYRF+T +EFAEA+QSFHVG
Sbjct: 421 VLEFFESMGFKCPQRKGVADFLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVG 480
Query: 472 QKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQIS 531
+K+ DEL TPFDK+K H AALT E YG GK+ELLK C RELLLMKRNSFVY+FK +Q++
Sbjct: 481 RKLGDELATPFDKTKCHPAALTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLT 540
Query: 532 SVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRD 591
+AL MTLF RT+M + + DGGIYAGALFF M+MFNG++E++MTI KLPVFYKQRD
Sbjct: 541 IMALITMTLFFRTEMPRDTTDDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRD 600
Query: 592 FRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMAS 651
FFP WAYAIPSWILKIP++ +EV +WV LTYYVIG DPN RF KQ+LL + VNQMAS
Sbjct: 601 LLFFPSWAYAIPSWILKIPVTLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMAS 660
Query: 652 ALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAI 711
+FR I A GR+M VA+TFG+FALL+ FALGGFVLSR+D+K WW W YW SPM Y+ N+I
Sbjct: 661 GMFRFIGAVGRTMGVASTFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSI 720
Query: 712 VANEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAI 771
+ NEF G W P E++G V+KSRGFF AYWYW+G+GAL GF ++FN +++A+
Sbjct: 721 LVNEFDGKKWNHIVPGGNETLGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLAL 780
Query: 772 TFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGS 831
+LN +KP+AV+ E+ E+ E+GE S S+ ++E+Q +
Sbjct: 781 AYLNPFDKPQAVLPEDGEN----------------AENGEVSSQITSTDGGDSISESQNN 824
Query: 832 HPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALM 891
K+GM+LPFEPHS+TFD+VVYSVDMPQEMK QG ED+LVLL G+SGAFRPGVLTALM
Sbjct: 825 ---KKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTALM 881
Query: 892 GVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 951
GVSGAGKTTLMDVL+GRKTGGYI G I ISGYPKKQETFARISGYCEQNDIHSP+VTVYE
Sbjct: 882 GVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQETFARISGYCEQNDIHSPYVTVYE 941
Query: 952 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAV 1011
SL+YSAWLRLP +VD +TRKMF++EVMELVEL PL +LVGLPGV+GLSTEQRKRLTIAV
Sbjct: 942 SLVYSAWLRLPQDVDEKTRKMFVDEVMELVELGPLRSALVGLPGVNGLSTEQRKRLTIAV 1001
Query: 1012 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1071
ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDELFL
Sbjct: 1002 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1061
Query: 1072 MKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFN 1131
MKRGGQEIYVGPLGRHSC LI YFE+ PGV KIK+GYNPATWMLEVTAS+QE+ LG+DF
Sbjct: 1062 MKRGGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFT 1121
Query: 1132 DIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQY 1191
++++ S+LYRRNKALI EL P PGSKDL+F TQYSQS +TQ +ACLWKQHWSYWRNP Y
Sbjct: 1122 EVYKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAY 1181
Query: 1192 TAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSV 1251
TAVRF FT FIA++ G++FWD+G+K KSQDL NAMGSM+ A++FLG+Q SSVQPVV++
Sbjct: 1182 TAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAI 1241
Query: 1252 ERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFF 1311
ERTVFYRE+AAGMYS +P+A Q IEIPYIFVQSV Y +IVYAM+G++W KF WY F
Sbjct: 1242 ERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLF 1301
Query: 1312 FMYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWA 1371
M+ TLL FTFYGM+ VA+TPN ++A+IV+ FYG+W LF GF+IPRPR+PVWWRWYYWA
Sbjct: 1302 IMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWA 1361
Query: 1372 NPVAWTLYGLIASQFGDVEDQMENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFV 1431
NPVAWTLYGL+ASQFGD++ ++ + ETV+ FLR YFGFKHDFLG+VA VLT +V +F F
Sbjct: 1362 NPVAWTLYGLVASQFGDIQTKLSDNETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFT 1421
Query: 1432 FALGIKQLNFQRR 1444
FA IK NFQRR
Sbjct: 1422 FAFAIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2092 bits (5420), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 990/1448 (68%), Positives = 1184/1448 (81%), Gaps = 29/1448 (2%)
Query: 1 MEGSHDSYLASTSLRGNISRWRTSS-VGAFSKSLREEDDEEALKWAALEKLPTYNRLRKG 59
MEG+ + AS S+R N S W+ S FS+S REEDDEEAL+WAALEKLPT++RLRKG
Sbjct: 1 MEGT-SFHQASNSMRRNSSVWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKG 59
Query: 60 LLTTSR--GEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKV 117
+LT S G E+D+ LG Q ++L+ +L+KV + ++EK L KLK RIDRVGIDLP +
Sbjct: 60 ILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTI 119
Query: 118 EVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKP 177
EVR++HL VE E ++ +ALP+F F + + N L ++P+RKK TIL DVSGI+KP
Sbjct: 120 EVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKP 179
Query: 178 GRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNH 237
GRM LLLGPP+SGKTTLLLALAGKLD LK +GRVTYNGH M EFVP+RTAAYI Q+D H
Sbjct: 180 GRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVH 239
Query: 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRET A++AR QGVGSRY++LTELARRE EA IKPDPDID++MKA++T G++ NV
Sbjct: 240 IGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNV 299
Query: 298 ITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGLEVCADTMVGD+M+RGISGG++KRVTTGEM+VGP+ ALFMDEISTGLDSS
Sbjct: 300 MTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSS 359
Query: 358 TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFE 417
TT+QIVN L+ +VHI +GTA+ISLLQPAPET++LFDDIIL+++G+I+Y+GPR+ V+EFFE
Sbjct: 360 TTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFE 419
Query: 418 SMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDE 477
+MGFKCP RKGVADFLQEVTS+KDQ QYW +++PYRF+ V EFAEAFQSFHVG++I DE
Sbjct: 420 TMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDE 479
Query: 478 LRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAF 537
L PFDK+KSH AALTT+ YG G +EL+KT SRE LLMKRNSFVY FK Q+ +A
Sbjct: 480 LALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLT 539
Query: 538 MTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPP 597
MTLF RT+M K + DG +Y GALFF M+MFNG++E+SMTIAKLPVFYKQRD F+P
Sbjct: 540 MTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPA 599
Query: 598 WAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLI 657
W Y++P W+LKIPISF+E A+ F+TYYVIG DPN GR FKQY+L + +NQMASALF+++
Sbjct: 600 WVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMV 659
Query: 658 AATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFL 717
AA GR+M+VANTFG FA+LV FALGG VLSR+DIKKWW W YW SP+ Y QNAI+ANEF
Sbjct: 660 AALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFF 719
Query: 718 GYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQL 777
G+SW + NS E++GV LKSRGF HAYWYW+G GAL GF++LFN GFT+A+TFLN L
Sbjct: 720 GHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSL 779
Query: 778 EKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRG 837
KP+AVI EE S++ + + SAR E + EA + KKRG
Sbjct: 780 GKPQAVIAEEPASDETELQ-------SARSEG---------------VVEAGAN--KKRG 815
Query: 838 MILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAG 897
M+LPFEPHS+TFD VVYSVDMPQEM QG ED+LVLL G++GAFRPGVLTALMGVSGAG
Sbjct: 816 MVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAG 875
Query: 898 KTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 957
KTTLMDVL+GRKTGGYI GNITISGYPK Q+TFARISGYCEQ DIHSP VTVYESL+YSA
Sbjct: 876 KTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSA 935
Query: 958 WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1017
WLRLP EVD RK+FIEEVMELVEL PL Q+LVGLPG SGLSTEQRKRLTIAVELVANP
Sbjct: 936 WLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANP 995
Query: 1018 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077
SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDELFL+KRGG+
Sbjct: 996 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGE 1055
Query: 1078 EIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCS 1137
EIYVGPLG S LI+YFE+I G+ KI +GYNPATWMLEV+ +SQE ALGVDF +++ S
Sbjct: 1056 EIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNS 1115
Query: 1138 ELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFF 1197
ELY+RNK LI+ELS+P PGSKDLYFPTQYSQS TQ MA LWKQHWSYWRNP YTAVRF
Sbjct: 1116 ELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFL 1175
Query: 1198 FTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFY 1257
FT IA++ G++FWD+G KT+ QDL NAMGSM+TA++FLGLQ +SVQPVV+VERTVFY
Sbjct: 1176 FTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFY 1235
Query: 1258 REKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITL 1317
RE+AAGMYS +P+A AQ IEIPY+ VQ++VY +IVYAM+G++WTA KF WY FFMY +
Sbjct: 1236 REQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSF 1295
Query: 1318 LLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWT 1377
L FTFYGM+ VA+TPNHHIA++VS+ FYGIW LF GF+IPRP +PVWW WYYW PVAWT
Sbjct: 1296 LTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWT 1355
Query: 1378 LYGLIASQFGDVEDQMENGE-TVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGI 1436
LYGLIASQFGD+ + M + +VK F+R+++G++ FLG+VA + F LF +FA+GI
Sbjct: 1356 LYGLIASQFGDITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGI 1415
Query: 1437 KQLNFQRR 1444
K NFQ+R
Sbjct: 1416 KSFNFQKR 1423
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2041 bits (5288), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 997/1438 (69%), Positives = 1199/1438 (83%), Gaps = 28/1438 (1%)
Query: 13 SLRGNI-----SRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRGE 67
S+RG+I S WR + FS+S R+EDDEEALKWAALEKLPTY+RLRKG+L S+G
Sbjct: 21 SMRGSIRENSNSIWRNNGAEVFSRSARDEDDEEALKWAALEKLPTYDRLRKGILFGSQGA 80
Query: 68 AFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVE 127
A EVDV + G+ +R+ L+ +LVKV + DNEKFLLKLK+RIDRVGID P +EVR+EHLN++
Sbjct: 81 AAEVDVDDSGVLERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDFPSIEVRFEHLNID 140
Query: 128 GEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPP 187
+AY+ S+ALP+FT F + E + + + ILPS+K+ +TILKDVSGI+KP RMTLLLGPP
Sbjct: 141 ADAYVGSRALPTFTNFISNFVEGLLDSIHILPSKKRQVTILKDVSGIVKPCRMTLLLGPP 200
Query: 188 ASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETL 247
SGKTTLLLALAGKLDS+LKV+G+VTYNGH++ EFVP+RTAAYISQHD HIGEMTVRETL
Sbjct: 201 GSGKTTLLLALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETL 260
Query: 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307
FSARCQGVGSRYE+L EL+RRE A IKPD DID++MKA +TEGQEA V+TDY LK+LG
Sbjct: 261 EFSARCQGVGSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVTDYILKILG 320
Query: 308 LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLK 367
L++CADTMVGD+MIRGISGG++KRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN LK
Sbjct: 321 LDICADTMVGDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTTYSIVNSLK 380
Query: 368 QHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRK 427
Q V I GTA+ISLLQPAPETY+LFDDIILLSDG IVY+GPRE VLEFFESMGFKCP+RK
Sbjct: 381 QSVRIMKGTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESMGFKCPERK 440
Query: 428 GVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKS 487
G ADFLQEVTS+KDQ+QYW +++PYRF+T +EFAEA+QSFHVG+K+SDEL+T FDKSKS
Sbjct: 441 GAADFLQEVTSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELKTTFDKSKS 500
Query: 488 HRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMH 547
H AALTT+ YG GKR+LLK C RELLLM+RNSFVY+FK Q+ +AL MT+F RTKM
Sbjct: 501 HPAALTTQKYGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMTIFFRTKMP 560
Query: 548 KHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWIL 607
+ S DGGIY+GALFF M+MFNGL+E+ MT+ KLPVFYKQRDF F+P WAYAIPSWIL
Sbjct: 561 RDSAEDGGIYSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWAYAIPSWIL 620
Query: 608 KIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVA 667
KIP++F EV +WVFLTYYV+G DPN GRFFKQ+LL L VNQMASALFR IAA GR+M VA
Sbjct: 621 KIPVTFAEVGMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAAVGRTMGVA 680
Query: 668 NTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPN 727
+TFG FALL+ FALGGF+L+R D+K WW W YW SP+ Y+ NAI+ NEF G WK
Sbjct: 681 STFGAFALLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAG 740
Query: 728 SYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEE 787
E +G V+++RGFF AYWYW+G+GAL GFI++FN+ +++A+ +LN +KP+A I++E
Sbjct: 741 GTEPLGAAVVRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDKPQATISDE 800
Query: 788 SESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSL 847
SE+N+ ++ + + + G+S S KK+GM+LPF+PHS+
Sbjct: 801 SENNESESSPQ--ITSTQEGDS--------------------ASENKKKGMVLPFDPHSI 838
Query: 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG 907
TFDEVVYSVDMP EM+ G +++LVLL +SGAFRPGVLTALMGVSGAGKTTLMDVL+G
Sbjct: 839 TFDEVVYSVDMPPEMRESGTSDNRLVLLKSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 898
Query: 908 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDS 967
RKTGGYI G+I ISGYPKKQ+TFARISGYCEQNDIHSP+VTV+ESL+YSAWLRLP +V+
Sbjct: 899 RKTGGYIDGSIKISGYPKKQDTFARISGYCEQNDIHSPYVTVFESLVYSAWLRLPQDVNE 958
Query: 968 ETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027
E R MF+EEVM+LVEL PL +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTS
Sbjct: 959 EKRMMFVEEVMDLVELTPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1018
Query: 1028 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRH 1087
GLDARAAAIVMR VRNTVDTGRTVVCTIHQP IDIF+AFDELFLMKRGGQEIYVGPLGR
Sbjct: 1019 GLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRQ 1078
Query: 1088 SCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALI 1147
SC LI YFE+IPGV KI +GYNPATWMLEVTASSQE+ALGVDF D+++ S+LYRRNKALI
Sbjct: 1079 SCHLIKYFESIPGVSKIVEGYNPATWMLEVTASSQEMALGVDFTDLYKKSDLYRRNKALI 1138
Query: 1148 EELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLG 1207
+ELS P PG+ DL+F +++SQ +TQ MACLWKQHWSYWRNP YTAVR FT FIA++ G
Sbjct: 1139 DELSVPRPGTSDLHFDSEFSQPFWTQCMACLWKQHWSYWRNPAYTAVRLIFTTFIALIFG 1198
Query: 1208 SLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSG 1267
++FWD+G+K ++QDL NAMGSM+ A++FLG+Q SSVQPVVSVERTVFYREKAAGMYS
Sbjct: 1199 TMFWDIGTKVSRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYSA 1258
Query: 1268 LPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLT 1327
+P+A AQ +IEIPYIFVQ+ VY +IVY+M+G++WT KF W FFFM+ T L FTF+GM+T
Sbjct: 1259 IPYAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMT 1318
Query: 1328 VAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFG 1387
VA+TPN ++A+IV+ FY +W LF GF++PRPRIP+WWRWYYW P+AWTLYGL+ASQFG
Sbjct: 1319 VAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFG 1378
Query: 1388 DVEDQM-ENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1444
D++D + + +TV+ FLR FGFKHDFLG+VA V+ F +F F FALGIK NFQRR
Sbjct: 1379 DLQDPLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2033 bits (5267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 992/1445 (68%), Positives = 1153/1445 (79%), Gaps = 18/1445 (1%)
Query: 13 SLRGNI-SRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLL-------TTS 64
S+RG+ S WR FS+S REEDDEEAL+WAALEKLPTY+R+R+ +L
Sbjct: 18 SMRGDSGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGD 76
Query: 65 RGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHL 124
G VDV LG ++R+ L+ +LV+V + DNEKFLLKLK R+DRVGID+P +EVR+EHL
Sbjct: 77 GGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHL 136
Query: 125 NVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLL 184
E E + + LP+ T E+ N LGILP+RK+ + +L DVSGIIKP RMTLLL
Sbjct: 137 EAEAEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLL 196
Query: 185 GPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244
GPP SGKTTLLLALAG+L LK SG+VTYNGH M EFVPERTAAYISQHD HIGEMTVR
Sbjct: 197 GPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVR 256
Query: 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304
ETLAFSARCQGVGSR+++LTEL+RRE A IKPD DID +MKA A GQEANV TDY LK
Sbjct: 257 ETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILK 316
Query: 305 VLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN 364
+LGLE+CADTMVGDEM+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN
Sbjct: 317 ILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVN 376
Query: 365 CLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCP 424
L+Q VHI GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFFESMGFKCP
Sbjct: 377 SLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCP 436
Query: 425 KRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDK 484
RKGVADFLQEVTS+KDQ+QYW +KPYRFVTV+EF AFQSFH G+ I++EL PFDK
Sbjct: 437 DRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDK 496
Query: 485 SKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRT 544
SKSH AAL T YGA +ELLK I RE+LLMKRNSFVY+F+ Q+ V+L MTLF RT
Sbjct: 497 SKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRT 556
Query: 545 KMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPS 604
KM + S+T GGIY GALFF M+MFNG +E+++T+ KLPVF+KQRD F+P W+Y IPS
Sbjct: 557 KMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPS 616
Query: 605 WILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSM 664
WILKIPI+F+EV +VFLTYYVIG D N G FFKQYLL LA+NQMA +LFR I R+M
Sbjct: 617 WILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNM 676
Query: 665 VVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKF 724
+VAN F +F LL+ LGGF+L+RE +KKWW W YW SPM YAQNAI NE +G+SW K
Sbjct: 677 IVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKI 736
Query: 725 --TPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRA 782
+ S E++GVQVLKSRG F A WYW+G GA+ GF +LFN FT+A+T+L R
Sbjct: 737 VNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQ 796
Query: 783 VITEESESNKQDN---RIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMI 839
++EE K+ N I G V LS+ S G + + S I+ + + +RGM+
Sbjct: 797 SVSEEELKEKRANLNGEIVGDVHLSS--GSTRRPMGNGTENDSTIVDD--DTEVTQRGMV 852
Query: 840 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT 899
LPF P SL+FD V YSVDMPQEMK QGV +D+L LL G+SG+FRPGVLTALMGVSGAGKT
Sbjct: 853 LPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKT 912
Query: 900 TLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWL 959
TLMDVL+GRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VTVYESLL+SAWL
Sbjct: 913 TLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWL 972
Query: 960 RLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1019
RLP +VDS TRKMFIEEVMELVELK L +LVGLPGV+GLSTEQRKRLTIAVELVANPSI
Sbjct: 973 RLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1032
Query: 1020 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1079
IFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQP IDIF+AFDELFLMKRGG+EI
Sbjct: 1033 IFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEI 1092
Query: 1080 YVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSEL 1139
Y GPLG HS +LI YFE+IPGV KIKDGYNPATWMLEVT QE ALGVDF+DI++ SEL
Sbjct: 1093 YAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSEL 1152
Query: 1140 YRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFT 1199
Y+RNKALI++LS+P P S DLYFPTQYSQS+ TQ MACLWKQ+ SYWRNP Y AVRFFFT
Sbjct: 1153 YQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFT 1212
Query: 1200 AFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYRE 1259
IA+L G++FWD+G K KSQDLFNAMGSM+ A++F+G+ C+SVQPVV+VERTVFYRE
Sbjct: 1213 TVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRE 1272
Query: 1260 KAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLL 1319
+AAGMYS P+A Q +IEIPY VQ+ VY +IVYAM+G++WTA KF WY FFM TLL
Sbjct: 1273 RAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLY 1332
Query: 1320 FTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLY 1379
FTFYGM+ V +TPN+HIA+IVS+ FY IW LF GFVIPRPR+P+WWRWY WA PVAWTLY
Sbjct: 1333 FTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLY 1392
Query: 1380 GLIASQFGDVEDQMENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQL 1439
GL+ SQFGD+E ME+G VK F+ +YFGFKH +LG VA V+ F LF +F I +
Sbjct: 1393 GLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKF 1452
Query: 1440 NFQRR 1444
NFQ+R
Sbjct: 1453 NFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2031 bits (5261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 991/1445 (68%), Positives = 1152/1445 (79%), Gaps = 18/1445 (1%)
Query: 13 SLRGNI-SRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLL-------TTS 64
S+RG+ S WR FS+S REEDDEEAL+WAALEKLPTY+R+R+ +L
Sbjct: 18 SMRGDSGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGD 76
Query: 65 RGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHL 124
G VDV LG ++R+ L+ +LV+V + DNEKFLLKLK R+DRVGID+P +EVR+EHL
Sbjct: 77 GGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHL 136
Query: 125 NVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLL 184
E E + + LP+ T E+ N LGILP+RK+ + +L DVSGIIKP RMTLLL
Sbjct: 137 EAEAEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLL 196
Query: 185 GPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244
GPP SGKTTLLLALAG+L LK SG+VTYNGH M EFVPERTAAYISQHD HIGEMTVR
Sbjct: 197 GPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVR 256
Query: 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304
ETLAFSARCQGVGSR+++LTEL+RRE A IKPD DID +MKA A GQEANV TDY LK
Sbjct: 257 ETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILK 316
Query: 305 VLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN 364
+LGLE+CADTMVGDEM+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN
Sbjct: 317 ILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVN 376
Query: 365 CLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCP 424
L+Q VHI GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFFES GFKCP
Sbjct: 377 SLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCP 436
Query: 425 KRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDK 484
RKGVADFLQEVTS+KDQ+QYW +KPYRFVTV+EF AFQSFH G+ I++EL PFDK
Sbjct: 437 DRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDK 496
Query: 485 SKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRT 544
SKSH AAL T YGA +ELLK I RE+LLMKRNSFVY+F+ Q+ V+L MTLF RT
Sbjct: 497 SKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRT 556
Query: 545 KMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPS 604
KM + S+T GGIY GALFF M+MFNG +E+++T+ KLPVF+KQRD F+P W+Y IPS
Sbjct: 557 KMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPS 616
Query: 605 WILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSM 664
WILKIPI+F+EV +VFLTYYVIG D N G FFKQYLL LA+NQMA +LFR I R+M
Sbjct: 617 WILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNM 676
Query: 665 VVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKF 724
+VAN F +F LL+ LGGF+L+RE +KKWW W YW SPM YAQNAI NE +G+SW K
Sbjct: 677 IVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKI 736
Query: 725 --TPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRA 782
+ S E++GVQVLKSRG F A WYW+G GA+ GF +LFN FT+A+T+L R
Sbjct: 737 VNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQ 796
Query: 783 VITEESESNKQDN---RIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMI 839
++EE K+ N I G V LS+ S G + + S I+ + + +RGM+
Sbjct: 797 SVSEEELKEKRANLNGEIVGDVHLSS--GSTRRPMGNGTENDSTIVDD--DTEVTQRGMV 852
Query: 840 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT 899
LPF P SL+FD V YSVDMPQEMK QGV +D+L LL G+SG+FRPGVLTALMGVSGAGKT
Sbjct: 853 LPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKT 912
Query: 900 TLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWL 959
TLMDVL+GRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VTVYESLL+SAWL
Sbjct: 913 TLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWL 972
Query: 960 RLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1019
RLP +VDS TRKMFIEEVMELVELK L +LVGLPGV+GLSTEQRKRLTIAVELVANPSI
Sbjct: 973 RLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1032
Query: 1020 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1079
IFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQP IDIF+AFDELFLMKRGG+EI
Sbjct: 1033 IFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEI 1092
Query: 1080 YVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSEL 1139
Y GPLG HS +LI YFE+IPGV KIKDGYNPATWMLEVT QE ALGVDF+DI++ SEL
Sbjct: 1093 YAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSEL 1152
Query: 1140 YRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFT 1199
Y+RNKALI++LS+P P S DLYFPTQYSQS+ TQ MACLWKQ+ SYWRNP Y AVRFFFT
Sbjct: 1153 YQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFT 1212
Query: 1200 AFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYRE 1259
IA+L G++FWD+G K KSQDLFNAMGSM+ A++F+G+ C+SVQPVV+VERTVFYRE
Sbjct: 1213 TVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRE 1272
Query: 1260 KAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLL 1319
+AAGMYS P+A Q +IEIPY VQ+ VY +IVYAM+G++WTA KF WY FFM TLL
Sbjct: 1273 RAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLY 1332
Query: 1320 FTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLY 1379
FTFYGM+ V +TPN+HIA+IVS+ FY IW LF GFVIPRPR+P+WWRWY WA PVAWTLY
Sbjct: 1333 FTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLY 1392
Query: 1380 GLIASQFGDVEDQMENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQL 1439
GL+ SQFGD+E ME+G VK F+ +YFGFKH +LG VA V+ F LF +F I +
Sbjct: 1393 GLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKF 1452
Query: 1440 NFQRR 1444
NFQ+R
Sbjct: 1453 NFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2015 bits (5221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 970/1437 (67%), Positives = 1179/1437 (82%), Gaps = 12/1437 (0%)
Query: 13 SLRGNISRWRTSS--VGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFE 70
S+R S WR +S AF +S+REEDDEEALKWAA+EKLPTY+R+RKG+LT G E
Sbjct: 15 SVRRTASSWRGTSGRSDAFGRSVREEDDEEALKWAAIEKLPTYDRMRKGILTA--GGVEE 72
Query: 71 VDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEA 130
VD+ LGLQ+R+ LI +LV+ E DNE+FLLKL+ R++RVGID P +EVR+E+L+++ EA
Sbjct: 73 VDIGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIEVRFENLSIDAEA 132
Query: 131 YLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASG 190
Y+ ++ +P+FT F++ D+ + + I+ S K+ ++IL D+SGII+PGRM+LLLGPP SG
Sbjct: 133 YVGNRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISILHDISGIIRPGRMSLLLGPPGSG 192
Query: 191 KTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFS 250
KT+LLLALAGKLDS+LKVSGRVTYNGHDM EFVP+RT+AYI QHD HIGEMTVRETLAFS
Sbjct: 193 KTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFS 252
Query: 251 ARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV 310
ARCQGVG+RY++LTEL+RRE EA IKPDPDIDVYMKAI+ EGQE+ V+TDY LK+LGLE+
Sbjct: 253 ARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQES-VVTDYILKILGLEI 311
Query: 311 CADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHV 370
CADTMVGD MIRGISGG++KRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN L+Q V
Sbjct: 312 CADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSV 371
Query: 371 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVA 430
HI GTA+I+LLQPAPETYDLFDDI+LLS+GQIVYQGPRE +LEFFE+MGFKCP+RKGVA
Sbjct: 372 HILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVA 431
Query: 431 DFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRA 490
DFLQEVTSRKDQ QYW +++PYR+++V +F+EAF+ FHVG+ + ELR PFD++++H A
Sbjct: 432 DFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPA 491
Query: 491 ALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHS 550
ALTT YG K EL K C SRE LLMKRNSFVYIFK+ Q+ + MT+FLRTKMH+ S
Sbjct: 492 ALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRS 551
Query: 551 LTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIP 610
+ DG I+ GA+F +FNG AE++M+IAKLP+FYKQRD F+P WAYA+P+W+LKIP
Sbjct: 552 VEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIP 611
Query: 611 ISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF 670
ISFLE AVW+ +TYYV+G DPN RFF+ Y+L + ++QMAS LFRL+AA GR MVVA+TF
Sbjct: 612 ISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTF 671
Query: 671 GTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTP--NS 728
G+FA L+L LGGF++SRE+IKKWW W YW SP+ YAQNAI NEFLG+SW K S
Sbjct: 672 GSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQS 731
Query: 729 YESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEES 788
+++GVQVLK RG F A WYW+G+GAL G+I+LFN+ F + + +L+ L K +AV++EE
Sbjct: 732 NDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEE 791
Query: 789 ESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLT 848
K NR V+L G ++ ++ + E G+ +KRGM+LPF P S+T
Sbjct: 792 LREKHVNRTGENVELLTLGTDSQNSPSDANAGRG----EITGADTRKRGMVLPFTPLSIT 847
Query: 849 FDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 908
FD + YSVDMPQEMK +GV ED+L+LL G+SGAFRPGVLTALMGVSGAGKTTLMDVL+GR
Sbjct: 848 FDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 907
Query: 909 KTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSE 968
KTGGYI G+I+ISGYPKKQETFARI+GYCEQNDIHSP VTVYESLLYSAWLRLP EVDSE
Sbjct: 908 KTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDSE 967
Query: 969 TRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028
RKMF+EEVMELVEL L +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSG
Sbjct: 968 ARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1027
Query: 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHS 1088
LDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDELFLMKRGG+EIYVGPLG +S
Sbjct: 1028 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNS 1087
Query: 1089 CQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIE 1148
C LI+YFE I GV KIKDGYNPATWMLEVT +QE LG++F +++R S+LY+RNK LI
Sbjct: 1088 CHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILGINFAEVYRNSDLYQRNKTLIS 1147
Query: 1149 ELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGS 1208
ELS P PGS DL+FPTQ+SQ FTQ MACLWKQH SYWRNP YTA R FFT IA++ G+
Sbjct: 1148 ELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRNPSYTATRIFFTTVIALIFGT 1207
Query: 1209 LFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGL 1268
+F ++G K K DLFN++GSM+ A++F+G+Q +VQP+V VERTVFYREKAAGMYS L
Sbjct: 1208 IFLNLGKKINKRLDLFNSLGSMYAAVLFIGIQNGQTVQPIVDVERTVFYREKAAGMYSAL 1267
Query: 1269 PWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTV 1328
P+A AQ +IEIP+IF+Q+VVY +IVY+++G+DWT EKF WY FFM+ T + FTFYGM+ V
Sbjct: 1268 PYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMAV 1327
Query: 1329 AITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGD 1388
A+TPN IAAIVST FY IW +F GF+IPRPRIP+WWRWY WA PVAWTLYGL+ASQ+GD
Sbjct: 1328 AMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVASQYGD 1387
Query: 1389 VEDQ-MENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1444
+ + +E+GE V+ ++R YFGF+HD+LG VA + F ALF FVFA IK NFQRR
Sbjct: 1388 ITNSTLEDGEVVQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQRR 1444
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1998 bits (5177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 961/1449 (66%), Positives = 1155/1449 (79%), Gaps = 25/1449 (1%)
Query: 13 SLRGNISRWRTSSVGAFSKSLR----EEDDEEALKWAALEKLPTYNRLRKGLLTTSR--- 65
SLR S WR+ FS+S E+DDEEAL+WAALE+LPTY+R+R+G+L S
Sbjct: 10 SLRREGSMWRSGG-DVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDG 68
Query: 66 ---GEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYE 122
GE EVDV LG ++ + LI +LV+ + D+E+FLLKL+ R+DRVGID P +EVR+E
Sbjct: 69 GAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFE 128
Query: 123 HLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTL 182
+L VE + ++ ++ LP+ T E I N L ILP++K+ +T+L DVSGIIKP RMTL
Sbjct: 129 NLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTL 188
Query: 183 LLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMT 242
LLGPP SGKTTLLLALAGKLD LKVSG+VTYNGH M EFVPERTAAYISQHD HIGEMT
Sbjct: 189 LLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMT 248
Query: 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVG+RYE+LTELARRE A IKPD DID+YMKA A GQE++V+TDY
Sbjct: 249 VRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYI 308
Query: 303 LKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGL++CADT+VG+EM+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSSTT+QI
Sbjct: 309 LKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQI 368
Query: 363 VNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFK 422
VN L+Q +HI GTAVISLLQPAPETY+LFDDIILLSDGQ+VYQGPRE VLEFFE MGF+
Sbjct: 369 VNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFR 428
Query: 423 CPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPF 482
CP RKGVADFLQEVTSRKDQ QYW +++PYRFV V++FA+AF+SFHVG+ I +EL PF
Sbjct: 429 CPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPF 488
Query: 483 DKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFL 542
D+++SH AAL T YG ++ELLK I RELLLMKRN+F+YIFK ++ +AL MT F
Sbjct: 489 DRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFF 548
Query: 543 RTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT M +H G IY GAL+FA VMFNG AE++MT+ KLPVF+KQRD FFP WAY I
Sbjct: 549 RTSM-RHDRDYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTI 607
Query: 603 PSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGR 662
PSWIL+IPI+FLEV V+VF+TYYVIG DP+ RFFKQYLL LA+NQM+SALFR IA GR
Sbjct: 608 PSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGR 667
Query: 663 SMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWK 722
MVV++TFG +LL ALGGF+L+R D+KKWW W YW SP+SYAQNAI NEFLG+SW
Sbjct: 668 DMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWS 727
Query: 723 KFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRA 782
+ P ++GV VLKSRG F A WYW+GLGAL G+ LLFNL +T+A++ L+ A
Sbjct: 728 QILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHA 787
Query: 783 VITEESESNKQDNR----IRGTVQLSARGESGE--DISGRNSSSKSLILTEAQGSHPKKR 836
++E++ K N + G +R + E I+ +NS S S ++
Sbjct: 788 SMSEDALKEKHANLTGEVVEGQKDTKSRKQELELSHIADQNSGINS------ADSSASRK 841
Query: 837 GMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGA 896
GM+LPF P S++F++V YSVDMP+ MK QG+ ED+L+LL G+SG+FRPGVLTALMGVSGA
Sbjct: 842 GMVLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGA 901
Query: 897 GKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYS 956
GKTTLMDVL+GRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VTVYESL++S
Sbjct: 902 GKTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFS 961
Query: 957 AWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVAN 1016
AWLRLP EVDSE RKMFIEEVM+LVEL L +LVGLPGVSGLSTEQRKRLTIAVELVAN
Sbjct: 962 AWLRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVAN 1021
Query: 1017 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076
PSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQP IDIF+AFDELFLMKRGG
Sbjct: 1022 PSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1081
Query: 1077 QEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRC 1136
+EIYVGP+G++S +LI YFE I GV +IKDGYNPATWMLEVT+S+QE LGVDF++I+R
Sbjct: 1082 EEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQ 1141
Query: 1137 SELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRF 1196
SELY+RNK LIEELS P PGS DL FPTQYS+S TQ +ACLWKQ+WSYWRNP YTAVR
Sbjct: 1142 SELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRL 1201
Query: 1197 FFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVF 1256
FT IA++ G++FW++G++T+K QDLFNAMGSM+ A++++G+Q SVQPVV VERTVF
Sbjct: 1202 LFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVF 1261
Query: 1257 YREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYIT 1316
YRE+AAGMYS P+A Q IE+PYI VQ+++Y V+VY+M+G++WT KF WY FFMY T
Sbjct: 1262 YRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFT 1321
Query: 1317 LLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAW 1376
LL FTFYGM+ V +TPN IAAI+S+ FY +W LF G++IPRP+IPVWWRWY W PVAW
Sbjct: 1322 LLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAW 1381
Query: 1377 TLYGLIASQFGDVEDQME-NGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALG 1435
TLYGL+ASQFGD++ +E + TV F+ DYFGF H+FL +VA V F F F+F+
Sbjct: 1382 TLYGLVASQFGDIQHVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFA 1441
Query: 1436 IKQLNFQRR 1444
I + NFQRR
Sbjct: 1442 IMKFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1985 bits (5143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 973/1441 (67%), Positives = 1142/1441 (79%), Gaps = 18/1441 (1%)
Query: 19 SRWRTSSVGAFSKSLRE------EDDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFE-- 70
S W ++ G FS+S EDDEEAL+WAALEKLPTY+R+R+ +L
Sbjct: 27 SMWWSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGGGE 86
Query: 71 -----VDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLN 125
VDV +LG Q+R+ L+ +LV+V E DNE+FLLKLK RIDRVGID+P +EVR+EHL
Sbjct: 87 AGKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEHLE 146
Query: 126 VEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLG 185
E E + + LP+ T E N LGILP++K+ + IL DVSGI+KP RMTLLLG
Sbjct: 147 AEAEVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLLLG 206
Query: 186 PPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRE 245
PP SGKTTLLLALAG+L +K SG+VTYNGH M +FVP+RTAAYISQHD HIGEMTVRE
Sbjct: 207 PPGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRE 266
Query: 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKV 305
TL+FSARCQGVGSR+++LTEL+RRE A IKPD DID +MKA A EGQE N+ITDY LK+
Sbjct: 267 TLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYILKI 326
Query: 306 LGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC 365
LGL++CADTMVGD+M+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIV
Sbjct: 327 LGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVKS 386
Query: 366 LKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPK 425
L+Q +HI GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRE VLEFFE MGFKCP+
Sbjct: 387 LRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKCPE 446
Query: 426 RKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKS 485
RKGVADFLQEVTSRKDQKQYW +KPYR+V V++FA AFQSFH G+ I++EL TPFDKS
Sbjct: 447 RKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFDKS 506
Query: 486 KSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTK 545
K+H AALTT YG ELLK I RE LLMKRNSFVYIF+ Q+ V+ MT+F RTK
Sbjct: 507 KNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFRTK 566
Query: 546 MHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSW 605
MH+ S+TDG I+ GALFF+ M+MFNGL+E+ +TI KLPVF+KQRD FFP W Y IPSW
Sbjct: 567 MHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSW 626
Query: 606 ILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMV 665
ILKIP+SF+EV +VF++YYVIG DP+AGRFFKQYLL LA+NQMA+ALFR + R+M+
Sbjct: 627 ILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARNMI 686
Query: 666 VANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFT 725
VAN FG+F LL+ LGGF+L RE +KKWW W YW SPM YAQNAI NEFLG+SW K
Sbjct: 687 VANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDKVL 746
Query: 726 PNSY--ESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAV 783
NS E++GVQ L+SRG F A WYW+G GAL GFI+LFN FT+A+T+L K +
Sbjct: 747 NNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQPS 806
Query: 784 ITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFE 843
++EE KQ N + + S N+ + S I A S P +RGM+LPF
Sbjct: 807 VSEEELKEKQANINGNVLDVDTMASSTNLAIVDNTETSSEI---ADNSQPTQRGMVLPFA 863
Query: 844 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMD 903
P SLTFD + YSVDMPQEMK G++ED+L LL G+SG+FRPGVLTALMGVSGAGKTTLMD
Sbjct: 864 PLSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMD 923
Query: 904 VLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 963
VL+GRKTGGYI GNITISGYPKKQETFAR+SGYCEQNDIHSP VTV ESLL+SAWLRLP
Sbjct: 924 VLAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPK 983
Query: 964 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
+VDS TRKMFIEEVMELVELKPL +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 984 DVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1043
Query: 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083
EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDELFLMKRGG+EIYVGP
Sbjct: 1044 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGP 1103
Query: 1084 LGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRN 1143
LG S +LI YFE I GV +IKDGYNPATWMLEV+ SQE ALGVDF DI+R SEL++RN
Sbjct: 1104 LGHQSSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFCDIYRKSELFQRN 1163
Query: 1144 KALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIA 1203
KALI+ELS P PGS +LYFPT+YS S Q +ACLWK H SYWRNP Y A+R FFT IA
Sbjct: 1164 KALIQELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIA 1223
Query: 1204 VLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAG 1263
+L G++FWD+G KT KSQDLFNAMGSM++A++F+G+ SVQPVVSVERTVFYRE+AAG
Sbjct: 1224 LLFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAG 1283
Query: 1264 MYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFY 1323
MYS P+A Q IE PY VQS++Y +IVY+M+G+ WTA KF WY FFM+ T L FTFY
Sbjct: 1284 MYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFY 1343
Query: 1324 GMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIA 1383
GM+ V +TP++H+A+IVS+ FYGIW LF GF+IPRP++P+WWRWY W PVAWTLYGL+A
Sbjct: 1344 GMMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVA 1403
Query: 1384 SQFGDVEDQMENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQR 1443
SQFGD+ M++G VK F+ +YF FKH +LG+VA V+ F LF F+F I +LNFQ+
Sbjct: 1404 SQFGDIMTPMDDGTPVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQK 1463
Query: 1444 R 1444
R
Sbjct: 1464 R 1464
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1980 bits (5130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 958/1423 (67%), Positives = 1122/1423 (78%), Gaps = 17/1423 (1%)
Query: 35 EEDDEEALKWAALEKLPTYNRLRKGLL-----------TTSRGEAFEVDVSNLGLQQRQR 83
EEDDEEAL+WAAL+KLPTY+R+R +L G VDV +LG +R+
Sbjct: 50 EEDDEEALRWAALQKLPTYDRVRAAILPMVEGEGGEAGGGGGGRRVVVDVHSLGPHERRA 109
Query: 84 LINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAYLASKALPSFTKF 143
L+ +LV+V + DNE+FLLKLK RI RVGID+P +EVR+EHL VE E + + +P+
Sbjct: 110 LLERLVRVADDDNERFLLKLKERISRVGIDMPTIEVRFEHLEVEAEVRVGNSGIPTVLNS 169
Query: 144 YTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD 203
T E+ N LGILP+RK+ L IL D+SGIIKP RMTLLLGPP SGKTT LLALAG+L
Sbjct: 170 ITNKIEEAANALGILPTRKQTLRILHDISGIIKPKRMTLLLGPPGSGKTTFLLALAGRL- 228
Query: 204 SSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL 263
LK SG+VTYNGH M +FVP+RTAAYISQHD HIGEMTVRETL+FSARCQGVGSR+++L
Sbjct: 229 KDLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFDML 288
Query: 264 TELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323
TEL RRE A IKPD D+D +MKA A EGQE+N+ITDY LK+LGLE+CADTMVGD+M+RG
Sbjct: 289 TELTRREKAANIKPDADVDAFMKASAMEGQESNLITDYILKILGLEICADTMVGDDMVRG 348
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383
ISGG+RKRVTTGEM+VGPA A FMDEISTGLDSSTTFQIV L+Q +HI GTAVISLLQ
Sbjct: 349 ISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQTIHILGGTAVISLLQ 408
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQK 443
PAPETYDLFDDIILLSDG IVYQGPRE VLEFFE MGFKCP+RKGVADFLQEVTSRKDQK
Sbjct: 409 PAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGVADFLQEVTSRKDQK 468
Query: 444 QYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRE 503
QYW +KPYR+V ++EFA AFQSFH G+ I++EL TPFDKSKSH AALTT YG E
Sbjct: 469 QYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHPAALTTSRYGVSAME 528
Query: 504 LLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFF 563
LLK I RELLL+KRNSFVYIF+ Q+ +V+ MT+F RTKMH+ S+ DG I+ GALFF
Sbjct: 529 LLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRDSVADGVIFMGALFF 588
Query: 564 ATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLT 623
A M+M NGL+E+ +TI KLPVF+KQRD FFP W Y IPSWILK P+SF+EV + F++
Sbjct: 589 AVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFIEVGGFCFMS 648
Query: 624 YYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGG 683
YYVIG DPN GRFFKQYLL LAV+QMA+ALFR + R+++VAN FG+F LL+ LGG
Sbjct: 649 YYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFMLLIFMVLGG 708
Query: 684 FVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSY--ESIGVQVLKSRG 741
F+L+R+ + KWW W YW SPM YAQNA+ NEFLG+SW K NS E++GVQ L SRG
Sbjct: 709 FILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALMSRG 768
Query: 742 FFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTV 801
F A WYW+G GAL GFI+LFN+ FT+A+T+L K + I+EE KQ N I G V
Sbjct: 769 IFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEEELKEKQAN-INGNV 827
Query: 802 QLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQE 861
S +++ S+ + A S P +RGM+LPF P SLTF+++ YSVDMPQE
Sbjct: 828 LDVDTMASSNNLAIVGSTGTGSEI--ADNSQPTQRGMVLPFTPLSLTFEDIKYSVDMPQE 885
Query: 862 MKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITIS 921
MK G++ED+L LL G+SG FRPGVLTALMGVSGAGKTTLMDVL+GRKTGGYI GNI+IS
Sbjct: 886 MKAHGIVEDRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISIS 945
Query: 922 GYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV 981
GYPKKQETFAR+SGYCEQNDIHSP VTV ESLL+SAWLRLP +VDS TRKMFIEEVMELV
Sbjct: 946 GYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELV 1005
Query: 982 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
ELKPL +LVGLPGV+GLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV
Sbjct: 1006 ELKPLRDALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1065
Query: 1042 RNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGV 1101
RNTV+TGRTVVCTIHQP IDIF+AFDELFLMKRGG+EIYVGPLG HS +LI YFE I GV
Sbjct: 1066 RNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFEGIQGV 1125
Query: 1102 EKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLY 1161
KI DGYNPATWMLEVT SQE AL VDF DI+R SEL++RNKALI+ELS P PGS +LY
Sbjct: 1126 SKITDGYNPATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKALIQELSTPPPGSSELY 1185
Query: 1162 FPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQ 1221
FPTQYSQS Q +ACLWKQH SYWRNP Y A+R FFT IA++ G++FWD+G K +SQ
Sbjct: 1186 FPTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGTIFWDLGGKMGQSQ 1245
Query: 1222 DLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPY 1281
DLFNAMGSM+ A++F+G+ SVQPVVSVERTVFYRE+AAGMYS LP+A Q IE PY
Sbjct: 1246 DLFNAMGSMYAAVLFIGVLNGQSVQPVVSVERTVFYRERAAGMYSALPYAFGQVAIEFPY 1305
Query: 1282 IFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVS 1341
VQSV+Y +IVY+M+G+ WT KF WY FFM+ TLL FTFYGM+ V +TP++H+A+IVS
Sbjct: 1306 TLVQSVIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYGMMAVGLTPSYHVASIVS 1365
Query: 1342 TLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQMENGETVKH 1401
+ FY IW LF GFVI RP PVWWRWY W PVAWTLYGLI SQ+GD+ M++G V
Sbjct: 1366 SAFYAIWNLFTGFVISRPATPVWWRWYCWICPVAWTLYGLIVSQYGDIVTPMDDGIPVNV 1425
Query: 1402 FLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1444
F+ +YF FKH +LG VA V+ F LF F+F I +LNFQ+R
Sbjct: 1426 FVENYFDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1468
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1966 bits (5092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 958/1434 (66%), Positives = 1155/1434 (80%), Gaps = 12/1434 (0%)
Query: 13 SLRGNISRWRTSSVG-AFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFEV 71
SLR ++S WR+ S F +S REEDDEEALKWAALEKLPTY+RLRKG++T GE EV
Sbjct: 18 SLRRSVSAWRSPSTSDVFGRSSREEDDEEALKWAALEKLPTYDRLRKGIMTGDGGEIQEV 77
Query: 72 DVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAY 131
D+ LG Q+R+ L+ KLV+ E DNE+FLLKL++R++RVGID P +EVR+EHLN+ EA+
Sbjct: 78 DIQGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIEVRFEHLNINAEAF 137
Query: 132 LASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGK 191
+ ++ +P+ F+ I + L ++PS K+ ++IL DVSGIIKP RMTLLLGPP +GK
Sbjct: 138 VGNRGVPTLVNFFVNKAIWILSALHLMPSGKRPISILHDVSGIIKPCRMTLLLGPPGAGK 197
Query: 192 TTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSA 251
TTLLLALAGKLD++LKV+G VTYNGH M EFVP+RT+AYISQHD HIGEMTVRETLAFS+
Sbjct: 198 TTLLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVRETLAFSS 257
Query: 252 RCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVC 311
RCQGVG+RYE+LTEL+RRE EA IKPDPD+DVYMKA+A EGQE+ V+TDY LK+LGL++C
Sbjct: 258 RCQGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQES-VVTDYILKILGLDIC 316
Query: 312 ADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVH 371
ADTMVGD MIRGISGG++KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIVN L+Q VH
Sbjct: 317 ADTMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQSVH 376
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVAD 431
I GTA+I+LLQPAPETYDLFDDI+LLSDGQIVYQGPRE VLEFFESMGFKCP+RKGVAD
Sbjct: 377 ILGGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGVAD 436
Query: 432 FLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAA 491
FLQEVTSRKDQ+QYW + +PYRFV V EF+EAF+SFHVG K+ +EL TPFD+S++H AA
Sbjct: 437 FLQEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHPAA 496
Query: 492 LTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSL 551
LTT YG K ELLK CI RE LLMKRNSFVYIFK+ Q+ +AL MT+F RTK+ ++ L
Sbjct: 497 LTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRNGL 556
Query: 552 TDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPI 611
D I+ GA+F +FNG AE++M+IAKLPVFYKQRD F+PPWAYA+P+WILKIPI
Sbjct: 557 EDATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKIPI 616
Query: 612 SFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFG 671
SF+E VW+ +TYYVIG DPN R F+ YLL + ++Q+AS LFRL+AA GR MVVA+TFG
Sbjct: 617 SFVECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFG 676
Query: 672 TFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYES 731
FA LVL LGGF+++RE IKK+W W YW SP+ YAQNAI NEFLG+SW K + ++
Sbjct: 677 AFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQT 736
Query: 732 IGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESN 791
+G + L++RG F WYW+G+GAL G+++LFN F + + +L+ L K + ++EE+
Sbjct: 737 LGERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQE 796
Query: 792 KQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDE 851
K+ NR V+L+ RG + G E + +K+GM+LPF P S+TFD
Sbjct: 797 KEANRTGANVELATRGSAATSDGGS---------VEIRKDGNRKKGMVLPFTPLSITFDN 847
Query: 852 VVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG 911
V YSVDMPQEMK +GV EDKL+LL G+SGAFRPGVLTALMGVSG GKTTLMDVL+GRKTG
Sbjct: 848 VKYSVDMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLMDVLAGRKTG 907
Query: 912 GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRK 971
GYI G+I ISGYPK QETFARISGYCEQNDIHSP VTVYESLLYSAWLRLP EVD + RK
Sbjct: 908 GYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPAEVDEKQRK 967
Query: 972 MFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
MF++EVM+LVEL L SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA
Sbjct: 968 MFVDEVMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1027
Query: 1032 RAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQL 1091
RAAAIVMR VRNTVDTGRTVVCTIHQP IDIF+AFDELFLMKRGG+EIYVGPLGR S L
Sbjct: 1028 RAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRQSSHL 1087
Query: 1092 ISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELS 1151
I YFE+I GV+KIK+ YNPATWMLEVT SQE LG++F +++R S+LY+RNK LI+ELS
Sbjct: 1088 IKYFESIDGVKKIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDLYKRNKDLIKELS 1147
Query: 1152 KPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFW 1211
P PGSKDL+F TQ+SQS Q +ACLWKQH SYWRNP YTA R FFT IA++ G++FW
Sbjct: 1148 TPPPGSKDLFFATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFTVVIALIFGTIFW 1207
Query: 1212 DMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWA 1271
D+G K S DL NAMGSM+ A++F+G+Q +VQP+V VERTVFYREKAAGMYS LP+A
Sbjct: 1208 DLGKKRSTSLDLINAMGSMYAAVLFIGIQNAQTVQPIVDVERTVFYREKAAGMYSALPYA 1267
Query: 1272 LAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAIT 1331
AQ +IE+P+I VQ+++Y ++VY+M+G+DWTA KF WY FFM+ T L FT+YGM+ VA+T
Sbjct: 1268 YAQVLIEVPHILVQTLLYGLLVYSMIGFDWTAAKFLWYMFFMFFTFLYFTYYGMMAVAMT 1327
Query: 1332 PNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVED 1391
PN IAAIV+ FY IW +F GF+IPRPRIP+WWRWYYWA PVAWTLYGL+ SQFG+ D
Sbjct: 1328 PNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQFGEYTD 1387
Query: 1392 QMEN-GETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1444
M + ETVK FLR + GF+HDFL +V ++ F LF +FA IK LNFQRR
Sbjct: 1388 TMSDVDETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1444 | ||||||
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.987 | 0.997 | 0.731 | 0.0 | |
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.986 | 0.997 | 0.724 | 0.0 | |
| 356519409 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.984 | 0.997 | 0.723 | 0.0 | |
| 297743362 | 3142 | unnamed protein product [Vitis vinifera] | 0.987 | 0.453 | 0.738 | 0.0 | |
| 147816688 | 1471 | hypothetical protein VITISV_022715 [Viti | 0.995 | 0.976 | 0.725 | 0.0 | |
| 255546581 | 1449 | ATP-binding cassette transporter, putati | 0.997 | 0.994 | 0.700 | 0.0 | |
| 359482642 | 1429 | PREDICTED: pleiotropic drug resistance p | 0.987 | 0.997 | 0.717 | 0.0 | |
| 297743343 | 1642 | unnamed protein product [Vitis vinifera] | 0.981 | 0.863 | 0.714 | 0.0 | |
| 255572799 | 1443 | ATP-binding cassette transporter, putati | 0.981 | 0.981 | 0.717 | 0.0 | |
| 297743360 | 1451 | unnamed protein product [Vitis vinifera] | 0.993 | 0.988 | 0.730 | 0.0 |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2216 bits (5743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1059/1447 (73%), Positives = 1231/1447 (85%), Gaps = 21/1447 (1%)
Query: 1 MEGSHDSYLASTSLR-GNISRWRTSSVGAFSKSLR--EEDDEEALKWAALEKLPTYNRLR 57
MEG+ + Y+A SLR G S WR++++ FSKS R E+DDEEALKWAA+E+LPTY+RL+
Sbjct: 1 MEGT-ELYIAGGSLRRGESSIWRSNAMEGFSKSSRGDEDDDEEALKWAAIERLPTYDRLK 59
Query: 58 KGLLTTSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKV 117
KGLLTTS+GEA E+DV NLG +++ L+++LVKV E DNE FLLKLK+RIDRVGI+LP +
Sbjct: 60 KGLLTTSKGEANEIDVKNLGFHEKRTLLDRLVKVAEEDNELFLLKLKNRIDRVGIELPMI 119
Query: 118 EVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKP 177
EVR+EHLNVE EA++ S+ALP+F F + E N+L ILPS KK L+IL+DVSGIIKP
Sbjct: 120 EVRFEHLNVETEAHVGSRALPTFFNFSIDIVEGFLNFLHILPSGKKSLSILQDVSGIIKP 179
Query: 178 GRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNH 237
RMTLLLGPP+SGKTTLLLALAGKLD LK SGRVTYNGH+M EFVP+RTAAYISQHD H
Sbjct: 180 KRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMNEFVPQRTAAYISQHDTH 239
Query: 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRETLAF+ARCQGVG RYE+++EL RRE + IKPDPDIDV+MKA+ATEGQEANV
Sbjct: 240 IGEMTVRETLAFAARCQGVGHRYEMISELLRREKASNIKPDPDIDVFMKAMATEGQEANV 299
Query: 298 ITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGLEVCAD MVG+EM+RG+SGG+RKRVTTGEM+VGPA ALFMDEISTGLDSS
Sbjct: 300 VTDYILKILGLEVCADIMVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSS 359
Query: 358 TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFE 417
TT+QIVN +KQ++HI +GTAVISLLQP PETY+LFDDIILLSDGQIVYQGPRE VLEFFE
Sbjct: 360 TTYQIVNSIKQYIHILNGTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFE 419
Query: 418 SMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDE 477
MGFKCP+RKGVADFLQEVTSRKDQ QYW K+KPY FVTV EFAEAFQSF VG+++ E
Sbjct: 420 YMGFKCPERKGVADFLQEVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAE 479
Query: 478 LRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAF 537
L TPFDKSKSH AALTT+ YG GK ELLK C SRE+LLMKRNSFVYIFKLTQ++ +A+
Sbjct: 480 LSTPFDKSKSHPAALTTKKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVA 539
Query: 538 MTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPP 597
MTLFLRT+MH+ S+T+GGIY GALFF+ +MFNGL+EIS+TIAKLPVFYKQR F+PP
Sbjct: 540 MTLFLRTEMHRDSVTNGGIYVGALFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPP 599
Query: 598 WAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLI 657
WA+++P WI KIPI+ ++VA+WVFLTYYVIG DPN GRFFKQYLL V+QMAS LFR I
Sbjct: 600 WAFSLPPWITKIPITLVQVAIWVFLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFI 659
Query: 658 AATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFL 717
AA GR+M+VANTFG+FALL LFALGGF+LSR++IKKWW W YW SP+ Y QNAIV NEFL
Sbjct: 660 AAAGRNMIVANTFGSFALLALFALGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFL 719
Query: 718 GYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQL 777
G SW K P++ E++G+QVL+SRGFF HAYWYW+G+GAL GF LL+N FT+A+TFL L
Sbjct: 720 GNSWNKVLPDTTETLGIQVLESRGFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLGPL 779
Query: 778 EKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRG 837
+KP+AVI+E+S SN G++GE I +S LI+ E +H K++G
Sbjct: 780 QKPQAVISEDSASNTS-------------GKTGEVIQ-LSSVRTELIVEE---NHQKQKG 822
Query: 838 MILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAG 897
M+LPFEPHS+TF+++ YSVDMPQEMK QG ED+L LL G+SGAFRPGVLTALMGVSGAG
Sbjct: 823 MVLPFEPHSITFNDIRYSVDMPQEMKRQGATEDRLELLRGVSGAFRPGVLTALMGVSGAG 882
Query: 898 KTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 957
KTTLMDVL+GRKTGGYI G+I ISG+PKKQETFARISGYCEQNDIHSP VTVYESLLYS+
Sbjct: 883 KTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPHVTVYESLLYSS 942
Query: 958 WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1017
WLRLPPEV+SETRKMFIEEVMELVEL PL Q+LVGLPGVSGLSTEQRKRLTIAVELVANP
Sbjct: 943 WLRLPPEVNSETRKMFIEEVMELVELTPLRQALVGLPGVSGLSTEQRKRLTIAVELVANP 1002
Query: 1018 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077
SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL LMKRGGQ
Sbjct: 1003 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1062
Query: 1078 EIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCS 1137
EIYVGPLGRHSCQLI YFEAI GV IKDGYNPATWMLEV++S+QE+ LG+DF I++ S
Sbjct: 1063 EIYVGPLGRHSCQLIKYFEAIEGVPDIKDGYNPATWMLEVSSSAQEMVLGLDFAAIYKNS 1122
Query: 1138 ELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFF 1197
ELYRRNKALIEELS P GS DLYFPTQYSQS FTQ MACLWKQHWSYWRNP YTAVRF
Sbjct: 1123 ELYRRNKALIEELSTPPLGSNDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFL 1182
Query: 1198 FTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFY 1257
FT IA++ G++FWD+GSKT K QDLFNAMGSM+ AI+FLG+Q SSVQPVV+VERTVFY
Sbjct: 1183 FTTVIALMFGTMFWDLGSKTTKRQDLFNAMGSMYAAIVFLGIQNASSVQPVVAVERTVFY 1242
Query: 1258 REKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITL 1317
RE+AAGMYS LP+A AQ +IE+PYIF+Q+ VY +IVYAM+G++W+A KF WY FFMY TL
Sbjct: 1243 RERAAGMYSPLPYAFAQVVIELPYIFLQAAVYGLIVYAMIGFEWSAAKFFWYLFFMYFTL 1302
Query: 1318 LLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWT 1377
L +T+YGM+ VA+TPN +A+IVS+ FY IW LF GF+IPRPRIPVWWRWY W PVA+T
Sbjct: 1303 LFYTYYGMMAVAVTPNQQVASIVSSAFYSIWNLFSGFIIPRPRIPVWWRWYAWTCPVAYT 1362
Query: 1378 LYGLIASQFGDVEDQMENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIK 1437
LYGL++SQFGD++ +E+GETV+ F+R YF FKH+ LG VA + F LF F FA IK
Sbjct: 1363 LYGLVSSQFGDIKHTLESGETVEDFVRSYFDFKHELLGAVAAAVFGFATLFAFTFAFSIK 1422
Query: 1438 QLNFQRR 1444
NFQRR
Sbjct: 1423 FFNFQRR 1429
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2206 bits (5715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1049/1447 (72%), Positives = 1215/1447 (83%), Gaps = 23/1447 (1%)
Query: 1 MEGSHDSYLASTSLRGNISR-WRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKG 59
MEGS D Y AS SLR S WR S V AFS+S REEDDEEALKWAALEKLPTYNRLRKG
Sbjct: 1 MEGS-DIYRASNSLRSRSSTVWRNSGVEAFSRSSREEDDEEALKWAALEKLPTYNRLRKG 59
Query: 60 LLTTSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEV 119
LLT S G A E+DVS+LG+Q+RQ+L+ +LVKV E DNE+FLLKLK RIDRVG+D+P +EV
Sbjct: 60 LLTASHGVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEV 119
Query: 120 RYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGR 179
RYEHLN+E EA++ S+ALPSF T V E FN L + S+KKH+TILKDVSGIIKP R
Sbjct: 120 RYEHLNIEAEAFVGSRALPSFINSVTNVVEGFFNLLHVSTSKKKHVTILKDVSGIIKPRR 179
Query: 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIG 239
MTLLLGPP+SGKTTLLLAL+GKLD +LKVSGRVTYNGH++ EFVP+RTAAYISQHD HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIG 239
Query: 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVIT 299
EMTVRETLAFSARCQGVGSRY++L+EL+RRE A IKPDPD+DVYMKA ATEGQE+N++T
Sbjct: 240 EMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESNIVT 299
Query: 300 DYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTT 359
DY LK+LGL++CADTMVGDEM+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 300 DYTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 359
Query: 360 FQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESM 419
FQIV+ L+ +VHI +GTAVISLLQPAPETYDLFDDIIL+SDGQ+VY GPRE VL+FFESM
Sbjct: 360 FQIVSSLRHYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESM 419
Query: 420 GFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELR 479
GF+CP+RKGVADFLQEVTS+KDQ QYW +++PYRFVTV +FAEAFQSFH+G K+ +EL
Sbjct: 420 GFRCPERKGVADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEELT 479
Query: 480 TPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMT 539
PFD++KSH AALTT+ YG K+ELLK SRE LLMKRNSFVY+FKL+Q+ +AL MT
Sbjct: 480 VPFDRTKSHPAALTTKKYGINKKELLKANFSREYLLMKRNSFVYLFKLSQLFIMALVAMT 539
Query: 540 LFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWA 599
LFLRT+MH ++ D G+YAGA+FF VMFNGLAEISMTIAKLPVFYKQR+ F+P WA
Sbjct: 540 LFLRTEMHHENMDDAGVYAGAVFFMLITVMFNGLAEISMTIAKLPVFYKQRNLLFYPSWA 599
Query: 600 YAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAA 659
YAIPSWILKIP++ +EVAVWVFLTYYVIG DPN GRFFKQYL+ L V+QMAS LFR IAA
Sbjct: 600 YAIPSWILKIPVTIVEVAVWVFLTYYVIGFDPNVGRFFKQYLVLLIVSQMASGLFRTIAA 659
Query: 660 TGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGY 719
GR+M+VANTFG FA++ + ALGGF+LS+ DIK WW W YW SP+ Y QNA++ NEFL
Sbjct: 660 LGRNMIVANTFGAFAIITVVALGGFILSKRDIKSWWIWGYWISPLMYGQNALMVNEFLSN 719
Query: 720 SWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEK 779
SW T N +GV+ L+SR FF +YWYWLGLGAL GF+ LFN+ F +A+ FL +K
Sbjct: 720 SWHNATHN----LGVEYLESRAFFTDSYWYWLGLGALVGFVFLFNVMFGLALEFLGPFDK 775
Query: 780 PRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMI 839
P+A ITE+ SN+ GT+ + ++ G SS + L E+ SH KK+GM+
Sbjct: 776 PQATITEDESSNE------GTL-------ADIELPGIESSGRGDSLVES--SHGKKKGMV 820
Query: 840 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT 899
LPFEPHS+TFDEVVYSVDMPQEMK QGV ED+LVLL G+SGAFRPGVLTALMGVSGAGKT
Sbjct: 821 LPFEPHSITFDEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALMGVSGAGKT 880
Query: 900 TLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWL 959
TLMDVL+GRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VTVYESLLYSAWL
Sbjct: 881 TLMDVLAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWL 940
Query: 960 RLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1019
RLP VDS+TRKMFIEEVMELVEL P+ SLVGLPGVSGLSTEQRKRLTIAVELVANPSI
Sbjct: 941 RLPSSVDSKTRKMFIEEVMELVELNPVRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1000
Query: 1020 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1079
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDELFLMKRGGQEI
Sbjct: 1001 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1060
Query: 1080 YVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSEL 1139
YVGPLGRHS LI YFE+I GV KIKDGYNPATWMLEVTA++QE++LGVDF D+++ S+L
Sbjct: 1061 YVGPLGRHSSHLIKYFESIEGVSKIKDGYNPATWMLEVTATAQELSLGVDFTDLYKNSDL 1120
Query: 1140 YRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFT 1199
YRRNK LI+EL +P PGSKDL+FPTQYSQS Q ACLWKQ WSYWRNP YTAVRFFFT
Sbjct: 1121 YRRNKQLIQELGQPAPGSKDLHFPTQYSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFT 1180
Query: 1200 AFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYRE 1259
FIA++ G++FWD+G K DL NA+GSM+TA++FLG+Q SSVQPVV++ERTVFYRE
Sbjct: 1181 TFIALMFGTIFWDLGGKHSTRGDLLNAIGSMYTAVLFLGVQNASSVQPVVAIERTVFYRE 1240
Query: 1260 KAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLL 1319
KAAGMYS LP+A AQ ++E+PY+FVQ+V Y VIVYAM+G++WTAEKF WY FFMY TLL
Sbjct: 1241 KAAGMYSALPYAFAQILVELPYVFVQAVTYGVIVYAMIGFEWTAEKFFWYLFFMYFTLLY 1300
Query: 1320 FTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLY 1379
+TFYGM+TV +TPNHHIA+IV+ FY +W LF GFV+ RP IPVWWRWYYWA PVAWT+Y
Sbjct: 1301 YTFYGMMTVGLTPNHHIASIVAAAFYAVWNLFSGFVVTRPSIPVWWRWYYWACPVAWTIY 1360
Query: 1380 GLIASQFGDVEDQM--ENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIK 1437
GL+ASQFGD+ + M E + VK FL DY+G KHDF+G+ A V+ LF +FA+ IK
Sbjct: 1361 GLVASQFGDLTEPMTSEGQKIVKDFLEDYYGIKHDFIGVSAVVVAGIAVLFALIFAVSIK 1420
Query: 1438 QLNFQRR 1444
NFQ+R
Sbjct: 1421 TFNFQKR 1427
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519409|ref|XP_003528365.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2196 bits (5691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1048/1448 (72%), Positives = 1217/1448 (84%), Gaps = 26/1448 (1%)
Query: 1 MEGSHDSYLASTSLRGNISR-WRTSSVGAFSKSLR--EEDDEEALKWAALEKLPTYNRLR 57
MEGS D Y A SLR N S WR S + AFS+S R E++DEEALKWAALEKLPTYNRLR
Sbjct: 1 MEGS-DIYRARNSLRANSSTVWRNSIMEAFSRSSRHEEDNDEEALKWAALEKLPTYNRLR 59
Query: 58 KGLLTTSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKV 117
KGLLTTSRG A E+D++ LG Q+RQ+L+++L+ V E DNE LLKLK RIDRVGID+P +
Sbjct: 60 KGLLTTSRGVANEIDITELGFQERQKLLDRLINVAEEDNETLLLKLKERIDRVGIDIPTI 119
Query: 118 EVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKP 177
EVRYEHLNVE EAY+ S+ALP+F F T + E F L IL +KKH+TIL+DVSGIIKP
Sbjct: 120 EVRYEHLNVEAEAYVGSRALPTFLNFVTNMVESFFTSLHILSGKKKHVTILRDVSGIIKP 179
Query: 178 GRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNH 237
RM LLLGPP+SGKTTLLLAL+GKLD +LKVSGRV YNGH+M EFVP+RTAAYISQHD H
Sbjct: 180 RRMALLLGPPSSGKTTLLLALSGKLDPTLKVSGRVNYNGHEMNEFVPQRTAAYISQHDVH 239
Query: 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRETLAFSARCQGVG+RY+LL+ELARRE EA IKPDPDIDVYMKA AT GQEA++
Sbjct: 240 IGEMTVRETLAFSARCQGVGTRYDLLSELARREKEAKIKPDPDIDVYMKAAATGGQEASL 299
Query: 298 ITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGL++CADTM+GDEM+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSS
Sbjct: 300 VTDYVLKILGLDICADTMMGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSS 359
Query: 358 TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFE 417
TTFQIV L+Q+VHI +GTAVISLLQPAPETY+LFDDI+L+SDGQIVYQGPRE VLEFFE
Sbjct: 360 TTFQIVKSLRQYVHILNGTAVISLLQPAPETYELFDDIVLISDGQIVYQGPREYVLEFFE 419
Query: 418 SMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDE 477
+GF+CP+RKGVADFLQEVTSRKDQ+QYW H+++ YRFVTV EFAEAFQSFHVG++I +E
Sbjct: 420 YVGFQCPERKGVADFLQEVTSRKDQEQYWIHRDESYRFVTVTEFAEAFQSFHVGRRIGEE 479
Query: 478 LRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAF 537
L TPFDKSKSH AALTT+ YG K+ELLK SRE LLMKRNSFVYIFKL Q++ +A+
Sbjct: 480 LATPFDKSKSHPAALTTKKYGVNKKELLKANFSREYLLMKRNSFVYIFKLFQLTILAILT 539
Query: 538 MTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPP 597
MT+FLRT+MH++SL DGG+Y GALFFA ++MFNGLAEISMTI KLP+FYKQRD F+P
Sbjct: 540 MTMFLRTEMHRNSLNDGGVYTGALFFAVVILMFNGLAEISMTIVKLPIFYKQRDLLFYPS 599
Query: 598 WAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLI 657
WAYAIPSWILKIPI+F+E AVWVFLTYYVIG DPN GR KQYL+ L +NQM+S LFR I
Sbjct: 600 WAYAIPSWILKIPITFIEAAVWVFLTYYVIGFDPNVGRLLKQYLVLLLINQMSSGLFRAI 659
Query: 658 AATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFL 717
AA GR+M+VA+TFG+FALLVLFALGGFVLSR DIK WW W YW SP+ Y QNAIV NEFL
Sbjct: 660 AALGRNMIVASTFGSFALLVLFALGGFVLSRNDIKNWWIWGYWISPLMYGQNAIVVNEFL 719
Query: 718 GYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQL 777
G SW FTPNS +++G+Q+L+SRGFF HAYWYW+G+GAL GF++LFN+ +T+A+T+LN
Sbjct: 720 GDSWNHFTPNSNKTLGIQILESRGFFTHAYWYWIGIGALIGFMILFNIIYTLALTYLNPY 779
Query: 778 EKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRG 837
+ P+ ITEESES + G + + R + SH KKRG
Sbjct: 780 DTPQTTITEESESGMTN----GIAESAGRA-----------------IAVMSSSHKKKRG 818
Query: 838 MILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAG 897
MILPFEP+S+TFD++VYSVDMP EMK QGV ED+LVLL G+SGAFRPGVLTALMGVSGAG
Sbjct: 819 MILPFEPYSITFDQIVYSVDMPLEMKDQGVREDRLVLLKGVSGAFRPGVLTALMGVSGAG 878
Query: 898 KTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 957
KTTLMDVL+GRKTGGYI GNI +SGYPK+QETFARISGYCEQNDIHSP VTVYESL+YSA
Sbjct: 879 KTTLMDVLAGRKTGGYIEGNIKVSGYPKRQETFARISGYCEQNDIHSPHVTVYESLVYSA 938
Query: 958 WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1017
WLRLP EV++ TRKMFIEEVMELVEL PL SLVGLPGV+GLSTEQRKRLTIAVELVANP
Sbjct: 939 WLRLPAEVEAYTRKMFIEEVMELVELNPLRNSLVGLPGVNGLSTEQRKRLTIAVELVANP 998
Query: 1018 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077
SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDELFLMKRGGQ
Sbjct: 999 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1058
Query: 1078 EIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCS 1137
EIYVGPLGRHS Q+I YFE+I GV KIKDGYNPATWMLEVT +QE+ LGVDF++I+R S
Sbjct: 1059 EIYVGPLGRHSSQMIKYFESIEGVGKIKDGYNPATWMLEVTTPAQELNLGVDFHEIYRNS 1118
Query: 1138 ELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFF 1197
L RRNK LI EL P PGSKDL+FPTQY QS Q +ACLWKQHWSYWRNP YTAVRF
Sbjct: 1119 GLCRRNKRLISELGNPAPGSKDLHFPTQYPQSLLVQCLACLWKQHWSYWRNPPYTAVRFL 1178
Query: 1198 FTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFY 1257
T AVL G++FWD+G K QDLFNAMGSM+ A++F+G+Q +SVQPVV++ERTVFY
Sbjct: 1179 STTVTAVLFGTMFWDLGGKYSSRQDLFNAMGSMYNAVLFVGVQNSASVQPVVAIERTVFY 1238
Query: 1258 REKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITL 1317
RE+AAGMYS LP+ALAQ +IE+PY+FVQ+ Y VIVYAMMG++WT +KF WY FFMY TL
Sbjct: 1239 RERAAGMYSALPYALAQVIIELPYVFVQATSYSVIVYAMMGFEWTLQKFFWYVFFMYFTL 1298
Query: 1318 LLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWT 1377
FTFYGM+TVA+TPNHH+A++V++ FYGIW LF GFVI RP IPVWWRWYYWA PVAWT
Sbjct: 1299 CYFTFYGMMTVAVTPNHHVASVVASAFYGIWNLFSGFVIARPSIPVWWRWYYWACPVAWT 1358
Query: 1378 LYGLIASQFGDVEDQMENGE-TVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGI 1436
+YGL+ASQFGD+ + M++ +V+ F+R + G KHDF+G+ A +++ F LF +FA+ I
Sbjct: 1359 IYGLVASQFGDITNVMKSENMSVQEFIRSHLGIKHDFVGVSAIMVSGFAVLFVIIFAVSI 1418
Query: 1437 KQLNFQRR 1444
K NFQRR
Sbjct: 1419 KAFNFQRR 1426
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2190 bits (5674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1060/1436 (73%), Positives = 1226/1436 (85%), Gaps = 10/1436 (0%)
Query: 19 SRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFEVDVSNLGL 78
S WR S FS+S R+EDDEEALKWAALEKLPTYNR+RKGLL S GEA EVD+ NLG
Sbjct: 1707 SIWRNSGEEVFSRSSRDEDDEEALKWAALEKLPTYNRMRKGLLMGSAGEASEVDIHNLGF 1766
Query: 79 QQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAYLASKALP 138
Q+++ L+ +LVK+ E DNEKFLLKL++RIDRVGIDLP++EVR+EHL ++ EA++ S+ALP
Sbjct: 1767 QEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIEVRFEHLTIDAEAHVGSRALP 1826
Query: 139 SFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLAL 198
SF EDI N L ILPSRKK LTIL DVSGIIKP RMTLLLGPP+SGKTTLLLAL
Sbjct: 1827 SFIYSAFNQIEDILNTLRILPSRKKKLTILHDVSGIIKPRRMTLLLGPPSSGKTTLLLAL 1886
Query: 199 AGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGS 258
+GKLDSSLKV+G+VTYNGH M EFVP+RTA YISQHD HIGEMTVRETLAFSARCQGVG
Sbjct: 1887 SGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRETLAFSARCQGVGD 1946
Query: 259 RYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318
RY++L EL+RRE A IKPDPDIDV+MKA+ATEGQ+ NVITDY LK+LGLEVCADT+VGD
Sbjct: 1947 RYDMLAELSRREKAANIKPDPDIDVFMKAVATEGQKENVITDYTLKILGLEVCADTLVGD 2006
Query: 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV 378
+MIRGISGG+RKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN L+Q +HI +GTA+
Sbjct: 2007 QMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSLRQTIHILNGTAL 2066
Query: 379 ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTS 438
ISLLQPAPETYDLFDDIILLSD QIVYQGPRE VL+FFESMGF+CP+RKGVADFLQEVTS
Sbjct: 2067 ISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGFRCPERKGVADFLQEVTS 2126
Query: 439 RKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYG 498
RKDQ+QYW K++PY FVTV+EFAEAFQSFH+G+K+ EL TPFDK+KSH AAL TE YG
Sbjct: 2127 RKDQQQYWARKDEPYSFVTVKEFAEAFQSFHIGRKLGHELATPFDKTKSHPAALKTEKYG 2186
Query: 499 AGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYA 558
K+ELL CISRE LLMKRNSFVYIFKLTQ+ +A MT+FLRT+MHK+S DG IY
Sbjct: 2187 VRKKELLDACISREYLLMKRNSFVYIFKLTQLIIMAAISMTIFLRTEMHKNSTDDGSIYT 2246
Query: 559 GALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAV 618
GALFF M+MFNG++E++MTIAKLPVFYKQR F+P WAYA+PSWILKIPI+F+EVAV
Sbjct: 2247 GALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYALPSWILKIPITFVEVAV 2306
Query: 619 WVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVL 678
WVF++YYVIG DPN GR FKQYLL + VNQMASALFR IAA GR+M+VANTFG+F+LL+L
Sbjct: 2307 WVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIVANTFGSFSLLLL 2366
Query: 679 FALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSW-KKFTPNSYESIGVQVL 737
FALGGFVLSRE++KKWW W YW SP+ YAQNAIV NEFLG SW K + +S ES+GV VL
Sbjct: 2367 FALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSSTDSTESLGVAVL 2426
Query: 738 KSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRI 797
KSRGFF AYWYW+G GAL GFIL+FN +T+A+T+LN EKP+AVITEESE++K +I
Sbjct: 2427 KSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFEKPQAVITEESENSKTGGKI 2486
Query: 798 ------RGTVQLSARGESGEDISGRNSSSKSLILTE--AQGSHPKKRGMILPFEPHSLTF 849
RG++ +A E ++I SS+ S + E A+ K+GM+LPF+P S+TF
Sbjct: 2487 ELSSHRRGSIDQTASTERRDEIGRSISSTSSSVRAEAIAEARRNNKKGMVLPFQPLSITF 2546
Query: 850 DEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK 909
D++ YSVDMP+EMK QGVLED+L LL G+SGAFRPGVLTALMGVSGAGKTTLMDVL+GRK
Sbjct: 2547 DDIRYSVDMPEEMKSQGVLEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 2606
Query: 910 TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSET 969
TGGYI GNI ISGYPKKQETFARISGYCEQNDIHSP VT++ESLLYSAWLRLP +VDS+T
Sbjct: 2607 TGGYIEGNINISGYPKKQETFARISGYCEQNDIHSPHVTIHESLLYSAWLRLPADVDSKT 2666
Query: 970 RKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
RKMFIEEVMELVEL PL SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 2667 RKMFIEEVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 2726
Query: 1030 DARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSC 1089
DARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL L+KRGGQEIYVGPLGRHS
Sbjct: 2727 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGRHSS 2786
Query: 1090 QLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEE 1149
LI YF+ I GV KIKDGYNPATWMLEVT+S+QE LGVDF +I++ S+LYRRNK LI+E
Sbjct: 2787 HLIKYFQGIEGVSKIKDGYNPATWMLEVTSSAQEFLLGVDFTEIYKNSDLYRRNKDLIKE 2846
Query: 1150 LSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSL 1209
LS+P PGSKDLYFPTQYSQS FTQ MACLWKQ SYWRNP YTAVRFFFT FIA++ G++
Sbjct: 2847 LSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFFTTFIALIFGTM 2906
Query: 1210 FWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLP 1269
FWD+G+K +K QDL NAMGSM+ A++FLG+Q SSVQPVV+VERTVFYRE+AAGMYS +P
Sbjct: 2907 FWDLGTKRKKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERAAGMYSAMP 2966
Query: 1270 WALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVA 1329
+A AQA++EIPY+F Q+VVY VIVYAM+G++WTA KF WY FFM+ TLL FTFYGM+ VA
Sbjct: 2967 YAFAQALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMAVA 3026
Query: 1330 ITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDV 1389
TPN HIAAIV+ FYG+W LF GF++PR RIPVWWRWYYWA PVAWTLYGL+ SQFGD+
Sbjct: 3027 ATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQFGDI 3086
Query: 1390 EDQMEN-GETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1444
+D+ E+ G+TV+ +L DYFGF+HDFLG+VA V+ F LF F+FA IK NFQRR
Sbjct: 3087 QDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVLFLFIFAFAIKAFNFQRR 3142
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816688|emb|CAN77690.1| hypothetical protein VITISV_022715 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2178 bits (5644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1063/1465 (72%), Positives = 1228/1465 (83%), Gaps = 28/1465 (1%)
Query: 8 YLASTSLRGNISR-WRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRG 66
Y A SLR + S WR S FS+S R+EDDEEALKWAALEKLPTYNR+RKGLL S G
Sbjct: 7 YRAGGSLRKDSSSIWRNSGEEVFSRSSRDEDDEEALKWAALEKLPTYNRMRKGLLMGSAG 66
Query: 67 EAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNV 126
EA EVD+ NLG Q+++ L+ +LVK+ E DNEKFLLKL++RIDRVGIDLP++EVR+EHL +
Sbjct: 67 EASEVDIHNLGFQEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIEVRFEHLTI 126
Query: 127 EGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGP 186
+ EA++ S+ALPSF EDI N L ILPSRKK TIL DVSGIIKP RMTLLLGP
Sbjct: 127 DAEAHVGSRALPSFINSAFNQIEDILNTLRILPSRKKKXTILHDVSGIIKPRRMTLLLGP 186
Query: 187 PASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRET 246
P+SGKTTLLLAL+GKLDSSLKV+G+VTYNGH M EFVP+RTA YISQHD HIGEMTVRET
Sbjct: 187 PSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRET 246
Query: 247 LAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK-----------------AIA 289
LAFSARCQGVG RY++L EL+RRE A IKPDPDIDV+MK A+A
Sbjct: 247 LAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKEQNLLSLEFLKVLIGLMAVA 306
Query: 290 TEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDE 349
TEGQ+ NVITDY LK+LGLEVCADT+VGD+MIRGISGG+RKRVTTGEM+VGP+ ALFMDE
Sbjct: 307 TEGQKENVITDYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDE 366
Query: 350 ISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPR 409
ISTGLDSSTT+QIVN L+Q +HI +GTA+ISLLQPAPETYDLFDDIILLSD QIVYQGPR
Sbjct: 367 ISTGLDSSTTYQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPR 426
Query: 410 ELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFH 469
E VL+FFESMGF+CP+RKGVADFLQEVTSRKDQ+QYW K++PY FVTV+EFAEAFQSFH
Sbjct: 427 EDVLDFFESMGFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKEFAEAFQSFH 486
Query: 470 VGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQ 529
+G+K+ EL TPFDK+KSH AAL TE YG K+ELL CISRE LLMKRNSFVYIFKLTQ
Sbjct: 487 IGRKLGHELATPFDKTKSHPAALKTEKYGVRKKELLDACISREYLLMKRNSFVYIFKLTQ 546
Query: 530 ISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQ 589
+ +A MT+FLRT+MHK+S DG IY GALFF M+MFNG++E++MTIAKLPVFYKQ
Sbjct: 547 LIIMAAISMTIFLRTEMHKNSTDDGSIYTGALFFTVVMIMFNGMSELAMTIAKLPVFYKQ 606
Query: 590 RDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQM 649
R F+P WAYA+PSWILKIPI+F+EVAVWVF++YYVIG DPN GR FKQYLL + VNQM
Sbjct: 607 RGLLFYPAWAYALPSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQM 666
Query: 650 ASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQN 709
ASALFR IAA GR+M+VANTFG+F+LL+LFALGGFVLSRE++KKWW W YW SP+ YAQN
Sbjct: 667 ASALFRFIAAAGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQN 726
Query: 710 AIVANEFLGYSW-KKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFT 768
AIV NEFLG SW K + +S ES+GV VLKSRGFF AYWYW+G GAL GFIL+FN +T
Sbjct: 727 AIVVNEFLGKSWSKNSSTDSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYT 786
Query: 769 MAITFLNQLEKPRAVITEESESNKQDNRI------RGTVQLSARGESGEDISGRNSSSKS 822
+A+T+LN EKP+AVITEESE++K +I RG++ +A E E+I SS+ S
Sbjct: 787 VALTYLNAFEKPQAVITEESENSKTGGKIELSSHRRGSIDQTASTERREEIGRSISSTSS 846
Query: 823 LILTEA--QGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSG 880
+ EA + K+GM+LPF+P S+TF+++ YSVDMP+EMK QGVLED+L LL G+SG
Sbjct: 847 SVRAEAIAEARRNNKKGMVLPFQPLSITFEDIRYSVDMPEEMKSQGVLEDRLELLKGVSG 906
Query: 881 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQN 940
AFRPGVLTALMGVSGAGKTTLMDVL+GRKTGGYI GNI ISGYPKKQETFARI GYCEQN
Sbjct: 907 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFARIXGYCEQN 966
Query: 941 DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000
DIHSP VT++ESLLYSAWLRLP +VDS+TRKMFIEEVMELVEL PL SLVGLPGV+GLS
Sbjct: 967 DIHSPHVTIHESLLYSAWLRLPADVDSKTRKMFIEEVMELVELTPLKDSLVGLPGVNGLS 1026
Query: 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1060
TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP I
Sbjct: 1027 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1086
Query: 1061 DIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTAS 1120
DIF+AFDEL L+KRGGQEIYVGPLGRHS LI YFE I GV KIK GYNPATWMLEVT S
Sbjct: 1087 DIFEAFDELLLLKRGGQEIYVGPLGRHSSHLIKYFEGIEGVSKIKGGYNPATWMLEVTTS 1146
Query: 1121 SQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWK 1180
+QE LGVDF +I++ S+LYRRNK LI+ELS+P PGSKDLYFPTQYSQS FTQ MACLWK
Sbjct: 1147 AQEFLLGVDFTEIYKNSDLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWK 1206
Query: 1181 QHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQ 1240
Q SYWRNP YTAVRFFFT FIA++ G++FWD+G+K +K QDL NAMGSM+ A++FLG+Q
Sbjct: 1207 QRRSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGTKRKKQQDLSNAMGSMYAAVLFLGVQ 1266
Query: 1241 YCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYD 1300
SSVQPVV+VERTVFYRE+AAGMYS +P+A AQA++EIPY+F Q+VVY VIVYAM+G++
Sbjct: 1267 NSSSVQPVVAVERTVFYRERAAGMYSAMPYAFAQALVEIPYVFAQAVVYGVIVYAMIGFE 1326
Query: 1301 WTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPR 1360
WTA KF WY FFM+ TLL FTFYGM+ VA TPN HIAAIV+ FYG+W LF GF++PR R
Sbjct: 1327 WTAAKFFWYLFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTR 1386
Query: 1361 IPVWWRWYYWANPVAWTLYGLIASQFGDVEDQMEN-GETVKHFLRDYFGFKHDFLGLVAG 1419
IPVWWRWYYWA PVAWTLYGL+ SQFGD++D+ E+ G+TV+ +L DYFGF+HDFLG+VA
Sbjct: 1387 IPVWWRWYYWACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAA 1446
Query: 1420 VLTCFVALFGFVFALGIKQLNFQRR 1444
V+ F LF F+FA IK NFQRR
Sbjct: 1447 VIVGFTILFLFIFAFAIKAFNFQRR 1471
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546581|ref|XP_002514350.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223546806|gb|EEF48304.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2169 bits (5619), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1017/1452 (70%), Positives = 1207/1452 (83%), Gaps = 11/1452 (0%)
Query: 1 MEGSHDSYLASTSLRGNISRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGL 60
ME + + S L + WR +++ FSKS R+EDDEEALKWAALEKLPTY R+R+G+
Sbjct: 1 MENADTPRVGSARLSSS-DIWRNTTLEIFSKSSRDEDDEEALKWAALEKLPTYLRIRRGI 59
Query: 61 LTTSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVR 120
L G++ E+D+++LGL +++ L+ +LVK+ E DNEKFLLKLK RID+VG+D+P +EVR
Sbjct: 60 LIEQGGQSREIDINSLGLIEKRNLLERLVKIAEEDNEKFLLKLKDRIDKVGLDMPTIEVR 119
Query: 121 YEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRM 180
+EHL+VE EAY+ S+ALP+ F +FE NYL ILPSRKK L+IL DVSGIIKP RM
Sbjct: 120 FEHLSVEAEAYVGSRALPTMFNFSVNMFEAFLNYLHILPSRKKPLSILNDVSGIIKPRRM 179
Query: 181 TLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGE 240
TLLLGPP+SGKTTLLLALAGKL LK SGRVTYNGH M EFVP+RT+AYISQ+D HIGE
Sbjct: 180 TLLLGPPSSGKTTLLLALAGKLTKDLKFSGRVTYNGHGMEEFVPQRTSAYISQYDIHIGE 239
Query: 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITD 300
MTVRETLAFSARCQGVGSRYE+L ELARRE EA IKPDPDID+YMKA A EGQEANV+TD
Sbjct: 240 MTVRETLAFSARCQGVGSRYEMLMELARREKEANIKPDPDIDIYMKAAALEGQEANVVTD 299
Query: 301 YYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTF 360
Y LK+LGLE+CADT+VGDEM RGISGG++KRVTTGEM+VGPA ALFMDEISTGLDS+TTF
Sbjct: 300 YILKILGLELCADTLVGDEMARGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSTTTF 359
Query: 361 QIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMG 420
QIVN L+Q VHI SGTA+I+LLQPAPET++LFDDIILLSDGQIVYQGPRE VL+FFE MG
Sbjct: 360 QIVNSLRQSVHILSGTALIALLQPAPETFELFDDIILLSDGQIVYQGPRENVLDFFEYMG 419
Query: 421 FKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480
FKCP+RKGVADFLQEVTSRKDQ+QYW HK++PY FV+V EF+EAFQSFH+G+K+ DEL T
Sbjct: 420 FKCPERKGVADFLQEVTSRKDQEQYWAHKDQPYLFVSVNEFSEAFQSFHIGRKLGDELAT 479
Query: 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTL 540
PFDKSK+H +LTT+ YG K+EL K CISRE LLMKRNSFVYIFK+TQ+ + MTL
Sbjct: 480 PFDKSKAHPDSLTTKKYGVSKKELFKACISREYLLMKRNSFVYIFKMTQLIILGFITMTL 539
Query: 541 FLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAY 600
FLRT+MH+++ TDGG+Y GALFF +MFNG +E++MTI KLPVFYKQRD F+P WAY
Sbjct: 540 FLRTEMHRNTETDGGVYLGALFFTVTTIMFNGFSELAMTILKLPVFYKQRDLLFYPSWAY 599
Query: 601 AIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAAT 660
A+P+WILKIPI+F+EVAVWV +TYYVIG DPN RFFKQYL+ L NQMASALFRL AA
Sbjct: 600 ALPTWILKIPITFVEVAVWVVMTYYVIGFDPNIQRFFKQYLILLITNQMASALFRLTAAL 659
Query: 661 GRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYS 720
GR+++VANT G FA+L LGGFV+SR+++KKWW W YW SPM Y QNAI NEFLG S
Sbjct: 660 GRNIIVANTVGAFAMLTALVLGGFVISRDNVKKWWIWGYWFSPMMYVQNAISVNEFLGSS 719
Query: 721 WKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKP 780
W F PNS + +GV +LKSRG F AYWYW+G GAL G+I LFN FT+A+ +L+ KP
Sbjct: 720 WNHFPPNSTKPLGVTLLKSRGLFPEAYWYWIGFGALTGYIFLFNFLFTLALKYLDPFGKP 779
Query: 781 RAVITEESESNKQDNRIRGTVQLSA-------RGESGEDI-SGRNSSSKSLILTEAQGSH 832
+A+I++E+ S K R ++LS+ RG + + S R SS++ L+ A
Sbjct: 780 QAIISKEAYSEKTAVRTGEFIELSSKEKNFQERGSASHRVASSRTSSARVSSLSNA--FE 837
Query: 833 PKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMG 892
KRGM+LPF+P S+TF +V Y+V MPQEMK QG+ ED+L LL G+SGAFRPGVLTALMG
Sbjct: 838 NSKRGMVLPFQPLSITFADVRYAVQMPQEMKTQGITEDRLELLKGVSGAFRPGVLTALMG 897
Query: 893 VSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYES 952
VSGAGKTTLMDVL+GRKTGGYI GNITISGYPKKQETFARISGYCEQ DIHSP VTVYES
Sbjct: 898 VSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQTDIHSPHVTVYES 957
Query: 953 LLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVE 1012
LLYSAWLRLPPEVDS+TR MF+EEVMELVEL L ++LVGLPGV+GLS EQRKRLT+AVE
Sbjct: 958 LLYSAWLRLPPEVDSDTRNMFVEEVMELVELTSLREALVGLPGVNGLSVEQRKRLTVAVE 1017
Query: 1013 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1072
LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIFDAFDEL L+
Sbjct: 1018 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLL 1077
Query: 1073 KRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFND 1132
KRGG+EIYVGP+GRH+C LI YFE I G+ KIKDGYNPATWMLEVT ++QEVALGVDF+D
Sbjct: 1078 KRGGEEIYVGPVGRHACHLIKYFEDIEGIPKIKDGYNPATWMLEVTTTAQEVALGVDFSD 1137
Query: 1133 IFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYT 1192
I++ SELYR+NKALI+ELS+P PGSKDLYFPTQYS+S TQ MACLWKQHWSYWRNP YT
Sbjct: 1138 IYKNSELYRKNKALIKELSRPLPGSKDLYFPTQYSKSFTTQCMACLWKQHWSYWRNPPYT 1197
Query: 1193 AVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVE 1252
AVR F FIA++ G++FW +G+K + QD+FNAMGSM+ A++FLG ++VQPVV++E
Sbjct: 1198 AVRLVFATFIALMFGTIFWKLGTKRSRRQDIFNAMGSMYAAVLFLGFHNSTAVQPVVAIE 1257
Query: 1253 RTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFF 1312
RTVFYRE+AAGMYS L +A Q MIE+PYI +Q+++Y VIVYAM+G++WT KF WY FF
Sbjct: 1258 RTVFYRERAAGMYSALAYAFGQVMIEVPYILIQTIIYGVIVYAMVGFEWTISKFFWYLFF 1317
Query: 1313 MYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWAN 1372
MY TLL FTFYGM+ VAITPNH+IAAIVS+ FY IW +F GF++PR RIP+WWRWYYWA
Sbjct: 1318 MYFTLLYFTFYGMMNVAITPNHNIAAIVSSAFYAIWNIFSGFIVPRTRIPIWWRWYYWAC 1377
Query: 1373 PVAWTLYGLIASQFGDVEDQMENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVF 1432
P+AWTLYGL+ASQFGD++++++ GETV+HFLR YFGF+HDF+G+VA VL LFGF+F
Sbjct: 1378 PIAWTLYGLVASQFGDIKEELDTGETVEHFLRSYFGFQHDFVGIVAVVLVGICVLFGFLF 1437
Query: 1433 ALGIKQLNFQRR 1444
A I+ NFQRR
Sbjct: 1438 AFSIRTFNFQRR 1449
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482642|ref|XP_002285020.2| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2168 bits (5617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1036/1444 (71%), Positives = 1212/1444 (83%), Gaps = 18/1444 (1%)
Query: 3 GSHDSYLASTSLRGNISR-WRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLL 61
+ D+Y AS SLR N S WR+S FS+S R+EDDEEALKWAALEKLPTYNRLR+GLL
Sbjct: 2 ATADTYRASGSLRRNGSSIWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRRGLL 61
Query: 62 TTSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRY 121
S GEA E+D+ NLG Q+++ L+ +LVKV E DNEKFLLKLK+RIDRVGID+P++EVR+
Sbjct: 62 MGSEGEASEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRF 121
Query: 122 EHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMT 181
EHL ++ EA++ S+ALPSF F E I N + ILPS+K+ TIL DVSGIIKP R+T
Sbjct: 122 EHLTIDAEAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLT 181
Query: 182 LLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEM 241
LLLGPP+SGKTTLLLALAGKLD +LKV GRVTYNGH M EFVP+RTAAYISQHD HIGEM
Sbjct: 182 LLLGPPSSGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEM 241
Query: 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDY 301
TVRETLAFSARCQGVG RY++L EL+RRE A IKPDPD+DV+MKA ATEGQ+ NV+TDY
Sbjct: 242 TVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDY 301
Query: 302 YLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 361
LK+LGL++CADTMVGDEMIRGISGG+RKRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQ
Sbjct: 302 TLKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQ 361
Query: 362 IVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGF 421
I+N LKQ +HI +GTAVISLLQPAPETY+LFDDIILLSD QIVYQGPRE VLEFFES+GF
Sbjct: 362 IINSLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGF 421
Query: 422 KCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTP 481
KCP+RKG ADFLQEVTSRKDQ QYW K+ PY FVTV+EFAEAFQSFH+G+K++DEL +P
Sbjct: 422 KCPERKGEADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASP 481
Query: 482 FDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLF 541
FD++KSH AALTT+ YG K+ELL +SRE LLMKRNSFVYIFKLTQ++ VA+ MTLF
Sbjct: 482 FDRAKSHPAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLF 541
Query: 542 LRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYA 601
LRT+M+K+S DG IY GALFF M+MFNG+AE++MTIAKLPVFYKQRDF F+P WAYA
Sbjct: 542 LRTEMNKNSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYA 601
Query: 602 IPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATG 661
+P+W+LKIPI+F+EVAVWVF+TYYVIG DPN R F+QYLL L VNQMAS LFR IAA G
Sbjct: 602 LPTWVLKIPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAG 661
Query: 662 RSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSW 721
R+M+VA+TFG FA+L+L ALGGF+LS +++KKWW W YW SP+ YAQNAIV NEFLG SW
Sbjct: 662 RNMIVASTFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSW 721
Query: 722 KKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPR 781
K NS ES+G+ VLKSRGFF A+WYW+G GAL GFI +FN +T+ + +LN EKP+
Sbjct: 722 SKNVTNSTESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQ 781
Query: 782 AVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILP 841
AVITEES++ K +G++ ++ + ++ A+G+H KK+GM+LP
Sbjct: 782 AVITEESDNAKT-------------ATTGDET---HTWGEHMVEAIAEGNHNKKKGMVLP 825
Query: 842 FEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTL 901
F+PHS+TFD++ YSVDMP+EMK QG LED+L LL G+SGAFRPGVLTALMGVSGAGKTTL
Sbjct: 826 FQPHSITFDDIRYSVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTL 885
Query: 902 MDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL 961
MDVL+GRKTGGYI GNI+ISGYPKKQETFARISGYCEQNDIHSP VTV+ESLLYSAWLRL
Sbjct: 886 MDVLAGRKTGGYIEGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHESLLYSAWLRL 945
Query: 962 PPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1021
P +V+SETRKMFIEEVMELVEL PL +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIF
Sbjct: 946 PSDVNSETRKMFIEEVMELVELTPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1005
Query: 1022 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1081
MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL LMKRGGQEIYV
Sbjct: 1006 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYV 1065
Query: 1082 GPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYR 1141
GPLGRHS LI+YFE I GV KIKDGYNPATWMLEVT +QE LGVDF +I++ S+LYR
Sbjct: 1066 GPLGRHSSHLINYFEGIEGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTEIYKNSDLYR 1125
Query: 1142 RNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAF 1201
RNK LI+ELS+P PG+KDLYF TQYSQ FTQF+ACLWKQ WSYWRNP YTAVRF FT F
Sbjct: 1126 RNKDLIKELSQPAPGTKDLYFATQYSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTTF 1185
Query: 1202 IAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKA 1261
IA++ G +FWD+G++ + QDL NAMGSM+ A++FLG+Q SVQPV+ VERTVFYRE+A
Sbjct: 1186 IALMFGLIFWDLGTRRTRQQDLLNAMGSMYAAVLFLGVQNAQSVQPVIVVERTVFYRERA 1245
Query: 1262 AGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFT 1321
AGMYS LP+A QA++EIPY+F Q+VVY VIVY M+G++WTA KF WY FFM+ TLL FT
Sbjct: 1246 AGMYSALPYAFGQALVEIPYVFAQAVVYGVIVYGMIGFEWTATKFFWYLFFMFCTLLYFT 1305
Query: 1322 FYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGL 1381
FYGM+ VA TPN HIA+I++ FY +W LF GF++PR RIPVWWRWY W PVAWTLYGL
Sbjct: 1306 FYGMMAVAATPNQHIASIIAATFYTLWNLFSGFIVPRNRIPVWWRWYCWICPVAWTLYGL 1365
Query: 1382 IASQFGDVEDQ-MENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLN 1440
+ASQFGD++ +EN +TVK FL DYFGFKHDFLG+VA V+ FV LF F+FA IK N
Sbjct: 1366 VASQFGDIQSTLLENNQTVKQFLDDYFGFKHDFLGVVAAVVVGFVVLFLFIFAYAIKAFN 1425
Query: 1441 FQRR 1444
FQ+R
Sbjct: 1426 FQKR 1429
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743343|emb|CBI36210.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2167 bits (5616), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1038/1452 (71%), Positives = 1210/1452 (83%), Gaps = 34/1452 (2%)
Query: 3 GSHDSYL--------ASTSLRGNISR-WRTSSVGAFSKSLREEDDEEALKWAALEKLPTY 53
G DSYL AS SLR N S WR+S FS+S R+EDDEEALKWAALEKLPTY
Sbjct: 215 GEGDSYLIFSFFGLQASGSLRRNGSSIWRSSGADVFSRSSRDEDDEEALKWAALEKLPTY 274
Query: 54 NRLRKGLLTTSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGID 113
NRLR+GLL S GEA E+D+ NLG Q+++ L+ +LVKV E DNEKFLLKLK+RIDRVGID
Sbjct: 275 NRLRRGLLMGSEGEASEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGID 334
Query: 114 LPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSG 173
+P++EVR+EHL ++ EA++ S+ALPSF F E I N + ILPS+K+ TIL DVSG
Sbjct: 335 VPEIEVRFEHLTIDAEAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSG 394
Query: 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQ 233
IIKP R+TLLLGPP+SGKTTLLLALAGKLD +LKV GRVTYNGH M EFVP+RTAAYISQ
Sbjct: 395 IIKPRRLTLLLGPPSSGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQ 454
Query: 234 HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQ 293
HD HIGEMTVRETLAFSARCQGVG RY++L EL+RRE A IKPDPD+DV+MKA ATEGQ
Sbjct: 455 HDTHIGEMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQ 514
Query: 294 EANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTG 353
+ NV+TDY LK+LGL++CADTMVGDEMIRGISGG+RKRVTTGEM+VGP+ ALFMDEISTG
Sbjct: 515 KENVVTDYTLKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTG 574
Query: 354 LDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
LDSSTTFQI+N LKQ +HI +GTAVISLLQPAPETY+LFDDIILLSD QIVYQGPRE VL
Sbjct: 575 LDSSTTFQIINSLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVL 634
Query: 414 EFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQK 473
EFFES+GFKCP+RKG ADFLQEVTSRKDQ QYW K+ PY FVTV+EFAEAFQSFH+G+K
Sbjct: 635 EFFESIGFKCPERKGEADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRK 694
Query: 474 ISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSV 533
++DEL +PFD++KSH AALTT+ YG K+ELL +SRE LLMKRNSFVYIFKLTQ++ V
Sbjct: 695 VADELASPFDRAKSHPAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVV 754
Query: 534 ALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFR 593
A+ MTLFLRT+M+K+S DG IY GALFF M+MFNG+AE++MTIAKLPVFYKQRDF
Sbjct: 755 AVIAMTLFLRTEMNKNSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFL 814
Query: 594 FFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASAL 653
F+P WAYA+P+W+LKIPI+F+EVAVWVF+TYYVIG DPN R F+QYLL L VNQMAS L
Sbjct: 815 FYPAWAYALPTWVLKIPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGL 874
Query: 654 FRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVA 713
FR IAA GR+M+VA+TFG FA+L+L ALGGF+LS +++KKWW W YW SP+ YAQNAIV
Sbjct: 875 FRFIAAAGRNMIVASTFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVV 934
Query: 714 NEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITF 773
NEFLG SW K NS ES+G+ VLKSRGFF A+WYW+G GAL GFI +FN +T+ + +
Sbjct: 935 NEFLGKSWSKNVTNSTESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNY 994
Query: 774 LNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHP 833
LN EKP+AVITEES++ K ++++ ++ A+G+H
Sbjct: 995 LNPFEKPQAVITEESDNAK------------------------TATTEHMVEAIAEGNHN 1030
Query: 834 KKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGV 893
KK+GM+LPF+PHS+TFD++ YSVDMP+EMK QG LED+L LL G+SGAFRPGVLTALMGV
Sbjct: 1031 KKKGMVLPFQPHSITFDDIRYSVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMGV 1090
Query: 894 SGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESL 953
SGAGKTTLMDVL+GRKTGGYI GNI+ISGYPKKQETFARISGYCEQNDIHSP VTV+ESL
Sbjct: 1091 SGAGKTTLMDVLAGRKTGGYIEGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHESL 1150
Query: 954 LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVEL 1013
LYSAWLRLP +V+SETRKMFIEEVMELVEL PL +LVGLPGV+GLSTEQRKRLTIAVEL
Sbjct: 1151 LYSAWLRLPSDVNSETRKMFIEEVMELVELTPLRDALVGLPGVNGLSTEQRKRLTIAVEL 1210
Query: 1014 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1073
VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL LMK
Sbjct: 1211 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1270
Query: 1074 RGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDI 1133
RGGQEIYVGPLGRHS LI+YFE I GV KIKDGYNPATWMLEVT +QE LGVDF +I
Sbjct: 1271 RGGQEIYVGPLGRHSSHLINYFEGIEGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTEI 1330
Query: 1134 FRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTA 1193
++ S+LYRRNK LI+ELS+P PG+KDLYF TQYSQ FTQF+ACLWKQ WSYWRNP YTA
Sbjct: 1331 YKNSDLYRRNKDLIKELSQPAPGTKDLYFATQYSQPFFTQFLACLWKQRWSYWRNPPYTA 1390
Query: 1194 VRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVER 1253
VRF FT FIA++ G +FWD+G++ + QDL NAMGSM+ A++FLG+Q SVQPV+ VER
Sbjct: 1391 VRFLFTTFIALMFGLIFWDLGTRRTRQQDLLNAMGSMYAAVLFLGVQNAQSVQPVIVVER 1450
Query: 1254 TVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFM 1313
TVFYRE+AAGMYS LP+A QA++EIPY+F Q+VVY VIVY M+G++WTA KF WY FFM
Sbjct: 1451 TVFYRERAAGMYSALPYAFGQALVEIPYVFAQAVVYGVIVYGMIGFEWTATKFFWYLFFM 1510
Query: 1314 YITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANP 1373
+ TLL FTFYGM+ VA TPN HIA+I++ FY +W LF GF++PR RIPVWWRWY W P
Sbjct: 1511 FCTLLYFTFYGMMAVAATPNQHIASIIAATFYTLWNLFSGFIVPRNRIPVWWRWYCWICP 1570
Query: 1374 VAWTLYGLIASQFGDVEDQ-MENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVF 1432
VAWTLYGL+ASQFGD++ +EN +TVK FL DYFGFKHDFLG+VA V+ FV LF F+F
Sbjct: 1571 VAWTLYGLVASQFGDIQSTLLENNQTVKQFLDDYFGFKHDFLGVVAAVVVGFVVLFLFIF 1630
Query: 1433 ALGIKQLNFQRR 1444
A IK NFQ+R
Sbjct: 1631 AYAIKAFNFQKR 1642
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572799|ref|XP_002527332.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223533332|gb|EEF35084.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2164 bits (5608), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1025/1429 (71%), Positives = 1198/1429 (83%), Gaps = 12/1429 (0%)
Query: 21 WRTSSV-GAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLL-TTSRGEAFEVDVSNLGL 78
W +++ FS S REEDDEEALKWAALE+LPTY+RLRKG+L + SR A E+DV +LG
Sbjct: 22 WTNNTIPDIFSMSSREEDDEEALKWAALERLPTYDRLRKGILFSASRNGANEIDVGSLGF 81
Query: 79 QQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAYLASKALP 138
+R+ L+ +L++V E DNE+FLLKLK+RIDRVGI+LP +EVR+E+LN+E EA++ S+ALP
Sbjct: 82 HERKLLLERLLRVVEEDNEEFLLKLKNRIDRVGIELPTIEVRFENLNIEAEAFVGSRALP 141
Query: 139 SFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLAL 198
+F F +FE N L ILPSRKK LTILKDVSG+IKP RMTLLLGPP+SGKTTLLLAL
Sbjct: 142 TFVNFSINLFEGFLNSLHILPSRKKQLTILKDVSGVIKPSRMTLLLGPPSSGKTTLLLAL 201
Query: 199 AGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGS 258
AGKLD +LK SG VTYNGH M EF+P+ TAAYISQHD HIGEMTVRETL+FS RCQGVG+
Sbjct: 202 AGKLDPNLKFSGNVTYNGHGMNEFIPQSTAAYISQHDLHIGEMTVRETLSFSVRCQGVGT 261
Query: 259 RYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318
R ++L EL+RRE A IKPDPDIDV+MKA+ATEGQE NV+TDY LK+LGLEVCADT+VGD
Sbjct: 262 RNDMLVELSRREKAANIKPDPDIDVFMKAVATEGQETNVVTDYVLKILGLEVCADTLVGD 321
Query: 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV 378
EM+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN LKQ +HI GTAV
Sbjct: 322 EMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLKQTIHILDGTAV 381
Query: 379 ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTS 438
ISLLQPAPETYDLFDDIILLSDGQIVYQGPRE VLEFFE MGFKCP+RKGVADFLQEVTS
Sbjct: 382 ISLLQPAPETYDLFDDIILLSDGQIVYQGPREHVLEFFEYMGFKCPERKGVADFLQEVTS 441
Query: 439 RKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYG 498
+ DQKQYW K++PY FVTV+EF+EAFQS+ VGQ I EL TPFDKSKSH AAL YG
Sbjct: 442 KNDQKQYWVQKDQPYSFVTVQEFSEAFQSYDVGQIIGQELSTPFDKSKSHPAALAARKYG 501
Query: 499 AGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYA 558
K ELLK C +RE LLMKRNSFVYIFKLTQ+ +A+ MTLFLRT+MH+ LTD G+Y
Sbjct: 502 VDKMELLKACFAREYLLMKRNSFVYIFKLTQLVVMAIISMTLFLRTEMHREDLTDAGVYL 561
Query: 559 GALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAV 618
GALFF+ +MFNG++E+SMTIAKLPVFYKQRD +F+PPWAYA+P+WILKIPI+F EV V
Sbjct: 562 GALFFSLIAIMFNGMSELSMTIAKLPVFYKQRDLQFYPPWAYALPTWILKIPITFFEVGV 621
Query: 619 WVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVL 678
WVF+TYYVIG DPN R FKQY L L VNQMAS LFR IAA GR+M+VANTFG+FALL +
Sbjct: 622 WVFITYYVIGFDPNVERLFKQYFLLLIVNQMASGLFRFIAAVGRNMIVANTFGSFALLTV 681
Query: 679 FALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPN--SYESIGVQV 736
FALGG VLSR+DIKKWW W YW SPM Y QNA+VANEFLG SW N S +S+GVQ
Sbjct: 682 FALGGIVLSRDDIKKWWTWGYWISPMMYGQNALVANEFLGESWNHVPANSTSTDSLGVQF 741
Query: 737 LKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNR 796
+KSRGFF HAYWYW+G+GAL GF +LFNL FT+A+T LN EKP AVI++E E + +R
Sbjct: 742 IKSRGFFPHAYWYWIGIGALTGFTILFNLCFTLALTHLNPYEKPHAVISDEPE---RSDR 798
Query: 797 IRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSV 856
G +QLS G S I+ I + + KK+GM+LPFEPHS+TF++V+YSV
Sbjct: 799 TGGAIQLSQNGSSHRTITENGVG----IRMTDEANQNKKKGMVLPFEPHSITFNDVMYSV 854
Query: 857 DMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITG 916
DMPQEMK QG+ +DKLVLL G+SGAF+PGVLTALMGVSGAGKTTLMDVL+GRKTGGYI G
Sbjct: 855 DMPQEMKSQGIADDKLVLLKGVSGAFKPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG 914
Query: 917 NITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE 976
+I ISGYPKKQ+TFARISGYCEQNDIHSP VTVYESL+YSAWLRL PEVD ETRKMF+ E
Sbjct: 915 DIRISGYPKKQDTFARISGYCEQNDIHSPHVTVYESLIYSAWLRLAPEVDPETRKMFVNE 974
Query: 977 VMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
VMELVEL PL Q+LVGLPGV+GLSTEQRKRLTI+VELVANPSIIFMDEPTSGLDARAAAI
Sbjct: 975 VMELVELNPLRQALVGLPGVNGLSTEQRKRLTISVELVANPSIIFMDEPTSGLDARAAAI 1034
Query: 1037 VMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFE 1096
VMRTVRNTVDTGRTVVCTIHQP ID+F+AFDELFLMKRGG+EIYVGPLGRHSC +I YFE
Sbjct: 1035 VMRTVRNTVDTGRTVVCTIHQPSIDLFEAFDELFLMKRGGEEIYVGPLGRHSCHMIDYFE 1094
Query: 1097 AIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPG 1156
I G K+KDGYNPATWMLEVT+S+QE++LGVDF I++ SELYRRNKA+I+ELS PG
Sbjct: 1095 VIEGASKVKDGYNPATWMLEVTSSAQELSLGVDFATIYKNSELYRRNKAIIKELSTSVPG 1154
Query: 1157 SKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSK 1216
SKDLYFPTQYSQS TQ +ACLWKQ SYWRNP YTAVRF FT FIA++ G++FWD+GSK
Sbjct: 1155 SKDLYFPTQYSQSFLTQCIACLWKQRLSYWRNPPYTAVRFLFTTFIALMFGTMFWDLGSK 1214
Query: 1217 TRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAM 1276
TR QD+FN+ GSM+ A++FLG Q +SVQPVV++ERTVFYRE+AAGMYS LP+A AQ +
Sbjct: 1215 TRTQQDIFNSAGSMYAAVVFLGTQNAASVQPVVAIERTVFYRERAAGMYSALPYAYAQVL 1274
Query: 1277 IEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHI 1336
+EIPYIF Q+VVY ++ Y+M+G++WTA KF WY FFMY TL+ FT+YGM+ VA+TPNHHI
Sbjct: 1275 VEIPYIFAQAVVYGLLTYSMIGFEWTAAKFFWYIFFMYFTLMYFTYYGMMAVAVTPNHHI 1334
Query: 1337 AAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQMENG 1396
A++VS+ FYGIW LF GF++PR R+PVWWRWYYW PV+WTLYGLI SQF D++D E G
Sbjct: 1335 ASVVSSAFYGIWNLFSGFIVPRTRMPVWWRWYYWVCPVSWTLYGLIGSQFSDIKDAFEGG 1394
Query: 1397 -ETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1444
+TV+ F+R+Y+G +HDFLG+VA V+ LF F+FA+ IK NFQRR
Sbjct: 1395 SQTVEDFVREYYGIRHDFLGVVAAVIVGTTVLFAFIFAVSIKSFNFQRR 1443
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743360|emb|CBI36227.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2163 bits (5605), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1057/1447 (73%), Positives = 1221/1447 (84%), Gaps = 12/1447 (0%)
Query: 8 YLASTSLRGNISR-WRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRG 66
Y A SLR + S WR S S+S R+EDDEEALKWAALEKLPTYNR+RKGLL S G
Sbjct: 7 YRAGGSLRKDSSSIWRNSGEEVSSRSSRDEDDEEALKWAALEKLPTYNRMRKGLLMGSAG 66
Query: 67 EAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNV 126
EA EVD+ NLG Q+++ L+ +LVK+ E DNEKFLLKL++RIDRVGIDLP++EVR+EHL +
Sbjct: 67 EASEVDIHNLGFQEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIEVRFEHLTI 126
Query: 127 EGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGP 186
+ EA++ S+ALPSF EDI N L ILPSRKK TIL DVSGIIKP RMTLLLGP
Sbjct: 127 DAEAHVGSRALPSFINSAFNQIEDILNTLRILPSRKKKFTILHDVSGIIKPRRMTLLLGP 186
Query: 187 PASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRET 246
P+SGKTTLLLAL+GKLDSSLKV+G+VTYNGH M EFVP+RTA YISQHD HIGEMTVRET
Sbjct: 187 PSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRET 246
Query: 247 LAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL 306
LAFSARCQGVG RY++L EL+RRE A IKPDPDIDV+MKA ATEGQ+ NVITDY LK+L
Sbjct: 247 LAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKAAATEGQKENVITDYTLKIL 306
Query: 307 GLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 366
GLEVCADT+VGD+MIRGISGG+RKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN L
Sbjct: 307 GLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSL 366
Query: 367 KQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKR 426
+Q +HI +GTA+ISLLQPAPETYDLFDDIILLSD QIVYQGPRE VL+FFESMGF+CP+R
Sbjct: 367 RQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGFRCPER 426
Query: 427 KGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSK 486
KGVADFLQEVTSRKDQ+QYW K++PY FVTV++FAEAFQSFH G+K+ DEL TPFDK+K
Sbjct: 427 KGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKQFAEAFQSFHSGRKVGDELATPFDKTK 486
Query: 487 SHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKM 546
SH AAL TE YG K+ELL CISRE LMKRNSFVYI +LTQ+ +A MT+FLRT+M
Sbjct: 487 SHPAALKTEKYGVRKKELLDACISREYWLMKRNSFVYILQLTQLIIMAAISMTIFLRTEM 546
Query: 547 HKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWI 606
HK+S DG IY GALFF M+MFNG++E++MTIAKLPVFYKQR F+P WAYA+ SWI
Sbjct: 547 HKNSTDDGSIYMGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYALSSWI 606
Query: 607 LKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVV 666
LKIPI+F+EVAVWVF++YYVIG DPN GR FKQYLL + VNQMASALFR IAA GR+M+V
Sbjct: 607 LKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIV 666
Query: 667 ANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSW-KKFT 725
ANTFG+F+LL+LFALGGFVLSRE++KKWW W YW SP+ YAQNAIV NEFLG SW K +
Sbjct: 667 ANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSS 726
Query: 726 PNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVIT 785
NS ES+GV VLKSRGFF AYWYW+G GAL GFIL+FN +T+A+T+LN EKP+AVIT
Sbjct: 727 TNSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFEKPQAVIT 786
Query: 786 EESESNKQDNRI------RGTV-QLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGM 838
EESE++K +I RG++ Q ++ E G IS +SS ++ + EA+ KRGM
Sbjct: 787 EESENSKTGGKIELSSHRRGSIDQTASTDEIGRSISSTSSSVRAEAIAEAR--RNTKRGM 844
Query: 839 ILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGK 898
+LPF+P S+TFD++ YSVDMP+EMK QGVLED+L LL G+SGAFRPGVLTALMGVSGAGK
Sbjct: 845 VLPFQPLSITFDDIRYSVDMPEEMKSQGVLEDRLKLLKGVSGAFRPGVLTALMGVSGAGK 904
Query: 899 TTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAW 958
TTLMDVL+GRKTGGYI GNI ISGYPKKQETF RISGYCEQNDIHSP VT++ESLLYSAW
Sbjct: 905 TTLMDVLAGRKTGGYIEGNINISGYPKKQETFTRISGYCEQNDIHSPHVTIHESLLYSAW 964
Query: 959 LRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1018
LRLP +VDS+TRKMFIE+VMELVEL PL SLVGLPGV+GLSTEQRKRLTIAVELVANPS
Sbjct: 965 LRLPADVDSKTRKMFIEKVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPS 1024
Query: 1019 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1078
IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL L+KRGGQE
Sbjct: 1025 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQE 1084
Query: 1079 IYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSE 1138
IYVG LGRHS LI YFE I GV KIK GYNPATWMLEVT S+QE LGVDF +I++ S
Sbjct: 1085 IYVGLLGRHSSCLIKYFEGIEGVSKIKGGYNPATWMLEVTTSAQEFLLGVDFTEIYKNSN 1144
Query: 1139 LYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFF 1198
LYRRNK LI+ELS+P PGSKDLYFPTQYSQS FTQ MACLWKQ SYWRNP YTAVRFFF
Sbjct: 1145 LYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFF 1204
Query: 1199 TAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYR 1258
T FIA++ G++FWD+G+K K QDL NAMGSM+ A++FLG+Q SSVQPVV+VERTVFYR
Sbjct: 1205 TTFIALIFGTMFWDLGTKRTKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYR 1264
Query: 1259 EKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLL 1318
E+AAG+YS +P+A A A++EIPY+F Q+VVY VIVYAM+G++WTA KF WY FFM+ TLL
Sbjct: 1265 ERAAGIYSAMPYAFAHALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLL 1324
Query: 1319 LFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTL 1378
FTFYGM+ VA TPN HIAAIV+ FYG+W LF GF++PR RIPVWWRWYYWA PVAWTL
Sbjct: 1325 YFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTL 1384
Query: 1379 YGLIASQFGDVEDQMEN-GETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIK 1437
YGL+ SQFGD++D+ E+ G+TV+ +L DYFGF+HDFLG+VA V+ F LF F+FA IK
Sbjct: 1385 YGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVLFLFIFAFAIK 1444
Query: 1438 QLNFQRR 1444
NFQRR
Sbjct: 1445 AFNFQRR 1451
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1444 | ||||||
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.981 | 0.975 | 0.572 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.989 | 0.972 | 0.549 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.976 | 0.992 | 0.540 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.560 | 0.568 | 0.601 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.554 | 0.550 | 0.517 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.527 | 0.527 | 0.536 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.422 | 0.430 | 0.632 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.433 | 0.438 | 0.596 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.602 | 0.6 | 0.438 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.601 | 0.615 | 0.427 | 0.0 |
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4293 (1516.3 bits), Expect = 0., P = 0.
Identities = 834/1456 (57%), Positives = 1046/1456 (71%)
Query: 4 SHDSYL--ASTSLRGNISRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLL 61
SH S AS S R ++ T V F +S R E+D+ L+WAALE+LPTY+RLRKG+L
Sbjct: 22 SHRSLAGAASKSFR-DVFAPPTDDV--FGRSDRREEDDVELRWAALERLPTYDRLRKGML 78
Query: 62 --TTSRGEAF--EVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKV 117
T G+ +VDV+NL ++++ L+ ++K E DNEKFL +L+ R DRVGI++PK+
Sbjct: 79 PQTMVNGKIGLEDVDVTNLAPKEKKHLMEMILKFVEEDNEKFLRRLRERTDRVGIEVPKI 138
Query: 118 EVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKP 177
EVRYE+L+VEG+ AS+ALP+ E I +LPS+K+ + ILKD+SGIIKP
Sbjct: 139 EVRYENLSVEGDVRSASRALPTLFNVTLNTIESILGLFHLLPSKKRKIEILKDISGIIKP 198
Query: 178 GRMTLLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGHDMGEFVPERTAAYISQHDNH 237
RMTLLLGPP +SGR+TY GH+ EFVP++T AYISQHD H
Sbjct: 199 SRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLH 258
Query: 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANV 297
GEMTVRE+L FS RC GVG+RY+LLTEL+RRE EAGIKPDP+ID +MK+IA GQE ++
Sbjct: 259 FGEMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQETSL 318
Query: 298 ITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGL++CADT+VGD M RGISGG+RKR+TTGEM+VGPA ALFMDEISTGLDSS
Sbjct: 319 VTDYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSS 378
Query: 358 TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFE 417
TTFQI ++Q VHI T VISLLQPAPET++LFDDIILLS+GQIVYQG R+ VLEFFE
Sbjct: 379 TTFQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFE 438
Query: 418 SMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDE 477
MGFKCP+RKG+ADFLQEVTS+KDQ+QYW +E PY +V+V +F+ F SFH GQ+++ E
Sbjct: 439 YMGFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASE 498
Query: 478 LRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAF 537
R P+DK+K+H AAL T+ YG ++L K C RE LLMKRNSFVY+FK QI+ ++L
Sbjct: 499 FRVPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIA 558
Query: 538 MTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPP 597
MT++ RT+MH ++ DG + GALFF+ +MFNG+AE++ T+ +LPVF+KQRDF F+PP
Sbjct: 559 MTVYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPP 618
Query: 598 WAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLI 657
WA+A+P ++LKIP+S +E +W+ LTYY IG P+A RFF+Q L + VNQMA +LFR +
Sbjct: 619 WAFALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFL 678
Query: 658 AATGRSMVVANXXXXXXXXXXXXXXXXXXSREDIKKWWKWAYWCSPMSYAQNAIVANEFL 717
A GR+ V+AN S++DI W W Y+ SPM Y Q A+V NEFL
Sbjct: 679 GALGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVINEFL 738
Query: 718 GYSWKKFTPNS-----YESIGVQVLKSRGFFAHAYWYWXXXXXXXXXXXXXXXXXTMAIT 772
W +PN+ +++G +LKSRGFF YW+W +A+
Sbjct: 739 DERWG--SPNNDTRINAKTVGEVLLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALM 796
Query: 773 FLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSH 832
+LN L +A E +K +G S G G S++ + SH
Sbjct: 797 YLNPLGNSKATTVVEEGKDKH----KG----SHSGTGG-----------SVVELTSTSSH 837
Query: 833 PKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMG 892
K+GM+LPF+P SL F+ V Y VDMP EMK QGV D+L LL + GAFRPGVLTAL+G
Sbjct: 838 GPKKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQGVEGDRLQLLRDVGGAFRPGVLTALVG 897
Query: 893 VSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYES 952
VSGAGKTTLMDVL+GRKTGGY+ G+I ISGYPK Q TFAR+SGYCEQNDIHSP VTVYES
Sbjct: 898 VSGAGKTTLMDVLAGRKTGGYVEGSINISGYPKNQATFARVSGYCEQNDIHSPHVTVYES 957
Query: 953 LLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVE 1012
L+YSAWLRL ++D++TR+MF+EEVMELVELKPL S+VGLPGV GLSTEQRKRLTIAVE
Sbjct: 958 LIYSAWLRLSADIDTKTREMFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVE 1017
Query: 1013 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1072
LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF++FDEL LM
Sbjct: 1018 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLM 1077
Query: 1073 KRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFND 1132
KRGGQ IY G LG HS +L+ YFEAI GV KIKDGYNPATWML+VT S E + VDF
Sbjct: 1078 KRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATWMLDVTTPSMESQMSVDFAQ 1137
Query: 1133 IFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYT 1192
IF S + RRN+ LI+ELS P PGS DLYF T+Y+Q TQ AC WK +WS WR PQY
Sbjct: 1138 IFVNSSVNRRNQELIKELSTPPPGSNDLYFRTKYAQPFSTQTKACFWKMYWSNWRYPQYN 1197
Query: 1193 AVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVE 1252
A+RF T I VL G LFW G+K K QDL N G+M+ A++FLG ++VQP V++E
Sbjct: 1198 AIRFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNFFGAMYAAVLFLGATNAATVQPAVAIE 1257
Query: 1253 RTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFF 1312
RTVFYREKAAGMYS +P+A++Q +EI Y +Q+ VY +I+Y+M+GYDWT KF W++++
Sbjct: 1258 RTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGYDWTVVKFFWFYYY 1317
Query: 1313 MYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWAN 1372
M + FT YGM+ VA+TPN+ IA I + F W LF GF+IPRP+IP+WWRWYYWA+
Sbjct: 1318 MLTCFVYFTLYGMMLVALTPNYQIAGICLSFFLSFWNLFSGFLIPRPQIPIWWRWYYWAS 1377
Query: 1373 PVAWTLYGLIASQFGDVEDQMEN---GE-TVKHFLRDYFGFKHDFLGLVAGVLTCFVALF 1428
PVAWTLYG+I SQ GD + + G+ ++K L++ FGF +DFL +VA V ++ +F
Sbjct: 1378 PVAWTLYGIITSQVGDRDSIVHITGVGDMSLKTLLKNGFGFDYDFLPVVAVVHIAWILIF 1437
Query: 1429 GFVFALGIKQLNFQRR 1444
F FA GIK LNFQRR
Sbjct: 1438 LFAFAYGIKFLNFQRR 1453
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4208 (1486.3 bits), Expect = 0., P = 0.
Identities = 799/1453 (54%), Positives = 1040/1453 (71%)
Query: 13 SLRGNISRWRTSSVGAFSKSLRE----EDDEEALKWAALEKLPTYNRLRKGLLTTS-RGE 67
S+ ++SR + FS R DDEEALKWAA+EKLPTY+RLR L+ +
Sbjct: 20 SISRSVSRASRNIEDIFSSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDD 79
Query: 68 AF-------EVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVR 120
+ EVDV+ L + RQ+ I+ + KV E DNE+ L KL++RIDRVGI LP VEVR
Sbjct: 80 VYGNQLMSKEVDVTKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVR 139
Query: 121 YEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRM 180
YEHL ++ + Y +++LP+ + E +GI ++K LTILKD+SG+IKPGRM
Sbjct: 140 YEHLTIKADCYTGNRSLPTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRM 199
Query: 181 TLLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGE 240
TLLLGPP VSG +TYNG+ + EFVP +T+AYISQ+D H+G
Sbjct: 200 TLLLGPPSSGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGI 259
Query: 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITD 300
MTV+ETL FSARCQGVG+RY+LL ELARRE +AGI P+ D+D++MKA A +G + +++TD
Sbjct: 260 MTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTD 319
Query: 301 YYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTF 360
Y LK+LGL++C DT+VGD+M+RGISGG++KRVTTGEM+VGP LFMDEISTGLDSSTTF
Sbjct: 320 YTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTF 379
Query: 361 QIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMG 420
QIV CL+Q VH+N T ++SLLQPAPET+DLFDDIIL+S+GQIVYQGPR+ +LEFFES G
Sbjct: 380 QIVKCLQQIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFG 439
Query: 421 FKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480
FKCP+RKG ADFLQEVTS+KDQ+QYW + +PY ++ V EFA ++SFHVG K+S+EL
Sbjct: 440 FKCPERKGTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAV 499
Query: 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTL 540
PFDKS+ H+AAL + Y KRELLK+C +E LLM+RN+F Y+FK QI +A TL
Sbjct: 500 PFDKSRGHKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTL 559
Query: 541 FLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAY 600
FLRT+M+ + D +Y GAL F + MFNG AE++M +++LPVFYKQRD F+P W +
Sbjct: 560 FLRTEMNTRNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTF 619
Query: 601 AIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAAT 660
++P+++L IP S LE W+ +TYY IG P+A RFFKQ+LL + QMA++LFRLIA+
Sbjct: 620 SLPTFLLGIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASV 679
Query: 661 GRSMVVANXXXXXXXXXXXXXXXXXXSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYS 720
R+M++AN + I WW WAYW SP++YA N +V NE
Sbjct: 680 CRTMMIANTGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPR 739
Query: 721 W--KKFTPNSYESIGVQVLKSRGFFAHAYWYWXXXXXXXXXXXXXXXXXTMAITFLNQLE 778
W K + NS +G VL + + WYW T+A+T+LN L
Sbjct: 740 WMNKMASSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLG 799
Query: 779 KPRAVITEESESNKQDNR--IRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKR 836
K ++ EE + + +R ++ + GE GR S + EA G K+
Sbjct: 800 KKAGLLPEEENEDADQGKDPMRRSLSTADGNRRGEVAMGRMSRDSA---AEASGGAGNKK 856
Query: 837 GMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGA 896
GM+LPF P +++FD+V Y VDMP EM+ QGV E +L LL G++GAFRPGVLTALMGVSGA
Sbjct: 857 GMVLPFTPLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGA 916
Query: 897 GKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYS 956
GKTTLMDVL+GRKTGGYI G++ ISG+PK QETFARISGYCEQ DIHSP VTV ESL++S
Sbjct: 917 GKTTLMDVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFS 976
Query: 957 AWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVAN 1016
A+LRLP EV + + MF+++VMELVEL L S+VGLPGV+GLSTEQRKRLTIAVELVAN
Sbjct: 977 AFLRLPKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVAN 1036
Query: 1017 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076
PSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQP IDIF+AFDEL LMKRGG
Sbjct: 1037 PSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGG 1096
Query: 1077 QEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRC 1136
Q IY GPLG++S +++ YFE+ PGV KI + YNPATWMLE ++ + E+ L VDF +++
Sbjct: 1097 QVIYAGPLGQNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQ 1156
Query: 1137 SELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRF 1196
S L++RNKAL++ELS P G+ DLYF TQ+SQ+ + QF +CLWKQ W+YWR+P Y VRF
Sbjct: 1157 SALHQRNKALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRF 1216
Query: 1197 FFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVF 1256
FT ++L+G++FW +G + DL +G+++ AIIF+G+ CS+VQP+V+VERTVF
Sbjct: 1217 IFTLATSLLIGTVFWQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVF 1276
Query: 1257 YREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYIT 1316
YRE+AAGMYS +P+A++Q E+PY+ +Q+V Y +IVYAM+G++W AEKF W+ F Y +
Sbjct: 1277 YRERAAGMYSAMPYAISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFS 1336
Query: 1317 LLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAW 1376
L +T+YGM+TV++TPN +A+I ++ FYGI+ LF GF IPRP+IP WW WYYW PVAW
Sbjct: 1337 FLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAW 1396
Query: 1377 TLYGLIASQFGDVEDQME--NGE---TVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFV 1431
T+YGLI SQ+GDVE +++ G TVK ++ D++GF+ DF+G VA VL F F F+
Sbjct: 1397 TVYGLIVSQYGDVETRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFI 1456
Query: 1432 FALGIKQLNFQRR 1444
FA I+ LNFQ R
Sbjct: 1457 FAFCIRTLNFQTR 1469
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4134 (1460.3 bits), Expect = 0., P = 0.
Identities = 774/1433 (54%), Positives = 1031/1433 (71%)
Query: 21 WRTSSVGAFSKS--LREE-DDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFEVDVSNLG 77
W S+ AFS+S ++E +DEE L+WAAL++LPTY+R+R+G+ GE E+ + NL
Sbjct: 2 WN-SAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLE 60
Query: 78 LQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAYLASKAL 137
+++ L+++LV E D E+F +++ R D V + PK+EVR+++L VE ++ S+AL
Sbjct: 61 ASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRAL 120
Query: 138 PSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPXXXXXXXXXX 197
P+ F + E + + ++ ++ LTIL +SG+I+P R+TLLLGPP
Sbjct: 121 PTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 198 XXXXXXXXXXVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVG 257
SG++TYNG+D+ E + RT+AY+SQ D H+ EMTVR+TL F+ RCQGVG
Sbjct: 181 LAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVG 240
Query: 258 SRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317
+Y++L ELARRE AGI PD D+D++MK++A G E +++ +Y +K+LGL+ CADT+VG
Sbjct: 241 FKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVG 300
Query: 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA 377
DEMI+GISGG++KR+TTGE++VGPA LFMDEIS GLDSSTT QI+ ++ H GT
Sbjct: 301 DEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTT 360
Query: 378 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVT 437
VISLLQP+PETY+LFDD+IL+S+GQI+YQGPR+ VL+FF S+GF CP RK VADFLQEVT
Sbjct: 361 VISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVT 420
Query: 438 SRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVY 497
S+KDQ+QYW+ +PYR+V +FAEAF+S+ G+K++ +L PFDK +H AAL+T Y
Sbjct: 421 SKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQY 480
Query: 498 GAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIY 557
G K ELLK + + LMK+N+F+Y+FK Q+ VAL MT+F RT MH +++ DG IY
Sbjct: 481 GVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIY 540
Query: 558 AGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVA 617
G+L+F+ +++FNG E+ M +AKLPV YK RD F+P WAY +PSW+L IP S +E A
Sbjct: 541 LGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESA 600
Query: 618 VWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANXXXXXXXXX 677
WV +TYY IG DP RF +Q+LL+ +++QM+ LFR++ + GR M+VAN
Sbjct: 601 TWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLV 660
Query: 678 XXXXXXXXXSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPN-SYESIGVQV 736
SR+ I WW W YW SP+ YAQNA NEFLG++W+K N + +S+G+ +
Sbjct: 661 VMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLAL 720
Query: 737 LKSRGFFAHAYWYWXXXXXXXXXXXXXXXXXTMAITFLNQLEKPRAVITEESESNKQDNR 796
LK R F+ YWYW T+ + LN K +AV++ E E ++++ +
Sbjct: 721 LKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSRE-ELDEREKK 779
Query: 797 IRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSV 856
+G + E E + ++S S G + K RGM+LPF+P SL+F + Y V
Sbjct: 780 RKGDEFVV---ELREYL--QHSGS-------IHGKYFKNRGMVLPFQPLSLSFSNINYYV 827
Query: 857 DMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITG 916
D+P +K QG+LED+L LL ++GAFRPGVLTAL+GVSGAGKTTLMDVL+GRKTGG I G
Sbjct: 828 DVPLGLKEQGILEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEG 887
Query: 917 NITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE 976
++ ISG+PK+QETFARISGYCEQND+HSP +TV ESLL+SA LRLP ++DSET++ F+ E
Sbjct: 888 DVYISGFPKRQETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHE 947
Query: 977 VMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
VMELVEL L +LVGLPGV GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAI
Sbjct: 948 VMELVELTSLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1007
Query: 1037 VMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFE 1096
VMRTVRN V+TGRT+VCTIHQP IDIF++FDEL MKRGG+ IY GPLG+ SC+LI YFE
Sbjct: 1008 VMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFE 1067
Query: 1097 AIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPG 1156
+I GV+KIK G+NPA WML+VTAS++E LGVDF +I+R S L +RNK LIE LSKP+
Sbjct: 1068 SIEGVQKIKPGHNPAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNI 1127
Query: 1157 SKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSK 1216
+K++ FPT+YSQS ++QF+ACLWKQ+ SYWRNPQYTAVRFF+T I+++LG++ W GSK
Sbjct: 1128 AKEIEFPTRYSQSLYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSK 1187
Query: 1217 TRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAM 1276
Q LFNAMGSM+ A++F+G+ ++ QPVVS+ER V YRE+AAGMYS LP+A AQ
Sbjct: 1188 RDTQQQLFNAMGSMYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYSALPFAFAQVF 1247
Query: 1277 IEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHI 1336
IE PY+ QS +Y I YAM ++W+A KF WY FFMY +++ FTFYGM+T AITPNH++
Sbjct: 1248 IEFPYVLAQSTIYSTIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTTAITPNHNV 1307
Query: 1337 AAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQMENG 1396
A+I++ FY +W LF GF+IP RIP+WWRWYYWANPVAWTLYGL+ SQ+GD E ++
Sbjct: 1308 ASIIAAPFYMLWNLFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDDERSVKLS 1367
Query: 1397 E-----TVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1444
+ VK L D G+KHDFLG+ A ++ F F VFA IK NFQRR
Sbjct: 1368 DGIHQVMVKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2586 (915.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 491/816 (60%), Positives = 609/816 (74%)
Query: 1 MEGSHDSYLASTSLRGNISRWRTSSVGA-FSKSLREEDDEEALKWAALEKLPTYNRLRKG 59
MEG+ + AS S+R N S W+ S FS+S REEDDEEAL+WAALEKLPT++RLRKG
Sbjct: 1 MEGT-SFHQASNSMRRNSSVWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKG 59
Query: 60 LLTTSR--GEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKV 117
+LT S G E+D+ LG Q ++L+ +L+KV + ++EK L KLK RIDRVGIDLP +
Sbjct: 60 ILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTI 119
Query: 118 EVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKP 177
EVR++HL VE E ++ +ALP+F F + + N L ++P+RKK TIL DVSGI+KP
Sbjct: 120 EVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKP 179
Query: 178 GRMTLLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGHDMGEFVPERTAAYISQHDNH 237
GRM LLLGPP +GRVTYNGH M EFVP+RTAAYI Q+D H
Sbjct: 180 GRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVH 239
Query: 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRET A++AR QGVGSRY++LTELARRE EA IKPDPDID++MKA++T G++ NV
Sbjct: 240 IGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNV 299
Query: 298 ITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGLEVCADTMVGD+M+RGISGG++KRVTTGEM+VGP+ ALFMDEISTGLDSS
Sbjct: 300 MTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSS 359
Query: 358 TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFE 417
TT+QIVN L+ +VHI +GTA+ISLLQPAPET++LFDDIIL+++G+I+Y+GPR+ V+EFFE
Sbjct: 360 TTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFE 419
Query: 418 SMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDE 477
+MGFKCP RKGVADFLQEVTS+KDQ QYW +++PYRF+ V EFAEAFQSFHVG++I DE
Sbjct: 420 TMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDE 479
Query: 478 LRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAF 537
L PFDK+KSH AALTT+ YG G +EL+KT SRE LLMKRNSFVY FK Q+ +A
Sbjct: 480 LALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLT 539
Query: 538 MTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPP 597
MTLF RT+M K + DG +Y GALFF M+MFNG++E+SMTIAKLPVFYKQRD F+P
Sbjct: 540 MTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPA 599
Query: 598 WAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLI 657
W Y++P W+LKIPISF+E A+ F+TYYVIG DPN GR FKQY+L + +NQMASALF+++
Sbjct: 600 WVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMV 659
Query: 658 AATGRSMVVANXXXXXXXXXXXXXXXXXXSREDIKKWWKWAYWCSPMSYAQNAIVANEFL 717
AA GR+M+VAN SR+DIKKWW W YW SP+ Y QNAI+ANEF
Sbjct: 660 AALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFF 719
Query: 718 GYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWXXXXXXXXXXXXXXXXXTMAITFLNQL 777
G+SW + NS E++GV LKSRGF HAYWYW T+A+TFLN L
Sbjct: 720 GHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSL 779
Query: 778 EKPRAVITEESESNK---QDNRIRGTVQLSARGESG 810
KP+AVI EE S++ Q R G V+ A + G
Sbjct: 780 GKPQAVIAEEPASDETELQSARSEGVVEAGANKKRG 815
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2210 (783.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 425/821 (51%), Positives = 569/821 (69%)
Query: 4 SHDSYL-ASTSLRGNISRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLL- 61
SH S + AS S R ++ +T V F +S R E+D+ L+WAA+E+LPT++RLRKG+L
Sbjct: 25 SHRSLVGASKSFR-DVFMPQTDEV--FGRSERREEDDMELRWAAIERLPTFDRLRKGMLP 81
Query: 62 -TTSRG--EAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVE 118
T++ G E ++D++ L + ++ L+ ++ E DNEKFL L+ R DRVGI++PK+E
Sbjct: 82 QTSANGKIELEDIDLTRLEPKDKKHLMEMILSFVEEDNEKFLRDLRERTDRVGIEVPKIE 141
Query: 119 VRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPG 178
VRYE+++VEG+ AS+ALP+ E I + +LPS++K + ILKD+SGI+KP
Sbjct: 142 VRYENISVEGDVRSASRALPTLFNVTLNTLESILGFFHLLPSKRKKIQILKDISGIVKPS 201
Query: 179 RMTLLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGHDMGEFVPERTAAYISQHDNHI 238
RMTLLLGPP +SGR+TY GH+ EFVP++T AYISQHD H
Sbjct: 202 RMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHF 261
Query: 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVI 298
GEMTVRE L FS RC GVGSRY+L++EL+RRE E GIKPDP ID +MK+IA GQE +++
Sbjct: 262 GEMTVREILDFSGRCLGVGSRYQLMSELSRREKEEGIKPDPKIDAFMKSIAISGQETSLV 321
Query: 299 TDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSST 358
TDY LK+LGL++CAD + GD M RGISGG++KR+TTGEM+VGPA ALFMDEISTGLDSST
Sbjct: 322 TDYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEMLVGPARALFMDEISTGLDSST 381
Query: 359 TFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFES 418
TFQI ++Q VHI+ T +ISLLQPAPET++LFDDIILLS+GQIVYQGPR+ VLEFFE
Sbjct: 382 TFQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEY 441
Query: 419 MGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDEL 478
GF+CP+RKGVADFLQEVTS+KDQ+QYW +E+PY +V+V +F+ F +FH GQK++ E
Sbjct: 442 FGFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEF 501
Query: 479 RTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFM 538
R P+DK+K+H AAL T+ YG EL K C RE LLMKRNSFVY+FK QI+ ++L M
Sbjct: 502 RVPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMKRNSFVYVFKTVQITIMSLITM 561
Query: 539 TLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPW 598
T++LRT+MH ++ DG + GA+FF+ VMFNGLAE++ T+ +LPVFYKQRDF F+PPW
Sbjct: 562 TVYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPW 621
Query: 599 AYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIA 658
A+A+P+W+LKIP+S +E +W+ LTYY IG P+A RFF+Q L + VNQMA +LFR +
Sbjct: 622 AFALPAWLLKIPLSLIESGIWIGLTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLG 681
Query: 659 ATGRSMVVANXXXXXXXXXXXXXXXXXXSREDIKKWWKWAYWCSPMSYAQNAIVANEFLG 718
A GR+ V++N +++DI+ W WAY+ SPM Y Q AIV NEFL
Sbjct: 682 AIGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLD 741
Query: 719 YSWKKFTPN-----SYESIGVQVLKSRGFFAHAYWYWXXXXXXXXXXXXXXXXXTMAITF 773
W +PN + +++G +LKSRGFF YW+W +A+ +
Sbjct: 742 ERWS--SPNYDTRINAKTVGEVLLKSRGFFTEPYWFWICIVALLGFSLLFNLFYILALMY 799
Query: 774 LNQLEKPRAVITEESESNKQDNRIRGT----VQLSARGESG 810
LN L +A + EE + +KQ RGT V+L++ G
Sbjct: 800 LNPLGNSKATVVEEGK-DKQKGENRGTEGSVVELNSSSNKG 839
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2132 (755.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 415/773 (53%), Positives = 529/773 (68%)
Query: 30 SKSLREEDDEEALKWAALEKLPTYNRLRKGLLTT-SRGEAF-------EVDVSNLGLQQR 81
+KS+ E DEEALKWA++EKLPTYNRLR L+ + + VDV+ L ++R
Sbjct: 41 TKSVNE--DEEALKWASIEKLPTYNRLRTSLMPELGEDDVYGNQILNKAVDVTKLDGEER 98
Query: 82 QRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAYLASKALPSFT 141
Q+ I+ + KV E DNE+ L KL++RIDRVGI LP VEVRY+HL V+ + Y ++LPS
Sbjct: 99 QKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTGDRSLPSLL 158
Query: 142 KFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPXXXXXXXXXXXXXX 201
+ E +GI ++K LTILKDVSGI+KP RMTLLLGPP
Sbjct: 159 NAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTTLLLALAGK 218
Query: 202 XXXXXXVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYE 261
VSG VTYNG+ + EFVP +T+AYISQ+D H+G MTV+ETL FSARCQGVG+RY+
Sbjct: 219 LDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARCQGVGTRYD 278
Query: 262 LLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321
LL ELARRE +AGI P+ D+D++MKA A +G ++++ITDY LK+LGL++C DT+VGD+M+
Sbjct: 279 LLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKDTIVGDDMM 338
Query: 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL 381
RGISGG++KRVTTGEM+VGP LFMDEISTGLDSSTTFQIV CL+Q VH+ T +ISL
Sbjct: 339 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEATVLISL 398
Query: 382 LQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKD 441
LQPAPET+DLFDDIILLS+GQIVYQGPR+ +LEFFES GFKCP+RKG ADFLQEVTS+KD
Sbjct: 399 LQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFLQEVTSKKD 458
Query: 442 QKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGK 501
Q+QYW +PYR++ V EFA +F+ FHVG K+S+EL P+DKSKSH+AAL + Y K
Sbjct: 459 QEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALMFDKYSIKK 518
Query: 502 RELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGAL 561
ELLK+C +E +LMKRNSF Y+FK QI +A TL+LRT+MH + D IY G+L
Sbjct: 519 TELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEIDANIYVGSL 578
Query: 562 FFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVF 621
FA + MFNGLAE++MTI +LPVFYKQRD F PPW Y +P+++L IPIS E W+
Sbjct: 579 LFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISIFESTAWMV 638
Query: 622 LTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANXXXXXXXXXXXXX 681
+TYY IG P+A RFFKQ+L+ + QMA+ +FR IA+T R+M +AN
Sbjct: 639 VTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVLVLLVVFLT 698
Query: 682 XXXXXSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSW-KKFTPNSYESIGVQVLKSR 740
R +I WW+WAYW SP+SYA NAI NE W K + NS +G VL
Sbjct: 699 GGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRWMNKMSGNSTTRLGTSVLNIW 758
Query: 741 GFFAHAYWYWXXXXXXXXXXXXXXXXXTMAITFLNQLEKPRAVIT-EESESNK 792
F WYW T+A+T+L+ L K +A++ EE E K
Sbjct: 759 DVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKEEDEEAK 811
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2094 (742.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 389/615 (63%), Positives = 488/615 (79%)
Query: 835 KRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVS 894
KRGM+LPF P +++FD V Y VDMP+EMK QGV +DKL LL ++G FRPGVLTALMGVS
Sbjct: 802 KRGMVLPFTPLTMSFDNVNYYVDMPKEMKEQGVSKDKLQLLKEVTGVFRPGVLTALMGVS 861
Query: 895 GAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLL 954
GAGKTTLMDVL+GRKTGGYI G+I ISG+PK+QETFARISGYCEQNDIHSP VTV ESL+
Sbjct: 862 GAGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETFARISGYCEQNDIHSPQVTVKESLI 921
Query: 955 YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV 1014
YSA+LRLP EV + F++EVMELVEL+ L ++VGLPG++GLSTEQRKRLTIAVELV
Sbjct: 922 YSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVVGLPGITGLSTEQRKRLTIAVELV 981
Query: 1015 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074
ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL L+KR
Sbjct: 982 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1041
Query: 1075 GGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIF 1134
GGQ IY GPLG++S ++I YF+AI GV KIK+ YNPATWMLEV++ + E L +DF + +
Sbjct: 1042 GGQVIYAGPLGQNSHKIIEYFQAIHGVPKIKEKYNPATWMLEVSSMAAEAKLEIDFAEHY 1101
Query: 1135 RCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAV 1194
+ S LY++NK L++ELS P G+ DLYF T++SQS QF +CLWKQ +YWR P Y
Sbjct: 1102 KTSSLYQQNKNLVKELSTPPQGASDLYFSTRFSQSLLGQFKSCLWKQWITYWRTPDYNLA 1161
Query: 1195 RFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERT 1254
RFFFT AV+LGS+FW +G+K + DL +G+M+ A++F+G+ SSVQP+++VER+
Sbjct: 1162 RFFFTLAAAVMLGSIFWKVGTKRENANDLTKVIGAMYAAVLFVGVNNSSSVQPLIAVERS 1221
Query: 1255 VFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMY 1314
VFYRE+AA MYS LP+ALAQ + EIPY+ +Q+ Y +I+YAMM ++WT KF W++F +
Sbjct: 1222 VFYRERAAEMYSALPYALAQVVCEIPYVLIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSF 1281
Query: 1315 ITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPV 1374
++ L FT+YGM+TVA+TPN +AA+ + FYG++ LF GFVIPRPRIP WW WYYW PV
Sbjct: 1282 MSFLYFTYYGMMTVALTPNQQVAAVFAGAFYGLFNLFSGFVIPRPRIPKWWIWYYWICPV 1341
Query: 1375 AWTLYGLIASQFGDVEDQ-----MENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFG 1429
AWT+YGLI SQ+GDVED M N T+K ++ +++G+ DF+ +A VL F F
Sbjct: 1342 AWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIENHYGYDADFMIPIATVLVGFTLFFA 1401
Query: 1430 FVFALGIKQLNFQRR 1444
F+FA GI+ LNFQ+R
Sbjct: 1402 FMFAFGIRTLNFQQR 1416
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1965 (696.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 375/629 (59%), Positives = 473/629 (75%)
Query: 819 SSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGL 878
+ ++ ++ +A +K+GMILPF+P ++TF V Y VDMP+EM+ QGV E +L LL+ +
Sbjct: 798 NEETALVADANQVISEKKGMILPFKPLTMTFHNVNYYVDMPKEMRSQGVPETRLQLLSNV 857
Query: 879 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCE 938
SG F PGVLTAL+G SGAGKTTLMDVL+GRKTGGY G+I ISG+PK+Q+TFARISGY E
Sbjct: 858 SGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYTEGDIRISGHPKEQQTFARISGYVE 917
Query: 939 QNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 998
QNDIHSP VTV ESL +SA LRLP E+ E +K F+E+VM LVEL L +LVGLPG +G
Sbjct: 918 QNDIHSPQVTVEESLWFSASLRLPKEITKEQKKEFVEQVMRLVELDTLRYALVGLPGTTG 977
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1058
LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP
Sbjct: 978 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1037
Query: 1059 GIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVT 1118
IDIF+AFDEL LMKRGGQ IY G LG HS L+ YF+ I GV I GYNPATWMLEVT
Sbjct: 1038 SIDIFEAFDELLLMKRGGQVIYGGKLGTHSQVLVDYFQGINGVPPISSGYNPATWMLEVT 1097
Query: 1119 ASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACL 1178
+ E ++F D+++ S+ +R +A I++LS P GS+ + F ++YSQ+ +QF+ CL
Sbjct: 1098 TPALEEKYNMEFADLYKKSDQFREVEANIKQLSVPPEGSEPISFTSRYSQNQLSQFLLCL 1157
Query: 1179 WKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLG 1238
WKQ+ YWR+P+Y VR FT A +LG++FWD+GSK SQDL MG++++A +FLG
Sbjct: 1158 WKQNLVYWRSPEYNLVRLVFTTIAAFILGTVFWDIGSKRTSSQDLITVMGALYSACLFLG 1217
Query: 1239 LQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMG 1298
+ SSVQP+VS+ERTVFYREKAAGMY+ +P+A AQ ++EIPYI Q+++Y VI Y +G
Sbjct: 1218 VSNASSVQPIVSIERTVFYREKAAGMYAPIPYAAAQGLVEIPYILTQTILYGVITYFTIG 1277
Query: 1299 YDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPR 1358
++ T KF Y FM++T FTFYGM+ V +TPN H+AA++S+ FY +W L GF++ +
Sbjct: 1278 FERTFSKFVLYLVFMFLTFTYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLLSGFLVQK 1337
Query: 1359 PRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQMENG---ETVKHFLRDYFGFKHDFLG 1415
P IPVWW W+Y+ PVAWTL G+I SQ GDVE + TVK F+ YFG+K + +G
Sbjct: 1338 PLIPVWWIWFYYICPVAWTLQGVILSQLGDVESMINEPLFHGTVKEFIEYYFGYKPNMIG 1397
Query: 1416 LVAGVLTCFVALFGFVFALGIKQLNFQRR 1444
+ A VL F ALF FAL +K LNFQRR
Sbjct: 1398 VSAAVLVGFCALFFSAFALSVKYLNFQRR 1426
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1849 (655.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 397/906 (43%), Positives = 546/906 (60%)
Query: 12 TSLRGNISRWRTSS-VGAFSKS--LREEDDEEALKWAALEKLPTYNRLRKGLLT------ 62
+S R + S +R+SS + + + D E AL+WA +E+LPT R+R LL
Sbjct: 26 SSFRRHTSSFRSSSSIYEVENDGDVNDHDAEYALQWAEIERLPTVKRMRSTLLDDGDESM 85
Query: 63 TSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYE 122
T +G VDV+ LG +R +I KL+K E DN K L K++ RIDRVG++LP +EVRYE
Sbjct: 86 TEKGRRV-VDVTKLGAVERHLMIEKLIKHIENDNLKLLKKIRRRIDRVGMELPTIEVRYE 144
Query: 123 HLNVEGEAYLAS-KALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMT 181
L V E + KALP+ V ++ G K + I+ DV+GIIKPGR+T
Sbjct: 145 SLKVVAECEVVEGKALPTLWNTAKRVLSELVKLTGAKTHEAK-INIINDVNGIIKPGRLT 203
Query: 182 LLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEM 241
LLLGPP SG ++YNGH + EFVP++T+AYISQ+D HI EM
Sbjct: 204 LLLGPPSCGKTTLLKALSGNLENNLKCSGEISYNGHRLDEFVPQKTSAYISQYDLHIAEM 263
Query: 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDY 301
TVRET+ FSARCQGVGSR +++ E+++RE E GI PD ++D YMKAI+ EG + ++ TDY
Sbjct: 264 TVRETVDFSARCQGVGSRTDIMMEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQTDY 323
Query: 302 YLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 361
LK+LGL++CA+ ++GD M RGISGG++KR+TT EM+VGP ALFMDEI+ GLDSST FQ
Sbjct: 324 ILKILGLDICAEILIGDVMRRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQ 383
Query: 362 IVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGF 421
IV L+Q HI+S T ++SLLQPAPE+YDLFDDI+L++ G+IVY GPR VL FFE GF
Sbjct: 384 IVKSLQQFAHISSATVLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGF 443
Query: 422 KCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTP 481
+CP+RKGVADFLQEV S+KDQ QYW H++ PY FV+VE ++ F+ +G+KI D L P
Sbjct: 444 RCPERKGVADFLQEVISKKDQAQYWWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKP 503
Query: 482 FDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLF 541
+D+SKSH+ AL+ VY EL CISRE LLMKRN FVYIFK Q+ A MT+F
Sbjct: 504 YDRSKSHKDALSFSVYSLPNWELFIACISREYLLMKRNYFVYIFKTAQLVMAAFITMTVF 563
Query: 542 LRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYA 601
+RT+M + G Y ALFFA +++ +G E+SMT +L VFYKQ+ F+P WAYA
Sbjct: 564 IRTRMGI-DIIHGNSYMSALFFALIILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYA 622
Query: 602 IPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATG 661
IP+ +LK+P+SF E VW L+YYVIG P A RFFKQ++L AV+ + ++FR +AA
Sbjct: 623 IPATVLKVPLSFFESLVWTCLSYYVIGYTPEASRFFKQFILLFAVHFTSISMFRCLAAIF 682
Query: 662 RSMVVANXXXXXXXXXXXXXXXXXXSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSW 721
+++V + + W KW +W +P+SY + + NEFL W
Sbjct: 683 QTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPRW 742
Query: 722 KKFTPNSYESIGVQVLKSRGFFAHAYWYWXXXXXXXXXXXXXXXXXTMAITFLNQLEKPR 781
+ PN++ ++G +L++RG + Y YW T+A+TFL R
Sbjct: 743 NQMQPNNF-TLGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTSSR 801
Query: 782 AVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSH--PKKRGMI 839
A+I+++ S Q GT + S ED S R ++ S + TE + P K +
Sbjct: 802 AMISQDKLSELQ-----GTEK------STEDSSVRKKTTDSPVKTEEEDKMVLPFKP-LT 849
Query: 840 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDK--------LVLLNGLSGAFRPGVLTALM 891
+ F+ + D V D + K +L D L L G+SGA + +L L
Sbjct: 850 VTFQDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLLDVLA 909
Query: 892 GVSGAG 897
G +G
Sbjct: 910 GRKTSG 915
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1837 (651.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 383/895 (42%), Positives = 546/895 (61%)
Query: 36 EDDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFE-----VDVSNLGLQQRQRLINKLVK 90
++ E AL+WA +++LPT+ RLR L+ GE E VDV+ LG +R +I KL+K
Sbjct: 19 DEAEHALQWAEIQRLPTFKRLRSSLVD-KYGEGTEKGKKVVDVTKLGAMERHLMIEKLIK 77
Query: 91 VTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAYLAS-KALPSFTKFYTTVFE 149
E DN K L K++ R++RVG++ P +EVRYEHL VE + KALP+ VF
Sbjct: 78 HIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKALPTLWNSLKHVFL 137
Query: 150 DIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPXXXXXXXXXXXXXXXXXXXXVS 209
D+ G+ + + ++ IL DVSGII PGR+TLLLGPP
Sbjct: 138 DLLKLSGVR-TNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKALSGNLENNLKCY 196
Query: 210 GRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARR 269
G ++YNGH + E VP++T+AYISQHD HI EMT RET+ FSARCQGVGSR +++ E+++R
Sbjct: 197 GEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSRTDIMMEVSKR 256
Query: 270 ENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGER 329
E + GI PDP+ID YMKAI+ +G + ++ TDY LK+LGL++CA+T+VG+ M RGISGG++
Sbjct: 257 EKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNAMKRGISGGQK 316
Query: 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETY 389
KR+TT EM+VGP ALFMDEI+ GLDSST FQI+ L+Q HI + T +SLLQPAPE+Y
Sbjct: 317 KRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFVSLLQPAPESY 376
Query: 390 DLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHK 449
DLFDDI+L+++G+IVY GPR+ VL+FFE GF+CP+RKGVADFLQEV S+KDQ QYW H+
Sbjct: 377 DLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISKKDQGQYWLHQ 436
Query: 450 EKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCI 509
P+ FV+V+ ++ F+ +G+KI + L P+D SK+H+ AL+ VY K EL + CI
Sbjct: 437 NLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSLPKWELFRACI 496
Query: 510 SRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVM 569
SRE LLMKRN FVY+FK Q+ A+ MT+F+RT+M + G Y LFFAT +++
Sbjct: 497 SREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDI-DIIHGNSYMSCLFFATVVLL 555
Query: 570 FNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGC 629
+G+ E+SMT+ +L VFYKQ+ F+P WAYAIP+ +LKIP+SF E VW LTYYVIG
Sbjct: 556 VDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWTCLTYYVIGY 615
Query: 630 DPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANXXXXXXXXXXXXXXXXXXSRE 689
P RFF+Q+++ AV+ + ++FR IAA ++ V A
Sbjct: 616 TPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITFVFAGFAIPYT 675
Query: 690 DIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWY 749
D+ W KW +W +P+SYA+ + NEFL W+K P + ++G +L+SRG Y Y
Sbjct: 676 DMPGWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQPTNV-TLGRTILESRGLNYDDYMY 734
Query: 750 WXXXXXXXXXXXXXXXXXTMAITFLNQLEKPRAVITEESESNKQ---DNRIRGTVQLSAR 806
W T+A++FL R +I+++ S Q D+ ++ L +
Sbjct: 735 WVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQGTKDSSVKKNKPLDSS 794
Query: 807 GESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQG 866
++ ED K L +T ++ + +P E ++E + + E + G
Sbjct: 795 IKTNEDPGKMILPFKPLTITFQDLNYY----VDVPVEMKGQGYNEK--KLQLLSE--ITG 846
Query: 867 VLEDK-LVLLNGLSGAFRPGVLTALMG--VSG--AGKTTLMDVLSGRKTGGYITG 916
L L G+SGA + +L L G SG G+ + L ++T ++G
Sbjct: 847 AFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQETFARVSG 901
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5887 | 0.9806 | 0.9691 | N/A | no |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.6865 | 0.9882 | 0.9794 | yes | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.6837 | 0.9826 | 0.9971 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6680 | 0.9847 | 0.9868 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.7033 | 0.9868 | 0.9937 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.6933 | 0.9764 | 0.9818 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.6858 | 0.9882 | 0.9794 | N/A | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5246 | 0.9778 | 0.9758 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.4 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | eugene3.00031524 | hypothetical protein (1432 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1444 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-97 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 8e-97 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-70 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 7e-69 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-55 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 1e-53 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-44 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-44 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 7e-44 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 5e-43 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 6e-40 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 9e-40 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-37 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-34 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-32 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-31 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-28 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-27 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-27 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 7e-26 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 8e-25 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-22 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 8e-22 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-21 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-20 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-20 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-20 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 5e-20 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-19 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-19 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 8e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-18 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-18 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-18 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-18 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-18 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-18 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-17 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-17 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 8e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-16 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-16 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-16 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-16 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-16 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-16 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-16 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 7e-16 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-15 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-15 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-15 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 4e-15 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-15 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 8e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 9e-15 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-14 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-14 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-14 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-14 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-14 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-14 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 5e-14 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-14 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 7e-14 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 7e-14 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-13 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-13 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-13 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-13 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-13 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-13 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-13 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-13 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-13 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-13 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-13 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-13 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-13 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 5e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 9e-13 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 9e-13 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-12 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-12 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-12 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-12 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-12 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-12 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-12 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-12 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-12 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-12 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 6e-12 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 7e-12 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 7e-12 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 7e-12 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 7e-12 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 8e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 8e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 8e-12 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 8e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 8e-12 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 8e-12 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 9e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-11 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-11 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-11 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-11 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-11 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-11 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-11 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-11 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-11 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-11 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-11 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-11 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-11 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-11 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 5e-11 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 6e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 6e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 6e-11 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 7e-11 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 8e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 8e-11 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 8e-11 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 8e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 8e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 9e-11 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 9e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-10 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-10 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-10 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-10 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-10 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-10 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-10 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-10 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-10 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-10 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 6e-10 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-10 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-10 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 7e-10 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 8e-10 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 8e-10 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 8e-10 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 9e-10 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-09 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-09 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-09 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-09 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-09 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-09 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-09 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-09 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-09 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-09 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-09 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-09 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 5e-09 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 6e-09 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 6e-09 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 7e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-09 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 9e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-08 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-08 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-08 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-08 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-08 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-08 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-08 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-08 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 4e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 6e-08 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 6e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 6e-08 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 6e-08 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 7e-08 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 7e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 7e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-08 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 7e-08 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 7e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 8e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 9e-08 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-07 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-07 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-07 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-07 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-07 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-07 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-07 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-07 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-07 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-07 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-07 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-07 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 5e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 5e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 5e-07 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-07 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-07 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 7e-07 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 8e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 8e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 8e-07 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-07 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 9e-07 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 9e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 9e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 9e-07 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-06 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-06 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-06 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-06 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-06 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-06 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-06 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-06 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-06 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 4e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-06 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-06 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 5e-06 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 5e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-06 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 5e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-06 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 6e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 6e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 6e-06 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 6e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 7e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 8e-06 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 8e-06 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 9e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 9e-06 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-05 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-05 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-05 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-05 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-05 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-05 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-05 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 2e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-05 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-05 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-05 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-05 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 5e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-05 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 6e-05 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 6e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 6e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 6e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 7e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 7e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 7e-05 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 8e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 8e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 8e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 8e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 9e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 9e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-04 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-04 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-04 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-04 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-04 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-04 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-04 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-04 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-04 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 2e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 5e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-04 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 5e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-04 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 7e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 7e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 7e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 8e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 8e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 0.001 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 0.001 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 0.001 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 0.001 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 0.001 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 0.001 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 0.001 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.001 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 0.001 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 0.001 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.001 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.001 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 0.001 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 0.002 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 0.002 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 0.002 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.002 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.002 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.002 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 0.002 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.002 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.002 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.002 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.002 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.002 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 0.002 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.002 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 0.003 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 0.003 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.003 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 0.003 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 0.003 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.004 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.004 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 0.004 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.004 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.004 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.004 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 2072 bits (5369), Expect = 0.0
Identities = 871/1450 (60%), Positives = 1097/1450 (75%), Gaps = 30/1450 (2%)
Query: 16 GNISRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTT--------SRGE 67
G+ SR RTSSV ++DEEALKWAA+EKLPTY+RLR ++ + ++
Sbjct: 30 GSQSRRRTSSV---------DEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLL 80
Query: 68 AFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVE 127
EVDV+ L RQ+ I+ + KV E DNEKFL K ++RIDRVGI LP VEVR+EHL VE
Sbjct: 81 HKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVE 140
Query: 128 GEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPP 187
+ Y+ S+ALP+ + E LGI ++K LTILKD SGIIKP RMTLLLGPP
Sbjct: 141 ADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPP 200
Query: 188 ASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETL 247
+SGKTTLLLALAGKLD SLKVSG +TYNG+ + EFVP +T+AYISQ+D H+G MTV+ETL
Sbjct: 201 SSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETL 260
Query: 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307
FSARCQGVG+RY+LL+ELARRE +AGI P+ ++D++MKA A EG ++++ITDY LK+LG
Sbjct: 261 DFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILG 320
Query: 308 LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLK 367
L++C DT+VGDEMIRGISGG++KRVTTGEM+VGP LFMDEISTGLDSSTT+QIV CL+
Sbjct: 321 LDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQ 380
Query: 368 QHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRK 427
Q VH+ T ++SLLQPAPET+DLFDDIILLS+GQIVYQGPR+ +LEFFES GFKCP+RK
Sbjct: 381 QIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERK 440
Query: 428 GVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKS 487
G ADFLQEVTS+KDQ+QYW + KPYR+++V EFAE F+SFHVG ++ +EL PFDKS+S
Sbjct: 441 GTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQS 500
Query: 488 HRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMH 547
H+AAL Y K ELLK C +E LLMKRN+FVY+FK QI VA T+FLRT+MH
Sbjct: 501 HKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMH 560
Query: 548 KHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWIL 607
+ DG +Y GAL F+ + MFNG AE+++ I +LPVFYKQRD F PPW + +P+++L
Sbjct: 561 TRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLL 620
Query: 608 KIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVA 667
IPIS +E VWV +TYY IG P A RFFKQ LL + QMA+ +FRLIA+ R+M++A
Sbjct: 621 GIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIA 680
Query: 668 NTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSW-KKFTP 726
NT G LL++F LGGF+L + +I WW+WAYW SP+SY NA+ NE W K
Sbjct: 681 NTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMAS 740
Query: 727 NSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITE 786
++ +G VL F WYW+G+GAL GF +LFN+ FT+A+T+LN L K +A+I+E
Sbjct: 741 DNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISE 800
Query: 787 ES--ESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILT-----EAQGSHPKKRGMI 839
E+ E +++ I ++ + + E R S+ + L EA KRGM+
Sbjct: 801 ETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMV 860
Query: 840 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT 899
LPF P +++FD+V Y VDMP EMK QGV ED+L LL ++GAFRPGVLTALMGVSGAGKT
Sbjct: 861 LPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKT 920
Query: 900 TLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWL 959
TLMDVL+GRKTGGYI G+I ISG+PKKQETFARISGYCEQNDIHSP VTV ESL+YSA+L
Sbjct: 921 TLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFL 980
Query: 960 RLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1019
RLP EV E + MF++EVMELVEL L ++VGLPGV+GLSTEQRKRLTIAVELVANPSI
Sbjct: 981 RLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSI 1040
Query: 1020 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1079
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL LMKRGGQ I
Sbjct: 1041 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1100
Query: 1080 YVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSEL 1139
Y GPLGR+S ++I YFEAIPGV KIK+ YNPATWMLEV++ + EV LG+DF + ++ S L
Sbjct: 1101 YSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSL 1160
Query: 1140 YRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFT 1199
Y+RNKAL++ELS P PG+ DLYF TQYSQS + QF +CLWKQ W+YWR+P Y VRFFFT
Sbjct: 1161 YQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFT 1220
Query: 1200 AFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYRE 1259
A+++G++FW +G+K + DL +G+M+ A++F+G+ CS+VQP+V+VERTVFYRE
Sbjct: 1221 LAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRE 1280
Query: 1260 KAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLL 1319
+AAGMYS LP+A+AQ + EIPY+ +Q+ Y +IVYAM+ ++WTA KF W++F + + L
Sbjct: 1281 RAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLY 1340
Query: 1320 FTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLY 1379
FT+YGM+TV++TPN +AAI + FYG++ LF GF IPRP+IP WW WYYW PVAWT+Y
Sbjct: 1341 FTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVY 1400
Query: 1380 GLIASQFGDVEDQ-----MENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFAL 1434
GLI SQ+GDVED T+K +++D++G+ DF+G VA VL F F F+FA
Sbjct: 1401 GLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAF 1460
Query: 1435 GIKQLNFQRR 1444
I+ LNFQ R
Sbjct: 1461 CIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1174 bits (3038), Expect = 0.0
Identities = 416/1458 (28%), Positives = 671/1458 (46%), Gaps = 176/1458 (12%)
Query: 93 EVDNEKFLLKLKSRIDRVGIDLP--KVEVRYEHLNVEGEAYLASKALPSFT----KFYTT 146
E + + ++ + ID I K+ V Y++L+ G A S P+F K T
Sbjct: 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVA-ADSDYQPTFPNALLKILTR 60
Query: 147 VFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F + K ILK + G+IKPG +T++LG P SG +TLL +A D
Sbjct: 61 GFRKLKK-----FRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFH 115
Query: 207 K-VSGRVTYNGHDMGEFVPERTA--AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL 263
V G +TY+G E Y ++ D H +TV ETL F+ARC+ +R + +
Sbjct: 116 IGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGV 175
Query: 264 TELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323
+ ++ I D Y+ GL +T VG++ +RG
Sbjct: 176 SREEYAKH--------------------------IADVYMATYGLSHTRNTKVGNDFVRG 209
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383
+SGGERKRV+ E +G A D + GLDS+T + + LK +I T ++++ Q
Sbjct: 210 VSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQ 269
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQK 443
+ + Y+LFD +I+L +G +Y GP + ++FE MGFKCP R+ ADFL +TS ++
Sbjct: 270 CSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ER 328
Query: 444 QYWTHKEKP-YRFVTVEEFAEAFQSFHVGQKISDELRTPFDK---------------SKS 487
Q EK R T +EF +++ ++ E+ D+ +K
Sbjct: 329 QIKPGYEKKVPR--TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQ 386
Query: 488 HRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMH 547
+ + Y +K C++R L MK N +F + +AL ++F
Sbjct: 387 SKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK- 445
Query: 548 KHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWIL 607
+ +D GALFFA F+ L EI+ P+ K R + + P A AI S I
Sbjct: 446 --NTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIIS 503
Query: 608 KIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVA 667
+IP +E V+ + Y+++ AGRFF L+ S LFR I A +++ A
Sbjct: 504 EIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEA 563
Query: 668 NTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSW--KKFT 725
T LL L GF + R + W KW Y+ +P++YA +++ NEF G + ++
Sbjct: 564 MTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYV 623
Query: 726 PNS--YESIGV--QVLKSRG------------FFAHAY-----WYWLGLGALFGFILLFN 764
P+ Y+++GV +V G + ++ W G + GF + F
Sbjct: 624 PSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFF 683
Query: 765 LGFTMAITFLNQLE-KPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSL 823
+ + F + K ++ + G S+S
Sbjct: 684 FVYILLTEFNKGAKQKGEILVFRRGSLKRAKKA------------------GETSASNKN 725
Query: 824 ILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKL-----------QGVLEDKL 872
+ + G +L + D+V DM +E + ++K
Sbjct: 726 DI---------EAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKR 776
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR 932
V+LN + G +PG LTALMG SGAGKTTL++VL+ R T G ITG + +F R
Sbjct: 777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 992
GY +Q D+H P TV ESL +SA+LR P V + ++EEV++L+E++ ++VG
Sbjct: 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVG 896
Query: 993 LPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
+PG GL+ EQRKRLTI VELVA P ++F+DEPTSGLD++ A + + +R D G+ +
Sbjct: 897 VPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAI 955
Query: 1052 VCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPA 1111
+CTIHQP +F+ FD L L+++GGQ +Y G LG +S +I+YFE G K + NPA
Sbjct: 956 LCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPA 1014
Query: 1112 TWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPT---QYSQ 1168
WMLEV ++ D+++++R S Y+ K ++ L ++D P +Y+
Sbjct: 1015 EWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAA 1074
Query: 1169 SAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMG 1228
S + QF LW+ YWR P Y +FF T F A+ +G F+ +G Q L N M
Sbjct: 1075 SLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVG---TSLQGLQNQMF 1131
Query: 1229 SMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVV 1288
++F A + + P V+ RE+ + +S L + AQ +EIPY V +
Sbjct: 1132 AVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTI 1191
Query: 1289 YCVIVYAMMGYDWTA-------EKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVS 1341
+ I Y +G+ W A E+ ++ + L F+ G + ++ PN AA+++
Sbjct: 1192 FFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLA 1251
Query: 1342 TLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQME------- 1394
+L + + FCG + P R+P +W + Y +P + + L+++ DV +
Sbjct: 1252 SLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTF 1311
Query: 1395 ---NGETVKHFLRDY---------------------FGFKHDFLGLVAGVLTCFVALFG- 1429
+G+T +++ Y + + +DFL ++ + FG
Sbjct: 1312 NPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGI 1371
Query: 1430 ---FVFALGIKQLNFQRR 1444
F+F I + F
Sbjct: 1372 FIAFIFFNIIATVFFYWL 1389
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 309 bits (793), Expect = 4e-97
Identities = 109/239 (45%), Positives = 140/239 (58%), Gaps = 47/239 (19%)
Query: 844 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMD 903
LT+ + Y+V + K LLN +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 904 VLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 963
VL+GRKT G ITG I I+G P + F R +GY EQ D+HSP +TV E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 964 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082
EPTSGLD++AA ++R ++ D+G+ ++CTIHQP IF+ FD L L+KRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 324 bits (833), Expect = 8e-97
Identities = 162/536 (30%), Positives = 267/536 (49%), Gaps = 36/536 (6%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-ITGNITISGYPKKQETFAR 932
LL +SG +PG L A+MG SGAGKTTLM+ L+ R G +G++ ++G P +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 992
IS Y +Q+D+ P +TV E L++ A LR+P V + ++ ++EV++ + L+ + +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 993 LPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 1052 VCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPA 1111
+CTIHQP ++F+ FD++ LM G+ Y+G + S + YNPA
Sbjct: 220 ICTIHQPSSELFELFDKIILMA-EGRVAYLGS-PDQAVPFFSDLGH-----PCPENYNPA 272
Query: 1112 TWMLEV-------TASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPG---SKDLY 1161
+ ++V S+E + D F S++ R S G +
Sbjct: 273 DFYVQVLAVIPGSENESRERIEKI--CDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENM 330
Query: 1162 FPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQ 1221
Y+ S +TQF A L + S R+P VR T A+L+G ++ G + Q
Sbjct: 331 EGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQ 390
Query: 1222 DLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPY 1281
N G++F + + Q V V + E VF RE +G+Y + LA+ + E+P
Sbjct: 391 ---NINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPL 447
Query: 1282 IFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLF---TFYGMLTVAITPNHHIAA 1338
+ ++ I Y M+G + + F+++ L+ T +G L + +A
Sbjct: 448 FIILPALFTSITYWMIGLRSG---ATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMAL 504
Query: 1339 IVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLY---GLIASQFGDVED 1391
V F + LF GF I IPV+++W + ++W Y GL+ +Q+ DV++
Sbjct: 505 TVGPPFVIPFLLFGGFFINSDSIPVYFKWLSY---LSWFRYGNEGLLINQWSDVDN 557
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 232 bits (595), Expect = 4e-70
Identities = 92/237 (38%), Positives = 138/237 (58%), Gaps = 45/237 (18%)
Query: 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVL 905
+L+F + +V + LL +SG +PG LTA+MG SGAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 906 SGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEV 965
+GR+TG ++G + I+G P + +F +I GY Q+DI P +TV E+L+++A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 966 DSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 1026 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082
TSGLD+ +A VM +R DTGRT++C+IHQP +IF+ FD+L L+ + G+ IY G
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 244 bits (624), Expect = 7e-69
Identities = 161/644 (25%), Positives = 280/644 (43%), Gaps = 70/644 (10%)
Query: 146 TVFEDIFNYLGILPSRKKH-LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS 204
++ + + L R++ +LK+VSG+ KPG + ++G +GKTTL+ ALA +
Sbjct: 18 GSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPK 77
Query: 205 SLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLT 264
+K SG V NG + +AY+ Q D I +TVRE L F A +
Sbjct: 78 GVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAH-------LRMPR 130
Query: 265 ELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE-MIRG 323
+ ++E + V+ LGL CA+T +G ++G
Sbjct: 131 RVTKKEKRERVD-------------------EVLQA-----LGLRKCANTRIGVPGRVKG 166
Query: 324 ISGGERKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL 382
+SGGERKR+ E++ P L LF DE ++GLDS + +V LK + T + ++
Sbjct: 167 LSGGERKRLAFASELLTDPPL-LFCDEPTSGLDSFMAYSVVQVLK-GLAQKGKTIICTIH 224
Query: 383 QPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQ 442
QP+ E ++LFD IIL+++G++ Y G + + FF +G CP+ ADF +V +
Sbjct: 225 QPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPG 284
Query: 443 KQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKR 502
+ + +E+ ++F +G+ + K+ L +
Sbjct: 285 SE-----NESRE--RIEKICDSFAVSDIGRDMLVNTNLWSGKAGG----LVKDSENMEGI 333
Query: 503 ELLKTCISRELLLMKRNSFVYIFK--------LTQISSVALAFMTLFLRTKMHKHSLTDG 554
+ ++ L+KR S++ + + L Q A+ ++L LT
Sbjct: 334 GYNASWWTQFYALLKR-SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQG-----LTQK 387
Query: 555 GIYA--GALF-FATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPI 611
G+ GALF F T M N I++ A+LPVF ++ + AY + I ++P+
Sbjct: 388 GVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPL 447
Query: 612 SFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFG 671
+ A++ +TY++IG A F L V +A++ LI+ S +A T G
Sbjct: 448 FIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVG 507
Query: 672 TFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYE- 730
++ GGF ++ + I ++KW + S Y ++ N++ + T +
Sbjct: 508 PPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTG 567
Query: 731 ---SIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAI 771
S G +L++ F +L L L I F L A+
Sbjct: 568 PCPSSGEVILETLSFRNAD--LYLDLIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 192 bits (491), Expect = 1e-55
Identities = 83/210 (39%), Positives = 124/210 (59%), Gaps = 6/210 (2%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIT-GNITISGYPKKQETFAR 932
+LN +S G + A++G SG+GKTTL+D +SGR GG T G I +G P+K + F +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 992
Y Q+DI P +TV E+L Y+A LRLP + RK +E V L+ L + +G
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK----RVEDVLLRDLALTRIG 137
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R V+
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVI 197
Query: 1053 CTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082
TIHQP D+F FD + L+ G +Y G
Sbjct: 198 LTIHQPRSDLFRLFDRILLLSSGEI-VYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 1e-53
Identities = 59/216 (27%), Positives = 108/216 (50%), Gaps = 7/216 (3%)
Query: 1172 TQFMACLWKQHWSYWRNPQYT-AVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSM 1230
TQ A L ++ WR+P R +A++ G++F ++ + S N G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDT----SLGGLNRPGLL 56
Query: 1231 FTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYC 1290
F +I+F + + PV ER V RE A+ +YS + LA+ ++E+P +Q++++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 1291 VIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYL 1350
+IVY M+G + +F + + +T L + G+ A+ P+ A+ + L L
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 1351 FCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQF 1386
GF IP +P W +W Y+ NP+ + + L A++F
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 1e-44
Identities = 128/493 (25%), Positives = 232/493 (47%), Gaps = 57/493 (11%)
Query: 844 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLV-----------------LLNGLSGAFRPGV 886
P +L F +V Y V + MK +G +++ +LNG++G PG
Sbjct: 37 PITLKFMDVCYRVKF-ENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 887 LTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 946
+ A++G SG+GK+TL++ L+GR G TG I + ++ R G+ Q+DI P
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPH 154
Query: 947 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 1006
+TV E+L++ + LRLP + + + + E V+ + L +++G + G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAF 1066
++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V ++HQP ++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 1067 DELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVT-------- 1118
D + ++ G+ ++ G ++YFE++ NPA ++L++
Sbjct: 275 DSVLVLSE-GRCLFFGKGS----DAMAYFESVGFSPSFP--MNPADFLLDLANGVCQTDG 327
Query: 1119 -------------ASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQ 1165
+S L S + N + S S D
Sbjct: 328 VSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSD----RI 383
Query: 1166 YSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFN 1225
+ F QF + L ++ ++ + +R F A+L G ++W S R QD
Sbjct: 384 SISTWFNQF-SILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWH--SDFRDVQD--- 437
Query: 1226 AMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQ 1285
+G +F IF G+ + V ER +F +E+A+GMY+ + +A+ + ++P +
Sbjct: 438 RLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELIL 497
Query: 1286 SVVYCVIVYAMMG 1298
++ + Y M G
Sbjct: 498 PTIFLTVTYWMAG 510
|
Length = 659 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 2e-44
Identities = 64/216 (29%), Positives = 104/216 (48%), Gaps = 8/216 (3%)
Query: 503 ELLKTCISRELLLMKRNSFV-YIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGAL 561
LK + RE L R+ + +++L Q +AL F T+F + G G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLD----TSLGGLNRPGLL 56
Query: 562 FFATAMVMFNGLAEISMT-IAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWV 620
FF+ F+ L IS I + V ++ + P AY + ++++PIS L+ +++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 621 FLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFA 680
+ Y+++G + RFF L+ L AS L IAA S A+ G LL L
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 681 LGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEF 716
L GF + + + W +W Y+ +P++YA A+ ANEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 7e-44
Identities = 69/245 (28%), Positives = 113/245 (46%), Gaps = 19/245 (7%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP--KKQ 927
L+G+S PG + L+G +GAGKTTL+ +L+G +G I + GY K+
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEP 73
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 987
R GY Q P +TV E+L + A L + ++E R IEE++EL L+
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKA 130
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 1046
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R +
Sbjct: 131 NKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185
Query: 1047 TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKD 1106
G T++ + H + + D + ++ G I G +L F +E +
Sbjct: 186 GGVTILLSTHILE-EAEELCDRVIILNDGKI-IAEGTPE----ELKEKFGGKGVIELEPE 239
Query: 1107 GYNPA 1111
A
Sbjct: 240 RLELA 244
|
Length = 293 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 5e-43
Identities = 76/246 (30%), Positives = 126/246 (51%), Gaps = 38/246 (15%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
K+ IL DVS ++ G++ +LG SGKTTLL A++G+++ SG++ +NG
Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
++ AY+ Q D + +TVRETL ++A + R++ I+ D
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILRL------------PRKSSDAIRKKRVED 125
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG-EMMVGP 341
V ++ A T +G +++GISGGER+RV+ +++ P
Sbjct: 126 VLLRD-----------------------LALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
+ L +DE ++GLDS T +V+ L Q N ++++ QP + + LFD I+LLS G
Sbjct: 163 KV-LILDEPTSGLDSFTALNLVSTLSQLARRNR-IVILTIHQPRSDLFRLFDRILLLSSG 220
Query: 402 QIVYQG 407
+IVY G
Sbjct: 221 EIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 6e-40
Identities = 140/529 (26%), Positives = 245/529 (46%), Gaps = 54/529 (10%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
TIL V+G+ PG + +LGP SGK+TLL ALAG++ + +G + N + + +
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILK 140
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
RT +++Q D +TVRETL F S L L ++E
Sbjct: 141 RTG-FVTQDDILYPHLTVRETLVFC-------SLLRLPKSLTKQE--------------- 177
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG-EMMVGPALA 344
K + E +VI++ LGL C +T++G+ IRGISGGERKRV+ EM++ P+L
Sbjct: 178 KILVAE----SVISE-----LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL- 227
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE ++GLD++ +++V L T V S+ QP+ Y +FD +++LS+G+ +
Sbjct: 228 LILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286
Query: 405 YQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEA 464
+ G + +FES+GF ADFL ++ + Q + +EKP + +
Sbjct: 287 FFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPN---VKQSLVAS 343
Query: 465 FQSFHVGQ-KISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKR---NS 520
+ + + K + E+ + + +T+ + + R + T ++ +L++R
Sbjct: 344 YNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKER 403
Query: 521 FVYIFKLTQISSVALAFMTLFLRTKMHKHS-LTDGGIYAGALFFATAMVMFNGLAEISMT 579
F ++ V A + L M HS D G LFF + +F G+ +
Sbjct: 404 KHESFNTLRVFQVIAAALLAGL---MWWHSDFRDVQDRLGLLFF---ISIFWGVFPSFNS 457
Query: 580 IAKLP----VFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGR 635
+ P +F K+R + +Y + + +P+ + +++ +TY++ G P G
Sbjct: 458 VFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGA 517
Query: 636 FFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGF 684
F L+ L ++ L + A A+T T +L GGF
Sbjct: 518 FLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGF 566
|
Length = 659 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 9e-40
Identities = 40/91 (43%), Positives = 58/91 (63%)
Query: 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGT 376
G+E +RGISGGERKRV+ E +V A L D + GLDSST +I+ C++ + T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+SL Q + E YDLFD +++L +G+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 2e-37
Identities = 78/296 (26%), Positives = 133/296 (44%), Gaps = 51/296 (17%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221
T L VS ++PG + LLGP +GKTTLL LAG L + SG + G+D+ +
Sbjct: 15 GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVK 71
Query: 222 FVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ R Y+ Q + E+TVRE L F AR G+
Sbjct: 72 EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---------------------- 109
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
+EA + L++ GLE ++ +R +SGG ++R++ ++
Sbjct: 110 ------------KEEAEERIEELLELFGLE-----DKANKKVRTLSGGMKQRLSIALALL 152
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS--LLQPAPETYDLFDDIIL 397
L +DE ++GLD + +I L++ T ++S +L+ E +L D +I+
Sbjct: 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRVII 209
Query: 398 LSDGQIVYQGPRELVLEFFESMGFKC--PKRKGVADFLQEVTSRKDQKQYWTHKEK 451
L+DG+I+ +G E + E F G P+R +A+ L+ + K +++ E
Sbjct: 210 LNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELAEILEA 265
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 4e-34
Identities = 43/101 (42%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 157 ILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216
+ + ILKD SG++KPG M L+LG P SG +TLL ALA + + ++ V G + YNG
Sbjct: 12 TTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG 71
Query: 217 HDMGEF--VPERTAAYISQHDNHIGEMTVRETLAFSARCQG 255
EF Y+S+ D H +TVRETL F+ RC+G
Sbjct: 72 IPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-32
Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 38/219 (17%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY--ITGNITISGYPKK 926
K+ +L SG +PG + ++G G+G +TL+ L+ R T G + G+I +G P K
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYK 75
Query: 927 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 984
+ E + Y + D+H P +TV E+L ++ +
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------ 111
Query: 985 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
G V G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R
Sbjct: 112 -------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 1045 VD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082
D T +++Q +I+D FD++ ++ G++IY G
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 3e-31
Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA- 931
++ LS G + L+G +GAGKTT + +L+G R T +G I+GY + + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 932 -RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
+ GYC Q D +TV E L + A L+ P+ K +E ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKR 130
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 1051 VVCTIH 1056
++ T H
Sbjct: 185 IILTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-28
Identities = 40/95 (42%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221
K +LK+VSG KPG +T ++GP +GK+TLL ALAG+ + L VSG V NG + +
Sbjct: 19 KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRPLDK 77
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
+ Y+ Q D +TVRETL F+A+ +G+
Sbjct: 78 RSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 4e-27
Identities = 69/208 (33%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP--KKQ 927
K L+G+S PG+ L+G +GAGKTTLM +L+ G I I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLKQP 67
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 987
+ R GY Q P TV E L Y AWL+ + S+ K ++EV+ELV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
+ +G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 1048 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
R V+ + H D+ +++ ++ +G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 6e-27
Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 31/214 (14%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET---F 930
L+ +S + G ++G +G+GK+TL+ +L+G G +G + + G + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 931 ARISGYCEQNDIHSP---FV--TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 985
R G QN P F TV E + + PE + E R +EE +ELV L+
Sbjct: 74 RRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLEG 126
Query: 986 L----IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
L +L G G Q++R+ IA L +P I+ +DEPT+GLD ++ +
Sbjct: 127 LRDRSPFTLSG-----G----QKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELL 177
Query: 1042 RNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
+ G+T++ H + + D + +++ G
Sbjct: 178 KKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 7e-26
Identities = 35/64 (54%), Positives = 47/64 (73%)
Query: 721 WKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKP 780
W K S E++G VLKSRG F AYWYW+G+GAL GF +LFN+ FT+A+T+LN L K
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 781 RAVI 784
+A++
Sbjct: 61 QAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 8e-25
Identities = 62/215 (28%), Positives = 99/215 (46%), Gaps = 27/215 (12%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQET 929
+L+ LS + G +T ++G +G+GK+TL+ L+G + G + I+ K+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE-- 73
Query: 930 FARISGYCEQNDIHSPFVTVYESLL-----YSAWLRLPPEVDSETRKMFIEEVMELVELK 984
A+ Y Q+ +TVYE +L + P + D E +EE +EL+ L+
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE----IVEEALELLGLE 129
Query: 985 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1043
L V LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 130 HLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDL 184
Query: 1044 TVDTGRTVVCTIHQPGIDIFDAF---DELFLMKRG 1075
+ G TVV +H + A D L L+K G
Sbjct: 185 NREKGLTVVMVLHDLNL----AARYADHLILLKDG 215
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 2e-23
Identities = 58/211 (27%), Positives = 102/211 (48%), Gaps = 27/211 (12%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
L +S +PG A++G +GAGK+TL+ + G + T +G+I + G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 933 ISGYCEQN---DIHSPFVTVYESLL-----YSAWLRLPPEVDSETRKMFIEEVMELVELK 984
I GY Q D P ++V + +L + R + D ++E +E V L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAK----VDEALERVGLS 123
Query: 985 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
L +G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R
Sbjct: 124 ELADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178
Query: 1045 VDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
G T++ H G+ + + FD + L+ R
Sbjct: 179 RREGMTILVVTHDLGL-VLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 2e-22
Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 32/219 (14%)
Query: 871 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ 927
K+ L G+S + G A++G SG+GK+TL+++L G R T G + IS +K+
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 928 ETFAR---ISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 982
R I G+ Q+ + P +T E++ LP + +K E EL+E
Sbjct: 76 LAAFRRRHI-GFVFQS--FNLLPDLTALENVE------LPLLLAGVPKKERRERAEELLE 126
Query: 983 LKPLIQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
VGL S LS Q++R+ IA L +P II DEPT LD+ V
Sbjct: 127 R-------VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 1038 MRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
M +R + G T+V H P ++ + D + ++ G
Sbjct: 180 MELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 94.4 bits (236), Expect = 4e-22
Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 53/205 (25%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYP--KKQETF 930
L+ +S G + L+G +GAGKTTL+ ++ G + G I + G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 931 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
R GY + +TV E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 1051 VVCTIHQPGIDIFDAFDELFLMKRG 1075
++ + H + D + ++ G
Sbjct: 148 ILLSSHIL-EEAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 8e-22
Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 25/212 (11%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 933
+L +S + G +TAL+G +GAGK+TL+ + G +G I I G P ++
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLR 76
Query: 934 SGYCEQNDIHSPF-----VTVYE---SLLYSA--WLRLPPEVDSETRKMFIEEVMELVEL 983
GY Q S +TV + Y W R + D E ++E +E V +
Sbjct: 77 IGYVPQ---KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK----VDEALERVGM 129
Query: 984 KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
+ L +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 130 EDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE 184
Query: 1044 TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
G+TV+ H G+ + FD + + R
Sbjct: 185 LRQEGKTVLMVTHDLGL-VMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 94.0 bits (235), Expect = 8e-22
Identities = 50/214 (23%), Positives = 82/214 (38%), Gaps = 55/214 (25%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKK 926
+L+ LS + G + ++G +GAGK+TL+ L+G + + G I ++ K
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 927 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 986
+ AR Y Q +EL+ L L
Sbjct: 70 E--LARKIAYVPQ-------------------------------------ALELLGLAHL 90
Query: 987 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
+ LS +R+R+ +A L P I+ +DEPTS LD ++ +R
Sbjct: 91 ADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145
Query: 1047 -TGRTVVCTIHQPGIDIFDAF---DELFLMKRGG 1076
G+TVV +H + A D + L+K G
Sbjct: 146 ERGKTVVMVLHDLNL----AARYADRVILLKDGR 175
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 1e-21
Identities = 76/256 (29%), Positives = 111/256 (43%), Gaps = 52/256 (20%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL D+S I G +T +LGP SGK+TLL LAG L SG V +G D+ P+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPK 72
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+ AY+ Q + +TV E + G P
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLL------------------------GRYP----- 103
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
++ +E I + L++LGLE AD V + +SGGER+RV ++ A
Sbjct: 104 -HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRV-----LIARA 152
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397
LA L +DE ++ LD + +++ L+ G V+ +L D +IL
Sbjct: 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR-EKGLTVVMVLHDLNLAARYADHLIL 211
Query: 398 LSDGQIVYQGPRELVL 413
L DG+IV QG E VL
Sbjct: 212 LKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 2e-21
Identities = 36/87 (41%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS 380
+RG+SGGERKRV+ +V LF+DE ++GLDSS+ Q+++ L++ T + S
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGR-TIICS 167
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQG 407
+ QP+ E ++LFD ++LLS G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 2e-21
Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 35/215 (16%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 931
+L+ LS G + AL G +GAGKTTL +L+G +++ G +I ++G P K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERR 70
Query: 932 RISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK---PLI 987
+ GY Q+ D +V E LL L+ + + + + ++L LK PL
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLG--LKELDAGNEQAET--VLKDLDLYALKERHPLS 126
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
LS Q++RL IA L++ ++ DEPTSGLD + V +R
Sbjct: 127 -----------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175
Query: 1048 GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082
G+ V+ H D FL K + + +
Sbjct: 176 GKAVIVITH----------DYEFLAKVCDRVLLLA 200
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 1e-20
Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 23/213 (10%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKK 926
+ L+ LS PG AL+G SG GKTTL+ +++G R G I ++G P +
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE 70
Query: 927 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 986
+ R G Q+ P +TV E++ + LR P+ + R + E++ELV L+ L
Sbjct: 71 R----RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR---VRELLELVGLEGL 123
Query: 987 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-V 1045
+ LS Q++R+ +A L PS++ +DEP S LDA+ + ++
Sbjct: 124 LNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178
Query: 1046 DTGRTVVCTIHQPGIDIFDAF---DELFLMKRG 1075
+ G T + H D +A D + +M G
Sbjct: 179 ELGITTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 3e-20
Identities = 67/261 (25%), Positives = 108/261 (41%), Gaps = 62/261 (23%)
Query: 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG 220
+K + D+S + G + LLG +GKTT L L G+L + SG NG+ +
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSI- 66
Query: 221 EFVPERTAA-----YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGI 275
+R AA Y Q D E+TVRE L F AR +G+
Sbjct: 67 --RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS---------------- 108
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG 335
E + L+VLGL A+ +SGG +++++
Sbjct: 109 ------------------EIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLA 145
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI----SLLQPAPETYDL 391
++G L +DE ++GLD ++ I + + + G ++I S+ E L
Sbjct: 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDLIL---EVRKGRSIILTTHSMD----EAEAL 198
Query: 392 FDDIILLSDGQIVYQG-PREL 411
D I ++SDG++ G P+EL
Sbjct: 199 CDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 3e-20
Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 29/218 (13%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK--- 925
D L+ L+ + G LTAL+G SGAGK+TL+++L G G I ++G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDL 388
Query: 926 KQETFARISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 982
E + + + QN P++ T+ E++L L P D E I ++
Sbjct: 389 SPEAWRKQISWVSQN----PYLFAGTIRENIL----LARPDASDEE-----IIAALDQAG 435
Query: 983 LKPLIQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
L + GL V +GLS Q +RL +A L++ S++ +DEPT+ LDA I+
Sbjct: 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495
Query: 1038 MRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
++ ++ +TV+ H+ D DA D + ++ G
Sbjct: 496 LQALQELAK-QKTVLVITHRL-EDAADA-DRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 5e-20
Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 53/208 (25%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
LN +S G + AL+G SG+GK+TL+ ++G G I ++ +
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 991
R G Q+ P +TV E++
Sbjct: 76 RRIGMVFQDFALFPHLTVLENIAL------------------------------------ 99
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 1050
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G T
Sbjct: 100 ------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGIT 153
Query: 1051 VVCTIHQPGIDIFDAF---DELFLMKRG 1075
VV H D+ +A D + +++ G
Sbjct: 154 VVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 1e-19
Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 5/110 (4%)
Query: 148 FEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLK 207
++++ NY +P + +L ++SG +KPG +T L+G +GKTTLL LAG+ + +
Sbjct: 6 WKNL-NY--TVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV- 61
Query: 208 VSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVG 257
++G + NG + + R+ Y+ Q D H +TVRE L FSA +G+
Sbjct: 62 ITGEILINGRPLDKNFQ-RSTGYVEQQDVHSPNLTVREALRFSALLRGLS 110
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 2e-19
Identities = 62/247 (25%), Positives = 100/247 (40%), Gaps = 62/247 (25%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE- 225
L D+S IK G L++GP SGK+TLL L G L SG V +G D+ + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL---GPTSGEVLVDGKDLTKLSLKE 72
Query: 226 --RTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
R + Q+ D+ TV E +AF G+
Sbjct: 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-------------------------- 106
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV-GP 341
+E + L+++GLE D +SGG+++RV ++ P
Sbjct: 107 --------PEEEIEERVEEALELVGLEGLR-----DRSPFTLSGGQKQRVAIAGVLAMDP 153
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI------SLLQPAPETYDLFDDI 395
+ L +DE + GLD + +++ LK+ + G +I LL +L D +
Sbjct: 154 DI-LLLDEPTAGLDPAGRRELLELLKK-LK-AEGKTIIIVTHDLDLL------LELADRV 204
Query: 396 ILLSDGQ 402
I+L DG+
Sbjct: 205 IVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 2e-19
Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 19/222 (8%)
Query: 863 KLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNIT 919
K+ G+ +K+ L ++ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 920 ISGYPKKQ--ETFARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIE 975
++ +K+ + + G+ QN + P +TV E++ + + RK E
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAG---KSAGRRKRAAE 123
Query: 976 EVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
E++E++ L+ + S LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 124 ELLEVLGLEDRLLKKK----PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 1036 IVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076
V+ +R + G+T++ H P ++ D + +K G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 8e-19
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1055
V LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+
Sbjct: 78 VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 1056 HQPGIDIFDAFDELFLMKRG 1075
H P A D + ++K G
Sbjct: 138 HDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-18
Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 16/191 (8%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYP--K 925
++G++ R G + +G +GAGKTT + +L+ R T G ++GY +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVR 59
Query: 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 985
+ R G Q +T E+L L P+ ++E R EE++EL EL
Sbjct: 60 EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEER---AEELLELFELGE 116
Query: 986 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
VG S R+RL IA L+ P ++F+DEPT+GLD R + +R
Sbjct: 117 AADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK 171
Query: 1046 DTGRTVVCTIH 1056
+ G T++ T H
Sbjct: 172 EEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 2e-18
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 18/189 (9%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
L GL+ A G + AL+G +GAGK+TL+ L+G R G + + Y +K R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 933 IS-GYCEQN---DIHSPFVTVYESLLYSAW-LRLPPEVDSETRKMFIEEVMELVELKPLI 987
G Q+ + + V + + + L L + E R + E + V L
Sbjct: 68 QRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEA-EVERR---VREALTAVGASGLR 121
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
+ LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 122 ERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176
Query: 1048 GRTVVCTIH 1056
G TVV + H
Sbjct: 177 GMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-18
Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 12/186 (6%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFA- 931
++G+S +PG +T L+G +GAGKTT + +L+G G T+ G+ +E
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDGFDVVKEPAEA 76
Query: 932 -RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
R G+ + +T E+L Y A L + + +EE+ + + ++ L+
Sbjct: 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR 133
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +R G+
Sbjct: 134 VG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKC 188
Query: 1051 VVCTIH 1056
++ + H
Sbjct: 189 ILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 85.6 bits (213), Expect = 2e-18
Identities = 59/201 (29%), Positives = 91/201 (45%), Gaps = 36/201 (17%)
Query: 872 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ- 927
LV L+ +S + RPG + L+G +GAGKTTL +++SG R T G + I+G P +
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 928 ------ETFARISGYCEQNDIHSPF--VTVYESLL--------YSAWLRLPPEVDSETRK 971
TF Q F +TV E+++ L + E R+
Sbjct: 73 ARLGIGRTF--------QIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARE 122
Query: 972 MFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
EE++E V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 123 R-AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNP 176
Query: 1032 RAAAIVMRTVRNTVDTGRTVV 1052
+ +R + G TV+
Sbjct: 177 EETEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 4e-18
Identities = 70/269 (26%), Positives = 108/269 (40%), Gaps = 51/269 (18%)
Query: 824 ILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFR 883
IL K + LP + F+ V + D +L LS
Sbjct: 449 ILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYG-----------PDDPPVLEDLSLEIP 497
Query: 884 PGVLTALMGVSGAGKTTLMDVLSGRKTGGY--ITGNITISGYPKKQ---ETFARISGYCE 938
PG A++G SG+GK+TL+ +L G Y G I + G + R GY
Sbjct: 498 PGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLASLRRQVGYVL 553
Query: 939 QNDIHSPFVTVYESLLYSAWLR-----LPPEVDSETRKMFIEEVMELVELKPLIQSL--- 990
Q+ L+S +R PE E I E +L I++L
Sbjct: 554 QDP-----------FLFSGSIRENIALGNPEATDEE----IIEAAQLAGAHEFIENLPMG 598
Query: 991 ----VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
VG G + LS QR+RL +A L++ P I+ +DE TS LD AI+++ + +
Sbjct: 599 YDTPVGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL-QIL 656
Query: 1047 TGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
GRTV+ H+ + D + ++ +G
Sbjct: 657 QGRTVIIIAHRL--STIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 4e-18
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 33/205 (16%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNIT-ISGYPKKQETFA 931
L +S + PG AL+G SGAGK+TL+ L+G T G + + T I+ K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 932 RI-SGYCEQNDIHSPFVTVYESLL---------YSAWLRLPPEVDSETRKMFIEEVMELV 981
R G Q ++V E++L + + L P+ + + + +
Sbjct: 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE-------KQRALAAL 129
Query: 982 ELKPLIQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
E VGL LS Q++R+ IA L+ P +I DEP + LD ++
Sbjct: 130 ER-------VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQ 182
Query: 1037 VMRTVRN-TVDTGRTVVCTIHQPGI 1060
VM ++ + G TV+ ++HQ +
Sbjct: 183 VMDLLKRINREEGITVIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 5e-18
Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 20/223 (8%)
Query: 868 LEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927
+ L +S G L+G +G+GK+TL+ +L+G +G + + G
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSS 70
Query: 928 ET----FARISGYCEQNDIHSPFV-TVYESLLYSA-WLRLPPEVDSETRKMFIEEVMELV 981
E + G QN F TV + + + L LP E + E R + E +ELV
Sbjct: 71 EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPRE-EIEER---VAEALELV 126
Query: 982 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
L+ L+ LS Q++R+ IA L P I+ +DEPT+GLD + ++ +
Sbjct: 127 GLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELL 181
Query: 1042 RNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083
+ + G+T++ H + + D + ++ G+ + G
Sbjct: 182 KKLKEEGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 7e-18
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 32/200 (16%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGG--YITGNITISGYPKKQE 928
+L G+ R G + A++G SG+GK+TL+ ++ G R G I G +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY 73
Query: 929 TFARISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL 983
R G Q + + TV+E++ + LR E ++ EE+ E+V
Sbjct: 74 RLRRRMGMLFQSGALFDSL-----TVFENVAF--PLR-------EHTRLSEEEIREIVLE 119
Query: 984 KPLIQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
K L VGL G + LS +KR+ +A L +P ++ DEPT+GLD A+ ++
Sbjct: 120 K-L--EAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176
Query: 1039 RTVRNTVDT-GRTVVCTIHQ 1057
+R+ G T + H
Sbjct: 177 DLIRSLKKELGLTSIMVTHD 196
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 1e-17
Identities = 61/193 (31%), Positives = 93/193 (48%), Gaps = 22/193 (11%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP---KKQETFA 931
L+G+S PG A++G SG+GK+TL+ L+G + G +T+ G P Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDGVPVSSLDQDEVR 408
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 991
R C Q D H TV E+L + P+ E + +E V L +++L
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATDEE----LWAALERVGLADWLRALP 458
Query: 992 -GL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
GL G + LS +R+RL +A L+A+ I+ +DEPT LDA A ++ +
Sbjct: 459 DGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-A 517
Query: 1046 DTGRTVVCTIHQP 1058
+GRTVV H
Sbjct: 518 LSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 2e-17
Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 22/201 (10%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPK 925
+ L +S PG AL+G SGAGK+TL+++L G T G I + ++
Sbjct: 332 PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD- 390
Query: 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 985
+++ + Q+ PF+ ++ + L P D+E I E +E L
Sbjct: 391 -ADSWRDQIAWVPQH----PFL-FAGTIAENIRLARPDASDAE-----IREALERAGLDE 439
Query: 986 LIQSL-VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
+ +L GL G +GLS Q +RL +A + + ++ +DEPT+ LDA A V+
Sbjct: 440 FVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLE 499
Query: 1040 TVRNTVDTGRTVVCTIHQPGI 1060
+R + GRTV+ H+ +
Sbjct: 500 ALRA-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 3e-17
Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 55/254 (21%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
+ + LK VS I+ G ++GP SGK+TLL + G LD SG V +G D
Sbjct: 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLL-NILGGLDRP--TSGEVRVDGTD 67
Query: 219 MGEFVPERTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN 271
+ + + AA ++ Q N + ++T E + GV + E R
Sbjct: 68 ISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKK-----ERRERAE 122
Query: 272 EAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKR 331
E L+ +GL + E+ SGG+++R
Sbjct: 123 EL-----------------------------LERVGLGDRLNHYPS-EL----SGGQQQR 148
Query: 332 VTTGE-MMVGPALALFMDEISTG-LDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETY 389
V + P + + DE TG LDS T +++ L++ ++ +GT ++ ++ PE
Sbjct: 149 VAIARALANDPKI-ILADE-PTGNLDSETGKEVMELLRE-LNKEAGTTIV-VVTHDPELA 204
Query: 390 DLFDDIILLSDGQI 403
+ D II L DG+I
Sbjct: 205 EYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 3e-17
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
L+ +S + G + +G +GAGKTT M ++ G + G IT Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 992
I E + P +T E+L A L + I+EV+++V LK
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKD-----SA 120
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
V G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G TV+
Sbjct: 121 KKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 1053 CTIHQ 1057
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 3e-17
Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 37/229 (16%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT---GNITISGYPKKQET 929
L ++ PG A++G SGAGK+TL+ ++ + G I +IT K ++
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 930 FARISGYCEQNDIHSPFVTVYESLL---------YSAWLRLPPEVDSETRKMFIEEVMEL 980
RI G Q+ +TV E++L + + L E D E +
Sbjct: 78 RRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEED-------KERALSA 129
Query: 981 VELKPLIQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
+E VGL LS Q++R+ IA L P +I DEP + LD + +
Sbjct: 130 LER-------VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSK 182
Query: 1036 IVMRTVRN-TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083
VM ++ + G TV+ +HQ +D+ + + + + G+ ++ G
Sbjct: 183 QVMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 8e-17
Identities = 65/279 (23%), Positives = 110/279 (39%), Gaps = 54/279 (19%)
Query: 146 TVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205
E++ LKDVS I+ G LL+GP SGK+TLL L G L +
Sbjct: 4 IEAENLSFRY------PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT 57
Query: 206 ---LKVSGRVTYNGHDMGEFVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYE 261
+ V G T + + E + + Q+ D+ + TV + +AF
Sbjct: 58 SGEVLVDGLDTSSEKSLLELR--QKVGLVFQNPDDQLFGPTVEDEVAF------------ 103
Query: 262 LLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321
L L E ++ E L+++GLE D
Sbjct: 104 GLENLGLPREE------------IEERVAE----------ALELVGLEELLD-----RPP 136
Query: 322 RGISGGERKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS 380
+SGG+++RV G + +GP + L +DE + GLD +++ LK+ + G +I
Sbjct: 137 FNLSGGQKQRVAIAGVLAMGPEI-LLLDEPTAGLDPKGRRELLELLKK-LKEEGGKTIII 194
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESM 419
+ + D +++L DG+I+ G + E +
Sbjct: 195 VTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 1e-16
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 17/187 (9%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYP--KKQETF 930
+ G+S R G + L+G +GAGKTT + +L+ + T G T++G+ ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREV 71
Query: 931 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
R G Q+ +T +E+L A L V R+ I+E+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1049
V S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 V-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 1050 TVVCTIH 1056
T++ T H
Sbjct: 184 TILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-16
Identities = 61/237 (25%), Positives = 102/237 (43%), Gaps = 29/237 (12%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKK 926
++ +S + G L+G SG GKTTL+ +++G + + G I I+ P
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-- 73
Query: 927 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 986
R G Q+ P +TV E++ + L++ ++ K +EE +ELV L+
Sbjct: 74 --PEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGF 129
Query: 987 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1045
LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++
Sbjct: 130 ADRKP-----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184
Query: 1046 DTGRTVVCTIHQPGIDIFDAF---DELFLMKRG-------GQEIYVGPLGRHSCQLI 1092
+ G T V H D +A D + +M G +EIY P R I
Sbjct: 185 ELGITFVYVTH----DQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 2e-16
Identities = 55/201 (27%), Positives = 85/201 (42%), Gaps = 33/201 (16%)
Query: 872 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ- 927
L +N +S RPG + L+G +GAGKTTL ++++G + + G + I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 928 ------ETFARISGYCEQNDIHSPFVTVYESLL--------YSAWLRLPPEVDSETRKMF 973
TF Q P +TV E++ S L P E
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE 128
Query: 974 I-EEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
E++E V L L G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 129 RARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPE 183
Query: 1033 AAAIVMRTVRNTVDT-GRTVV 1052
+ +R D G T++
Sbjct: 184 ETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 3e-16
Identities = 74/242 (30%), Positives = 113/242 (46%), Gaps = 23/242 (9%)
Query: 825 LTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEM---KLQGVLE---DKLVLLNGL 878
LT A +R + P E E S+ L GV + DK V+ NGL
Sbjct: 2 LTRAVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKAVV-NGL 60
Query: 879 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP-KKQETFARIS-GY 936
S G L+G +GAGK+T+ ++ G + G IT+ G P + AR G
Sbjct: 61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARIGV 118
Query: 937 CEQNDIHSPFVTVYESLL-YSAWLRLPPEVDSETRKMFIEEVM-ELVELKPLIQSLVGLP 994
Q D TV E+LL + + + TR+ IE V+ L+E L +S
Sbjct: 119 VPQFDNLDLEFTVRENLLVFGRYFGM------STRE--IEAVIPSLLEFARL-ESKADAR 169
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1054
VS LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++ T
Sbjct: 170 -VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 228
Query: 1055 IH 1056
H
Sbjct: 229 TH 230
|
Length = 340 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 3e-16
Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 21/207 (10%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIT--GNITISGYPKKQE---T 929
L+ +S RPG AL+G +GAGK+TL +L T Y+ G I+++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 930 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 989
AR+ +Q + ++V ++L Y A L ++ R I E++ + L +
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGL-----A 123
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1048
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 124 ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 1049 RTVVCTIHQPGIDIFDAFDELFLMKRG 1075
+V+ H +D +A D L ++ RG
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHRG 208
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 4e-16
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 12/186 (6%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK--TGGYITGN-ITISGYPKKQETFA 931
L+G++ + G L+G SGAGK+TL+ ++ + T G I N +S + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 932 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
R G Q+ P VYE++ EV + + V +EL L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVA------FALEVTGVPPREIRKRVPAALELVGLSHKH 130
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
LP + LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 1051 VVCTIH 1056
VV H
Sbjct: 189 VVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 5e-16
Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 27/224 (12%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNIT-ISGYPKKQETFA 931
L ++ G + A++G SGAGK+TL+ L+G T G I N I+ K+
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 932 RIS-GYCEQNDIHSPFVTVYESLL-----YSAWLR----LPPEVDSETRKMFIEEVMELV 981
R G Q P ++V E++L Y++ R L + E + ++ + +
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK---EDKAQALDALERVG 136
Query: 982 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
L Q S LS Q++R+ IA LV P II DEP + LD +A VM +
Sbjct: 137 ILDKAYQR------ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDIL 190
Query: 1042 R--NTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083
+ N D G TV+ +HQ +D+ + + + + G+ ++ GP
Sbjct: 191 KDINQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 6e-16
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 20/180 (11%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI---TGNITISGYP-KKQETFAR--ISGY 936
G +T L+G +GAGKTTL+ ++ + +G +TI G + +F R I
Sbjct: 26 EEGEITGLLGENGAGKTTLLRMI-----ATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80
Query: 937 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 996
+ +++ +T E+L Y A L + + K I E+ + ++L + VG
Sbjct: 81 FGERGLYAR-LTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG---- 132
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V+ + H
Sbjct: 133 -EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSH 191
|
Length = 245 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 7e-16
Identities = 57/241 (23%), Positives = 101/241 (41%), Gaps = 37/241 (15%)
Query: 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDV 904
+ F V +S ++ L+ +S R G A++G G+GK+TL+ +
Sbjct: 1 GRIEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKL 49
Query: 905 LSG--RKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL 961
L+G + T G + I + I GY Q D+ + T+ +++ A
Sbjct: 50 LAGLYKPTSGSVLLDGTDIRQLDP-ADLRRNI-GYVPQ-DVTLFYGTLRDNITLGA---- 102
Query: 962 PPEVDSETRKMFIEEVMELVELKPLIQS-------LVGLPGVSGLSTEQRKRLTIAVELV 1014
P D E I EL + + +G G GLS QR+ + +A L+
Sbjct: 103 -PLADDER----ILRAAELAGVTDFVNKHPNGLDLQIGERG-RGLSGGQRQAVALARALL 156
Query: 1015 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074
+P I+ +DEPTS +D + + +R + +T++ H+P + D D + +M
Sbjct: 157 NDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLL--DLVDRIIVMDS 213
Query: 1075 G 1075
G
Sbjct: 214 G 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 7e-16
Identities = 67/254 (26%), Positives = 109/254 (42%), Gaps = 45/254 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+L VS ++PG + +LGP +GK+TLL AL+G+L SG VT NG + + PE
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
A H + +LAF Q V ++ R + +G +P+ D +
Sbjct: 72 ELA-------RHRAVLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREPEEDERIAA 117
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM------V 339
+A+A + GL R +SGGE++RV ++ V
Sbjct: 118 QALAATD------------LSGLA--------GRDYRTLSGGEQQRVQLARVLAQLWPPV 157
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399
LF+DE ++ LD + + +Q G AV+++L D I+LL
Sbjct: 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIVLLH 215
Query: 400 DGQIVYQGPRELVL 413
G+++ G + VL
Sbjct: 216 QGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 1e-15
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 26/215 (12%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETF 930
LL+G+S RPG + A++G +GAGK+TL+ LSG G +T + ++ +P ++
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE--L 73
Query: 931 ARISGYCEQNDIHS-PFVTVYESLLYSAWLRLPPEVDSETRK--MFIEEVMELVELKPLI 987
AR QN + PF TV E + R+P E + + + +L L
Sbjct: 74 ARHRAVLPQNSSLAFPF-TVQEVVQMG---RIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTV 1041
LS +++R+ +A L V + +F+DEPTS LD +R
Sbjct: 130 GRD-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 1042 RNTVDTGRTVVCTIHQPGIDIFDAF-DELFLMKRG 1075
R G V+ +H +++ + D + L+ +G
Sbjct: 185 RQLAREGGAVLAVLHD--LNLAAQYADRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 74/258 (28%), Positives = 110/258 (42%), Gaps = 55/258 (21%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
LKDVS I PG L+GP +GK+TLL L G ++ + SG V +G D+ +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71
Query: 225 -ERTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGI-KPD 278
R I Q N I ++V E + L L RR +
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENV--------------LSGRLGRRSTWRSLFGLF 117
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE-M 337
P + K A L+ +GL A D++ SGG+++RV +
Sbjct: 118 PKEE---KQRALA----------ALERVGLLDKAYQRA-DQL----SGGQQQRVAIARAL 159
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG-TAVISLLQPAPETYDL----F 392
M P L L DE LD +++ Q+++ LK+ ++ G T ++SL Q DL
Sbjct: 160 MQQPKLIL-ADEPVASLDPASSRQVMDLLKR-INREEGITVIVSLHQV-----DLAREYA 212
Query: 393 DDIILLSDGQIVYQGPRE 410
D I+ L DG+IV+ GP
Sbjct: 213 DRIVGLKDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 26/177 (14%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQ 927
L +S G +TAL+G SG GK+TL+ D++ G G + + G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD----EGEVLLDGKDIYD 71
Query: 928 ETFARIS-----GYCEQNDIHSPFV-TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV 981
+ G Q +PF ++Y+++ Y L E +EE +
Sbjct: 72 LDVDVLELRRRVGMVFQKP--NPFPGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKA 127
Query: 982 ELKPLI-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
L + L L GLS Q++RL +A L P ++ +DEPTS LD + A +
Sbjct: 128 ALWDEVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 75.5 bits (187), Expect = 2e-15
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 60/208 (28%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETF 930
+L +S +PG A++G SG+GK+TL+ +L T G I + + E+
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD--LESL 74
Query: 931 ARISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 987
+ Y Q+ PF+ T+ E++L
Sbjct: 75 RKNIAYVPQD----PFLFSGTIRENIL--------------------------------- 97
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
SG QR+R+ IA L+ +P I+ +DE TS LD A+++ +R +
Sbjct: 98 ---------SGG---QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA-LAK 144
Query: 1048 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
G+TV+ H+ D + ++ G
Sbjct: 145 GKTVIVIAHRL--STIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-15
Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 22/194 (11%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ---ETFARISGYCE 938
+T + G SGAGK+TL+ ++G + GG I N T+ +K+ R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 939 QNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 998
Q P + V E+L + L + + E ++ ++E+++L+ L L+ +
Sbjct: 82 QQYALFPHLNVRENLAFG----LKRKRNRE-DRISVDELLDLLGLDHLLNR-----YPAQ 131
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1058
LS +++R+ +A L A P ++ +DEP S LD ++ ++ ++ P
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK-------NLNIP 184
Query: 1059 GIDIFDAFDELFLM 1072
I + E +
Sbjct: 185 VIFVTHDLSEAEYL 198
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 3e-15
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 15/161 (9%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
L ++ G L+G SG GK+TL+ +++G T G I ++ P ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 991
R QN P +TVYE++ + LR P+ + + R ++EV +L+ L+ L+
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR---VKEVAKLLGLEHLLNRKP 131
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
LS QR+R+ +A LV P + +DEP S LDA+
Sbjct: 132 -----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
|
Length = 338 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 3e-15
Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 15/190 (7%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET 929
DKLV+ +GLS + G L+G +GAGKTT + +L G G+I++ G P
Sbjct: 19 DKLVV-DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRA 75
Query: 930 -FARIS-GYCEQNDIHSPFVTVYESLL-YSAWLRLPPEVDSETRKMFIEEVMELVELKPL 986
AR G Q D P TV E+LL + + L + R + + ++E +L+
Sbjct: 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSA---AAARAL-VPPLLEFAKLENK 131
Query: 987 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
+ VG LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ +
Sbjct: 132 ADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186
Query: 1047 TGRTVVCTIH 1056
G+T++ T H
Sbjct: 187 RGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 4e-15
Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 19/195 (9%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETF 930
VL +GLS G L G +G+GKTTL+ +++G G I + G
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG----TIKLDGGDIDDPDV 71
Query: 931 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
A Y + P +TV E+L + A E+D I +E V L PL
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELD-------IAAALEAVGLAPLA--- 121
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G
Sbjct: 122 -HLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI 179
Query: 1051 VVCTIHQPGIDIFDA 1065
V+ H P + + A
Sbjct: 180 VIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 5e-15
Identities = 64/265 (24%), Positives = 108/265 (40%), Gaps = 62/265 (23%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
ILK V+ +K G + ++GP SGK+TL +AG S SG + + G D+ E P+
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPDE 73
Query: 227 TAA---YIS-QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
A +++ Q+ I ++ E L + ARR + +D
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALN--------------ARRSARG----EEPLD 115
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR-----GISGGERKRVTTGEM 337
+ + L +LG++ +E + G SGGE+KR +M
Sbjct: 116 --LLDFLKLLKAK-------LALLGMD--------EEFLNRSVNEGFSGGEKKRNEILQM 158
Query: 338 MV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS-------LLQPAPETY 389
+ P LA+ +DEI +GLD + + + + +I+ ++P
Sbjct: 159 ALLEPKLAI-LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP----- 212
Query: 390 DLFDDIILLSDGQIVYQGPRELVLE 414
D + +L DG+IV G EL E
Sbjct: 213 ---DYVHVLLDGRIVKSGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 6e-15
Identities = 72/257 (28%), Positives = 102/257 (39%), Gaps = 62/257 (24%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
++DVS + G +T LLG +GKTTLL +A L SG+VT +G D T
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVD--------T 66
Query: 228 AAYISQHDNHIG----------EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
S IG +T RE L + AR L L+R+E +A I
Sbjct: 67 VRDPSFVRRKIGVLFGERGLYARLTARENLKYFAR----------LNGLSRKEIKARI-- 114
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM 337
A + K L L D VG S G +++V
Sbjct: 115 -----------------AELS-----KRLQLLEYLDRRVG-----EFSTGMKQKVAIARA 147
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397
+V L +DE ++GLD T + + +KQ N G AVI E L D +I+
Sbjct: 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK--NEGRAVIFSSHIMQEVEALCDRVIV 205
Query: 398 LSDGQIVYQGPRELVLE 414
L G++V +G E +
Sbjct: 206 LHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 74.8 bits (185), Expect = 8e-15
Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 40/230 (17%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
L +S + G AL+G SG GK+TL+ +++G R T G + + G P R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG----EVLVDGEPVTGPGPDR 75
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 992
GY Q D P++TV +++ L L +E R E EL+EL VG
Sbjct: 76 --GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEAR----ERAEELLEL-------VG 120
Query: 993 LPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 1046
L G LS R+R+ +A L +P ++ +DEP S LDA + + + +
Sbjct: 121 LSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 1047 TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFE 1096
TG+TV+ H DI DE + + V L ++++ E
Sbjct: 181 TGKTVLLVTH----DI----DEAVFL---ADRVVV--LSARPGRIVAEVE 217
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 74.8 bits (185), Expect = 9e-15
Identities = 62/264 (23%), Positives = 96/264 (36%), Gaps = 69/264 (26%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
IL VS + G + LLG +GKTTLL + G L SG + ++G D+ P
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPP 69
Query: 225 ERTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSR-------YELLTELA-RRENE 272
A Y+ + E+TV E L A + R YEL L RR+
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQL 129
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRV 332
AG T+ SGGE++ +
Sbjct: 130 AG---------------------------------------TL---------SGGEQQML 141
Query: 333 TTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHIN-SGTAVISLLQPAPETYD 390
+M P L L +DE S GL +I +++ + G ++ + Q A +
Sbjct: 142 AIARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIRE---LRDEGVTILLVEQNARFALE 197
Query: 391 LFDDIILLSDGQIVYQGPRELVLE 414
+ D +L G++V +G +L
Sbjct: 198 IADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETF 930
+++G+ PG LT L+G +G+GK+TL+ +L+G R G + + + G ++
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR-- 73
Query: 931 ARISGYCEQNDIHSPFVTVYESLLY------SAWLRLPPEVDSETRKMFIEEVMELVELK 984
AR EQ+ + +TV + + S W P + + + EL
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRA-----LARTELS 128
Query: 985 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
L +S LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 129 HLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183
Query: 1045 VDTGRTVVCTIH 1056
TG TVV +H
Sbjct: 184 AATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-14
Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 21/221 (9%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
L+ +S + G L AL+G SGAGK+TL+ +++G G I N + R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRL--PPEVDSETRKMFIEEVMELVELKPLIQSL 990
G+ Q+ P +TV +++ + +R P E + R +EE++ LV+L+ L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR---VEELLRLVQLEGLADRY 134
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1049
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G
Sbjct: 135 ---P--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 1050 TVVCTIHQPGIDIFDAFDELFLMKRGG-------QEIYVGP 1083
T V H + + D + ++ +G E+Y P
Sbjct: 190 TTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYDHP 229
|
Length = 345 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 32/214 (14%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
L ++ + +PG A++G +GAGKTTL+++L G I I I +K +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK--SLR 76
Query: 932 RISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 988
+ G Q F+ T+ E++ + E + I
Sbjct: 77 SMIGVVLQ----DTFLFSGTIMENIRLG---------RPNATDEEVIEAAKEAGAHDFIM 123
Query: 989 SL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
L +G LS +R+ L IA ++ +P I+ +DE TS +D ++ +
Sbjct: 124 KLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL 182
Query: 1042 RNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
+ GRT + H+ I +A D++ ++ G
Sbjct: 183 EKLMK-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 15/191 (7%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 927
+ L + LS G + G +GAGKTTL+ +L+G R G + +
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVR 70
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 987
E++ + Y +T E+L + W R ++ T I E + V L L
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGLAGLE 124
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
LP V LS Q++R+ +A ++ + +DEP + LD A++ +
Sbjct: 125 D----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ 179
Query: 1048 GRTVVCTIHQP 1058
G V+ T HQP
Sbjct: 180 GGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 66/268 (24%), Positives = 97/268 (36%), Gaps = 69/268 (25%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+LK V ++ G + ++GP SGK+TLL + G L SG V +G D+
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEA 70
Query: 226 ------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
R + Q +TV E +AF R S E + E+
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSE-EEIREIVL----------- 118
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
K L+ +GL D + +SGG +KRV
Sbjct: 119 -----EK----------------LEAVGLRGAEDLYPAE-----LSGGMKKRV------- 145
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYD 390
ALA L DE + GLD + I + L + + G I + +
Sbjct: 146 --ALARALALDPELLLYDEPTAGLDPIASGVIDD-LIRSLKKELGLTSIMVTHDLDTAFA 202
Query: 391 LFDDIILLSDGQIVYQGPRELVLEFFES 418
+ D I +L DG+IV +G E E S
Sbjct: 203 IADRIAVLYDGKIVAEGTPE---ELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 61/271 (22%), Positives = 100/271 (36%), Gaps = 76/271 (28%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
P+ + L DVS IK G L+G SGK+TL A+ G L SG + ++G D
Sbjct: 12 PTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG-LLK--PTSGSIIFDGKD 68
Query: 219 MGEFVPE------RTAAYISQHD-----NHIGEMTVRETLAFSARCQGVGSRYELLTELA 267
+ + + + Q D N MT+ E +A R G S+ E + A
Sbjct: 69 LLKLSRRLRKIRRKEIQMVFQ-DPMSSLNPR--MTIGEQIAEPLRIHGKLSKKEAR-KEA 124
Query: 268 RRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGG 327
G+ + V + +SGG
Sbjct: 125 VLLLLVGVGLPEE-----------------------------------VLNRYPHELSGG 149
Query: 328 ERKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI--- 379
+R+RV + ALA L DE ++ LD S QI++ LK+ + G ++
Sbjct: 150 QRQRV-----AIARALALNPKLLIADEPTSALDVSVQAQILDLLKK-LQEELGLTLLFIT 203
Query: 380 ---SLLQPAPETYDLFDDIILLSDGQIVYQG 407
++ + D + ++ G+IV +G
Sbjct: 204 HDLGVVA------KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 4e-14
Identities = 58/252 (23%), Positives = 105/252 (41%), Gaps = 45/252 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+L+D+S ++ G +T L+GP +GK+TLL A+ G L S SG + G + +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74
Query: 226 RTAAYISQHDNHIGE--MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
Y+ Q + +TV++ + G + L +++ E
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLL-----GRYGKKGWFRRLNKKDKE----------- 118
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
+ EA L+ +G+E D +G+ +SGG+++RV +
Sbjct: 119 -------KVDEA-------LERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPD 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL-LQPAPETYDLFDDIILLSDGQ 402
L +DE TG+D + +I + LK+ +++ L FD +I L +
Sbjct: 160 LLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVM---AYFDRVICL-NRH 215
Query: 403 IVYQGPRELVLE 414
++ GP E VL
Sbjct: 216 LIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 4e-14
Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 23/198 (11%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGG--YITGNITISGYPKKQE 928
V+L+ L+ G + A++G SG+GK+TL++++ + G Y+ G T KK
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 929 TFARIS-GYCEQNDIHSPFV-----TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 982
F R GY QN F TV E+L L+ E R+ +E +E V
Sbjct: 72 KFRREKLGYLFQN-----FALIENETVEENLDLG--LKYKKLSKKEKREK-KKEALEKVG 123
Query: 983 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
L ++ + LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 124 LNLKLKQKI-----YELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLL 178
Query: 1043 NTVDTGRTVVCTIHQPGI 1060
D G+T++ H P +
Sbjct: 179 ELNDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 5e-14
Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 25/197 (12%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYI---TGNITISGYPKKQ 927
V+L+G+ G + A++G SG+GK+TL+ ++ G R G I +I +
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELY 81
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 987
E R+ G Q +TV+E++ + LR E K+ + ELV +K
Sbjct: 82 EIRKRM-GVLFQQGALFSSLTVFENVAFP--LR-------EHTKLPESLIRELVLMK--- 128
Query: 988 QSLVGLPGV------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
LVGL G S LS RKR+ +A + +P ++F+DEPTSGLD +A ++ +
Sbjct: 129 LELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELI 188
Query: 1042 RNTVDT-GRTVVCTIHQ 1057
R D G TV+ H
Sbjct: 189 RELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 5e-14
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 16/188 (8%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK-KQETFA 931
V++N LS G L+G +GAGK+T+ +L G + G IT+ G P + A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLA 75
Query: 932 RIS-GYCEQNDIHSPFVTVYESLL-YSAWLRLPPEVDSETRKMFIEEVM-ELVELKPLIQ 988
R++ G Q D P TV E+LL + + + TR+ IE V+ L+E L +
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM------STRE--IEAVIPSLLEFARL-E 126
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
S + V+ LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G
Sbjct: 127 SKADVR-VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARG 185
Query: 1049 RTVVCTIH 1056
+T++ T H
Sbjct: 186 KTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 6e-14
Identities = 65/261 (24%), Positives = 101/261 (38%), Gaps = 70/261 (26%)
Query: 160 SRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM 219
+ + LKDV+ I+ G ++GP SGK+TLL L G LD SG V NG D+
Sbjct: 13 LGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLL-NLLGGLDK--PTSGEVLINGKDL 69
Query: 220 GEFVPERTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENE 272
+ + A ++ Q+ N + ++TV E + G + R E
Sbjct: 70 TKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG-----RRKRAAEE 124
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRV 332
L+VLGLE + +SGG+++RV
Sbjct: 125 L-----------------------------LEVLGLEDRLL----KKKPSELSGGQQQRV 151
Query: 333 TTGEMMVGPALA-----LFMDEISTG-LDSSTTFQIVNCLKQHVHINSGTAVI----SLL 382
+ AL + DE TG LDS T +++ L++ ++ G +I
Sbjct: 152 -----AIARALINNPKIILADEP-TGNLDSKTAKEVLELLRE-LNKERGKTIIMVTHD-- 202
Query: 383 QPAPETYDLFDDIILLSDGQI 403
PE D +I L DG+I
Sbjct: 203 ---PELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 7e-14
Identities = 72/272 (26%), Positives = 109/272 (40%), Gaps = 63/272 (23%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV-SGRVTYNGHDMGEFVP- 224
ILK V+ +K G + ++GP SGK+TL + G +V G + ++G D+ E P
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDGEDILELSPD 76
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFS--ARCQGVGSRYELLTELARRENEAGIKPDPDID 282
ER A I LAF GV + L + R GI P+ +
Sbjct: 77 ERARAGI--------------FLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKE 122
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR-----GISGGERKRVTTGEM 337
+ KA ++LGL+ +E + G SGGE+KR ++
Sbjct: 123 LKEKA----------------ELLGLD--------EEFLERYVNEGFSGGEKKRNEILQL 158
Query: 338 MV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396
++ P LA+ +DE +GLD + + G +I+ Q L D I
Sbjct: 159 LLLEPKLAI-LDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ------RLLDYIK 211
Query: 397 -----LLSDGQIVYQGPRELVLEFFESMGFKC 423
+L DG+IV G EL E E G+
Sbjct: 212 PDKVHVLYDGRIVKSGDPELA-EELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 7e-14
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 18/188 (9%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
+NG+S + + G + L+G +GAGKTT ++ G + G I I+ P + A
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR--A 73
Query: 932 RIS-GYCEQNDIHSPF--VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 988
R+ GY Q S F +TV E++L +R + + R+ +EE++E + L +
Sbjct: 74 RLGIGYLPQE--ASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRK 128
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
S S LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 129 SKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183
Query: 1049 RTVVCTIH 1056
V+ T H
Sbjct: 184 IGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 63/244 (25%), Positives = 99/244 (40%), Gaps = 46/244 (18%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
L D+S ++PG LLGP GKTTLL +AG SG + +G D+ PE
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPE 70
Query: 226 RTA-AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
R + Q +TV E +AF + +GV E+ R E
Sbjct: 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKA-----EIRARVREL----------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV-GPAL 343
L+++GLE + + +SGG+++RV + P+L
Sbjct: 115 ------------------LELVGLE-----GLLNRYPHELSGGQQQRVALARALAREPSL 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE + LD+ ++ LK + G I + E L D I ++++G+I
Sbjct: 152 -LLLDEPLSALDAKLREELREELK-ELQRELGITTIYVTHDQEEALALADRIAVMNEGRI 209
Query: 404 VYQG 407
V G
Sbjct: 210 VQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-13
Identities = 73/276 (26%), Positives = 115/276 (41%), Gaps = 66/276 (23%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
+LKDV+ I+ G +LLGP GK+TLL +AG + + SG + +G D+ + P
Sbjct: 17 EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPE 73
Query: 225 ERTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
+R A + Q H MTV E +AF + +GV E+ +R E
Sbjct: 74 KRGIAMVFQNYALYPH------MTVYENIAFGLKLRGVPKA-----EIDKRVKEV----- 117
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
K+LGLE + +SGG+R+RV +
Sbjct: 118 ------------------------AKLLGLEHLLNR-----KPLQLSGGQRQRVALARAL 148
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398
V +DE + LD+ + + +K+ +H GT I + E L D I+++
Sbjct: 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKK-LHERLGTTTIYVTHDQVEAMTLADRIVVM 207
Query: 399 SDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
+DG+I G P EL ++ P VA F+
Sbjct: 208 NDGRIQQVGTPLEL---------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 1e-13
Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 25/187 (13%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT---GNITISGYPKKQET 929
L G+S G + AL+G +GAGKTTL+ + G G I +IT
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT------GLPP 69
Query: 930 FARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKP 985
R GY + P +TV E+LL A+ R + + +E V EL LK
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFPRLKE 124
Query: 986 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
+ L G LS +++ L IA L++ P ++ +DEP+ GL + + +R
Sbjct: 125 RRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179
Query: 1046 DTGRTVV 1052
D G T++
Sbjct: 180 DEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-13
Identities = 68/285 (23%), Positives = 112/285 (39%), Gaps = 77/285 (27%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
L D+S IK G + LLGP +GK+TLL +AG +GR+ NG + +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFD------ 68
Query: 228 AAYISQHDNHIG----------EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
+ ++ D +G MTV + +AF + + R +EA I+
Sbjct: 69 VSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR------------KERPSEAEIRA 116
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLG-LEVCADTMVGDEMIRGISGGERKRVTTGE 336
+V L + + D +SGG+R+RV
Sbjct: 117 --------------------------RVEELLRLVQLEGLADRYPAQLSGGQRQRVA--- 147
Query: 337 MMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL 391
+ ALA L +DE LD+ ++ L++ +H G + + E +L
Sbjct: 148 --LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK-LHDRLGVTTVFVTHDQEEALEL 204
Query: 392 FDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
D +++L+ G+I GP + V + P + VA FL EV
Sbjct: 205 ADRVVVLNQGRIEQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 1e-13
Identities = 57/202 (28%), Positives = 87/202 (43%), Gaps = 38/202 (18%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIT---GNITISGYPKKQ--- 927
LL+ +S RPG + A++G +GAGK+TL+ LS G ++ G + ++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 928 ETFARISGYCEQNDIHS----PFVTVYE--SLLYSAWLRLPPEVDSETRKMFIEEVMELV 981
AR Q HS PF TV E ++ + E D+ + + V
Sbjct: 72 AELARRRAVLPQ---HSSLSFPF-TVEEVVAMGRAPHGLSRAEDDAL-----VAAALAQV 122
Query: 982 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAA 1035
+L L P +SG EQ +R+ +A L P + +DEPTS LD
Sbjct: 123 DLAHLAGRD--YPQLSG--GEQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH 177
Query: 1036 IVMRTVRN-TVDTGRTVVCTIH 1056
V+R R + G V+ +H
Sbjct: 178 HVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI- 379
+RG+S +RKR+T G + LF+DE ++GLDS + IV LK+ +SG A++
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLA--DSGQAILC 163
Query: 380 SLLQPAPETYDLFDDIILL-SDGQIVYQG 407
++ QP+ ++ FD ++LL G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 2e-13
Identities = 66/278 (23%), Positives = 101/278 (36%), Gaps = 94/278 (33%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+L DVS ++PG + +LGP +GK+TLL AL+G+L SG V NG + ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPA 72
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
A A + QH +L+F + V
Sbjct: 73 ELARRRAVLPQH----------SSLSFPFTVEEV-------------------------- 96
Query: 283 VYMKAI--ATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
V M E + + L + L + +SGGE++RV
Sbjct: 97 VAMGRAPHGLSRAEDDALVAAALAQVDL-----AHLAGRDYPQLSGGEQQRV-------- 143
Query: 341 PALA---------------LFMDEISTGLDSS---TTFQIV-NCLKQHVHINSGTAVISL 381
LA L +DE ++ LD + ++ + G AVI +
Sbjct: 144 -QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-----GLAVIVV 197
Query: 382 LQPAPETYDL------FDDIILLSDGQIVYQGPRELVL 413
L +DL D I+LL G++V G VL
Sbjct: 198 L------HDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 2e-13
Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 34/221 (15%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 927
+ +L ++ + G A++G SG GK+TL+ +++G + T G + + G P
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG----EVLLDGRPVTG 69
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 987
GY Q D P++TV +++ L E+ +++ E EL+EL
Sbjct: 70 PGPDI--GYVFQEDALLPWLTVLDNVA------LGLELRGKSKAEARERAKELLEL---- 117
Query: 988 QSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
VGL G LS R+R+ IA L P ++ +DEP LDA + +
Sbjct: 118 ---VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL 174
Query: 1043 NTV-DTGRTVVCTIHQPGIDIFDAF---DELFLMKRGGQEI 1079
+T +TV+ H D+ +A D + ++ I
Sbjct: 175 RLWEETRKTVLLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 24/212 (11%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI----TGNITISGYPKKQETF 930
L+ +S + G + L+G +GAGKTT + ++ G I +G + G P
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 931 ARISGYCEQNDIHSPFVTVYESLLYSAWLR-LPPEVDSETRKMFIEEVMELVELKPLIQS 989
RI GY + P + V + L+Y A L+ L E E R+ I+E +E +EL
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKE---EARRR-IDEWLERLELSEYANK 124
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+
Sbjct: 125 -----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179
Query: 1050 TVVCTIHQPGIDIFDAF-DELFLMKRGGQEIY 1080
TV+ + HQ +++ + D + L+ +G +Y
Sbjct: 180 TVILSTHQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 3e-13
Identities = 67/260 (25%), Positives = 100/260 (38%), Gaps = 70/260 (26%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD--- 218
KK + + VS +KPG +T LLGP +GKTT L LAG L+ +G T +G D
Sbjct: 15 KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVK 71
Query: 219 --------MGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRE 270
+G FV + T Y +T RE L + A G+
Sbjct: 72 EPAEARRRLG-FVSDSTGLY--------DRLTARENLEYFAGLYGL-------------- 108
Query: 271 NEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERK 330
+G E + LG+E D VG G S G R+
Sbjct: 109 --------------------KGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQ 143
Query: 331 RVTTGEMMVGPALALFMDEISTGLD---SSTTFQIVNCLKQHVHINSGTAVISLLQPAPE 387
+V +V L +DE +TGLD + + + L+ G ++ E
Sbjct: 144 KVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-----LGKCILFSTHIMQE 198
Query: 388 TYDLFDDIILLSDGQIVYQG 407
L D +++L G++VY+G
Sbjct: 199 VERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 3e-13
Identities = 68/261 (26%), Positives = 111/261 (42%), Gaps = 55/261 (21%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
L DV+ + G + LLGP SGK+TLL +AG L+ SGR+ NG D
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQ--PDSGRIRLNGQDATRVHAR 70
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+R ++ QH +TVR+ +AF R+ +A IK
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAFGLE--------------IRKHPKAKIK-------- 108
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
A V + L+++ LE +GD +SGG+R+RV +
Sbjct: 109 ----------ARV--EELLELVQLE-----GLGDRYPNQLSGGQRQRVALARALAVEPQV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQ-HVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE LD+ ++ + L++ H ++ T ++ Q E ++ D I+++S+G+I
Sbjct: 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ--EEAMEVADRIVVMSNGKI 209
Query: 404 --------VYQGP-RELVLEF 415
VY P V+ F
Sbjct: 210 EQIGSPDEVYDHPANPFVMSF 230
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 21/167 (12%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGG--YITGNITISGYPKKQETF 930
LN LS + PG L L+G +GAGKTTLMDV++G R G G+ ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 931 ARISGYCEQNDIHSPF--VTVYESLLY------SAWLRLPPEVDSETRKMFIEEVMELVE 982
AR G + + F +TV E+L S + L + +E R+ I+E++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR-IDELLATIG 136
Query: 983 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
L L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-13
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT--GNITISGYPKKQETF 930
L G+S G + +G +GAGKTT + +LSG + T G + G + + ++++
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP---WKRRKKFL 93
Query: 931 ARISGYCEQNDIHSPFVTVYESL-LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 989
RI Q + V +S L +A LPP + +E+ EL++L+ L+ +
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRL----DELSELLDLEELLDT 149
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1048
V LS QR R IA L+ P I+F+DEPT GLD A + ++ + G
Sbjct: 150 -----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG 204
Query: 1049 RTVVCTIH 1056
TV+ T H
Sbjct: 205 TTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 5e-13
Identities = 64/254 (25%), Positives = 106/254 (41%), Gaps = 60/254 (23%)
Query: 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG 220
KK L VS + PG M LLGP +GKTTL+ LA S SG + +G D+
Sbjct: 11 GKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVL 64
Query: 221 EFVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
+ + R Y+ Q TVRE L + A +G+ P
Sbjct: 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI--------------------PS 104
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
++ + D L+++ L + I +SGG R+RV + +
Sbjct: 105 KEVK---ARV-----------DEVLELVNL-----GDRAKKKIGSLSGGMRRRVGIAQAL 145
Query: 339 VG-PALALFMDEISTGLDSSTTFQIVNCLKQ----HVHINSGTAVISLLQPAPETYDLFD 393
VG P++ L +DE + GLD + N L + + I S T ++ ++ L +
Sbjct: 146 VGDPSI-LIVDEPTAGLDPEERIRFRNLLSELGEDRIVILS-THIVEDVE------SLCN 197
Query: 394 DIILLSDGQIVYQG 407
+ +L+ G++V++G
Sbjct: 198 QVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 5e-13
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT--GNITISGYPKKQETF 930
L+ +S + + G L+G SG+GK+TL + G + T G I G + + ++
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 931 ARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 988
+ Q+ + S P +T+ E + + E RK + ++ V L +
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS-KKEARKEAVLLLLVGVGLPEEVL 139
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
+ P LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 140 NR--YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 5e-13
Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 18/208 (8%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
L G++ + G +TA++G +GAGK+TL L+G + + G I + Y +K R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 933 IS-GYCEQNDIHSPF-VTVYESLLYSAW-LRLPPEVDSETRKMFIEEVMELVELKPLIQS 989
S G Q+ + F +VY+ + + A L+LP + E RK ++ ++ ++ L
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLP---EDEVRKR-VDNALKRTGIEHLKDK 137
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1048
LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G
Sbjct: 138 -----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG 192
Query: 1049 RTVVCTIHQPGIDIFDAF-DELFLMKRG 1075
T++ H IDI + D +F+MK G
Sbjct: 193 LTIIIATHD--IDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 8e-13
Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 11/170 (6%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
++ +S R G L+G SG+GK+TL +L+G + G I + +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 932 RISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 989
R Q+ S P +TV + L LR+ R+ + E++ELV L P
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPPEFLD 424
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
P LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 425 RY--PH--ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (180), Expect = 9e-13
Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 20/180 (11%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS------GY 936
RPG L+GV+GAGKTT +L+G T +G+ T++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 937 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 996
C Q D +T E L A LR P + IE+V ++ L SL
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEE-------IEKVANW-SIQSLGLSLYADRLA 2068
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2069 GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 9e-13
Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 34/203 (16%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI--TGNITISGYP--- 924
D V+L+ +S +PG + ++G SG+GK+TL ++ Y+ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLAL 68
Query: 925 KKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVME----- 979
R G Q E++L++ +R + M +E V+E
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLA 115
Query: 980 -----LVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
+ EL ++VG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 116 GAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 1035 AIVMRTVRNTVDTGRTVVCTIHQ 1057
+MR + + GRTV+ H+
Sbjct: 175 HAIMRNMHDICA-GRTVIIIAHR 196
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-12
Identities = 62/220 (28%), Positives = 101/220 (45%), Gaps = 25/220 (11%)
Query: 871 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ--- 927
K L G+S + + G A++G SG+GK+TL ++ G +G++ + G KQ
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDR 387
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 987
ETF + GY Q D+ TV E++ R D E I E +L + LI
Sbjct: 388 ETFGKHIGYLPQ-DVELFPGTVAENIA-----RFGENADPEK----IIEAAKLAGVHELI 437
Query: 988 QSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
L +G PG + LS QR+R+ +A L +P ++ +DEP S LD +
Sbjct: 438 LRLPDGYDTVIG-PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANA 496
Query: 1041 VRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1080
++ G TVV H+P + D++ +++ G +
Sbjct: 497 IKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-12
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 26/179 (14%)
Query: 863 KLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNIT 919
+ L+ +S G + ++G SGAGK+TL+ +++ R T G +
Sbjct: 10 TFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQD 69
Query: 920 ISGYPKKQ-ETFARISGYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE 976
++ + + + G Q N + S TV+E++ + P E+ + +
Sbjct: 70 LTALSEAELRQLRQKIGMIFQHFNLLSSR--TVFENVAF------PLELAGVPKAEIKQR 121
Query: 977 VMELVELKPLIQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
V EL+EL VGL + LS Q++R+ IA L NP I+ DE TS LD
Sbjct: 122 VAELLEL-------VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALD 173
|
Length = 339 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 1e-12
Identities = 68/247 (27%), Positives = 103/247 (41%), Gaps = 40/247 (16%)
Query: 840 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT 899
L S+ F+ V +S K +L +S + PG A++G SG+GK+
Sbjct: 322 LKDTIGSIEFENVSFSYP------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKS 369
Query: 900 TLMDVLSG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSPF-VTVYESLLY 955
TL+ +L T G I I I RI G Q+ + F T+ E++
Sbjct: 370 TLIKLLLRLYDPTSGEILIDGIDIRDISLD-SLRKRI-GIVSQDPLL--FSGTIRENIAL 425
Query: 956 SAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLT 1008
P+ E IEE ++L I +L VG GV LS QR+RL
Sbjct: 426 GR-----PDATDE----EIEEALKLANAHEFIANLPDGYDTIVGERGV-NLSGGQRQRLA 475
Query: 1009 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDE 1068
IA L+ NP I+ +DE TS LD A++ ++ + GRT + H+ D
Sbjct: 476 IARALLRNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRL--STIKNADR 532
Query: 1069 LFLMKRG 1075
+ ++ G
Sbjct: 533 IIVLDNG 539
|
Length = 567 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 58/202 (28%), Positives = 81/202 (40%), Gaps = 44/202 (21%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQ 927
L GLS PG AL+G SG GK+T++ D SG I + G +
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE---------ILLDGVDIRD 69
Query: 928 ---ETFARISGYCEQNDIHSP---FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV 981
G Q P T+ E++ Y P D E +EE +
Sbjct: 70 LNLRWLRSQIGLVSQE----PVLFDGTIAENIRYGK----PDATDEE-----VEEAAKKA 116
Query: 982 ELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
+ I SL VG S LS Q++R+ IA L+ NP I+ +DE TS LDA +
Sbjct: 117 NIHDFIMSLPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175
Query: 1035 AIVMRTVRNTVDTGRTVVCTIH 1056
+V + + GRT + H
Sbjct: 176 KLVQEAL-DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 65/258 (25%), Positives = 103/258 (39%), Gaps = 69/258 (26%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
L DVS ++PGR LLGP +GK+TL L + G+++ GHD+ P
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAA 72
Query: 228 AAYIS---QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
A + Q +++VR+ L + A G L+R E A I
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHG----------LSRAEARARIAEL------ 116
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV-GPAL 343
L LGL A+ D+ +R ++GG R+RV ++ PAL
Sbjct: 117 ------------------LARLGL---AER--ADDKVRELNGGHRRRVEIARALLHRPAL 153
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL---------QPAPETYDLFDD 394
L +DE + GLD ++ I HV + +S+L + D
Sbjct: 154 -LLLDEPTVGLDPASRAAIT----AHVRALARDQGLSVLWATHLVDEIEAD-------DR 201
Query: 395 IILLSDGQIVYQG-PREL 411
+++L G+++ G EL
Sbjct: 202 LVVLHRGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 66.6 bits (164), Expect = 2e-12
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 14/103 (13%)
Query: 147 VFEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205
F+++ F+Y P R K +LKDVS IKPG ++GP SGK+TLL L D +
Sbjct: 2 EFKNVSFSY----PGRPK--PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT 55
Query: 206 LKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRE 245
SG + +G D+ + E + AY+ Q D + T+RE
Sbjct: 56 ---SGEILIDGVDLRDLDLESLRKNIAYVPQ-DPFLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 61/251 (24%), Positives = 93/251 (37%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG---HDMGEF 222
I+ V PG +T LLGP SGK+TLL LAG L +G V G H +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRR 71
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
R A + Q + +TVR+ +A G P
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVAL------------------------GRIP----- 102
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ A + + D L L AD + +SGGER+RV +
Sbjct: 103 -HRSLWAGDSPHDAAVVDRALARTELSHLADRDMST-----LSGGERQRVHVARALAQEP 156
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + LD + + +++ +G V++ L D +++L G+
Sbjct: 157 KLLLLDEPTNHLDVRAQLETLALVRELA--ATGVTVVAALHDLNLAASYCDHVVVLDGGR 214
Query: 403 IVYQGPRELVL 413
+V GP VL
Sbjct: 215 VVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 2e-12
Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 28/170 (16%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
LN LS PG L ++G +GAGKTT+MDV++G R G + G ++G P+ Q A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ--IA 75
Query: 932 RISGYCE--QNDIHSPFVTVYESLLYSA----------WLRLPPEVDSETRKMFIEEVME 979
R +G Q +TV+E+L + + RL E IEEV+E
Sbjct: 76 R-AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR-----IEEVLE 129
Query: 980 LVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
+ L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 130 TIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 60/199 (30%), Positives = 91/199 (45%), Gaps = 26/199 (13%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS--GRKTGGYIT-GNITISGYP--KKQ 927
+L+G+ +PG + A++G SG+GKTTL+ ++ + G I G+ITI +Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 928 ETFARI----SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL 983
+ R G+ QN P TV E+++ P V E ++ EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-----PVIVKGEPKEEATARARELL-- 129
Query: 984 KPLIQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
+ VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 1039 RTVRNTVDTGRTVVCTIHQ 1057
T+R RT+V H+
Sbjct: 185 NTIRQLAQEKRTMVIVTHE 203
|
Length = 250 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 28/215 (13%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET---F 930
+LN LS + G +TAL+G +G GK+TL+ + T +G + + P +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQL 74
Query: 931 ARISGYCEQNDIHSPFVTVYESLLY------SAWLRLPPEVDSETRKMFIEEVMELVELK 984
AR Q+ + +TV E + Y S W RL S + + ME +
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRL-----SAEDNARVNQAMEQTRIN 129
Query: 985 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
L + + LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 130 HLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184
Query: 1045 VDTGRTVVCTIHQPGIDIFDA---FDELFLMKRGG 1076
G+TVV +H D+ A D L ++ G
Sbjct: 185 NTQGKTVVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 2e-12
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 884 PGV-LTALMGVSGAGKTTLMDVLSG--RKTGG--YITGNITISGYPKKQ-ETFARISGYC 937
PG +TA+ G SG+GKTTL+ +++G R G + G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 938 EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997
Q P ++V +L Y R++ E V+EL+ + L+ L G
Sbjct: 81 FQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHLLGRLPG----- 130
Query: 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 75/272 (27%), Positives = 114/272 (41%), Gaps = 59/272 (21%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS-----LKVSGRVTYNG 216
++H IL+D+S I+PGR+T LLG +GK+TLL ALAG L +V+G VT NG
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70
Query: 217 HDMGEFVPERTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA 273
+ R A A + Q + AFSAR + RY ARR
Sbjct: 71 EPLAAIDAPRLARLRAVLPQ--------AAQPAFAFSAREIVLLGRY----PHARRAGAL 118
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT 333
+ D ++ +A+A G A +VG + + +SGGE RV
Sbjct: 119 THR---DGEIAWQALALAG-------------------ATALVGRD-VTTLSGGELARVQ 155
Query: 334 TGEMM---------VGPALALFMDEISTGLDSSTTFQI---VNCLKQHVHINSGTAVISL 381
++ P L +DE + LD + ++ V L + ++ V+++
Sbjct: 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNL----GVLAI 211
Query: 382 LQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
+ D I +L+DG IV G VL
Sbjct: 212 VHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 927
+ +L GLS G + G +G GKTTL+ +L+G R G + N T +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 987
+ R Y P ++ E+L + W + IE+ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAA-----IHGGAQRTIEDALAAVGLTGFE 121
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 1048 GRTVVCTIHQP 1058
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 2e-12
Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 32/193 (16%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
L+G+S RPG + AL+G +GAGK+TLM +LSG G I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG----EILIDGKP------VA 73
Query: 933 ISGYCEQND-----IH-----SPFVTVYESLLYSAWLRLP-PEVDSETRKMFIE--EVME 979
S + +H P ++V E++ +D + M E++
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID--RKAMRRRARELLA 131
Query: 980 LVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
+ L +LVG LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 132 RLGLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD 186
Query: 1040 TVRNTVDTGRTVV 1052
+R G ++
Sbjct: 187 LIRRLKAQGVAII 199
|
Length = 500 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 18/208 (8%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITI-----SGYPKKQET 929
L ++ PG + L G SG+GKTTL+ ++ G ++ G++ + G +K+
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQELYGASEKELV 78
Query: 930 FARIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 988
R + GY Q F+T +++ + L L P + + + ++E V L +
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLGDHLD 136
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1047
P LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++ +
Sbjct: 137 YY---PH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
Query: 1048 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
G T++ H I D D + M+ G
Sbjct: 192 GCTILIVTHDN--RILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 68/251 (27%), Positives = 108/251 (43%), Gaps = 51/251 (20%)
Query: 160 SRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS----SLKVSGRVTYN 215
S +K +L D++ I PG + +L GP SGKTT LL L G L S SLKV G+
Sbjct: 15 SLRKQ--VLFDINLEINPGEIVILTGPSGSGKTT-LLTLIGGLRSVQEGSLKVLGQ-ELY 70
Query: 216 GHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
G E V R YI Q N +G +T R+ + + EL L+ +E
Sbjct: 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMAL---------ELQPNLSYQEARE- 120
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
+A A L+ +GL D + D +SGG+++RV
Sbjct: 121 -----------RARA------------MLEAVGLG---DHL--DYYPHNLSGGQKQRVAI 152
Query: 335 GEMMVG-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393
+V P L + DE + LDS + +V +++ G ++ ++ D+ D
Sbjct: 153 ARALVHRPKL-VLADEPTAALDSKSGRDVVELMQKLAR-EQGCTIL-IVTHDNRILDVAD 209
Query: 394 DIILLSDGQIV 404
I+ + DG+++
Sbjct: 210 RIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 67/267 (25%), Positives = 116/267 (43%), Gaps = 52/267 (19%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-R 226
LK+VS ++ G ++LGP SGK+ LL +AG + SG++ NG D+ PE R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
+Y+ Q+ MTV + +A+ + + V +I+ +
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKV--------------------DKKEIERKVL 111
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
IA ++LG+ + + +SGGE++RV +V L
Sbjct: 112 EIA--------------EMLGI-----DHLLNRKPETLSGGEQQRVAIARALVVNPKILL 152
Query: 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+DE + LD T ++ LK+ + G V+ + E + L D + ++ +G+++
Sbjct: 153 LDEPFSALDVRTKEKLREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211
Query: 407 GPRELVLEFFESMGFKCPKRKGVADFL 433
G E V FK PK + VA+FL
Sbjct: 212 GKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 41/235 (17%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKK 926
+L +S G A++G SG+GK+T++ DV SG I I G +
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS---------ILIDGQDIR 66
Query: 927 ---QETFARISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 978
++ R G Q ND T+ ++ Y EV + I +
Sbjct: 67 EVTLDSLRRAIGVVPQDTVLFND------TIGYNIRYGRPDATDEEVIEAAKAAQIHD-- 118
Query: 979 ELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
+++ ++VG G+ LS +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 119 KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1039 RTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLIS 1093
+R V GRT + H+ I +A D++ ++K G + G H +L++
Sbjct: 178 AALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLKDG----RIVERGTHE-ELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 4e-12
Identities = 70/263 (26%), Positives = 111/263 (42%), Gaps = 50/263 (19%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM----GE 221
LKDV+ I G M ++GP +GK+TLL +L G +D + SG + +NG + G+
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74
Query: 222 FVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ + R I Q N + ++V E + G S + L L +E++A
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRL--GYTSTWRSLFGLFSKEDKAQA---- 128
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
+ A+ G I D + A T+ SGG+++RV +V
Sbjct: 129 -----LDALERVG-----ILDKAYQR------ASTL---------SGGQQQRVAIARALV 163
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL----FDDI 395
+ DE LD + ++++ LK ++ G VI L DL D I
Sbjct: 164 QQPKIILADEPVASLDPESAKKVMDILKD-INQEDGITVIVNLH----QVDLAKKYADRI 218
Query: 396 ILLSDGQIVYQGP-RELVLEFFE 417
I L G+IV+ GP EL E +
Sbjct: 219 IGLKAGRIVFDGPASELTDEALD 241
|
Length = 258 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 5e-12
Identities = 53/166 (31%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISG--YPKKQET 929
LN +S G ++G SG+GK+TL +L+G + + +G+I + G K+
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILLDGKPLAPKKRA 77
Query: 930 --FARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 985
F R Q+ S P TV L S LR S+ R I E+++ V L P
Sbjct: 78 KAFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQR---IAELLDQVGLPP 132
Query: 986 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
L P LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 133 SF--LDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 5e-12
Identities = 47/209 (22%), Positives = 77/209 (36%), Gaps = 57/209 (27%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ---E 928
+L +S + PG A++G SG+GK+TL ++ G R T G + + G Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG----RVRLDGADISQWDPN 72
Query: 929 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 988
GY Q+D ++F + E +
Sbjct: 73 ELGDHVGYLPQDD-----------------------------ELFSGSIAENI------- 96
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
LS QR+RL +A L NP I+ +DEP S LD + + + G
Sbjct: 97 ----------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG 146
Query: 1049 RTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077
T + H+P + D + +++ G
Sbjct: 147 ATRIVIAHRPE--TLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 6e-12
Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 14/211 (6%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR--KTGGYITGNITISGYPKKQETFA 931
+L LS PG A++G +GAGKTTL+ +L+G + G +T G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105
Query: 932 RISGYC--EQNDIHSPFVTVYESLL--YSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 987
+ G E ++ TV + +L + A + + E + + ++EL+ K L
Sbjct: 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA 165
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR--NTV 1045
G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 166 DRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS 220
Query: 1046 DTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076
++ H +I F L+K G
Sbjct: 221 PGAPALLFVTHHAE-EIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 7e-12
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
T L D+S ++ G + LLGP +GKTTL+ + G L SG + G D+ +
Sbjct: 11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKE 67
Query: 223 VPE--RTAAYISQHDNHIGEMTVRETLAFS 250
E R Y+ + + +TVRE L S
Sbjct: 68 PEEVKRRIGYLPEEPSLYENLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 7e-12
Identities = 65/260 (25%), Positives = 104/260 (40%), Gaps = 63/260 (24%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
LK+++ I PG ++GP +GK+TLL + ++ S SG + G D+ + +
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGK 72
Query: 226 ------RTAAYISQHDNHIGEMTVRET-----LAFSARCQGVGSRYELLTELARRENEAG 274
R I QH N I +TV E L + + + R+
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRF-------------- 118
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
+ D K A E + D + AD + SGG+++RV
Sbjct: 119 --SEED-----KERALSALERVGLADKAYQR------ADQL---------SGGQQQRVAI 156
Query: 335 GE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG-TAVISLLQPAPETYDL- 391
+ P L L DE LD T+ Q+++ LK+ ++ G T +I+L Q DL
Sbjct: 157 ARALAQQPDLIL-ADEPIASLDPKTSKQVMDYLKR-INKEDGITVIINLHQ-----VDLA 209
Query: 392 ---FDDIILLSDGQIVYQGP 408
D I+ L G+IV+ G
Sbjct: 210 KKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 7e-12
Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 44/240 (18%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
T L D++ I G +LLGP GKTT L +AG + + SGR+ G D+ + P
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPK 70
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+R A + Q+ MTV + +AF + + V P +ID
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKV--------------------PKDEIDER 110
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
++ +A ++L +E + D + +SGG+R+RV G +V
Sbjct: 111 VREVA--------------ELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVREPKV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
MDE + LD+ Q+ LK+ + GT I + E + D I +++DGQI
Sbjct: 152 FLMDEPLSNLDAKLRVQMRAELKR-LQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 7e-12
Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 12/186 (6%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
L +S G L G SGAGK+TL+ ++ G R T G I +S ++ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 932 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
R G Q+ P TVYE++ LP V + + V E+++L L
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVA------LPLRVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
LP S LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1051 VVCTIH 1056
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 8e-12
Identities = 56/218 (25%), Positives = 83/218 (38%), Gaps = 51/218 (23%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-IT-GNITISG---- 922
E K +L G++ + G + A+MG +G+GK+TL + G Y +T G I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 923 -----------------YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAW--LRLPP 963
YP I G VT L +A R
Sbjct: 72 ELSPDERARAGIFLAFQYP------VEIPG-----------VTN-SDFLRAAMNARRGAR 113
Query: 964 EVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022
+ E K ++E EL+ L ++ V G S ++KR I L+ P + +
Sbjct: 114 GILPEFIK-ELKEKAELLGLDEEFLERYVNE----GFSGGEKKRNEILQLLLLEPKLAIL 168
Query: 1023 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1060
DEP SGLD A IV + + GR V+ H +
Sbjct: 169 DEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 8e-12
Identities = 60/214 (28%), Positives = 106/214 (49%), Gaps = 27/214 (12%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP----KKQE 928
V+L+ +S G +T+++G +GAGK+TL+ ++S + +G ITI G +E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS--RLLKKDSGEITIDGLELTSTPSKE 72
Query: 929 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP---PEVDSETRKMFIEEVMELVELKP 985
++S ++N I+S TV + + + R P + E R++ I E +E + L+
Sbjct: 73 LAKKLSILKQENHINSRL-TVRDLVGFG---RFPYSQGRLTKEDRRI-INEAIEYLHLED 127
Query: 986 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
L + LS QR+R IA+ L + + +DEP + LD + + +M+ +R
Sbjct: 128 LSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLA 182
Query: 1046 DT-GRTVVCTIHQPGIDIFDA---FDELFLMKRG 1075
D G+T+V +H DI A D + +K G
Sbjct: 183 DELGKTIVVVLH----DINFASCYSDHIVALKNG 212
|
Length = 252 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 8e-12
Identities = 62/190 (32%), Positives = 92/190 (48%), Gaps = 19/190 (10%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK-QETFARI 933
L+ +S R G + ALMG +GAGK+TL+ +LSG G+I I G + T A +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAAL 77
Query: 934 -SG----YCEQNDIH-SPFVTVYESLLYSAWL-RLPPEVDSETRKMFIEEVMELVELKPL 986
+G Y E +H P +TV E+L +L +LP + R++ E E +L+ L
Sbjct: 78 AAGVAIIYQE---LHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEARE--QLEHL 128
Query: 987 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
+ + LS QR+ + IA L N +I DEPTS L AR + R +R
Sbjct: 129 GVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188
Query: 1047 TGRTVVCTIH 1056
GR ++ H
Sbjct: 189 EGRVILYVSH 198
|
Length = 501 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 8e-12
Identities = 68/220 (30%), Positives = 104/220 (47%), Gaps = 22/220 (10%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ET 929
LL+ LS F G +T L+G +G+GK+TL+ +L GR G I + P + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKA 82
Query: 930 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-----PEVDSETRKMFIEEVMELVELK 984
FAR Y Q + +TV E + A R P + R+ +EE + LV LK
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELV---AIGRYPWHGALGRFGAADREK-VEEAISLVGLK 138
Query: 985 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RN 1043
PL L V LS +R+R IA+ + + + +DEPTS LD V+ V R
Sbjct: 139 PLAHRL-----VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193
Query: 1044 TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083
+ + G TV+ +H I++ + + + RGG+ I G
Sbjct: 194 SQERGLTVIAVLHD--INMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 8e-12
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 11/175 (6%)
Query: 885 GVLTALMGVSGAGKTTLMDVLSG---RKTGGYITGNITISGYPKKQETFARISGYCEQND 941
G + L+G +GAGKTT ++ G R G I + IS P I GY Q
Sbjct: 29 GEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI-GYLPQEA 87
Query: 942 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 1001
++VY++L+ A L++ ++ +E R+ E+ME ++ L S+ G S LS
Sbjct: 88 SIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM----GQS-LSG 140
Query: 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
+R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+ T H
Sbjct: 141 GERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDH 195
|
Length = 241 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 8e-12
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 12/186 (6%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISGYPKKQETFA 931
L+ +S R G L G SGAGKTTL+ +L G T G ++ +Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 932 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
R G Q+ P TVYE++ +R E + + R + + V L+ +
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEHKADAF 134
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G T
Sbjct: 135 ---PEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTT 189
Query: 1051 VVCTIH 1056
V+ H
Sbjct: 190 VIVATH 195
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 9e-12
Identities = 54/199 (27%), Positives = 80/199 (40%), Gaps = 39/199 (19%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+L VS + PG +LGP SGK+TLL LAG LD G VT +G + +
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 227 TAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+S D H+ + TVRE L + + EL L R G+
Sbjct: 407 VRRRVSVCAQDAHLFDTTVRENLRLAR---PDATDEELWAALER----VGLADWLR---- 455
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
L DT++G E +SGGER+R+ ++ A
Sbjct: 456 ----------------------ALPDGLDTVLG-EGGARLSGGERQRLALARALLADAPI 492
Query: 345 LFMDEISTGLDSSTTFQIV 363
L +DE + LD+ T +++
Sbjct: 493 LLLDEPTEHLDAETADELL 511
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 9e-12
Identities = 70/286 (24%), Positives = 108/286 (37%), Gaps = 87/286 (30%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV-SGRVTYNGH 217
+ + ++DVS ++PG + ++G SGK+TL LAL G L ++ SG V +G
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 218 DMGEFVPE-------RTAAYISQH-----------DNHIGEMTVRETLAFSARCQGVGSR 259
D+ + A I Q + I E
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREA------------------ 117
Query: 260 YELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319
L + +R E +A+ L+ +GL D D
Sbjct: 118 LRLHGKGSRAEARK------------RAVE------------LLEQVGLP---DPERRDR 150
Query: 320 MIRGISGGERKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINS 374
+SGG R+RV M+ ALA L DE +T LD +T QI++ LK
Sbjct: 151 YPHQLSGGMRQRV-----MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQ-REL 204
Query: 375 GTAVISLLQPAPETYDL------FDDIILLSDGQIVYQGPRELVLE 414
G AV+ + T+DL D ++++ G+IV GP E +L
Sbjct: 205 GMAVLFI------THDLGVVAELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 11/149 (7%)
Query: 885 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFA-RISGYCEQNDIH 943
G L AL+G SG+GK+TL+ +++G + +G I ++G + R G+ Q+
Sbjct: 26 GSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRKIGFVFQHYAL 83
Query: 944 SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 1003
+TV +++ + +R P K +EE++ELV+L+ L P + LS Q
Sbjct: 84 FKHLTVRDNIAFGLEIRKHP---KAKIKARVEELLELVQLEGLGDRY---P--NQLSGGQ 135
Query: 1004 RKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
R+R+ +A L P ++ +DEP LDA+
Sbjct: 136 RQRVALARALAVEPQVLLLDEPFGALDAK 164
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-11
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 18/133 (13%)
Query: 899 TTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS----GYCEQNDIHSPFVTVYESLL 954
+TL+ +++G +G I + G + ++ G Q+ P +TV E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 955 YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV 1014
+ + EE +E V L + V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALL 106
Query: 1015 ANPSIIFMDEPTS 1027
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 18/182 (9%)
Query: 885 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQND-IH 943
G + AL+GV+G+GK+TL L G +G I+I G P +Q + Y Q++ +
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 944 SPFVTVYESLL------YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997
F + E ++ + WLR + D + + + V++ +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI----VTAALARVDMVEFRHRQIG----- 141
Query: 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1057
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN 201
Query: 1058 PG 1059
G
Sbjct: 202 LG 203
|
Length = 272 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 1e-11
Identities = 41/180 (22%), Positives = 65/180 (36%), Gaps = 61/180 (33%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
L+G+S + R G + AL+G +GAGK+TLM +LSG + G I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS----GEILVDGKEV------- 64
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 992
SP + R+ I V +L
Sbjct: 65 --------SFASP---------------------RDARRAGIAMVYQL------------ 83
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
S +R+ + IA L N ++ +DEPT+ L + + +R G V+
Sbjct: 84 -------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 60/218 (27%), Positives = 94/218 (43%), Gaps = 26/218 (11%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE 928
D +L +S G AL+G SG+GK+TL++++ + +G I I G+ +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDY 69
Query: 929 TFA---RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 985
T A R G Q D+ TV E++ Y P E +EE
Sbjct: 70 TLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR-----PGATREE----VEEAARAANAHE 119
Query: 986 LIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
I L +G GV LS QR+R+ IA L+ +P I+ +DE TS LD + +V
Sbjct: 120 FIMELPEGYDTVIGERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQ 178
Query: 1039 RTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076
+ + RT H+ I +A D + +++ G
Sbjct: 179 AALERLMK-NRTTFVIAHRLST-IENA-DRIVVLEDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 1e-11
Identities = 59/256 (23%), Positives = 99/256 (38%), Gaps = 61/256 (23%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV 223
+ L+ VS ++ G + LLG +GKTTLL + G + SGR+ ++G D+
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLP 71
Query: 224 PERTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
P A AY+ + +TV E LL R ++ + D
Sbjct: 72 PHERARLGIAYVPEGRRIFPRLTVEEN---------------LLLGAYARRDKEAQERDL 116
Query: 280 DIDVYMKAIATEGQEANVITDYY--LKVLGLEVCADTMVGDEMIRG----ISGGERKRVT 333
+ +VY + + LK E +SGGE++ +
Sbjct: 117 E-EVY---------------ELFPRLK--------------ERRNQRAGTLSGGEQQMLA 146
Query: 334 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392
+M P L L +DE S GL +I +K+ + G ++ + Q A ++
Sbjct: 147 IARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIKE-LRKEGGMTILLVEQNARFALEIA 204
Query: 393 DDIILLSDGQIVYQGP 408
D +L +G+IV G
Sbjct: 205 DRGYVLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 68/258 (26%), Positives = 105/258 (40%), Gaps = 49/258 (18%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF-VPER 226
L DVS I G + LLGP SGKTTLL +AG L+ SG + + G D + V ER
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG-LERP--DSGTILFGGEDATDVPVQER 74
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
++ QH MTV + +AF R + + R EA I+
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPR----------SERPPEAEIR---------- 114
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
A V LK++ L+ AD +SGG+R+RV + L
Sbjct: 115 --------AKV--HELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLL 159
Query: 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI--- 403
+DE LD+ ++ L++ +H + + E ++ D +++++ G+I
Sbjct: 160 LDEPFGALDAKVRKELRRWLRR-LHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218
Query: 404 -----VYQGPR-ELVLEF 415
VY P V F
Sbjct: 219 GTPDEVYDHPASPFVYSF 236
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 62/228 (27%), Positives = 102/228 (44%), Gaps = 36/228 (15%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
L+ +S G L AL+G SG+GKTTL+ +++G R G I G + P ++
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---- 73
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 991
R G+ Q+ +TV++++ + LR+ P + +V EL++ LV
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLK-------LV 124
Query: 992 GLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
L + + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 125 QLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD 184
Query: 1047 -TGRTVVCTIHQPGIDIFDAF---DELFLMKRG-------GQEIYVGP 1083
T V H D +A D + +M +G E+Y P
Sbjct: 185 ELHVTTVFVTH----DQEEALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 1e-11
Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 35/248 (14%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 934
++ +S PG + L+G +GAGKTT ++ G G IT +G P QE RI
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRI- 74
Query: 935 GYC-EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE-LKPLIQSLVG 992
GY E+ ++ P +TV + L Y A L+ P+ + + + E +E+V I+ L
Sbjct: 75 GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKEL-- 131
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
S ++++ ++ P ++ +DEP SGLD ++ + + G T++
Sbjct: 132 -------SKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATII 184
Query: 1053 CTIHQPGIDIFDAFDEL---FLMKRGGQEIYVGPL-------GR-----HSCQLISYFEA 1097
+ H+ + +EL LM + GQ + G + G+ S +
Sbjct: 185 FSSHR-----MEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIESDLSLEELAN 239
Query: 1098 IPGVEKIK 1105
IPG+ KI
Sbjct: 240 IPGILKIT 247
|
Length = 300 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-11
Identities = 65/255 (25%), Positives = 114/255 (44%), Gaps = 57/255 (22%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
L D++ IK G++T L+G +GK+TLL L G L + G + NG D+ + PE
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+ +++SQ+ ++ T+RE + LL + E
Sbjct: 392 AWRKQISWVSQN-PYLFAGTIRENI--------------LLARPDASDEE---------- 426
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ A +A + ++ K GL DT++G+ G+SGG+ +R+ ++ PA
Sbjct: 427 --IIAAL---DQAGL-LEFVPKPDGL----DTVIGEGG-AGLSGGQAQRLALARALLSPA 475
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-----FDDIIL 397
L +DE + LD+ T I+ L++ V+ + T+ L D I++
Sbjct: 476 SLLLLDEPTAHLDAETEQIILQALQEL---AKQKTVLVI------THRLEDAADADRIVV 526
Query: 398 LSDGQIVYQG-PREL 411
L +G++V QG EL
Sbjct: 527 LDNGRLVEQGTHEEL 541
|
Length = 559 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 21/193 (10%)
Query: 889 ALMGVSGAGKTTLMDVLSG--RKTGGYITGNIT-ISGYPKKQETFARISGYCEQNDIHSP 945
++G +G+GK+ L++ ++G + G I N I+ P ++ Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 946 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM---ELVELKPLIQSLVGLPGVSGLSTE 1002
+TVY+++ Y R + + E + + I E++ L+ KP LS
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------LSGG 133
Query: 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDI 1062
+++R+ IA LV NP I+ +DEP S LD R + ++ V + +
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193
Query: 1063 FDAFDELFLMKRG 1075
+ D++ +M G
Sbjct: 194 WALADKVAIMLNG 206
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 73/275 (26%), Positives = 118/275 (42%), Gaps = 58/275 (21%)
Query: 147 VFEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205
FE++ F Y +LKDVS I G+ ++GP SGK+T+L L D S
Sbjct: 2 EFENVTFAY-------DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS 54
Query: 206 LKVSGRVTYNGHDMGEFVPERTAAYISQHD--NHIGEMTVRETLAFSARCQGVGSRYELL 263
SG + +G D+ E ++ IG + ++T+ F+
Sbjct: 55 ---SGSILIDGQDIRE---------VTLDSLRRAIG-VVPQDTVLFNDTI---------- 91
Query: 264 TELARRENEAGIKPDP-DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322
N +PD D +V A A + I D K++ DT+VG+ R
Sbjct: 92 -----GYNIRYGRPDATDEEVIEAAKAAQ------IHD---KIMRFPDGYDTIVGE---R 134
Query: 323 G--ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS 380
G +SGGE++RV ++ L +DE ++ LD+ T +I L+ ++ G I
Sbjct: 135 GLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD---VSKGRTTIV 191
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLE 414
+ + D II+L DG+IV +G EL+ +
Sbjct: 192 IAHRLSTIVNA-DKIIVLKDGRIVERGTHEELLAK 225
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 33/220 (15%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISG----Y 923
D L G++ G + AL+G +GAGK+TL +G + T +G + I G Y
Sbjct: 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPIKY 68
Query: 924 PKKQETFARIS-GYCEQN---DIHSPFVTVYESLLYSAW-LRLPPEVDSETR-KMFIEEV 977
KK R + G QN + +P TV E + + L L E + E R K ++ V
Sbjct: 69 DKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKE-EVEKRVKEALKAV 125
Query: 978 -MELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
ME E KP P LS Q+KR+ IA L P II +DEPTSGLD A+
Sbjct: 126 GMEGFENKP--------P--HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175
Query: 1037 VMRTVRNTVDTGRTVVCTIHQPGIDIFDAF-DELFLMKRG 1075
+M+ + + G T++ + H +D+ + D++++M G
Sbjct: 176 IMKLLYDLNKEGITIIISTHD--VDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 26/215 (12%)
Query: 885 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITG-NITISGYPKKQETFARISGYCEQNDIH 943
G + AL+G SG+GK+TL+ LSG TG G +I + G ++E R++ ++ +
Sbjct: 30 GEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE--GRLARDIRKSRAN 87
Query: 944 SPFV----------TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 993
+ ++ +V E++L A P T + + L+ L + VG+
Sbjct: 88 TGYIFQQFNLVNRLSVLENVLIGALGSTPF---WRTCFSWFTREQKQRALQALTR--VGM 142
Query: 994 PG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 1047
VS LS Q++R+ IA L+ +I DEP + LD +A IVM T+R+
Sbjct: 143 VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND 202
Query: 1048 GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082
G TVV T+HQ +D + E + R G Y G
Sbjct: 203 GITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-11
Identities = 73/282 (25%), Positives = 121/282 (42%), Gaps = 74/282 (26%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F ++ F Y P ++ L +VS I+PG ++G SGK+TLL L G +
Sbjct: 466 FRNVSFAY----PGQETP--ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT- 518
Query: 207 KVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL 263
G V +G D+ + P R Y+ Q D + T+R+ +A A + E +
Sbjct: 519 --EGSVLLDGVDIRQIDPADLRRNIGYVPQ-DPRLFYGTLRDNIALGAP----YADDEEI 571
Query: 264 TELARRENEAG----IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319
A AG ++ PD GL D +G E
Sbjct: 572 LRAAEL---AGVTEFVRRHPD--------------------------GL----DMQIG-E 597
Query: 320 MIRGISGGERKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV 378
R +SGG+R+ V ++ P + L +DE ++ +D+ + + + LK+ + +G +
Sbjct: 598 RGRSLSGGQRQAVALARALLRDPPI-LLLDEPTSAMDNRSEERFKDRLKRWL---AGKTL 653
Query: 379 I------SLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
+ SLL DL D II++ +G+IV GP++ VLE
Sbjct: 654 VLVTHRTSLL-------DLVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 19/158 (12%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
+N +S + L+G +GAGK+TL+ +++G R T +G I G+P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 992
I E ++ +T E+L L P DS I+EV+ +V+L + G
Sbjct: 72 IGSLIESPPLYEN-LTARENLKVHTTLLGLP--DSR-----IDEVLNIVDL-----TNTG 118
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
S ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 119 KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 3e-11
Identities = 73/276 (26%), Positives = 112/276 (40%), Gaps = 65/276 (23%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T + D+S IK G LLGP GKTTLL +AG S SG + +G D+ + PE
Sbjct: 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPE 75
Query: 226 -RTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
R + Q H MTV E +AF + + + E+ R EA
Sbjct: 76 KRPIGMVFQSYALFPH------MTVEENVAFGLKVRKKLKK----AEIKARVEEA----- 120
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
L+++GLE AD +SGG+++RV +
Sbjct: 121 ------------------------LELVGLEGFADRKPHQ-----LSGGQQQRVALARAL 151
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398
V L +DE + LD+ Q+ LK+ + G + + E + D I ++
Sbjct: 152 VPEPKVLLLDEPLSALDAKLREQMRKELKE-LQRELGITFVYVTHDQEEALAMSDRIAVM 210
Query: 399 SDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
+DG+I G P E+ ++ P + VADF+
Sbjct: 211 NDGRIEQVGTPEEI---------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 60/260 (23%), Positives = 99/260 (38%), Gaps = 61/260 (23%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHD---MGE 221
LKD+S I G +T L+GP GK+TLL L L G V +G D +
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 222 FVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
V E R + Q N ++ + +A+ R G+ + EL R EA
Sbjct: 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLK----EELDERVEEA------ 123
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGL--EVCADTMVGDEMIRGISGGERKRVTTGE- 336
L+ L EV G+SGG+++R+
Sbjct: 124 -----------------------LRKAALWDEVKDRLHA-----LGLSGGQQQRLCLARA 155
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI----SLLQPAPETYDLF 392
+ P + L +DE ++ LD +T +I + + + ++ ++ Q A +
Sbjct: 156 LANEPEV-LLLDEPTSALDPISTAKIEELIAE---LKKEYTIVIVTHNMQQAA----RVA 207
Query: 393 DDIILLSDGQIVYQGPRELV 412
D L +G++V GP E +
Sbjct: 208 DRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-11
Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 27/202 (13%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP----KKQETF 930
L + G A++G SG+GK+TL+ +L+G G+IT++G +Q
Sbjct: 354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEIASLDEQALR 411
Query: 931 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
IS ++ + S T+ ++L + P+ E + ++ V L+ L++S
Sbjct: 412 ETISVLTQRVHLFSG--TLRDNLRLAN-----PDASDEE----LWAALQQVGLEKLLESA 460
Query: 991 -------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
+G G LS +R+RL +A L+ + + +DEPT GLD V+ +
Sbjct: 461 PDGLNTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE 519
Query: 1044 TVDTGRTVV-CTIHQPGIDIFD 1064
+ G+T++ T G++ D
Sbjct: 520 HAE-GKTLLMVTHRLRGLERMD 540
|
Length = 573 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 4e-11
Identities = 64/259 (24%), Positives = 109/259 (42%), Gaps = 60/259 (23%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM-GEFV 223
L L DVS ++PG + L+GP +GKTTL ++G L + SG V ++G D+ G
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPP 69
Query: 224 PERTAAYIS---QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
E I Q E+TV E + +A+ + + LL ARRE
Sbjct: 70 HEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREER-------- 118
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE---- 336
EA + L+ +GL AD G+ +S G+++R+ E
Sbjct: 119 -------------EARERAEELLERVGLADLADRPAGE-----LSYGQQRRL---EIARA 157
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHIN-SGTAVI------SLLQPAPETY 389
+ P L L +DE + GL+ T ++ +++ + G V+ ++
Sbjct: 158 LATDPKL-LLLDEPAAGLNPEETEELAELIRE---LRERGITVLLVEHDMDVV------M 207
Query: 390 DLFDDIILLSDGQIVYQGP 408
L D + +L G+++ +G
Sbjct: 208 SLADRVTVLDQGRVIAEGT 226
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 4e-11
Identities = 66/279 (23%), Positives = 100/279 (35%), Gaps = 81/279 (29%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL V + G + +LG SGK+TLL + G L G + +G D+ + E
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL---RPDKGEILIDGEDIPQLSEE 78
Query: 226 RTAA------YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ Q +TV E +AF R E P+
Sbjct: 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR-------------------EHTKLPES 119
Query: 280 DID--VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM 337
I V MK L+++GL D +SGG RKRV
Sbjct: 120 LIRELVLMK----------------LELVGL----RGAAADLYPSELSGGMRKRV----- 154
Query: 338 MVGPALA---------LFMDEISTGLDSSTTFQIVNCLKQHVHINS--GTAVISLLQPAP 386
ALA LF+DE ++GLD + I ++ +N G VI +
Sbjct: 155 ----ALARAIALDPELLFLDEPTSGLDPISAGVIDELIR---ELNDALGLTVIMVTHDLD 207
Query: 387 ETYDLFDDIILLSDGQIVYQGPRE--------LVLEFFE 417
+ D + +L+DG+++ +G E V +FF
Sbjct: 208 SLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFFN 246
|
Length = 263 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 4e-11
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 25/166 (15%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
L +S + + G L+G SG GKTTL+ +++G R+T G I G I+ P ++ +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY- 78
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 991
G Q+ P +TV +++ Y + R M EV E V + LV
Sbjct: 79 ---GIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERVAE---LLDLV 122
Query: 992 GLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
GLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 123 GLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 4e-11
Identities = 74/318 (23%), Positives = 130/318 (40%), Gaps = 71/318 (22%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL---- 202
F+ + F Y P KK L D+S I G T L+G SGK+T+ + G L
Sbjct: 8 FKHVSFTY----PDSKK--PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD 61
Query: 203 --DSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRY 260
+S + V G +T + + + E+ DN TV + +AF + V R
Sbjct: 62 NPNSKITVDG-ITLTAKTVWD-IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV-PRP 118
Query: 261 ELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320
E++ + + G+ DY D
Sbjct: 119 EMIKIVRDVLADVGM-----------------------LDYI---------------DSE 140
Query: 321 IRGISGGERKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
+SGG+++RV G + V P + + +DE ++ LD + QI+ ++ + + VI
Sbjct: 141 PANLSGGQKQRVAIAGILAVEPKI-IILDESTSMLDPAGKEQILKLIR-KLKKKNNLTVI 198
Query: 380 SLLQPAPETYDLFDDIILLSDGQIVYQG-PRELV--LEFFESMGFKCP---------KRK 427
S+ E ++ D +++L DG+++ QG P E+ +E + +G P K K
Sbjct: 199 SITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEK 257
Query: 428 GVADFLQEVTSRKDQKQY 445
G++ QE+ + + QY
Sbjct: 258 GIS-VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 4e-11
Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 38/216 (17%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGY-P-KKQETFARISGYCEQ 939
G + +G +GAGK+T + +L+G T G + ++G P +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR----VNGKDPFRRREEYLRSIGLV-- 102
Query: 940 NDIHSPFVTVYESLLYSAW----------LRLPPEVDSETRKMFIEEVMELVELKPLIQS 989
+ L W L+L E+ + ++ + E+++L+ ++
Sbjct: 103 -------MGQKLQLW---WDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW 152
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1048
V LS QR R +A L+ P ++F+DEPT GLD A A + ++ +
Sbjct: 153 -----PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQ 207
Query: 1049 RTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084
TV+ T H DI D + L+ + GQ ++ G L
Sbjct: 208 ATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-11
Identities = 65/252 (25%), Positives = 103/252 (40%), Gaps = 63/252 (25%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP--- 224
L +VS I+ G ++G SGK+TLL LAG + SG V +G D+ + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP----DPD 280
R Y+ Q D + T+R+ + A + +L A AG+ P+
Sbjct: 77 RRNIGYVPQ-DVTLFYGTLRDNITLGA---PLADDERIL-RAAEL---AGVTDFVNKHPN 128
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
GL D +G E RG+SGG+R+ V ++
Sbjct: 129 --------------------------GL----DLQIG-ERGRGLSGGQRQAVALARALLN 157
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI-----SLLQPAPETYDLFDDI 395
L +DE ++ +D ++ ++ L+Q + T +I SLL DL D I
Sbjct: 158 DPPILLLDEPTSAMDMNSEERLKERLRQ--LLGDKTLIIITHRPSLL-------DLVDRI 208
Query: 396 ILLSDGQIVYQG 407
I++ G+IV G
Sbjct: 209 IVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 5e-11
Identities = 72/266 (27%), Positives = 107/266 (40%), Gaps = 46/266 (17%)
Query: 149 EDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV 208
E + + R IL D+S + PG ++GP +GKTTLL L G+ S
Sbjct: 29 EPLIELKNVSVRRNGK-KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--- 84
Query: 209 SGRVTYNGHDMG--EFVPE--RTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRYEL 262
SG VT G G E + E + +S H+ TVR+ + S +G E
Sbjct: 85 SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVL-SGFFASIGIYQED 143
Query: 263 LTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322
LT A A L++LG + AD G
Sbjct: 144 LTAE------------------DLAAAQW----------LLELLGAKHLADRPFGS---- 171
Query: 323 GISGGERKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL 381
+S GE++RV +V P L L +DE + GLD Q++N L++ A++ +
Sbjct: 172 -LSQGEQRRVLIARALVKDPEL-LILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFV 229
Query: 382 LQPAPETYDLFDDIILLSDGQIVYQG 407
A E F +LL +G++V QG
Sbjct: 230 THHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 5e-11
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 18/209 (8%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-ETFA 931
+L+ LS G L AL+G SG GKTTL+ ++G +TG I I+
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 991
R QN P + V +++ + + P+ D R + + ++LV L
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLGDAAAH-- 133
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GR 1049
LP + LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 134 -LP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 1050 TVVCTIHQPGIDIFDAF---DELFLMKRG 1075
T++C H D DA D+ +MK G
Sbjct: 191 TILCVTH----DQDDALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 6e-11
Identities = 69/278 (24%), Positives = 119/278 (42%), Gaps = 66/278 (23%)
Query: 147 VFEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205
F+++ F Y PSR ILK +S I PG+ L+G GK+T++ L D +
Sbjct: 2 EFKNVSFRY----PSRPDV-PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT 56
Query: 206 LKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYEL 262
SG + +G D+ + +SQ + + + T+ E + +
Sbjct: 57 ---SGEILLDGVDIRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRYG------------ 100
Query: 263 LTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322
KPD + +A +AN I D+ ++ L DT+VG+ R
Sbjct: 101 -------------KPDATDEEVEEAAK----KAN-IHDF---IMSLPDGYDTLVGE---R 136
Query: 323 G--ISGGERKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
G +SGG+++R+ ++ P + L +DE ++ LD+ + + L + T VI
Sbjct: 137 GSQLSGGQKQRIAIARALLRNPKI-LLLDEATSALDAESEKLVQEALDR-AMKGRTTIVI 194
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQG-PRELV 412
S ++ A D I +L +GQ+V QG EL+
Sbjct: 195 AHRLSTIRNA-------DLIAVLQNGQVVEQGTHDELM 225
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 6e-11
Identities = 69/271 (25%), Positives = 113/271 (41%), Gaps = 64/271 (23%)
Query: 147 VFEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205
F+++ F Y +L+D+S I G L+GP SGK+TL+ + D
Sbjct: 2 EFKNVTFRY------PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD 55
Query: 206 LKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYEL 262
SGR+ +GHD+ ++ R +SQ D + TV E +A+
Sbjct: 56 ---SGRILIDGHDVRDYTLASLRRQIGLVSQ-DVFLFNDTVAENIAYGRP---------- 101
Query: 263 LTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322
R E E + A A E I + L DT++G+ R
Sbjct: 102 --GATREEVEEAAR---------AANAHE-----FIME-------LPEGYDTVIGE---R 135
Query: 323 GI--SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI- 379
G+ SGG+R+R+ ++ L +DE ++ LD+ + + L + + N T VI
Sbjct: 136 GVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAAL-ERLMKNRTTFVIA 194
Query: 380 ---SLLQPAPETYDLFDDIILLSDGQIVYQG 407
S ++ A D I++L DG+IV +G
Sbjct: 195 HRLSTIENA-------DRIVVLEDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 6e-11
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 933
L +S G L ++G SG GKTTL+++++G T G+I ++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 934 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 993
G QN+ P++ V +++ + LR ++ R+ +++ LV L+ +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-- 130
Query: 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
LS R+R+ IA L P ++ +DEP LDA
Sbjct: 131 ---WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 7e-11
Identities = 66/252 (26%), Positives = 101/252 (40%), Gaps = 47/252 (18%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE- 225
+L+D+S I PG ++G SGK+TLL L G GR+ +G D+ +
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLAS 544
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD-PDID 282
R Y+ Q D + ++RE +A P+ D +
Sbjct: 545 LRRQVGYVLQ-DPFLFSGSIRENIALGN-------------------------PEATDEE 578
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ A E + L + DT VG E +SGG+R+R+ ++
Sbjct: 579 IIEAAQLAGAHEF---------IENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKP 628
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE ++ LD T I+ L Q I G VI ++ T D II+L G+
Sbjct: 629 KILLLDEATSALDPETEAIILQNLLQ---ILQGRTVI-IIAHRLSTIRSADRIIVLDQGK 684
Query: 403 IVYQGPRELVLE 414
IV QG E +L
Sbjct: 685 IVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 7e-11
Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 97/259 (37%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
LKD++ + G + ++GP SGK++LL AL G+L+ K+SG V+ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG---------- 66
Query: 227 TAAYISQ---HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP---DPD 280
+ AY+SQ N T+RE + F G ++ R + IK +PD
Sbjct: 67 SIAYVSQEPWIQN----GTIRENILF-------GKPFD-----EERYEKV-IKACALEPD 109
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI--SGGERKRVTTGEMM 338
+++ TE +G+ +GI SGG+++R+
Sbjct: 110 LEILPDGDLTE------------------------IGE---KGINLSGGQKQRI------ 136
Query: 339 VGPALA---------LFMDEISTGLDSSTTFQIV-NCLKQHVHINSGTAV-----ISLLQ 383
+LA +D+ + +D+ I NC+ + +N+ T + + LL
Sbjct: 137 ---SLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL-LNNKTRILVTHQLQLLP 192
Query: 384 PAPETYDLFDDIILLSDGQ 402
A D I++L +G+
Sbjct: 193 HA-------DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 8e-11
Identities = 55/236 (23%), Positives = 87/236 (36%), Gaps = 48/236 (20%)
Query: 177 PGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMGEFVP--ERTAAYIS 232
+T + G +GK+TLL +AG K D V +P +R +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEG 292
Q + VRE LAF + + + EL
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVDEL-------------------------- 115
Query: 293 QEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG-PALALFMDEIS 351
L +LGL+ + + +SGGE++RV + P L L +DE
Sbjct: 116 ----------LDLLGLD-----HLLNRYPAQLSGGEKQRVALARALAAQPEL-LLLDEPF 159
Query: 352 TGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ LD + Q++ LKQ + N VI + E L D I+++ DG++ Y G
Sbjct: 160 SALDRALRLQLLPELKQ-IKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 8e-11
Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 32/187 (17%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTL------MDVLSGRKTGGYITGNITISG---YPK 925
LN +S F P +TAL+G SG+GK+TL M+ L+ T ITG+I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 926 KQETF---ARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV 981
+ +T I +Q + PF +++YE+++Y LRL D + +E+ ++
Sbjct: 78 RTDTVDLRKEIGMVFQQPN---PFPMSIYENVVYG--LRLKGIKDKQVLDEAVEKSLKGA 132
Query: 982 ----ELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
E+K L S +GL G Q++R+ IA L +P II +DEPTS LD +A
Sbjct: 133 SIWDEVKDRLHDSALGLSG------GQQQRVCIARVLATSPKIILLDEPTSALDPISAGK 186
Query: 1037 VMRTVRN 1043
+ T+
Sbjct: 187 IEETLLG 193
|
Length = 252 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 8e-11
Identities = 54/182 (29%), Positives = 82/182 (45%), Gaps = 29/182 (15%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 931
L+ S +PG AL+G SG+GK+T+ +++G + G I G P+++
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 932 RISG---YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSE--TRKMFIEEVMELVELKPL 986
++ +Q DI TV ++L + W P+ D + I +V
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDV--------- 597
Query: 987 IQSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
I S G G + LS QR+RL IA LV NPSI+ +DE TS LD I+
Sbjct: 598 ITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDN 657
Query: 1041 VR 1042
+R
Sbjct: 658 LR 659
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 8e-11
Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 13/186 (6%)
Query: 882 FRPGVLTALMGVSGAGKTTLMDVLS---GRKTGGYITGNITISG---YPKKQETFA--RI 933
+ G + AL+G SG GKTT + ++ G +TG I + G Y + + A R
Sbjct: 27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRR 86
Query: 934 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 993
G Q P ++V+++++ A L+L D + E + L ++ +
Sbjct: 87 VGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKT 144
Query: 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--MRTVRNTVDTGRTV 1051
P +GLS Q++RL IA L P I+ MDEPTS LD + A + + T V T V
Sbjct: 145 PA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIV 203
Query: 1052 VCTIHQ 1057
+HQ
Sbjct: 204 THNMHQ 209
|
Length = 252 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 8e-11
Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 18/213 (8%)
Query: 871 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETF 930
+L G+S + G + A++G SG+GK+TL+ +L G +G + +G + +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 931 ARISGYCEQNDIHSPFVTVYESLL--YSAW--LRLPPEVDSETRKMFIEEVMELVELKPL 986
+ + + F+ + LL ++A + +P + ++ K E E++E L
Sbjct: 75 NERA---KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL 131
Query: 987 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRTVRN 1043
+ P S LS +R+R+ IA LV PS++ DEPT LD A I+ M +
Sbjct: 132 EHRINHRP--SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189
Query: 1044 TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076
++T VV H + D + MK G
Sbjct: 190 ELNTSFLVV--THDLE--LAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 9e-11
Identities = 54/192 (28%), Positives = 83/192 (43%), Gaps = 24/192 (12%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT---GNITISGYPKKQET 929
L G+S G + AL+G +GAGKTTL+ + G R G I +IT
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDIT------GLPP 72
Query: 930 FARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKP 985
R Y + P +TV E+LL A+ R D E ++ +EEV EL LK
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYAR----RDKEAQERDLEEVYELFPRLKE 128
Query: 986 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 129 RRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 1046 DTGRTVVCTIHQ 1057
G + + Q
Sbjct: 184 KEGGMTILLVEQ 195
|
Length = 237 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 9e-11
Identities = 65/253 (25%), Positives = 106/253 (41%), Gaps = 36/253 (14%)
Query: 833 PKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMG 892
M LP P E + + Q+ +L G+S A + G ++G
Sbjct: 321 AAAERMPLP-APQGALSVERLTAAPPGQKK----------PILKGISFALQAGEALGIIG 369
Query: 893 VSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTV 949
SG+GK+TL +L G +G++ + G +Q E R GY Q D+ T+
Sbjct: 370 PSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQLGRHIGYLPQ-DVELFDGTI 426
Query: 950 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-------VGLPGVSGLSTE 1002
E++ R E D E + E L + LI L +G G + LS
Sbjct: 427 AENIA-----RFGEEADPEK----VIEAARLAGVHELILRLPQGYDTRIG-EGGATLSGG 476
Query: 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDI 1062
QR+R+ +A L +P ++ +DEP S LD+ A + + G TVV H+P
Sbjct: 477 QRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--A 534
Query: 1063 FDAFDELFLMKRG 1075
+ D++ +++ G
Sbjct: 535 LASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 1e-10
Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 24/164 (14%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI---TGNITISGYPKKQETFA 931
L+ +S + G + +G +GAGK+T M +++G Y+ +G++ + G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 932 --RISGYCEQNDIHSPF---VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 986
R GY + H+P + V E L + A + + + K +EE++ELV L+P
Sbjct: 73 VQRNIGYLPE---HNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPE 126
Query: 987 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+G LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 1e-10
Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 22/161 (13%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG---RKTGGYITGNITISGYPKKQETFA 931
L G+S G +T ++G +G GKTTL+ L G K+G I+ P
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----PHE 71
Query: 932 RIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 988
R Y Q P +TV E+LL R I + E+ EL P+++
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAAL-------PRRSRKIPD--EIYELFPVLK 122
Query: 989 SLVGLPGVSG-LSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028
++G G G LS Q+++L IA LV P ++ +DEPT G
Sbjct: 123 EMLGRRG--GDLSGGQQQQLAIARALVTRPKLLLLDEPTEG 161
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 2e-10
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG 220
R T L +VS +K G + L+GP SGK+TLL A+AG L + SG + +G D+
Sbjct: 8 RYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIA 64
Query: 221 EFVPE---RTAAYISQ 233
+ E R Y+ Q
Sbjct: 65 KLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 64/263 (24%), Positives = 113/263 (42%), Gaps = 66/263 (25%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+L DVS I G +T ++GP +GK+T LL++ +L K SG +T +G ++ +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKST-LLSMMSRLLK--KDSGEITIDGLELTSTPSK 71
Query: 226 RTAAYIS--QHDNHIG-EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
A +S + +NHI +TVR+ + F R+ P
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGF--------GRF----------------P----- 102
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
Y + T+ E I + ++ L LE + D + +SGG+R+R +
Sbjct: 103 -YSQGRLTK--EDRRIINEAIEYLHLE-----DLSDRYLDELSGGQRQRA-----FIAMV 149
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL------ 391
LA + +DE LD + QI+ L++ T V+ L +D+
Sbjct: 150 LAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-------HDINFASCY 202
Query: 392 FDDIILLSDGQIVYQGPRELVLE 414
D I+ L +G++V QG + +++
Sbjct: 203 SDHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 20/190 (10%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
+N +S G + L+G +GAGKTT ++ G R G I + I+ P + A
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR--A 77
Query: 932 RIS-GYCEQNDIHSPF--VTVYESLLYSAWLRLPPEVDSET--RKMFIEEVMELVELKPL 986
R+ GY Q S F +TV ++++ +R E D + RK ++ ++E + L
Sbjct: 78 RLGIGYLPQE--ASIFRKLTVEDNIMAVLEIR---EKDLKKAERKEELDALLEEFHITHL 132
Query: 987 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
S S LS +R+R+ IA L ANP I +DEP +G+D A + R +++ D
Sbjct: 133 RDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD 187
Query: 1047 TGRTVVCTIH 1056
G V+ T H
Sbjct: 188 RGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 51/247 (20%), Positives = 95/247 (38%), Gaps = 46/247 (18%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
HL + D++ + G + +LGP +GK+TLL +AG SG + NG D
Sbjct: 12 GHLPMRFDLT--VPAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTAS 66
Query: 223 VP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
P ER + + Q +N +TV + + G+ P
Sbjct: 67 PPAERPVSMLFQENNLFAHLTVAQNIGL------------------------GLSPG--- 99
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
+K A + ++ +GL + +SGG+R+RV +V
Sbjct: 100 ---LKLNAEQREKVEAA----AAQVGLAGF-----LKRLPGELSGGQRQRVALARCLVRE 147
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE + LD + +++ + Q + ++ + + + D ++ L +G
Sbjct: 148 QPILLLDEPFSALDPALRAEMLALVSQ-LCDERKMTLLMVTHHPEDAARIADRVVFLDNG 206
Query: 402 QIVYQGP 408
+I QG
Sbjct: 207 RIAAQGS 213
|
Length = 231 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 31/201 (15%)
Query: 871 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY------P 924
K+ L +S + G + ++G SGAGK+TL+ ++G + +G++ + G
Sbjct: 17 KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSG 74
Query: 925 KKQETFARISGYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 982
K+ R G Q N + S TV+E++ P E+ + E V+EL+E
Sbjct: 75 KELRKARRRIGMIFQHFNLLSSR--TVFENVAL------PLEIAGVPKAEIEERVLELLE 126
Query: 983 LKPLIQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
L VGL + LS Q++R+ IA L NP ++ DE TS LD +
Sbjct: 127 L-------VGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSI 179
Query: 1038 MRTVRNT-VDTGRTVVCTIHQ 1057
+ +R+ + G T+V H+
Sbjct: 180 LALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 19/164 (11%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-ITGNITISG-----YPKKQ 927
LL ++ G + LMG SG GK+TL+ + G G + TG + ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 987
R G Q+ + P ++V ++LL++ LP + R+ +E L
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
P + LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQD---P--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 2e-10
Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 32/220 (14%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ- 927
D +L+ L+ +PG ++G SG+GK+TL +L T + G + + G
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAIA 524
Query: 928 --ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVME------ 979
R G V + E++L+S +R + E V+
Sbjct: 525 DPAWLRRQMG-----------VVLQENVLFSRSIR--DNIALCNPGAPFEHVIHAAKLAG 571
Query: 980 ----LVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
+ EL + VG G LS QR+R+ IA LV NP I+ DE TS LD + A
Sbjct: 572 AHDFISELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEA 630
Query: 1036 IVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
++MR +R + GRTV+ H+ + A D + ++++G
Sbjct: 631 LIMRNMR-EICRGRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 11/164 (6%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-E 928
V L+G+S + G L+G SG GKTTL+ +++G +T +G I + G
Sbjct: 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLP 68
Query: 929 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 988
R QN P +TV+E++ + LRL ++ K + E ++LV+L+
Sbjct: 69 PHKRPVNTVFQNYALFPHLTVFENIAFG--LRLK-KLPKAEIKERVAEALDLVQLEGYAN 125
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
S LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 126 RKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-10
Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 41/194 (21%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-- 225
L+ VS + PG L+GP +GK+TLL L G +D + G + NG + + +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
A++ QH + T+ E + LAR +
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIR-----------------LARPD-------------- 422
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
A E +EA V L DT +G+ G+SGG+ +R+ + A
Sbjct: 423 --ASDAEIREALERAGLDEFVAALPQGLDTPIGEGG-AGLSGGQAQRLALARAFLRDAPL 479
Query: 345 LFMDEISTGLDSST 358
L +DE + LD+ T
Sbjct: 480 LLLDEPTAHLDAET 493
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+ +S + G +L GP SGKTTLL +AG L +G + +G D+ +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGGDIDDPDVA 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQG 255
Y+ + +TV E L F A G
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLG 102
|
Length = 207 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-10
Identities = 73/287 (25%), Positives = 105/287 (36%), Gaps = 88/287 (30%)
Query: 156 GILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYN 215
G+ + + + DVS ++ G L+G SGK+TL LAG L S SG + ++
Sbjct: 295 GLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFD 351
Query: 216 GHDM----GEFVP-ERTAAYISQH-----DNHIGEMTVRETLAFSARCQGVGSRYELLTE 265
G D+ GE R + Q + MTV + LA R G GS E
Sbjct: 352 GQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR---MTVGDILAEPLRIHGGGSGAE---- 404
Query: 266 LARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325
RR + ++ V D +S
Sbjct: 405 --RRAR---------VAELLE----------------------LVGLPPEFLDRYPHELS 431
Query: 326 GGERKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS 380
GG+R+RV + ALA L +DE + LD S Q++N LK
Sbjct: 432 GGQRQRVA-----IARALALEPKLLILDEPVSALDVSVQAQVLNLLKD------------ 474
Query: 381 LLQPAPETYDLF------------DDIILLSDGQIVYQGPRELVLEF 415
L + TY LF D + ++ DG+IV +GP E V E
Sbjct: 475 LQEELGLTY-LFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 19/173 (10%)
Query: 865 QGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924
QG E +L +L G+ + G AL+G SG+GK+TL+ +L+G G +G +++ G P
Sbjct: 18 QG--EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQP 73
Query: 925 -------KKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEV 977
+ + A+ G+ Q+ + P + E++ A LR E ++R
Sbjct: 74 LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSR----NGA 127
Query: 978 MELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
L+E L + L LP + LS +++R+ +A P ++F DEPT LD
Sbjct: 128 KALLEQLGLGKRLDHLP--AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 63/228 (27%), Positives = 92/228 (40%), Gaps = 57/228 (25%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVL-------SGRKTGGYITGNITISGYPKK 926
+N L+ G L+G SG+GKTT M ++ SG I I G +
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGE---------IFIDGEDIR 66
Query: 927 QET---FARISGYCEQNDIHSPFVTVYE------SLLYSAWLRLPPEVDSETRKMFIEEV 977
++ R GY Q P +TV E LL W + E + +E+
Sbjct: 67 EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPK-------EKIRERADEL 117
Query: 978 MELVELKPLIQSLVG-LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
+ LV L P P LS Q++R+ +A L A+P ++ MDEP LD
Sbjct: 118 LALVGLDP--AEFADRYP--HELSGGQQQRVGVARALAADPPLLLMDEPFGALDP----- 168
Query: 1037 VMRT------VRNTVDTGRTVVCTIHQPGIDIFDAF---DELFLMKRG 1075
+ R R + G+T+V H DI +AF D + +MK G
Sbjct: 169 ITRDQLQEEFKRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 3e-10
Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 13/206 (6%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 931
+L GL+ F +T L+G +G GK+TL LSG R G + Y K+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 932 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
R Q+ F T +S + + L TR+ ++E + LV+ +
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR--VDEALTLVDAQHFRHQ- 132
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G
Sbjct: 133 ----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNH 188
Query: 1051 VVCTIHQPGID-IFDAFDELFLMKRG 1075
V+ + H ID I++ D ++++++G
Sbjct: 189 VIISSHD--IDLIYEISDAVYVLRQG 212
|
Length = 271 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 64/252 (25%), Positives = 98/252 (38%), Gaps = 56/252 (22%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-- 225
++ VS ++ G + LLGP +GKTT + L L + SGR T GHD+ V E
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDV---VREPR 69
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
R + Q + E+T E L AR GV E R +E
Sbjct: 70 EVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-----ERRERIDEL--------- 115
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
L +GL D +++ SGG R+R+ +V
Sbjct: 116 --------------------LDFVGL-----LEAADRLVKTYSGGMRRRLEIARSLVHRP 150
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL--QPAPETYDLFDDIILLSD 400
LF+DE + GLD T + +++ + + LL E L D + ++
Sbjct: 151 EVLFLDEPTIGLDPQTRAHVWEYIEK---LKEEFGMTILLTTHYMEEAEQLCDRVAIIDH 207
Query: 401 GQIVYQG-PREL 411
G+I+ +G P EL
Sbjct: 208 GRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-10
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 890 LMGVSGAGKTTLMDVLSG--RKTGG--YITGNITISGYPKKQETFARISGYCEQNDIHSP 945
L+G SG GKTT + +++G T G YI G PK R QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD-----RDIAMVFQNYALYP 85
Query: 946 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 1005
+TVY+++ + LR P+ + + R + EV EL++++ L+ LS QR+
Sbjct: 86 HMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHLLDRKP-----KQLSGGQRQ 137
Query: 1006 RLTIAVELVANPSIIFMDEPTSGLDAR 1032
R+ + +V P + MDEP S LDA+
Sbjct: 138 RVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 6e-10
Identities = 58/271 (21%), Positives = 107/271 (39%), Gaps = 53/271 (19%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
T+L D+S I+ G + L+G GKTTLL A+AG + ++ ++GR+ D+ P
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPH 77
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+R A + Q+ + V + +AF R Q + ++A R +A
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK-----ADIAERVADA----------- 121
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
LK++GL + +SGG ++R+ +
Sbjct: 122 ------------------LKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQ-HVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE + LD++ + + H + T ++ + + L D ++ DG++
Sbjct: 159 LLLDEPLSALDANIRANMREEIAALHEELPELT-ILCVTHDQDDALTLADKAGIMKDGRL 217
Query: 404 VYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
G P+ L + P A+FL
Sbjct: 218 AAHGEPQAL---------YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 6e-10
Identities = 80/325 (24%), Positives = 123/325 (37%), Gaps = 71/325 (21%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMGEFV 223
++ ++ I G LLGP GKTT+L +AG D SGR+ +G D+
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-----SGRIMLDGQDITHVP 82
Query: 224 PE-RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
E R + Q MTV E +AF R Q + E+ R EA
Sbjct: 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA-----EITPRVMEA--------- 128
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
L+++ LE A +SGG+++RV +V
Sbjct: 129 --------------------LRMVQLEEFA-----QRKPHQLSGGQQQRVAIARAVVNKP 163
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + LD Q+ N LK + G + + E + D I+++ DG+
Sbjct: 164 KVLLLDESLSALDYKLRKQMQNELKA-LQRKLGITFVFVTHDQEEALTMSDRIVVMRDGR 222
Query: 403 IVYQG-PRELVLEFFESMGFKCPKRKGVADFLQE-------VTSRKDQKQYWTHKEKPYR 454
I G PRE+ ++ PK VA F+ E V R D+++ + E
Sbjct: 223 IEQDGTPREI---------YEEPKNLFVARFIGEINIFDATVIERLDEQRVRANVEGREC 273
Query: 455 FVTVEEFAEAFQSFHVGQKISDELR 479
+ V + GQK+ LR
Sbjct: 274 NIYVN------FAVEPGQKLHVLLR 292
|
Length = 375 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 7e-10
Identities = 73/292 (25%), Positives = 111/292 (38%), Gaps = 73/292 (25%)
Query: 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG 220
+T L DVS I G + ++G +GK+TLL + L+ SG V +G D+
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL-LERP--TSGSVFVDGQDLT 71
Query: 221 EFVPE------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
+ I QH N + TV E +AF GV E+ +R E
Sbjct: 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPK-----AEIKQRVAEL- 125
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
L+++GL AD +SGG+++RV
Sbjct: 126 ----------------------------LELVGLSDKADR-----YPAQLSGGQKQRVA- 151
Query: 335 GEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINS--GTAVISLLQPAPE 387
+ ALA L DE ++ LD TT I+ LK IN G ++ L+ E
Sbjct: 152 ----IARALANNPKILLCDEATSALDPETTQSILELLKD---INRELGLTIV-LITHEME 203
Query: 388 -TYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTS 438
+ D + +L G++V +G V E F + PK +F+ E
Sbjct: 204 VVKRICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGETLE 247
|
Length = 339 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 7e-10
Identities = 67/237 (28%), Positives = 101/237 (42%), Gaps = 54/237 (22%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGY-- 923
+LNG+S G A++G SGAGK+T++ DV SG ITI G
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS---------ITIDGQDI 327
Query: 924 -PKKQETFARISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEV 977
Q++ R G Q ND T+ ++ Y P+ +E +
Sbjct: 328 RDVTQQSLRRAIGIVPQDTVLFND------TIAYNIKYGR-----PDATAEE----VGAA 372
Query: 978 MELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
E ++ IQSL VG G+ LS +++R+ IA ++ NP I+ +DE TS LD
Sbjct: 373 AEAAQIHDFIQSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALD 431
Query: 1031 ARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRH 1087
+ +R V GRT + H+ I DA DE+ ++ G + G H
Sbjct: 432 THTEQAIQAALRE-VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG----RIVERGTH 481
|
Length = 497 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 8e-10
Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 55/264 (20%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
LT + DVS ++PG + L+GP +GKTTL + G S SG V + G D+ P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 225 ERTAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
R A I+ Q +TV E +A A + G L AR+E
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARL-GLSGLLGRPRARKE---------- 122
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE---- 336
+ +E L+ +GL AD G+ +S G+++R+ E
Sbjct: 123 ----EREARERAREL-------LEFVGLGELADRPAGN-----LSYGQQRRL---EIARA 163
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV------ISLLQPAPETYD 390
+ P L L +DE + GL+ T ++ +++ + G + + L+
Sbjct: 164 LATQPKL-LLLDEPAAGLNPEETEELAELIRE-LRDRGGVTILLIEHDMKLV------MG 215
Query: 391 LFDDIILLSDGQIVYQGPRELVLE 414
L D I++L+ G+++ +G E V
Sbjct: 216 LADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 8e-10
Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 31/222 (13%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
++ ++ G L+G SG+GKTT + +++ T G I IS
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD---PVEL 73
Query: 932 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPE---VDSETRKMFIEEVMELVELKPLI 987
R GY Q P +TV E++ P+ D E K +E+++LV L P
Sbjct: 74 RRKIGYVIQQIGLFPHLTVAENIA------TVPKLLGWDKERIKKRADELLDLVGLDP-S 126
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRNT 1044
+ P LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 127 EYADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE 184
Query: 1045 VDTGRTVVCTIHQPGIDIFDAF---DELFLMKRGGQEIYVGP 1083
G+T+V H DI +A D + +M G Y P
Sbjct: 185 --LGKTIVFVTH----DIDEALKLADRIAVMDAGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 8e-10
Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 53/184 (28%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISG---YP 924
L ++ +TAL+G SG GK+TL+ D++ G + + G + + G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNIYD 78
Query: 925 KKQETFA---RISGYCEQ--NDIHSPFV-TVYESLLYSAWLRLPPEVDSETRKMFIEEVM 978
K + R+ G Q N PF ++Y+++ Y LRL D E +
Sbjct: 79 PKVDVVELRRRV-GMVFQKPN----PFPMSIYDNVAYG--LRLHGIKDKE--------LD 123
Query: 979 ELVELKPLIQSL--VGL----------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1026
E+VE SL L + GLS Q++RL IA L P ++ MDEPT
Sbjct: 124 EIVE-----SSLKKAALWDEVKDRLHKSAL-GLSGGQQQRLCIARALAVKPEVLLMDEPT 177
Query: 1027 SGLD 1030
S LD
Sbjct: 178 SALD 181
|
Length = 253 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 9e-10
Identities = 62/248 (25%), Positives = 99/248 (39%), Gaps = 62/248 (25%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
L ++ I G L+GP +GK+TLL + + L SG + NG D+ + R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDL-RGRA 72
Query: 228 AAYISQH------DNH-IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
Y+ + D + + V E +AF+ GV R E+ +R A
Sbjct: 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA------- 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
L+++GL + +SGGE++RV +V
Sbjct: 121 ----------------------LELVGLSHKHRALPA-----ELSGGEQQRVAIARAIVN 153
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHIN-SGTAVISLLQPAPETYDLFDD----I 395
L DE + LD TT++I+N LK+ IN +GT V+ A +L D +
Sbjct: 154 SPTILIADEPTGNLDPDTTWEIMNLLKK---INKAGTTVVV----ATHAKELVDTTRHRV 206
Query: 396 ILLSDGQI 403
I L G++
Sbjct: 207 IALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 57/246 (23%), Positives = 101/246 (41%), Gaps = 49/246 (19%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+L+DVS +KPG ++GP +GK+TLL A+ G L + SG + G + +
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKER-- 67
Query: 226 RTAAYISQHDNHIGEM--TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
+ Y+ Q + + +VR+ + G+ L L++ +
Sbjct: 68 KRIGYVPQRRSIDRDFPISVRDVVLM-----GLYGHKGLFRRLSKAD------------- 109
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
KA E L+ +GL + + D I +SGG+++RV +V
Sbjct: 110 --KAKVDEA----------LERVGL-----SELADRQIGELSGGQQQRVLLARALVQDPD 152
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL--LQPAPETYDLFDDIILLSDG 401
L +DE G+D T I L++ + T ++ L + FD ++LL +
Sbjct: 153 LLLLDEPFAGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVL---EYFDRVLLL-NR 207
Query: 402 QIVYQG 407
+V G
Sbjct: 208 TVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 24/207 (11%)
Query: 863 KLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG 922
K G E +L +L G+ + G A++G SG+GK+TL+ VL+G +G + + G
Sbjct: 14 KTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLG 71
Query: 923 YP---KKQETFARIS----GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIE 975
P ++ A + G+ Q+ P +T E++ LP E+ E+
Sbjct: 72 QPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVA------LPLELRGESSADSRA 125
Query: 976 EVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----A 1031
L+E L + L P LS +++R+ +A P ++F DEPT LD
Sbjct: 126 GAKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183
Query: 1032 RAAAIVMRTVRNTVDTGRTVVCTIHQP 1058
+ A ++ R + G T+V H P
Sbjct: 184 KIADLLFALNR---ERGTTLVLVTHDP 207
|
Length = 228 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 63/257 (24%), Positives = 91/257 (35%), Gaps = 56/257 (21%)
Query: 183 LLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEM 241
LLGP GKTTLL LAG SG + +G D+ P R + Q M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDY 301
TV E +AF + + V E+ R EA
Sbjct: 58 TVEENVAFGLKMRKVPR-----AEIKPRVLEA---------------------------- 84
Query: 302 YLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV-GPALALFMDEISTGLDSSTTF 360
L + D +SGG+++RV +V P + L +DE + LD
Sbjct: 85 ------LRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKI-LLLDEPLSALDKKLRD 137
Query: 361 QIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFESM 419
Q+ LK + G + + E + D I ++ G+I G P E+ E
Sbjct: 138 QMQLELKT-IQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE----- 191
Query: 420 GFKCPKRKGVADFLQEV 436
P VA F+ E+
Sbjct: 192 ----PANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-09
Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 872 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQET 929
+V + +S + + G + AL+G +GAGK+TLM +L G + G I + G
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSG----EIRVDGKE----- 67
Query: 930 FARISGYCEQND--------IHSPFV-----TVYESLLYSAWLRLPPEVD-SETRKMFIE 975
RI D +H F+ TV E+++ +D + R I+
Sbjct: 68 -VRIKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-IK 122
Query: 976 EVMEL----VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
E+ E V+ V+ LS +++R+ I L ++ +DEPT+ L
Sbjct: 123 ELSERYGLPVDPDAK---------VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTP 173
Query: 1032 RAAAIVMRTVRNTVDTGRTVV 1052
+ A + +R G+T++
Sbjct: 174 QEADELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-09
Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 25/160 (15%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG--YPKKQETFARISG----Y 936
PG + AL+G +GAGK+TLM VLSG G ITI+ Y K A G Y
Sbjct: 29 YPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINYNKLDHKLAAQLGIGIIY 86
Query: 937 CEQNDIHSPFVTVYESLLYSAWLRLP-------PEVDSETRKMFIEEVMELVELKPLIQS 989
E + I +TV E+L R +D ++ ++ V LK +
Sbjct: 87 QELSVIDE--LTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDE 141
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
V LS ++ L IA L+ + +I MDEPTS L
Sbjct: 142 KVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
Length = 510 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 1e-09
Identities = 57/256 (22%), Positives = 105/256 (41%), Gaps = 56/256 (21%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-- 225
L +S +I+PG L+G SGK+TL+ + + SG++ +GHD+ ++
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASL 404
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
R A +SQ D + T+ +A+ Q + E
Sbjct: 405 RRQVALVSQ-DVVLFNDTIANNIAYGRTEQADRAEIE----------------------- 440
Query: 285 MKAIATEGQEANVITDYYLK--VLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ Y + V L + DT +G+ + +SGG+R+R+ ++ A
Sbjct: 441 -----------RALAAAYAQDFVDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDA 488
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI----SLLQPAPETYDLFDDIILL 398
L +DE ++ LD+ + + L + + T VI S ++ A D I+++
Sbjct: 489 PILILDEATSALDNESERLVQAAL-ERLMQGRTTLVIAHRLSTIEKA-------DRIVVM 540
Query: 399 SDGQIVYQGPRELVLE 414
DG+IV +G +L
Sbjct: 541 DDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 34/159 (21%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLSG--RKTGGYI----------TGNITISGYPKKQETFA 931
G+ TAL G SG+GKT+L+++++G R G I I + P ++
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFL---PPEKR--- 76
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 991
RI GY Q+ P TV +L Y W ++ + ++++ L+ ++ L L
Sbjct: 77 RI-GYVFQDARLFPHYTVRGNLRYGMW---------KSMRAQFDQLVALLGIEHL---LD 123
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
PG LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 124 RYPGT--LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 48/198 (24%), Positives = 72/198 (36%), Gaps = 49/198 (24%)
Query: 160 SRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM 219
S KK IL D+S + G + L G +GKTTL LAG + S SG + NG +
Sbjct: 8 SYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPI 64
Query: 220 GEFVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
++ Y+ Q D + +VRE L +
Sbjct: 65 KAKERRKSIGYVMQDVDYQLFTDSVREELLLGLK-------------------------- 98
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG-EM 337
E N + LK L L + +SGG+++R+ +
Sbjct: 99 ------------ELDAGNEQAETVLKDLDLYALKE-----RHPLSLSGGQKQRLAIAAAL 141
Query: 338 MVGPALALFMDEISTGLD 355
+ G L L DE ++GLD
Sbjct: 142 LSGKDL-LIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-09
Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 32/222 (14%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTT----LMDVLS--GRKTGGYIT-GNITISGYPK 925
+ +S PG + ++G SG+GK+T LM +L GR T G + + G +
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 926 KQET--FARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV 981
++ + Q+ + S P +T+ + + + L +R + +EL+
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH-----GKGSRAEARKRAVELL 137
Query: 982 ELKPLIQSLVGLPGVSG-------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
E VGLP LS R+R+ IA+ L P ++ DEPT+ LD
Sbjct: 138 EQ-------VGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQ 190
Query: 1035 AIVMRTVRN-TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
A ++ +++ + G V+ H G+ + + D + +M +G
Sbjct: 191 AQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 49/241 (20%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
L+DVS I G + ++LGP GKTTLL +AG + S G + NG + ER
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAER 76
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
+ Q++ + + V + +AF + +G+ RRE
Sbjct: 77 --GVVFQNEALLPWLNVIDNVAFGLQLRGIEKA-------QRRE---------------- 111
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE-MMVGPALAL 345
I L ++GLE + I +SGG R+RV + V P L L
Sbjct: 112 -----------IAHQMLALVGLE---GA--EHKYIWQLSGGMRQRVGIARALAVEPQL-L 154
Query: 346 FMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS--DGQI 403
+DE LD+ T Q+ L + +G V+ + E L +++LS G++
Sbjct: 155 LLDEPFGALDALTREQMQELLLD-LWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRV 213
Query: 404 V 404
V
Sbjct: 214 V 214
|
Length = 259 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-09
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 15/146 (10%)
Query: 890 LMGVSGAGKTTLMDVLSGRKT---GGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 946
L+G SG GKTTL+ +L+G + G + ++ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 947 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 1006
+TV E++ + +R +V K + E + LV+L+ LS Q++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQR 108
Query: 1007 LTIAVELVANPSIIFMDEPTSGLDAR 1032
+ +A LV P I+ +DEP S LD +
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKK 134
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-09
Identities = 67/258 (25%), Positives = 108/258 (41%), Gaps = 32/258 (12%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP----KKQET 929
+L+G+ + R G L L+G +GAGKTTL+ ++G T G + ++G +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 930 FARISGYCEQNDIHSPFV--TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 987
R++ + + F V E R +++ +E ME +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTG----V 129
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
P V+ LS +R+R+ +A L ++ +DEPT+ LD + VR VD
Sbjct: 130 AQFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 1048 GRTVVCTIHQPGIDIFDAF-DELFLMKRGGQEIYVGPLGRHSCQLIS-----YFEAIPGV 1101
G+T V IH +D+ + DEL L+ G V G + L + F+A V
Sbjct: 189 GKTAVAAIHD--LDLAARYCDELVLLADGR----VRAAGPPADVLTADTLRAAFDARTAV 242
Query: 1102 EKIKDGYNPATWMLEVTA 1119
G +PAT VT
Sbjct: 243 -----GTDPATGAPTVTP 255
|
Length = 402 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-09
Identities = 56/211 (26%), Positives = 105/211 (49%), Gaps = 23/211 (10%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI--TGNITISGYPKKQ--- 927
L L+ G AL+G SGAGKT+L++ L G ++ G++ I+G ++
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDP 418
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE--VMELVELKP 985
E++ + + QN P T+ +++L P+ E + +E V E + L P
Sbjct: 419 ESWRKHLSWVGQNP-QLPHGTLRDNVLLGN-----PDASDEQLQQALENAWVSEFLPLLP 472
Query: 986 L-IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
+ + +G +GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+ + N
Sbjct: 473 QGLDTPIG-DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL-NA 530
Query: 1045 VDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
+T + HQ ++ +D++++M+ G
Sbjct: 531 ASRRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 62/221 (28%), Positives = 88/221 (39%), Gaps = 54/221 (24%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
L DVS I+ G L GP +GKTTLL L G L S G+V G D+ + R
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDV-NRLRGR 72
Query: 227 TAAYISQH------DNHI-GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ + D + + TV E +A +G R E+ RR A
Sbjct: 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER-----EIQRRVGAA------ 121
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
L+ +GLE AD +SGGE++RV +V
Sbjct: 122 -----------------------LRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIV 153
Query: 340 G-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
P L L DE + LD + +I++ LK+ ++ GT VI
Sbjct: 154 NSPPL-LLADEPTGNLDPDLSERILDLLKR-LNK-RGTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-09
Identities = 55/219 (25%), Positives = 82/219 (37%), Gaps = 55/219 (25%)
Query: 158 LPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH 217
+ + L+ILK V ++K G ++GP SGK+TLL LAG D S SG V G
Sbjct: 16 VGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQ 72
Query: 218 DMGEFVPERTAAYISQHDNH-------IGEMTVRETLAFSARCQGVGSRYELLTELARRE 270
+ + + AA ++H I +T E +A +G S
Sbjct: 73 PLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSA----------- 121
Query: 271 NEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI---RGISGG 327
+A A L+ +GL G + +SGG
Sbjct: 122 -------------DSRAGAKA----------LLEAVGL--------GKRLTHYPAQLSGG 150
Query: 328 ERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 366
E++RV G LF DE + LD +T +I + L
Sbjct: 151 EQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 3e-09
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 16/200 (8%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYI-TGNITISGYPKKQET--FARISGYC 937
+ G TAL+G +G+GK+TL+ L+G + T G + G+I +S K++E + G
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 938 EQNDIHSPFVTVYESLLYSAWLRLPPE--VDSETRKMFIEEVMELVELKPLIQSLVGLPG 995
Q P ++E + P + E + E +E+V L
Sbjct: 90 FQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFE- 144
Query: 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1055
LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ + +G+TVV
Sbjct: 145 ---LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201
Query: 1056 HQPGIDIFDAFDELFLMKRG 1075
H D+ D D ++L+++G
Sbjct: 202 HLMD-DVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 3e-09
Identities = 42/116 (36%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF- 222
+L D+S I G+M LLGP SGKTTLL +AG L+ + SG + ++G D+
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEH--QTSGHIRFHGTDVSRLH 70
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRE--NEAGIK 276
+R ++ QH MTV + +AF LT L RRE N A IK
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRERPNAAAIK 114
|
Length = 353 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 47/216 (21%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 933
+L G++ + G + ALMG +G+GK+TL + G G I G
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------- 63
Query: 934 SGYCEQNDIHSPFVTVYESL---LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
DI + E ++ A+ PPE+ F+ V E
Sbjct: 64 ------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE----------- 103
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
G S ++KR I L+ P + +DEP SGLD A +V + + G++
Sbjct: 104 -------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 1051 VVCTIHQPGIDIFDAFDELFLM------KRGGQEIY 1080
V+ H + + D + ++ K G +E+
Sbjct: 157 VLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELA 192
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 18/191 (9%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 927
D L +GLS G + G +G+GKTTL+ +L+G G + N ++
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG--PLDFQR 68
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 987
++ AR Y ++V E+L + + E +EE + V L
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENL---RFWH--ADHSDEQ----VEEALARVGLNGFE 119
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
V LS Q++R+ +A L++ + +DEPT+ LD A +
Sbjct: 120 DRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174
Query: 1048 GRTVVCTIHQP 1058
G VV T HQ
Sbjct: 175 GGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 4e-09
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+L D+S I+ G + +LGP +GK+TLL LAG L S SG + +G D+ P+
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPK 69
Query: 226 ---RTAAYISQ 233
R AY+ Q
Sbjct: 70 ELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 4e-09
Identities = 62/254 (24%), Positives = 103/254 (40%), Gaps = 49/254 (19%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
LK+ + + G +LG SGK+TLL LAG D G +T NG ++
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEI------ 402
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
+ E +RET++ + + S L R+N PD D +
Sbjct: 403 ----------ASLDEQALRETISVLTQRVHLFS-----GTL--RDNLRLANPDAS-DEEL 444
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALAL 345
A + ++ +T +G E R +SGGER+R+ ++ A
Sbjct: 445 WAALQQVGLEKLLES-------APDGLNTWLG-EGGRRLSGGERRRLALARALLHDAPLW 496
Query: 346 FMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-----FDDIILLSD 400
+DE + GLD T Q++ L +H G ++ + T+ L D II+L +
Sbjct: 497 LLDEPTEGLDPITERQVLALLFEHA---EGKTLLMV------THRLRGLERMDRIIVLDN 547
Query: 401 GQIVYQGPRELVLE 414
G+I+ +G +L
Sbjct: 548 GKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 4e-09
Identities = 51/212 (24%), Positives = 87/212 (41%), Gaps = 40/212 (18%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISG---YPKKQ 927
++G+S + G + ++G SG+GK+ L + G K I G I G +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 928 ETFARISG----YCEQNDIHS--PFVTV----YESLLYSAWLRLPPEVDSETRKMFIEEV 977
+ +I G Q+ + S P +T+ E L ++K E
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG--------LSKKEAKERA 131
Query: 978 MELVELKPLIQSLVGLPGVSG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
+EL+EL VG+P LS R+R+ IA+ L NP ++ DEPT+ L
Sbjct: 132 IELLEL-------VGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184
Query: 1030 DARAAAIVMRTVRNTV-DTGRTVVCTIHQPGI 1060
D A ++ ++ + G ++ H G+
Sbjct: 185 DVTVQAQILDLLKELQREKGTALILITHDLGV 216
|
Length = 316 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-09
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 29/188 (15%)
Query: 867 VLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR--KTGGYIT---GNITIS 921
+ LNGLS G ++G +GAGK+TL++ ++G T G I ++T
Sbjct: 14 GTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKK 73
Query: 922 GYPKKQETFARI-----SGYCEQNDIHSPFVTVYESLLYSAWLR-----LPPEVDSETRK 971
K+ AR+ +G P +T+ E+L A R L ++ R
Sbjct: 74 SVAKRANLLARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALNERRRS 125
Query: 972 MFIEEVMELVE-LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
F E + L L+ + +GL LS QR+ L++ + + P I+ +DE T+ LD
Sbjct: 126 SFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
Query: 1031 ARAAAIVM 1038
+ A VM
Sbjct: 181 PKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 5e-09
Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 49/252 (19%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV--SGRVTYNGHDMGEFVP 224
IL ++S IKPG + ++G SGK+TL KL V +GRV +GHD+ P
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRFYVPENGRVLVDGHDLALADP 71
Query: 225 E---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
R + Q +N + ++R+ +A + DP +
Sbjct: 72 AWLRRQVGVVLQ-ENVLFNRSIRDNIALA---------------------------DPGM 103
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
+ EA + + + L DT+VG++ G+SGG+R+R+ ++
Sbjct: 104 SME------RVIEAAKLAGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHN 156
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L DE ++ LD + I+ + I +G VI ++ T D II++ G
Sbjct: 157 PRILIFDEATSALDYESEHAIMRNMHD---ICAGRTVI-IIAHRLSTVKNADRIIVMEKG 212
Query: 402 QIVYQGPRELVL 413
+IV QG + +L
Sbjct: 213 RIVEQGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 5e-09
Identities = 46/215 (21%), Positives = 94/215 (43%), Gaps = 44/215 (20%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 931
L ++ G L A++G G+GK++L+ L G K G ++ +I+
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA---------- 69
Query: 932 RISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 988
Y Q P++ T+ E++L+ D E E+V++ L+P ++
Sbjct: 70 ----YVSQ----EPWIQNGTIRENILFGK------PFDEE----RYEKVIKACALEPDLE 111
Query: 989 SL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVMRT 1040
L +G G++ LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 112 ILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 1041 VRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
+ + +T + HQ + + D++ ++ G
Sbjct: 171 ILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 5e-09
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK-- 926
D ++L+ +S PG A++G SG+GK+TL+ +L G +T +G++ G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGL 520
Query: 927 -QETFARISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 984
+ R G QN + S +++E++ A L L +E E +
Sbjct: 521 DVQAVRRQLGVVLQNGRLMSG--SIFENIAGGAPLTL-------------DEAWEAARMA 565
Query: 985 PLIQSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
L + + +P G LS QR+RL IA LV P I+ DE TS LD R A
Sbjct: 566 GLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625
Query: 1036 IVM 1038
IV
Sbjct: 626 IVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 6e-09
Identities = 54/251 (21%), Positives = 101/251 (40%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL D+S + G++T L+GP GK+TLL A L SG V +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSSR 72
Query: 226 RTAAYIS---QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+ A ++ QH +TVRE +A+ G P
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAY------------------------GRSP----- 103
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
++ E N + ++ + AD + D +SGG+R+R ++
Sbjct: 104 -WLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDT 157
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ +DE +T LD + +++ +++ G V+++L + D +++L++G
Sbjct: 158 PVVLLDEPTTYLDINHQVELMRLMRELN--TQGKTVVTVLHDLNQASRYCDHLVVLANGH 215
Query: 403 IVYQGPRELVL 413
++ QG E V+
Sbjct: 216 VMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 6e-09
Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISG---YPKKQE 928
L G+ F +TAL+G SG GK+T + L+ G ITGN+++ G Y ++
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 929 T--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 986
+ G Q PF ++YE+++Y LRL D +E ++ +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPF-SIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAAIWDE 137
Query: 987 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
++ + +S LS Q++R+ IA L P +I +DEPTS LD
Sbjct: 138 VKDHLHESALS-LSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 7e-09
Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 20/197 (10%)
Query: 871 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ 927
+L G+ + G + ++G SG+GK+TL+ ++ G I + ++ K
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 987
+ G Q P +TV E++ + P +V ++ E +EL+E
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLA-----PIKVKGMSKAEAEERALELLEK---- 122
Query: 988 QSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
VGL + LS Q++R+ IA L NP ++ DEPTS LD V+ ++
Sbjct: 123 ---VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK 179
Query: 1043 NTVDTGRTVVCTIHQPG 1059
+ + G T+V H+ G
Sbjct: 180 DLAEEGMTMVVVTHEMG 196
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 8e-09
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 31/182 (17%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR 932
LL +S PG L+G +GAGK+TL+ +L+G +G +T R
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-------LR 67
Query: 933 ISGYCEQNDIHSPFVTVYESLL--YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
+ GY Q P TV + ++ + L E++ + + L EL+ L++ L
Sbjct: 68 V-GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 991 ---------------VGLPG----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
+G P VS LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 1032 RA 1033
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 9e-09
Identities = 61/201 (30%), Positives = 93/201 (46%), Gaps = 31/201 (15%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 927
D LVL +S PG +TAL+G SG+GK+T++ +L + GG + + G P
Sbjct: 26 DTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG----QVLLDGKP--- 77
Query: 928 ETFARISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEVDSETRKMFIEEVMELV----- 981
IS Y E +HS V E +L++ L+ ++ E V E
Sbjct: 78 -----ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF--ECVKEAAQKAHA 129
Query: 982 -----ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
EL + VG G S LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 130 HSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 1037 VMRTVRNTVDTGRTVVCTIHQ 1057
V + + + RTV+ H+
Sbjct: 189 VQQALYDW-PERRTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 48/217 (22%), Positives = 88/217 (40%), Gaps = 46/217 (21%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE 928
EDK +L G++ + G + A+MG +G+GK+TL ++G + +G I G Q+
Sbjct: 11 EDKEIL-KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QD 65
Query: 929 TFARISGYCEQNDIHSPFVTVYESL---LYSAWLRLPPEVDSETRKMFI----------- 974
+ E L+ A+ + P E+ + F+
Sbjct: 66 LLE---------------LEPDERARAGLFLAF-QYPEEIPGVSNLEFLRSALNARRSAR 109
Query: 975 -EEVMELVELKPLIQSLVGLPGVS----------GLSTEQRKRLTIAVELVANPSIIFMD 1023
EE ++L++ L+++ + L G+ G S ++KR I + P + +D
Sbjct: 110 GEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILD 169
Query: 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1060
E SGLD A IV + + R+ + H +
Sbjct: 170 EIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 54/246 (21%), Positives = 95/246 (38%), Gaps = 53/246 (21%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T L D+S ++ G + LLGP +GKTT + + G + SG V ++G +
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLD-IAAR 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
Y+ + +M V + L + A+ +G+ ARR
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE------ARRR--------------- 108
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT-TGEMMVGPALA 344
D +L+ L L A ++ + +S G +++V ++ P L
Sbjct: 109 -------------IDEWLERLELSEYA-----NKRVEELSKGNQQKVQFIAAVIHDPEL- 149
Query: 345 LFMDEISTGLDSSTT---FQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE +GLD ++ L + +G VI +L D ++LL+ G
Sbjct: 150 LILDEPFSGLDPVNVELLKDVIRELAR-----AGKTVILSTHQMELVEELCDRVLLLNKG 204
Query: 402 QIVYQG 407
+ V G
Sbjct: 205 RAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 46/186 (24%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISG---YP 924
L ++ +TAL+G SG GK+TL+ D++ G + I G + G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDGQDIYD 72
Query: 925 KKQETFA---RISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL 980
KK + R+ G Q +PF +++Y+++ Y P + K ++E++E
Sbjct: 73 KKIDVVELRRRV-GMVFQKP--NPFPMSIYDNIAYG------PRLHGIKDKKELDEIVE- 122
Query: 981 VELKPLIQSL--VGLPG-VS--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
+SL L V GLS Q++RL IA L P ++ +DEPTS L
Sbjct: 123 -------ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 1030 DARAAA 1035
D A
Sbjct: 176 DPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 1e-08
Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 41/218 (18%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR---KTGGYIT-GNITISGYPKKQ--E 928
L +S + +PG ++G +G+GK++L+ L R + G I + IS
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIGLHDLRS 78
Query: 929 TFARISGYCEQNDIHSPFVTVYESLLYSAWLR--LPPE---VDSETRKMFIEEVMELVEL 983
+ I Q + +L+S +R L P D E + + +E V L
Sbjct: 79 RISIIP----Q-----------DPVLFSGTIRSNLDPFGEYSDEE-----LWQALERVGL 118
Query: 984 KPLIQSLV-GLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
K ++SL GL V LS QR+ L +A L+ I+ +DE T+ +D A++
Sbjct: 119 KEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 178
Query: 1038 MRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
+T+R TV+ H+ +D D + ++ +G
Sbjct: 179 QKTIR-EAFKDCTVLTIAHR--LDTIIDSDRILVLDKG 213
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 61/258 (23%), Positives = 100/258 (38%), Gaps = 54/258 (20%)
Query: 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTA 228
+D+S I G + LG +GK+T L L G L L SG+V NG D P R
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL---LPTSGKVRVNGKD-----PFRRR 92
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAI 288
+ + M + L + E+L + PD D + + +
Sbjct: 93 EEYLRSIGLV--MGQKLQLWW---DLPALDSLEVLKLIYE-------IPD---DEFAERL 137
Query: 289 ATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMD 348
D+ ++L L + + + R +S G+R R ++ P LF+D
Sbjct: 138 -----------DFLTEILDL----EGFLKWPV-RKLSLGQRMRAELAAALLHPPKVLFLD 181
Query: 349 EISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI-------ILLSDG 401
E + GLD + I LK++ T +++ T+ FDDI +L+ G
Sbjct: 182 EPTVGLDVNAQANIREFLKEYNEERQATVLLT-------THI-FDDIATLCDRVLLIDQG 233
Query: 402 QIVYQGPRELVLEFFESM 419
Q+V+ G + E F
Sbjct: 234 QLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-08
Identities = 58/240 (24%), Positives = 94/240 (39%), Gaps = 49/240 (20%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-- 225
L +VS + GR+ LGP +GK+T + + G L SG V G D+ + E
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQ 74
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY- 284
R Y+ +H+ +M VRE L F A +Y
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIA------------------------------GIYG 104
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
MK + + +I E+ + I +S G R+RV + ++
Sbjct: 105 MKGQLLKQRVEEMI----------ELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV 154
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE +TGLD + +I N +K I +I E + D +I+++ G+IV
Sbjct: 155 LILDEPTTGLDPNQLVEIRNVIKN---IGKDKTIILSTHIMQEVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 65/270 (24%), Positives = 100/270 (37%), Gaps = 54/270 (20%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
L VS IK G LLGP GKTTLL +AG + SG + +G D+ P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPH 70
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+R + Q+ +TV E +AF R + + E+ R EA
Sbjct: 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA----------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
+ + EG + +SGG+++RV +V
Sbjct: 115 LDLVQLEGYA-----------------------NRKPSQLSGGQQQRVAIARALVNEPKV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE LD + LK+ + G + + E + D I +++ G+I
Sbjct: 152 LLLDEPLGALDLKLRKDMQLELKR-LQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQ 210
Query: 405 YQG-PRELVLEFFESMGFKCPKRKGVADFL 433
G P E+ E P + VADF+
Sbjct: 211 QIGTPEEIYEE---------PANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 12/157 (7%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 934
L ++ G L ++G SG GKTTL+++++G Y G+IT+ G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 935 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLP 994
G QN+ P+ V +++ + L V+ R ++++ V L+ + +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
LS QR+R+ IA L ANP ++ +DEP LDA
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 19/190 (10%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
L G+S + G + ++G SG+GK+TL+ L+G G IT + G K R
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 992
G Q P +TV E++ + P +V ++ E+ +EL+E VG
Sbjct: 78 KVGMVFQQFNLFPHLTVLENVTLA-----PVKVKKLSKAEAREKALELLEK-------VG 125
Query: 993 LPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
L + LS Q++R+ IA L +P ++ DEPTS LD V+ +++ +
Sbjct: 126 LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185
Query: 1048 GRTVVCTIHQ 1057
G T++ H+
Sbjct: 186 GMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 27/225 (12%)
Query: 860 QEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNIT 919
M+L V E L LSG R G + L+G +GAGK+TL+ ++G +G +G+I
Sbjct: 2 ILMQLNDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQ 56
Query: 920 ISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE 976
+G P + AR Y Q +P W L +TR + +
Sbjct: 57 FAGQPLEAWSATELARHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLND 108
Query: 977 VMELVEL-KPLIQSLVGLPGVSGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLD 1030
V + L L +S L G QR RL + + ANP+ ++ +DEP + LD
Sbjct: 109 VAGALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD 164
Query: 1031 ARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
+ + R + G +V + H + A +L+KRG
Sbjct: 165 VAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 21/159 (13%)
Query: 887 LTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISG---YPKKQETFARIS-G 935
+TAL+G SG GK+TL+ D++ G K ITG +T+ G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 936 YCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLP 994
Q +PF +++YE++ Y LR D + +E + L ++ +
Sbjct: 87 MVFQKP--NPFPMSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSH 142
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 143 AF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 54/209 (25%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 889 ALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS---GYCEQN---DI 942
A++G +GAGK+TL +G +G++ I G P +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 943 HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002
SP TV + + + + +D ET + + ++ L+ L + P LS
Sbjct: 92 FSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHMLGLEELRDRV---P--HHLSGG 141
Query: 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGID 1061
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL- 200
Query: 1062 IFDAFDELFLMKRGG-------QEIYVGP 1083
+ + D +++M +G +EI++ P
Sbjct: 201 VPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
Length = 277 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
+T L+D+S ++ G L+GP GK+TLL +AG + SG V +G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP 67
Query: 219 MGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSR 259
+ P Y+ Q D + +TV + +A QGV
Sbjct: 68 VTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA 106
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 61/281 (21%), Positives = 110/281 (39%), Gaps = 73/281 (25%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
FE++ F+Y +K LKD++ IKPG ++GP +GKTTL+ L D
Sbjct: 5 FENVNFSY------DEKKPV-LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ- 56
Query: 207 KVSGRVTYNG---HDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL 263
G++ +G D+ + Q D + T+ E +
Sbjct: 57 --KGQILIDGIDIRDISRKSLRSMIGVVLQ-DTFLFSGTIMENIRLG------------- 100
Query: 264 TELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLEVCADTMVGDEMI 321
+P+ + ++A G ++ L G DT++G+
Sbjct: 101 ------------RPNATDEEVIEAAKEAG------AHDFIMKLPNGY----DTVLGE--- 135
Query: 322 RG--ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
G +S GER+ + M+ L +DE ++ +D+ T I L++ + G I
Sbjct: 136 NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEK---LMKGRTSI 192
Query: 380 ------SLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
S ++ A D I++L DG+I+ +G + +L
Sbjct: 193 IIAHRLSTIKNA-------DKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 4e-08
Identities = 68/265 (25%), Positives = 109/265 (41%), Gaps = 55/265 (20%)
Query: 157 ILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216
I+P K L+ +S ++ G ++GP SGK+TL + G SG V +G
Sbjct: 324 IVPPGGKK-PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG---IWPPTSGSVRLDG 379
Query: 217 HDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA 273
D+ ++ E + Y+ Q D + TV E +A R+ EN
Sbjct: 380 ADLKQWDRETFGKHIGYLPQ-DVELFPGTVAENIA----------RF--------GEN-- 418
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT 333
DP+ K I EA + + +L L DT++G +SGG+R+R+
Sbjct: 419 ---ADPE-----KII-----EAAKLAGVHELILRLPDGYDTVIGPGGA-TLSGGQRQRIA 464
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI-----SLLQPAPET 388
+ G + +DE ++ LD + N +K + T V+ SLL
Sbjct: 465 LARALYGDPKLVVLDEPNSNLDEEGEQALANAIK-ALKARGITVVVITHRPSLLGCV--- 520
Query: 389 YDLFDDIILLSDGQIVYQGPRELVL 413
D I++L DG+I G R+ VL
Sbjct: 521 ----DKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 887 LTALMGVSGAGKTTLM-------DVLSG-RKTGGYITGNITISGYPKKQETFARISGYCE 938
+TAL+G SG GK+TL+ D++ G R TG + I R G
Sbjct: 34 VTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVF 93
Query: 939 QNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997
Q +PF ++YE++ Y R+ E + +T +E+ ++ L ++ + +
Sbjct: 94 QRP--NPFPKSIYENVAYGP--RIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSAL- 148
Query: 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
LS Q++RL IA L NP +I MDEP S LD A A
Sbjct: 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 6e-08
Identities = 47/209 (22%), Positives = 71/209 (33%), Gaps = 49/209 (23%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+ D+S + G + GP +GKTTLL LAG L +G V + G + E
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNV-RE 71
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
Y+ E+T E L F N A I
Sbjct: 72 SYHQALLYLGHQPGIKTELTALENLHF-------------WQRFHGSGNAATIW------ 112
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+A+A + + GLE D + +S G+++RV + + PA
Sbjct: 113 ---EALA------------QVGLAGLE--------DLPVGQLSAGQQRRVALARLWLSPA 149
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVH 371
+DE T LD + + H
Sbjct: 150 PLWILDEPFTALDKEGVALLTALMAAHAA 178
|
Length = 209 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 6e-08
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ---ET 929
L+ +S RPG A++G G+GK+TL+ +L G + T G ++ + G +Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG----SVLLDGVDIRQIDPAD 536
Query: 930 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 989
R GY Q D + T+ +++ A P D E I EL + ++
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA-----PYADDEE----ILRAAELAGVTEFVRR 586
Query: 990 -------LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
+G G LS QR+ + +A L+ +P I+ +DEPTS +D R+ ++
Sbjct: 587 HPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK 645
Query: 1043 NTVDTGRTVVCTIHQP 1058
+ G+T+V H+
Sbjct: 646 RWL-AGKTLVLVTHRT 660
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 6e-08
Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 38/231 (16%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG-YPKKQ 927
E++LV LN +S F + ++G SG+GK+TL+ +G Y G I + Y +
Sbjct: 36 ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDK 93
Query: 928 ETFARISGYCEQNDIHS--------PFV-----------TVYESLLYSAWLRLPPEVDSE 968
+ + I + V T+ + +++ + +++
Sbjct: 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK 153
Query: 969 TRKMFIEEVMEL----VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1024
F M L +E P GLS Q++R+ IA L P I+ DE
Sbjct: 154 KLAKFYLNKMGLDDSYLERSPF-----------GLSGGQKRRVAIAGILAIQPEILIFDE 202
Query: 1025 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
PT+GLD + +M+ + + +TV H + + DE+ +M +G
Sbjct: 203 PTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKG 252
|
Length = 320 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 6e-08
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 32/186 (17%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLSGRKTGGYI---TGNITISGYPKKQETFARISGYCEQN 940
G L L+G +GAGKTTL+ R G I G + ++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 941 DIHS-----PFVTVYESLLYS-----AWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
H P ++V +++ WLR P D + + + V L L
Sbjct: 58 --HEFAWDFP-ISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRP 110
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
VG LS QR+R+ +A L PS++ +DEP +GLD ++ G
Sbjct: 111 VG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 1051 VVCTIH 1056
++ T H
Sbjct: 166 ILMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 56/215 (26%), Positives = 85/215 (39%), Gaps = 40/215 (18%)
Query: 864 LQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG- 922
L +EDK +L GL+ RPG + A+MG +G+GK+TL L+GR+ G + G
Sbjct: 7 LHVSVEDKAIL-RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGK 65
Query: 923 --------------------YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP 962
YP I G Q + + V R
Sbjct: 66 DLLELSPEDRAGEGIFMAFQYP------VEIPGVSNQFFLQTALNAVRS-------YRGQ 112
Query: 963 PEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1021
+D + +EE + L+++ L+ V + G S ++KR I V P +
Sbjct: 113 EPLDRFDFQDLMEEKIALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCI 168
Query: 1022 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
+DE SGLD A IV V + D R+ + H
Sbjct: 169 LDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH 203
|
Length = 248 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 7e-08
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD---M 219
T+L DVS I+ G + LLGP SGK+TLL +AG L+ SG + +G D +
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG-LEE--PDSGSILIDGEDLTDL 67
Query: 220 GEFVP--ERTAAYISQHDNHIGEMTVRETLAF 249
+ +P R + Q +TV E +A
Sbjct: 68 EDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 7e-08
Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 45/251 (17%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD---M 219
+LKD+S I+PG ++GP SGK+TL+ L D + SG + +G D +
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDI 396
Query: 220 GEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ +SQ D + T+RE +A G
Sbjct: 397 SLDSLRKRIGIVSQ-DPLLFSGTIRENIAL------------------------GRPDAT 431
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
D ++ E + L DT+VG E +SGG+R+R+ ++
Sbjct: 432 DEEIEEALKLANAHEF---------IANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALL 481
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399
L +DE ++ LD+ T I + LK+ + T +I+ T D II+L
Sbjct: 482 RNPPILILDEATSALDTETEALIQDALKK-LLKGRTTLIIAHR---LSTIKNADRIIVLD 537
Query: 400 DGQIVYQGPRE 410
+G+IV +G E
Sbjct: 538 NGRIVERGTHE 548
|
Length = 567 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 7e-08
Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 27/215 (12%)
Query: 867 VLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY------ITGNITI 920
V +L LS PG +TAL+G +GAGK+TL+ L+G TGG +TG++T+
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68
Query: 921 SGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAW--LRLPPEVDSETRKMFIE 975
+G P AR+ Q + + E +L + R + ++
Sbjct: 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEI-AW 127
Query: 976 EVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVEL---------VANPSIIFMDEPT 1026
+ + L L+ V+ LS + R+ A L P + +DEPT
Sbjct: 128 QALALAGATALVGR-----DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT 182
Query: 1027 SGLDARAAAIVMRTVRNTVDTGRTVVCTI-HQPGI 1060
+ LD ++ TVR V I H P +
Sbjct: 183 AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL 217
|
Length = 272 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 7e-08
Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 44/173 (25%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE 928
+ +LL LS G A++G +GAGK+TL+ +L+G G ++G + + G K
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKV-GETVK-- 386
Query: 929 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 988
GY +Q+ +T +EE+ E +
Sbjct: 387 -----IGYFDQH--------------RDELD------PDKTV---LEELSEGFPDGDEQE 418
Query: 989 SL-----VGLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
G G V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 419 VRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 7e-08
Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 26/194 (13%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVL-------SGRKTGGYITGNITISGYPKKQ 927
L+GL+ RPG AL+G SGAGK+TL +L SGR I + G +Q
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGR---------ILLDGVDLRQ 406
Query: 928 ----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL 983
E AR++ + + + +V E++ Y EV++ R E + L
Sbjct: 407 LDPAELRARMALVPQDPVLFA--ASVMENIRYGRPDATDEEVEAAARAAHAHEFIS--AL 462
Query: 984 KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
+ +G GV+ LS QR+R+ IA ++ + I+ +DE TS LDA + +V + +
Sbjct: 463 PEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-E 520
Query: 1044 TVDTGRTVVCTIHQ 1057
T+ GRT + H+
Sbjct: 521 TLMKGRTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 7e-08
Identities = 59/205 (28%), Positives = 88/205 (42%), Gaps = 24/205 (11%)
Query: 862 MKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITIS 921
M+L V L LS R G + L+G +GAGK+TL+ ++G G +G+I +
Sbjct: 1 MQLNDVAVSTR--LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFA 55
Query: 922 GYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 978
G P + AR Y Q + V++ L L P + +E + EV
Sbjct: 56 GQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVA 111
Query: 979 ELVELKPLIQSLVGLPGVSGLSTE-QRKRLTIAVEL----VANPS--IIFMDEPTSGLDA 1031
E + L + V +SG E QR RL AV L NP+ ++ +DEP + LD
Sbjct: 112 EALGLDDKLGRSVN--QLSG--GEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDV 166
Query: 1032 RAAAIVMRTVRNTVDTGRTVVCTIH 1056
A + R + G VV + H
Sbjct: 167 AQQAALDRLLSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 8e-08
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 44/186 (23%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 933
+L+G++ +TALMG SG+GK+TL+ V N I YP+ AR+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 934 SG--YCEQNDIHS--------------------PFVTVYESLLYSAWLRLPPEVDSETRK 971
SG Y + DI P ++++E++ L+L V S+ ++
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALG--LKLNRLVKSK-KE 118
Query: 972 MF--IEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
+ + +E +L ++ + P LS Q++RL IA L P ++ DEPT+ L
Sbjct: 119 LQERVRWALEKAQLWDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 1030 DARAAA 1035
D A
Sbjct: 178 DPENTA 183
|
Length = 250 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 9e-08
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 31/205 (15%)
Query: 885 GVLTALMGVSGAGKTTLMDVLSG--RKTGG--YITG-NITISGYPKKQETFARISGYCEQ 939
G + +MG+SG+GK+T + +L+ T G +I G NI + +E + G Q
Sbjct: 19 GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78
Query: 940 NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG- 998
P +T+ ++ L + RK E+ +EL++L VGL
Sbjct: 79 QFALFPHMTILQNTSLGPELL---GWPEQERK---EKALELLKL-------VGLEEYEHR 125
Query: 999 ----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVC 1053
LS ++R+ +A L A P I+ MDE S LD + ++ T +T+V
Sbjct: 126 YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVF 185
Query: 1054 TIHQPGIDIFDAF---DELFLMKRG 1075
H D+ +A D + +MK G
Sbjct: 186 ITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 48/206 (23%), Positives = 75/206 (36%), Gaps = 48/206 (23%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM-----GE 221
+LK ++ + G + LLG +GK+TLLL L G L SG V +G + G
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGL 63
Query: 222 FVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
+ + Q D+ + V + +AF G+ E+ RR EA
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSE-----AEVERRVREA------- 111
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
L +G + +SGGE+KRV +
Sbjct: 112 ----------------------LTAVGASGLR-----ERPTHCLSGGEKKRVAIAGAVAM 144
Query: 341 PALALFMDEISTGLDSSTTFQIVNCL 366
L +DE + GLD + Q++ L
Sbjct: 145 RPDVLLLDEPTAGLDPAGREQMLAIL 170
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 33/193 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL+ ++ ++PG + ++GP SGK+TL LAG+ D + G V + G D+ E PE
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPE 73
Query: 226 RTAAYISQHDNHIGEMTVRETLAFS--ARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
A GE +AF GV +++ L T L + G +P D
Sbjct: 74 DRA----------GEGIF---MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF 120
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV-GPA 342
+++ + K+ L++ D + + G SGGE+KR +M V P
Sbjct: 121 -----------QDLMEE---KIALLKMPEDLLTRSVNV-GFSGGEKKRNDILQMAVLEPE 165
Query: 343 LALFMDEISTGLD 355
L + +DE +GLD
Sbjct: 166 LCI-LDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 18/188 (9%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 934
L GLS + G TAL+G +GAGK+TL+ L+G G + + G E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 935 ---GYCEQNDIHSPFV-TVYESLLYSAW-LRL-PPEVDSETRKMFIEEVMELVELKPLIQ 988
G Q+ F TV++ + + + L EV+ EE ++ V +
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV-----EEALKAVRMWDFRD 133
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
LS Q+KR+ IA L +P +I +DEP + LD R +M + + G
Sbjct: 134 K-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 1049 RTVVCTIH 1056
+TV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 17/168 (10%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP-------KK 926
+L+ +S + G + A++G SG+GK+TL+ +L G T +G++ +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 927 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 986
E + G+ Q P T E++ +P + + +E++ L
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENV------AMPLLIGKKKPAEINSRALEMLAAVGL 135
Query: 987 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
P S LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 136 EHRANHRP--SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 320 MIRGISGGERKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV 378
+ +SGG+R+RV ++ P L L +DE ++GLD ++ +++ L++ G V
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDL-LLLDEPTSGLDPASRERLLELLRELA--EEGRTV 133
Query: 379 ISLLQPAPETYDLFDDIILLSDGQ 402
I + D +I+L DG+
Sbjct: 134 IIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 60/274 (21%), Positives = 98/274 (35%), Gaps = 64/274 (23%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
K L +VS I+ G ++G SGK+TL LAG S SG + +G
Sbjct: 14 GGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKP 70
Query: 219 MGEFVPERTAA----YISQH-DNHIG-EMTVRETLAFSARCQGVGSRYELLTELARRENE 272
+ + + Q + + TV L+ R G+ + + EL +
Sbjct: 71 LAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLD---Q 127
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRV 332
G+ P +L E+ SGG+R+R+
Sbjct: 128 VGLPPS-----------------------FLDRRPHEL--------------SGGQRQRI 150
Query: 333 TTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI------SLLQPA 385
++ P L L +DE ++ LD S QI+N L + G + +L+
Sbjct: 151 AIARALIPEPKL-LILDEPTSALDVSVQAQILNLL-LELKKERGLTYLFISHDLALV--- 205
Query: 386 PETYDLFDDIILLSDGQIVYQGPRELVLEFFESM 419
+ D I ++ +GQIV GP E +L
Sbjct: 206 ---EHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-07
Identities = 58/217 (26%), Positives = 86/217 (39%), Gaps = 31/217 (14%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+L++VS + PG L+G +GK+TLL LAG+L+ SG VT G V
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVT---RPKGLRV-- 68
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
Y+SQ E TV + + +G G ELL EL D +
Sbjct: 69 ---GYLSQEPPLDPEKTVLDYVI-----EGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 286 KAIATEGQ---EANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ EA L LG D V +SGG R+RV ++
Sbjct: 121 ALLEELDGWTLEARAEEA--LLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEP 172
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
L +DE + LD + + + LK++ GT ++
Sbjct: 173 DLLLLDEPTNHLDLESIEWLEDYLKRY----PGTVIV 205
|
Length = 530 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-07
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 38/193 (19%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNI-TISGYPKKQETFARISGYCEQND 941
RPG + ++G +G GK+T + +L+G + N+ P E R G QN
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGE-----LKPNLGRYEDPPSWDEVIKRFRGTELQN- 151
Query: 942 IHSPFVTVYESLLYSAWLR----------LPPEVDSETRKM--------FIEEVMELVEL 983
Y LY LR +P V + ++ +EV+E + L
Sbjct: 152 --------YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGL 203
Query: 984 KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
+ ++ VS LS + +R+ IA L+ + + F DEP+S LD R R +R
Sbjct: 204 ENVLDR-----DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRE 258
Query: 1044 TVDTGRTVVCTIH 1056
+ G+ V+ H
Sbjct: 259 LAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 62/264 (23%), Positives = 115/264 (43%), Gaps = 45/264 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+ ++++ I G T ++GP GK+TLL L+ + G V +G + + +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASK 77
Query: 226 RTAAYI---SQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
A I +Q+ G++TV+E +A +G L T R+E+E +
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVA-----RGRYPHQPLFTRW-RKEDEEAV------- 124
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
T+ +A IT + D+ + +SGG+R+R ++
Sbjct: 125 -------TKAMQATGITH---------------LADQSVDTLSGGQRQRAWIAMVLAQET 162
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ +DE +T LD S ++ L + ++ G + ++L + +I L +G+
Sbjct: 163 AIMLLDEPTTWLDISHQIDLLELLSE-LNREKGYTLAAVLHDLNQACRYASHLIALREGK 221
Query: 403 IVYQG-PRELVL-EFFESM-GFKC 423
IV QG P+E+V E E + G +C
Sbjct: 222 IVAQGAPKEIVTAELIERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDI 1062
++RL IA LV P ++FMDEPT GLD A ++ +R V + G VV H +
Sbjct: 157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVAR 216
Query: 1063 FDAFDELFLMKRGG 1076
A D L +MK+G
Sbjct: 217 LLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 58/259 (22%), Positives = 96/259 (37%), Gaps = 53/259 (20%)
Query: 150 DIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVS 209
I G P LT + G +T ++GP SGK+TLL +AG S
Sbjct: 5 KIRFSYGEQPMHFD-LTFAQ--------GEITAIVGPSGSGKSTLLNLIAGFE---TPQS 52
Query: 210 GRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELAR 268
GRV NG D+ P +R + + Q +N +TV + + G+ +L E
Sbjct: 53 GRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL-----GLSPGLKLTAE--D 105
Query: 269 RENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328
R+ + K + E +SGGE
Sbjct: 106 RQAIEVALARVGLAGLEKRLPGE--------------------------------LSGGE 133
Query: 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388
R+RV ++V L +DE LD + ++++ L +H + V+ + +
Sbjct: 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLD-LVLDLHAETKMTVLMVTHQPEDA 192
Query: 389 YDLFDDIILLSDGQIVYQG 407
L ++ L +G+I QG
Sbjct: 193 KRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 51/219 (23%), Positives = 90/219 (41%), Gaps = 39/219 (17%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221
IL D++ I+ G+M ++G SGK+TLL + G L+ SG+V NG +
Sbjct: 8 FGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNII-GLLEK--FDSGQVYLNGQE--- 61
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN-EAGIKPDPD 280
T S+ + RE L + + + L+ EN + G+K
Sbjct: 62 -----TPPLNSKKASKF----RREKLGY------LFQNFALIENETVEENLDLGLK---- 102
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
Y K E +E L+ +GL + + + +SGGE++RV ++
Sbjct: 103 ---YKKLSKKEKREKKK---EALEKVGLNLKLKQKIYE-----LSGGEQQRVALARAILK 151
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
P + DE + LD ++++ L + + G +I
Sbjct: 152 PPPLILADEPTGSLDPKNRDEVLDLLLELN--DEGKTII 188
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 67/277 (24%), Positives = 105/277 (37%), Gaps = 74/277 (26%)
Query: 157 ILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216
+ +T LKDVS + G + ++G +GK+TL+ + G L+ SG V +G
Sbjct: 10 VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING-LERP--TSGSVLVDG 66
Query: 217 HDMGEFVP------ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRE 270
D+ R I QH N + TV E +A GV E+ R
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPK-----AEIEERV 121
Query: 271 NEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERK 330
E L+++GLE AD +SGG+++
Sbjct: 122 LE-----------------------------LLELVGLEDKADA-----YPAQLSGGQKQ 147
Query: 331 RVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPA 385
RV + ALA L DE ++ LD TT I+ L+ IN + +L
Sbjct: 148 RVG-----IARALANNPKVLLCDEATSALDPETTQSILALLRD---INRELGLTIVLI-- 197
Query: 386 PETY------DLFDDIILLSDGQIVYQGPRELVLEFF 416
T+ + D + ++ G++V +G V E F
Sbjct: 198 --THEMEVVKRICDRVAVMEKGEVVEEGT---VEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 31/206 (15%)
Query: 881 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR--ISGYCE 938
F G +TA++G SG+GK+TL+++++G +T +G + I+G A +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 939 QNDIHSPFVTVYES--LLYSAWLRLPPE----VDSETRKMFIEEVMELVELKPLIQSLVG 992
+N++ +TV ++ L S L+L E ++ ++ + + +
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKR------------ 124
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGR 1049
LPG LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T
Sbjct: 125 LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKM 180
Query: 1050 TVVCTIHQPGIDIFDAFDELFLMKRG 1075
TV+ HQP D + + G
Sbjct: 181 TVLMVTHQPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-07
Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 58/254 (22%)
Query: 846 SLTFDEV--VYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMD 903
S+ F+ V +YS P M+ +G L+ +S G AL+G +G+GK+TLM
Sbjct: 2 SIKFENVDYIYSPGTP--MEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQ 51
Query: 904 VLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 963
+ +G ITI+GY ET G + V++ P
Sbjct: 52 HFNALLKPS--SGTITIAGYHITPET-----GNKNLKKLRKKVSLVFQF----------P 94
Query: 964 EVDSETRKMFIEEVMELVELKPL----------IQSLVGLPGVSGLSTE----------- 1002
E ++F V++ VE P ++L L V GLS +
Sbjct: 95 EA-----QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFELSG 148
Query: 1003 -QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGID 1061
Q +R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H D
Sbjct: 149 GQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-D 207
Query: 1062 IFDAFDELFLMKRG 1075
+ + D++ +++ G
Sbjct: 208 VAEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 54/237 (22%), Positives = 92/237 (38%), Gaps = 49/237 (20%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL ++S ++ G L+ GP GK+TLL +A + + SG + + G D+ PE
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPE 77
Query: 226 R---TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+Y +Q G+ TV + L F +++ +PDP
Sbjct: 78 IYRQQVSYCAQTPTLFGD-TVYDNLIFP---------WQI----------RNQQPDP--- 114
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ L+ L DT++ + I +SGGE++R++ +
Sbjct: 115 ---AIFLDD-----------LERFAL---PDTIL-TKNIAELSGGEKQRISLIRNLQFMP 156
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399
L +DEI++ LD S VN + AV+ + E D +I L
Sbjct: 157 KVLLLDEITSALDESNK-HNVNEIIHRYVREQNIAVLWVTHDKDEINHA-DKVITLQ 211
|
Length = 225 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP------KKQ 927
+L +S + G L+G SG GK+TL +L G + G ++ G K++
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDRKQR 83
Query: 928 ETFARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 985
F R Q+ + P +TV + + LR +D +K I E++++V L+
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 986 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 142 ED--ADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 3e-07
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 37/216 (17%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY--ITGNITISGYPKKQETFAR 932
L GLS + G AL+G +G GK+TL+ +L T + G I ++G P
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNGQP-------- 403
Query: 933 ISGYCEQNDIHSPFVTVYESL-LYSAWLR------LPPEVDSETRKMFIEEVMELVELKP 985
I+ Y E + V + + L+SA LR P D + EV++ V L+
Sbjct: 404 IADYSEA-ALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA-----LIEVLQQVGLEK 457
Query: 986 LIQSLVGLP---GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
L++ GL G G LS +++RL IA L+ + ++ +DEPT GLDA ++
Sbjct: 458 LLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILEL 517
Query: 1041 VRNTVDTGRTVVCTIHQ-PGIDIFDAFDELFLMKRG 1075
+ +TV+ H+ G+ + FD + +M G
Sbjct: 518 LA-EHAQNKTVLMITHRLTGL---EQFDRICVMDNG 549
|
Length = 574 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 14/172 (8%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTT---LMDVLSGRKTGGYITGNITISG---YPKKQE 928
L G+S + A +G SG GK+T L + ++ + G I I G Y K +
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 929 T--FARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 985
+ G Q +PF +++E++ Y LR+ D+ + +EE ++ L
Sbjct: 79 VDELRKNVGMVFQRP--NPFPKSIFENVAYG--LRVNGVKDNAFIRQRVEETLKGAALWD 134
Query: 986 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
++ + + LS Q++RL IA + +PS++ MDEP S LD + A V
Sbjct: 135 EVKDKLKESAFA-LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
|
Length = 250 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 64/259 (24%), Positives = 105/259 (40%), Gaps = 53/259 (20%)
Query: 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF----VP 224
+DVS + PG + ++G SGK+TLL LAG+L G TY E +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLS 76
Query: 225 E-------RTA-AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIK 276
E RT ++ Q+ M V R +G+R+
Sbjct: 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH---------------- 120
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
Y AT D+ +V E+ + D++ R SGG ++R+
Sbjct: 121 -------YGNIRATAQ-------DWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIAR 161
Query: 337 MMV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
+V P L +FMDE + GLD S ++++ L+ V + G AVI + L +
Sbjct: 162 NLVTRPRL-VFMDEPTGGLDVSVQARLLDLLRGLV-RDLGLAVIIVTHDLGVARLLAQRL 219
Query: 396 ILLSDGQIVYQGPRELVLE 414
+++ G++V G + VL+
Sbjct: 220 LVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 55/241 (22%), Positives = 91/241 (37%), Gaps = 50/241 (20%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE- 225
IL ++S ++ G + GP GK+TLL +A L S SG + + G D+ PE
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVA-SLISP--TSGTLLFEGEDVSTLKPEA 74
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
+ +Y +Q G+ TV + L F + R +PD +
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFPWQ--------------IRNR-----RPDRAAAL 114
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT-TGEMMVGPA 342
+ A D L + I +SGGE++R+ + P
Sbjct: 115 DLLARFALP-------DSIL--------------TKNITELSGGEKQRIALIRNLQFMPK 153
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ L +DEI++ LD S I + ++V AV+ + + D +I L G
Sbjct: 154 I-LLLDEITSALDESNKRNIEEMIHRYVR-EQNVAVLWITHDKDQAIRHADKVITLQPGH 211
Query: 403 I 403
Sbjct: 212 A 212
|
Length = 223 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 3e-07
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 19/187 (10%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 933
LL +S G L L G +GAGKTTL+ +++G G I K++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 934 SGYC---EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
C ++ I +P++T+ E+ LY ++ + I E+ L L+ LI
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 1051 VVCTIHQ 1057
V+ T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 4e-07
Identities = 63/273 (23%), Positives = 101/273 (36%), Gaps = 65/273 (23%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
+ + DV+ I+ G +L+GP SGKTT L + ++ + SG + +G D+ +
Sbjct: 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDL 68
Query: 223 VPE---RTAAYISQHDNHIG---EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIK 276
P R Y+ Q IG +TV E +A + G
Sbjct: 69 DPVELRRKIGYVIQ---QIGLFPHLTVAENIATVPKLLGWDK------------------ 107
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
+ D L ++GL+ D +SGG+++RV
Sbjct: 108 ----------------ERIKKRADELLDLVGLDPSE---YADRYPHELSGGQQQRVG--- 145
Query: 337 MMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL 391
V ALA L MDE LD T Q+ +K + G ++ + E L
Sbjct: 146 --VARALAADPPILLMDEPFGALDPITRKQLQEEIK-ELQKELGKTIVFVTHDIDEALKL 202
Query: 392 FDDIILLSDGQIVYQG-PRELVL----EFFESM 419
D I ++ G+IV P E++ +F E
Sbjct: 203 ADRIAVMDAGEIVQYDTPDEILANPANDFVEDF 235
|
Length = 309 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 30/167 (17%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGG--YITGN-ITISGYPKKQET 929
L G++ + G +L+G SG GK+TL++++SG + T G + G IT G P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-PDRMVV 59
Query: 930 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL-----K 984
F QN P++TV E+ + A R+ P++ R+ +EE + LV L K
Sbjct: 60 F--------QNYSLLPWLTVREN-IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK 110
Query: 985 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
Q LS ++R+ IA L P ++ +DEP LDA
Sbjct: 111 RPGQ----------LSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 4e-07
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 12/155 (7%)
Query: 887 LTALMGVSGAGKTTLM---DVLSGRKTGGYITGNITISGY----PKKQETFARIS-GYCE 938
+TA++G SG GKTTL+ + ++ G + G I G P+ T R G
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVF 90
Query: 939 QNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 998
Q P +++Y+++ + R+ +EE ++ L ++S + PG
Sbjct: 91 QKPTPFP-MSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTR- 146
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 4e-07
Identities = 51/246 (20%), Positives = 100/246 (40%), Gaps = 46/246 (18%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
+HL + D++ + G + ++GP +GK+TLL +AG ++ SG + N
Sbjct: 11 EHLPMEFDLN--VADGEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGL 65
Query: 223 VP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
P +R + + Q +N +TVR+ + G+ P
Sbjct: 66 APYQRPVSMLFQENNLFAHLTVRQNIGL------------------------GLHPG--- 98
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
+K A + ++ + +G+ AD + D + +SGG+R+RV +V P
Sbjct: 99 ---LKLNAEQQEKVVDAA----QQVGI---ADYL--DRLPEQLSGGQRQRVALARCLVRP 146
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE + LD +++ +KQ T ++ + + + I ++S G
Sbjct: 147 NPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQG 205
Query: 402 QIVYQG 407
+I
Sbjct: 206 KIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISG---YPKKQE 928
L+G+S F LTAL+G SG GK+T + L+ ITG I G Y K +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 929 TFA--RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 986
+ G Q PF +VY+++ Y L++ D E +EE ++ +
Sbjct: 80 LVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAIWKE 136
Query: 987 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
+ + S Q++R+ IA L P ++ +DEPTS LD +++ + T+
Sbjct: 137 TKDNLD-RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETL 190
|
Length = 251 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 4e-07
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 13/153 (8%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYI-TGNITISGYPKKQ--ETFARISGYC 937
R G + +MG+SG+GK+TL+ ++ T G + I+ +K+ E +
Sbjct: 48 REGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMV 107
Query: 938 EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997
Q+ P TV E++ + ++ V R+ E +ELV L+
Sbjct: 108 FQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPD----- 159
Query: 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
LS ++R+ +A L +P I+ MDE S LD
Sbjct: 160 ELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 5e-07
Identities = 71/253 (28%), Positives = 105/253 (41%), Gaps = 50/253 (19%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
ILK +S ++ G ++GP SGK+TL L G SG V +G D+ ++ E
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVG---IWPPTSGSVRLDGADLRQWDRE- 406
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
Q HIG + Q V EL + EN A + D + K
Sbjct: 407 ------QLGRHIGYLP-----------QDV----ELF-DGTIAENIARFGEEADPE---K 441
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG-PALAL 345
I EA + + +L L DT +G+ +SGG+R+R+ + G P L +
Sbjct: 442 VI-----EAARLAGVHELILRLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFL-V 494
Query: 346 FMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI-----SLLQPAPETYDLFDDIILLSD 400
+DE ++ LDS + + GT V+ S L D I++L D
Sbjct: 495 VLDEPNSNLDSEGEAALAAAIL-AAKARGGTVVVIAHRPSALASV-------DKILVLQD 546
Query: 401 GQIVYQGPRELVL 413
G+I GPRE VL
Sbjct: 547 GRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 5e-07
Identities = 40/118 (33%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL+ VS + G +T +LG GKTTLL L G L SG + +G D+ + P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70
Query: 226 RTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSR------YEL---LTE-LARR 269
A AY+ Q +TV E L SR YEL L E L RR
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRR 128
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 5e-07
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 20/165 (12%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 934
L+ +S PG AL+G SG+GK+TL++++ + +G I + G+ T A +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 935 GYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEV------MELVELKPL 986
D+ T+ ++ Y + D IE + V+ PL
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGR----TEQADRAE----IERALAAAYAQDFVDKLPL 457
Query: 987 -IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+ + +G GV LS QR+RL IA L+ + I+ +DE TS LD
Sbjct: 458 GLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALD 501
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 14/178 (7%)
Query: 890 LMGVSGAGKTTLMDVLS----GRKTGGYITGN-ITISGYPKKQETFA--RISGYCEQNDI 942
L+G SGAGK++L+ VL+ R I GN S P + R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92
Query: 943 HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002
P +TV E+L+ + P V ++ + +L++ L P LS
Sbjct: 93 LWPHLTVQENLIEA-----PCRVLGLSKDQALARAEKLLKRLRLKPYADRYP--LHLSGG 145
Query: 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1060
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+ +
Sbjct: 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV 203
|
Length = 242 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 11/155 (7%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISG---YPKKQETFA--RISG 935
P +TA +G SG GK+T++ L+ G + G + + G Y + A R G
Sbjct: 29 PRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIG 88
Query: 936 YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG 995
Q P +++ ++++ A L+L + + +E+ + L ++ + PG
Sbjct: 89 MVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPG 146
Query: 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 147 -GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 5e-07
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 20/192 (10%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISGYPKKQETF- 930
LN ++ +TAL+G SG GK+T + L+ G I GN+ G F
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 931 ----ARISGYCEQNDIHSPFV-TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 985
R G Q +PF+ ++Y+++ Y P++ K ++E++E K
Sbjct: 83 ILELRRKIGMVFQTP--NPFLMSIYDNISYG------PKIHGTKDKKKLDEIVEQSLKKS 134
Query: 986 LIQSLVGLP---GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
+ + V LS Q++RL IA L P++I MDEPTS LD + + +
Sbjct: 135 ALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELII 194
Query: 1043 NTVDTGRTVVCT 1054
N ++ ++ T
Sbjct: 195 NLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 5e-07
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 17/177 (9%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 934
L+ +S R G + +L G +GAGK+TLM VLSG G G I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 935 GYCEQND---IHS-----PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 986
E+ IH ++V E++ + +D + M++ L +LK
Sbjct: 78 D-TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYD--AMYLRAQKLLAQLKLD 134
Query: 987 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
I P V L Q++ + IA L ++ +DEPT+ L A+++ +R+
Sbjct: 135 IN--PATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRD 188
|
Length = 506 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP---KKQET 929
L+ +S + G + AL+G +G+GK+TL+ ++G +G I I G E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEE 70
Query: 930 FARISGYCEQ 939
R GY Q
Sbjct: 71 LRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 6e-07
Identities = 58/262 (22%), Positives = 94/262 (35%), Gaps = 71/262 (27%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTT---LLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
++ +S ++ G LLGP +GKTT +LL L S+ + GE
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLC----------GEP 70
Query: 223 VPERT------AAYISQHDNHIGEMTVRETLAFSARCQGVGS-----RYELLTELARREN 271
VP R + Q DN + TVRE L R G+ + L E A+ EN
Sbjct: 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN 130
Query: 272 EAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKR 331
+A D + +SGG ++R
Sbjct: 131 KA--------------------------------------------DAKVGELSGGMKRR 146
Query: 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL 391
+T +V L +DE +TGLD + L+ + G ++ E L
Sbjct: 147 LTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS--LLARGKTILLTTHFMEEAERL 204
Query: 392 FDDIILLSDGQIVYQG-PRELV 412
D + ++ +G+ + +G P L+
Sbjct: 205 CDRLCVIEEGRKIAEGAPHALI 226
|
Length = 306 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-07
Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 21/213 (9%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR 932
LL+ L+ RPG + G SGAGKT+L+ L+G + +G I P
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSALL-- 459
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 992
+ Q + P T+ E+L Y P+ + V+ V L L + L
Sbjct: 460 ---FLPQRP-YLPQGTLREALCYP---NAAPDFSDAE----LVAVLHKVGLGDLAERLDE 508
Query: 993 L-PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
LS +++RL A L+ P +F+DE TS LD + + ++ + TV
Sbjct: 509 EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATV 567
Query: 1052 VCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084
+ H+P + F + +L L+ G + P
Sbjct: 568 ISVGHRPTLWNFHS-RQLELLDDAGGQNLKPPA 599
|
Length = 604 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 7e-07
Identities = 62/251 (24%), Positives = 102/251 (40%), Gaps = 53/251 (21%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221
K +LK VS I G + ++G SGK+TLL L G LD+ SG V +NG +
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG-LDNP--TSGEVLFNGQSLS- 70
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
N ++ + L F + + LL + EN
Sbjct: 71 ----------KLSSNERAKLR-NKKLGF------IYQFHHLLPDFTALEN---------- 103
Query: 282 DVYMKAIAT--EGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
V M + +EA L+ +GLE + + +SGGER+RV +V
Sbjct: 104 -VAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSE-----LSGGERQRVAIARALV 157
Query: 340 G-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-----FD 393
P+L + DE + LD++ +I+ L ++ T+ + + T+DL D
Sbjct: 158 NQPSL-VLADEPTGNLDNNNA-KIIFDLMLELNRELNTSFLVV------THDLELAKKLD 209
Query: 394 DIILLSDGQIV 404
++ + DGQ+
Sbjct: 210 RVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 47/224 (20%), Positives = 77/224 (34%), Gaps = 49/224 (21%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
+ + +S + G + GP GKTTLL LAG L SG V +NG + E
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRD 69
Query: 225 ERT--AAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
E Y+ E++ E L F A G G++ + LA
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAAIHG-GAQRTIEDALAA-------------- 114
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+GL D +S G+++R+ + + A
Sbjct: 115 -----------------------VGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRA 146
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP 386
+DE +T LD + + L+ H+ G +++ Q
Sbjct: 147 PLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLG 189
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDI 1062
++RL IA LV P ++FMDEPT GLD A ++ +R V D G V+ H G+
Sbjct: 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVAR 213
Query: 1063 FDAFDELFLMKRG 1075
A L +M++G
Sbjct: 214 LLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 41/210 (19%)
Query: 883 RPGVLTALMGVSGAGKTTL-------MDVLSGRKTGGYITGNITISGYPKKQETFARISG 935
+PG + G +G+GK++L +D+ G+ + I IS P +R+S
Sbjct: 45 KPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL-HTLRSRLS- 98
Query: 936 YCEQNDIHSPFVTVYESLLYSAWLR--LPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 993
+ + + +L+S +R L PE +++ E +E+ +LK +++SL G
Sbjct: 99 -----------IILQDPILFSGSIRFNLDPECKCTDDRLW--EALEIAQLKNMVKSLPG- 144
Query: 994 PGVSGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
G+ + TE QR+ +A V SI+ MDE T+ +D I+ + V T
Sbjct: 145 -GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVM-TA 202
Query: 1046 DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
RTVV H+ I DA D + ++ RG
Sbjct: 203 FADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 8e-07
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 20/156 (12%)
Query: 887 LTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISG---YPKKQETFA--RISGYCE 938
+TAL+G SG GK+T + L+ + I G + + G Y K + + G
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 939 QNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG---LP 994
Q +PF +++Y+++ Y P + K +++++E K + V
Sbjct: 92 QKP--NPFPMSIYDNVAYG------PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK 143
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
LS Q++RL IA + P +I MDEPTS LD
Sbjct: 144 SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 9e-07
Identities = 56/258 (21%), Positives = 91/258 (35%), Gaps = 69/258 (26%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE------ 221
+ V+ ++ G + LGP +GKTT + L L + SG G+D+
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVR 65
Query: 222 ----FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
VP+ + ++T RE L R G L + E E +
Sbjct: 66 RSIGIVPQYASVDE--------DLTGRENLEMMGRLYG----------LPKDEAEERAEE 107
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM 337
L++ L D + SGG R+R+
Sbjct: 108 ------------------------LLELFEL-----GEAADRPVGTYSGGMRRRLDIAAS 138
Query: 338 MVGPALALFMDEISTGLDSST---TFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394
++ LF+DE +TGLD T + + LK+ G ++ E L D
Sbjct: 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-----EGVTILLTTHYMEEADKLCDR 193
Query: 395 IILLSDGQIVYQG-PREL 411
I ++ G+I+ +G P EL
Sbjct: 194 IAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 9e-07
Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 26/217 (11%)
Query: 858 MPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT 915
M E+K G L +LN +S + R G A+ G SG GK+TL+ +++ T G +
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 916 --GNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMF 973
G +S K E + + YC Q TV ++L++ +R R
Sbjct: 62 FEGE-DVSTL--KPEAYRQQVSYCAQTPALFG-DTVEDNLIFPWQIR----NRRPDRAAA 113
Query: 974 IEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
++ ++ L I + ++ LS +++R+ + L P I+ +DE TS LD
Sbjct: 114 LD-LLARFALPDSILT----KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168
Query: 1034 A----AIVMRTVRNTVDTGRTVVCTIHQP--GIDIFD 1064
++ R VR + V+ H I D
Sbjct: 169 KRNIEEMIHRYVR---EQNVAVLWITHDKDQAIRHAD 202
|
Length = 223 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 9e-07
Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)
Query: 884 PGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQETFARISGY 936
+TAL+G SG GK+T + D++ K I G + + G Q+ Y
Sbjct: 28 ENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----QDI------Y 73
Query: 937 CEQNDIHS-------------PF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV- 981
D++ PF +++Y+++ Y P K ++E++E
Sbjct: 74 KSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG------PRTHGIKDKKKLDEIVEKSL 127
Query: 982 -------ELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
E+K L +S +GL G Q++RL IA L P ++ MDEPTS LD
Sbjct: 128 KGAALWDEVKDRLKKSALGLSG------GQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 9e-07
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 13/161 (8%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ--ET 929
+N S G + +MG+SG+GK+TL+ +L+ T G I I+ + E
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 930 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 989
+ Q+ P TV E++ + ++ P+ + E R E +ELV L+
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREER---ALEALELVGLEGYADK 160
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
LS ++R+ +A L +P I+ MDE S LD
Sbjct: 161 YPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 62/256 (24%), Positives = 102/256 (39%), Gaps = 62/256 (24%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
L+DVS I G L GP +GK+TLL + G+ + G++ NGHD+ + R
Sbjct: 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSR-LKGR 72
Query: 227 TAAYISQH------DNH-IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
++ + D + + TV E +A R G R E+ RR +E
Sbjct: 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR-----EIRRRVSEV------ 121
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
L ++GL+ A + +SGGE++RV +V
Sbjct: 122 -----------------------LDLVGLKHKARALPSQ-----LSGGEQQRVAIARAIV 153
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHIN-SGTAVISLLQPAPETYDLFDD---- 394
L DE + LD +++I+ ++ IN GT V+ A +L +
Sbjct: 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEE---INRLGTTVLM----ATHDLELVNRMRHR 206
Query: 395 IILLSDGQIVYQGPRE 410
++ L DG++V R
Sbjct: 207 VLALEDGRLVRDESRG 222
|
Length = 223 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV-SGRVTYNGHDMGEFVPE 225
ILK V+ IK G + L+GP SGK+TL + G +V G + + G D+ + PE
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG--HPKYEVTEGEILFKGEDITDLPPE 72
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 13/101 (12%)
Query: 323 GISGGERKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL 381
G SGGE+KR ++++ P LA+ DE +GLD + + + +I+
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 382 LQPAPETYDLFDDII-----LLSDGQIVYQGPRELVLEFFE 417
Q L D I +L DG+IV G +EL LE +
Sbjct: 163 YQ------RLLDYIKPDRVHVLYDGRIVKSGDKELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-06
Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 25/212 (11%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQN 940
RP + ALMG +GAGK+TL+ L G +K +G+I G +E + S +N
Sbjct: 22 RPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFKSSKEALEN 73
Query: 941 DI---HSPFVTVYE-SLLYSAWL-RLPPE---VDSETRKMFIEEVMELVELKPLIQSLVG 992
I H V + S++ + WL R P + VD + KM+ + EL I
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQD--KMYRDTKAIFDELDIDIDPRAK 131
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
V+ LS Q + + IA N I+ MDEPTS L + + +R + G +V
Sbjct: 132 ---VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIV 188
Query: 1053 CTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084
H+ +IF DE+ ++ R GQ I PL
Sbjct: 189 YISHKME-EIFQLCDEITIL-RDGQWIATQPL 218
|
Length = 491 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 1e-06
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 21/182 (11%)
Query: 889 ALMGVSGAGKTTLMDVL--------SGRKTGG---YITGNI-TISGYPKKQETFARISGY 936
+MG SG+GK+TL+ VL S K G Y +I I ++E G
Sbjct: 40 GIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEV-----GM 94
Query: 937 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 996
Q P +++Y+++ Y L+ + K +EE + V L + + P
Sbjct: 95 VFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPA- 151
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
S LS Q++RLTIA L P ++ MDEPTS +D + + + + + +V H
Sbjct: 152 SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKNEIAIVIVSH 210
Query: 1057 QP 1058
P
Sbjct: 211 NP 212
|
Length = 257 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 57/251 (22%), Positives = 96/251 (38%), Gaps = 59/251 (23%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
+L D+S +K G + LGP +GKTT + + G + SG +T++G +
Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKN 67
Query: 223 --VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
R A I + +T RE L AR G+
Sbjct: 68 IEALRRIGALIEAPGFY-PNLTARENLRLLARLLGI--------------------RKKR 106
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
ID L V+GL+ + ++G S G ++R+ ++G
Sbjct: 107 IDE------------------VLDVVGLKD-----SAKKKVKGFSLGMKQRLGIALALLG 143
Query: 341 -PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV-IS--LLQPAPETYDLFDDII 396
P L L +DE + GLD ++ + + G V IS LL E + D I
Sbjct: 144 NPDL-LILDEPTNGLDPDGIKELRELI--LSLRDQGITVLISSHLLS---EIQKVADRIG 197
Query: 397 LLSDGQIVYQG 407
+++ G+++ +G
Sbjct: 198 IINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 62/194 (31%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
+ +L+D++ ++ G +LGP GK+TLL +AG + SG V +G + P
Sbjct: 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGP 72
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+ Y+ Q D + +TV + +A +G
Sbjct: 73 DI--GYVFQEDALLPWLTVLDNVALGLELRGKSKA------------------------- 105
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
EA L+++GL D +SGG R+RV A+A
Sbjct: 106 ---------EARERAKELLELVGLAGFEDKYPHQ-----LSGGMRQRV---------AIA 142
Query: 345 ---------LFMDE 349
L +DE
Sbjct: 143 RALATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+ ++S + PG + LLGP +GKTT + G L+ + G +T+NG + + +
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
R Y+ + +MTV + L + A +G+
Sbjct: 73 RI-GYLPEERGLYPKMTVEDQLKYLAELKGM 102
|
Length = 300 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLL--LALAGKLDSSLKVSGRVTYNGHD- 218
KH LKD++ I ++T L+GP GK+TLL L L +V G V +G +
Sbjct: 19 DKH--ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI 76
Query: 219 --MGEFVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
V E R + Q N M++ + +A+ R G+
Sbjct: 77 YDPKVDVVELRRRVGMVFQKPNPF-PMSIYDNVAYGLRLHGI 117
|
Length = 253 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-06
Identities = 59/248 (23%), Positives = 100/248 (40%), Gaps = 49/248 (19%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
LK V+ + PG + LLG +GK+TL+ L+G + + G +T N + + +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLA 77
Query: 228 A----AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID- 282
A I Q + I E+TV E L + R LT + G+ ID
Sbjct: 78 AQLGIGIIYQELSVIDELTVLENL-YIGR---------HLT-----KKVCGV---NIIDW 119
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
M+ A L +GL+V D V + +S ++ + + ++ A
Sbjct: 120 REMRVRAAM----------MLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDA 164
Query: 343 LALFMDEISTGLDSSTT---FQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399
+ MDE ++ L + F I+N L+ GTA++ + E + D ++
Sbjct: 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLR-----KEGTAIVYISHKLAEIRRICDRYTVMK 219
Query: 400 DGQIVYQG 407
DG V G
Sbjct: 220 DGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 55/240 (22%), Positives = 96/240 (40%), Gaps = 47/240 (19%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
L+D++ ++ G + ++LGP GKTTLL +AG + G +T +G + ER
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAER 72
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
+ Q++ + V++ +AF + GV +R A
Sbjct: 73 GVVF--QNEGLLPWRNVQDNVAFGLQLAGVEK--------MQRLEIA------------- 109
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
+ LK +GLE I +SGG+R+RV + L
Sbjct: 110 ------HQM-------LKKVGLE-----GAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
Query: 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS--DGQIV 404
+DE LD+ T Q+ L + +G V+ + E + +++LLS G++V
Sbjct: 152 LDEPFGALDAFTREQMQTLLLKLWQ-ETGKQVLLITHDIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-06
Identities = 70/258 (27%), Positives = 110/258 (42%), Gaps = 46/258 (17%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
IL D+S IK T ++G SGK+TL L G + SG + NG + + +R
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDI--DR 543
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
+ Q N++ + E FS GS E L G K + D
Sbjct: 544 HT--LRQFINYLPQ----EPYIFS------GSILENLL--------LGAKENVSQDEIWA 583
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
A A + D LG T + +E ISGG+++R+ ++ + L
Sbjct: 584 ACEI----AEIKDDIENMPLGY----QTELSEEG-SSISGGQKQRIALARALLTDSKVLI 634
Query: 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTA--VISLLQPAPETYDLFDDIILLSDGQIV 404
+DE ++ LD+ T +IVN L +++ T V L A ++ D II+L G+I+
Sbjct: 635 LDESTSNLDTITEKKIVNNL---LNLQDKTIIFVAHRLSVAKQS----DKIIVLDHGKII 687
Query: 405 YQGP-RELVLE--FFESM 419
QG EL+ F+ S+
Sbjct: 688 EQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 29/182 (15%)
Query: 865 QGVLE---DKLVLLNGLSGAFRPGVLTALMGVSGAGKTT----LMDVLSGRKTGGYITGN 917
+G+L+ D V++ +S RPG L+G SG+GK+T L+ +++ + G
Sbjct: 289 KGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GE 341
Query: 918 ITISGYPKKQETFARISGYCEQNDIHSPFVTVYESL--------LYSAWLRL-PPEVDSE 968
I G P R ++ I F SL + LR+ P + +
Sbjct: 342 IWFDGQPLHN--LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA 399
Query: 969 TRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028
R+ + VME V L P ++ P + S QR+R+ IA L+ PS+I +DEPTS
Sbjct: 400 QREQQVIAVMEEVGLDP--ETRHRYP--AEFSGGQRQRIAIARALILKPSLIILDEPTSS 455
Query: 1029 LD 1030
LD
Sbjct: 456 LD 457
|
Length = 529 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDI 1062
++RL IA LV +P ++FMDEPT GLD A ++ +R V + G VV H +
Sbjct: 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVAR 216
Query: 1063 FDAFDELFLMKRG 1075
A L +MK+G
Sbjct: 217 LLA-HRLLVMKQG 228
|
Length = 258 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 44/205 (21%), Positives = 70/205 (34%), Gaps = 47/205 (22%)
Query: 175 IKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQH 234
+ G L+ G +GKTTLL LAG L SG++ +G R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLG-- 88
Query: 235 DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAI-ATEGQ 293
H+ G+K D + + G+
Sbjct: 89 --HLP----------------------------------GLKADLSTLENLHFLCGLHGR 112
Query: 294 EANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTG 353
A + L ++GL DT+V R +S G++KR+ + + PA +DE
Sbjct: 113 RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167
Query: 354 LDSSTTFQIVNCLKQHVHINSGTAV 378
LD + + H+ V
Sbjct: 168 LDLEGITLVNRMISAHLRGGGAALV 192
|
Length = 214 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 35/181 (19%)
Query: 872 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ- 927
L+ +N ++ R + +L+G +GAGKTT+ + L+G + TGG I I G P Q
Sbjct: 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
Query: 928 ------ETFARISGYCEQNDIHSPFVTVYESLL-----------YSAWLRLPPEVDSETR 970
TF + + E +TV E+LL +S L+ P +E+
Sbjct: 78 ARMGVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE 129
Query: 971 KM-FIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
+ +E V L G L+ Q++RL IA +V P I+ +DEP +GL
Sbjct: 130 ALDRAATWLERVGLLEHANRQAG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGL 184
Query: 1030 D 1030
+
Sbjct: 185 N 185
|
Length = 255 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 3e-06
Identities = 54/195 (27%), Positives = 76/195 (38%), Gaps = 52/195 (26%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
++ D+S I G LLGP +GK+T+ L G + G++T +GE VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSR 71
Query: 227 TAA------YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
+ Q DN E TVRE L R G ++ RE EA I
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG----------MSTREIEAVIPS--- 118
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
L+ LE AD V +SGG ++R+T ++
Sbjct: 119 ---------------------LLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 341 PALALFMDEISTGLD 355
L +DE +TGLD
Sbjct: 153 DPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 66/259 (25%), Positives = 112/259 (43%), Gaps = 67/259 (25%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL---DSSLKVSGR-VTYNGHDMGEFV 223
LK ++ + G M LLGP +GK+TL L G L + + G + Y+ + E
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV- 76
Query: 224 PERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+T + Q+ D+ + TV E +AF G+ E+ +R EA
Sbjct: 77 -RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA--------- 121
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT-TGEMMVGP 341
+KA+ EG E ++ +SGG++KRV G + + P
Sbjct: 122 --LKAVGMEGFE-----------------------NKPPHHLSGGQKKRVAIAGILAMKP 156
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG--TAVISLLQPAPETYDL------FD 393
+ + +DE ++GLD QI+ L +N T +IS T+D+ D
Sbjct: 157 EI-IVLDEPTSGLDPMGASQIMKLLYD---LNKEGITIIIS-------THDVDLVPVYAD 205
Query: 394 DIILLSDGQIVYQG-PREL 411
+ ++SDG+I+ +G P+E+
Sbjct: 206 KVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 56/205 (27%), Positives = 80/205 (39%), Gaps = 41/205 (20%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
L+IL V ++K G L+G SGK+TLL LAG D S SG V+ G + +
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDE 79
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN---EAGIKPDPDI 281
E A ++H + F V + L+ L EN A ++ +
Sbjct: 80 EARAKLRAKH------------VGF------VFQSFMLIPTLNALENVELPALLRGESSR 121
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
A A L+ LGL D + +SGGE++RV G
Sbjct: 122 QSRNGAKA------------LLEQLGLGKRLDHLPAQ-----LSGGEQQRVALARAFNGR 164
Query: 342 ALALFMDEISTGLDSSTTFQIVNCL 366
LF DE + LD T +I + L
Sbjct: 165 PDVLFADEPTGNLDRQTGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-06
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 25/166 (15%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 934
++ L G L+G SG GKTT++ +++G +T +G I + G + +
Sbjct: 30 ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVP 82
Query: 935 GYCEQNDIHS--------PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 986
E +++ P +TV+E++ + ++ P + R + E + +V+L+
Sbjct: 83 A--ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPR---VMEALRMVQLEEF 137
Query: 987 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
Q LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 138 AQR-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 56/259 (21%), Positives = 93/259 (35%), Gaps = 68/259 (26%)
Query: 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTA-- 228
+S ++ G + L+GP +GK+TLL +AG L SG + + G + + A
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARH 70
Query: 229 -AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKA 287
AY+SQ M V + L ++
Sbjct: 71 RAYLSQQQTPPFAMPVFQYLT----------------------------------LHQPD 96
Query: 288 IATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI---SGGE--RKRVTTGEMMVGPA 342
A+ + EV + D++ R + SGGE R R+ + V P
Sbjct: 97 KTRTEAVASALN---------EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147
Query: 343 L-----ALFMDEISTGLD---SSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394
+ L +DE LD + ++++ L Q G AV+ T D
Sbjct: 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-----QGIAVVMSSHDLNHTLRHADR 202
Query: 395 IILLSDGQIVYQGPRELVL 413
+ LL G+++ G R+ VL
Sbjct: 203 VWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 3e-06
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 29/153 (18%)
Query: 888 TALMGVSGAGKTTLMDVLSG--RKTGGYITGN--------ITISGYPKKQETFARISGYC 937
TA+ G SGAGKT+L++ +SG R G I N I P+K+ RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR----RI-GYV 81
Query: 938 EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997
Q+ P V +L Y + F ++++ L+ ++PL L P
Sbjct: 82 FQDARLFPHYKVRGNLRYG--------MAKSMVAQF-DKIVALLGIEPL---LDRYP--G 127
Query: 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 50/212 (23%), Positives = 85/212 (40%), Gaps = 56/212 (26%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI--TGNITISGYP-- 924
E + +L LS + G AL+G SG+GK+TL+ +L TG G IT+ G P
Sbjct: 12 EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLL----TGDLKPQQGEITLDGVPVS 67
Query: 925 KKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 984
++ + + Q P+ L+ LR
Sbjct: 68 DLEKALSSLISVLNQ----RPY-------LFDTTLR------------------------ 92
Query: 985 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
+ +G S +R+RL +A L+ + I+ +DEPT GLD ++ +
Sbjct: 93 ----NNLGRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE- 143
Query: 1045 VDTGRTVV-CTIHQPGIDIFDAFDELFLMKRG 1075
V +T++ T H GI + D++ ++ G
Sbjct: 144 VLKDKTLIWITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYP------KK 926
LN +S + + G AL+G SG GK+TL +L G + G N++ G P +
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG----NVSWRGEPLAKLNRAQ 83
Query: 927 QETFARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 984
++ F R Q+ I + P TV E + LR +D R E++ V+L
Sbjct: 84 RKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 985 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+ P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 142 DSVLD--KRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 37/187 (19%), Positives = 77/187 (41%), Gaps = 26/187 (13%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI 942
R G + L+G +G GK+T + +L+G+ + N+ G + I +++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGK-----LKPNL---GKFDDPPDWDEILDEFRGSEL 75
Query: 943 HSPFVTVYESLLYSAWL-----RLPPEVDSETRKM--------FIEEVMELVELKPLIQS 989
+ F + E + +P V + ++ ++E+++ +EL+ ++
Sbjct: 76 QNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR 135
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
+ LS + +R+ IA L + F DEP+S LD + R +R +
Sbjct: 136 -----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN 190
Query: 1050 TVVCTIH 1056
V+ H
Sbjct: 191 YVLVVEH 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 67/252 (26%), Positives = 105/252 (41%), Gaps = 45/252 (17%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
L +S + G A++G +G+GK+TL +L+G G IT+ G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 933 IS---GYCEQNDIHSP---FV--TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 984
+ G QN P FV TV + + + E R+ +E V + +
Sbjct: 79 VRRQVGMVFQN----PDNQFVGATVQDDVAFGL------ENIGVPREEMVERVDQALRQV 128
Query: 985 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
+ L P LS Q++R+ IA L P II +DE TS LD R V+ TVR
Sbjct: 129 GMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQL 186
Query: 1045 VDTGR-TVVCTIHQPGIDIFDAF--DELFLMKRGG-------QEIYVGPLGRHSCQLISY 1094
+ TV+ H D+ +A D + +M +G +EI+ + L
Sbjct: 187 KEQKGITVLSITH----DLDEAAQADRVIVMNKGEILEEGTPEEIF-----KSGHMLQEI 237
Query: 1095 FEAIPGVEKIKD 1106
+P K+K+
Sbjct: 238 GLDVPFSVKLKE 249
|
Length = 279 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 4e-06
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 23/187 (12%)
Query: 878 LSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET---FARIS 934
L+ F +TA +G +GAGKTT + +L+G +G + + G K ET R S
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGG--KDIETNLDAVRQS 1004
Query: 935 -GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 993
G C Q++I +TV E +L+ A L+ E ++ +E ++E L
Sbjct: 1005 LGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNE---- 1057
Query: 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRT 1050
LS +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT
Sbjct: 1058 -EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRT 1112
Query: 1051 VVCTIHQ 1057
++ + H
Sbjct: 1113 IIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 55/173 (31%), Positives = 82/173 (47%), Gaps = 41/173 (23%)
Query: 888 TALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISG---YPKKQ---ETFARIS 934
TA +G SG GK+T + D + G + +TG IT+ G Y + E AR+
Sbjct: 48 TAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDIYDPRLDVVELRARV- 102
Query: 935 GYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETR-KMFIEEVME--------LVELK 984
G Q +PF ++YE++ Y P + R K ++E++E E+K
Sbjct: 103 GMVFQKP--NPFPKSIYENVAYG------PRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 985 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
+ PG +GLS Q++RL IA + +P +I MDEP S LD A A V
Sbjct: 155 DRLHE----PG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 4e-06
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 34/163 (20%)
Query: 887 LTALMGVSGAGKTTLMDVLS-------GRKTGG---YITGNITISGYPKKQETFARISGY 936
+TA++G SG GK+T + L+ KT G Y NI Y +E +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 937 CEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV--------ELKPLI 987
++ + PF ++Y+++ Y P++ K ++E++E ELK +
Sbjct: 111 FQKPN---PFPKSIYDNVTYG------PKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL 161
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 162 HD-----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 4e-06
Identities = 50/179 (27%), Positives = 70/179 (39%), Gaps = 36/179 (20%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 927
D L ++G+S R G L+G SG+GK+TL L G I G +K+
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKE 357
Query: 928 ETFARISGYCEQNDIHSPFVTVYESL--------LYSAWLRL--PPEVDSETRKMFIEEV 977
R + F Y SL + LR+ P +E + IE +
Sbjct: 358 MRPLR-------RRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410
Query: 978 MELVELKPLIQSLVGLPGVS------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
E VGL + S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 411 EE-----------VGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 24/186 (12%)
Query: 881 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR--ISGYCE 938
G + A++G SGAGK+TL+++++G +T +G I I+G A +S +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 939 QNDIHSPFVTVYES--LLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 996
+N++ + +TV ++ L S L+L ++E R+ +E V L ++ L PG
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKL----NAEQREK-VEAAAAQVGLAGFLKRL---PGE 129
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRTVV 1052
LS QR+R+ +A LV I+ +DEP S LD RA M + + + + T++
Sbjct: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTLL 184
Query: 1053 CTIHQP 1058
H P
Sbjct: 185 MVTHHP 190
|
Length = 231 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 5e-06
Identities = 71/287 (24%), Positives = 121/287 (42%), Gaps = 75/287 (26%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMGE 221
+LK +S ++ G + +++GP SGK+TLL L G + D SG +T +G D+G
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD-----SGSITVDGEDVG- 67
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYEL---LTELARREN--EAGIK 276
I ++ R + V ++ L LT L EN A
Sbjct: 68 ------------DKKDILKL--RRKVGM------VFQQFNLFPHLTVL---ENVTLA--- 101
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
P +K EA L+ +GL AD +SGG+++RV
Sbjct: 102 P-------VKVKKLSKAEAREKALELLEKVGLADKADAYPA-----QLSGGQQQRVAIAR 149
Query: 337 -MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-F-- 392
+ + P + LF DE ++ LD ++++ +K G +I + T+++ F
Sbjct: 150 ALAMDPKVMLF-DEPTSALDPELVGEVLDVMKDLA--EEGMTMIIV------THEMGFAR 200
Query: 393 ---DDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
D +I + G+I+ +GP E EFF++ PK + FL ++
Sbjct: 201 EVADRVIFMDQGKIIEEGPPE---EFFDN-----PKSERTRQFLSKI 239
|
Length = 240 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 61/223 (27%), Positives = 85/223 (38%), Gaps = 50/223 (22%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221
+L +VS I G M ++G SGK+TLL L G LD+ SG V +NG M +
Sbjct: 19 SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG-LDTP--TSGDVIFNGQPMSK 75
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA------GI 275
A E+ ++ L F + + LL + EN A
Sbjct: 76 LSSAAKA-----------ELRNQK-LGF------IYQFHHLLPDFTALENVAMPLLIGKK 117
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG 335
KP E N L +GLE A+ + +SGGER+RV
Sbjct: 118 KP---------------AEINSRALEMLAAVGLEHRANHRPSE-----LSGGERQRVAIA 157
Query: 336 EMMVG-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA 377
+V P L L DE + LD+ I L ++ GTA
Sbjct: 158 RALVNNPRLVL-ADEPTGNLDARNADSIFQLL-GELNRLQGTA 198
|
Length = 233 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 68/261 (26%), Positives = 108/261 (41%), Gaps = 57/261 (21%)
Query: 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD--------MG 220
+DVS + PG + ++G SGKTTLL ++G+L +G VTY D M
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTMS 79
Query: 221 EFVPERTA------AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
E ER ++ Q+ M V R +G+R+
Sbjct: 80 E--AERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH-------------- 123
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
Y I E Q+ +L+ EV D D++ R SGG ++R+
Sbjct: 124 ---------YGN-IRAEAQD-------WLE----EVEIDLDRIDDLPRTFSGGMQQRLQI 162
Query: 335 GEMMV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393
+V P L +FMDE + GLD S ++++ L+ V G AV+ + L D
Sbjct: 163 ARNLVTRPRL-VFMDEPTGGLDVSVQARLLDLLRGLVR-ELGLAVVIVTHDLAVARLLAD 220
Query: 394 DIILLSDGQIVYQGPRELVLE 414
++++ GQ+V G + VL+
Sbjct: 221 RLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 5e-06
Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 34/197 (17%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
L GL+ PG + AL+G SG+GK+T+ +L + TGG + + G P Q
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPLVQ----- 547
Query: 933 ISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEVDSETRKMFIEEVMELV---------- 981
+ + +H V E +L+S +R + EE+M
Sbjct: 548 ----YDHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIM 601
Query: 982 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
E + VG G S LS Q++R+ IA LV P ++ +DE TS LDA + +
Sbjct: 602 EFPNGYDTEVGEKG-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQLL 656
Query: 1042 RNTVDT-GRTVVCTIHQ 1057
+ + RTV+ H+
Sbjct: 657 QESRSRASRTVLLIAHR 673
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 6e-06
Identities = 52/195 (26%), Positives = 76/195 (38%), Gaps = 52/195 (26%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
++ +S + G LLGP +GK+T+ + G +G++T +G VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITV----LGVPVPAR 108
Query: 227 TAA------YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
+ Q DN E TVRE L V RY ++ RE EA I
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENLL-------VFGRY---FGMSTREIEAVIPS--- 155
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
L+ LE AD V D +SGG ++R+T ++
Sbjct: 156 ---------------------LLEFARLESKADARVSD-----LSGGMKRRLTLARALIN 189
Query: 341 PALALFMDEISTGLD 355
L +DE +TGLD
Sbjct: 190 DPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 53/254 (20%), Positives = 98/254 (38%), Gaps = 44/254 (17%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNGHDMGE---- 221
+K+V+ ++ G + L+GP GKTT L A+ L +V+GR+ +G D+
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 222 -FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
R + Q N M+V + + + G+ R L+ E+A R D +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLM-EVAERSLRGAALWD-E 137
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
+ +K AT G+SGG+++R+ +
Sbjct: 138 VKDRLKTPAT--------------------------------GLSGGQQQRLCIARALAV 165
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE ++ LD ++T +I + + + T +I + + + D
Sbjct: 166 EPEILLMDEPTSALDPASTARIEDLMTD---LKKVTTIIIVTHNMHQAARVSDTTSFFLV 222
Query: 401 GQIVYQGPRELVLE 414
G +V GP + +
Sbjct: 223 GDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-06
Identities = 62/250 (24%), Positives = 93/250 (37%), Gaps = 65/250 (26%)
Query: 177 PGR-MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG---HDM--GEFVP--ERTA 228
P R +T L GP SGKT+L+ +AG GR+ NG D G F+P +R
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRI 78
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAI 288
Y+ Q TVR L + M
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYG----------------------------------MWKS 104
Query: 289 ATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE-MMVGPALALFM 347
D + +LG+E D G +SGGE++RV G ++ P L L M
Sbjct: 105 MRAQ------FDQLVALLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAPEL-LLM 152
Query: 348 DEISTGLDSSTTFQIVNCLK---QHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
DE LD +I+ L+ ++I ++ + E L D +++L +G++
Sbjct: 153 DEPLASLDLPRKREILPYLERLRDEINI----PILYVSHSLDEVLRLADRVVVLENGKVK 208
Query: 405 YQGPRELVLE 414
GP E V
Sbjct: 209 ASGPLEEVWG 218
|
Length = 352 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 6e-06
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 16/166 (9%)
Query: 871 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM---DVLSGRKTGGYITGNITISGYPKKQ 927
+ LN +S G + ++G SGAGK+TL+ ++L +G I ++ +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 928 ETFARIS-GYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 984
T AR G Q N + S TV+ ++ LP E+D+ + +V EL+ L
Sbjct: 77 LTKARRQIGMIFQHFNLLSSR--TVFGNV------ALPLELDNTPKDEIKRKVTELLALV 128
Query: 985 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
L P S LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 129 GLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 6e-06
Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 32/211 (15%)
Query: 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG 907
FD+V +S D QGV +S +PG A++G +GAGK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGV--------EDVSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 908 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLY----SAWLRL-- 961
++ +G I I G I + + V ++ L+ +R+
Sbjct: 382 QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 962 PPEVDSETRKMF-IEEVMELVELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1019
P D E R + + +E KP ++VG G LS +R+RL IA L+ +P I
Sbjct: 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPI 492
Query: 1020 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
+ +DE TS LD A V + + + GRT
Sbjct: 493 LILDEATSALDVETEAKVKAAL-DELMKGRT 522
|
Length = 588 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 7e-06
Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNIT-ISGYPKKQETF 930
+LN +S G + AL+G SG+GKTTL+ +++G +T G+I + T +S +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 931 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
R G+ Q+ +TV++++ + L + P + +V +L+E+ L
Sbjct: 74 -RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
P + LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 131 DRYP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 12/193 (6%)
Query: 871 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM---DVLSGRKTGGYITGNITISGYPKKQ 927
+L+ + G + ++G SG+GK+TL+ + L +G I + ++ PK
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVD 71
Query: 928 ETFARI-SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 986
E R +G Q P +T E++++ P V +++ ++ EL+ L
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFG-----PLRVRGASKEEAEKQARELLAKVGL 126
Query: 987 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
+ P S LS Q++R+ IA L P ++ DEPTS LD V++ +++ +
Sbjct: 127 AERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE 184
Query: 1047 TGRTVVCTIHQPG 1059
G T+V H+ G
Sbjct: 185 EGMTMVIVTHEIG 197
|
Length = 240 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 8e-06
Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 9/174 (5%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK----QETF 930
L+G+ RPG L G +GAGK+TLM +LSG G G I SG P K ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 931 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQS 989
Q P ++V E++ + LP + + + ++ ++L +
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
V Q++ + IA L ++ +DEP+S L + I++ +R+
Sbjct: 137 R----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 8e-06
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 17/206 (8%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
L ++ + G ++G +G+GK+TL L+G R G + + +G K + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 933 ISGYCEQNDIHSPFV--TVYESLLYSAW-LRLPPEVDSETRKMFIEEVMELVELKPLIQS 989
+ G QN + FV TV E L + L LPP E RK + E+ K +S
Sbjct: 78 LVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPP---IEIRKRVDRALAEIGLEKYRHRS 133
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
L G G + + +A L P + DE TS LD + V+ ++ + G+
Sbjct: 134 PKTLSGGQG------QCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 1050 TVVCTIHQPGIDIFDAFDELFLMKRG 1075
T+V H ++ D + +M RG
Sbjct: 188 TIVYITHN--LEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 9e-06
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 154 YLGILPSRKK--HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGR 211
YL I RK+ T LKD+S +K G LLGP GKTTLL +AG L+ + +G
Sbjct: 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LE--RQTAGT 60
Query: 212 VTYNGHDMGEFVPER 226
+ G D+ P++
Sbjct: 61 IYQGGRDITRLPPQK 75
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1057
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 64/249 (25%), Positives = 98/249 (39%), Gaps = 43/249 (17%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV--SGRVTYNGHDMGEFVP 224
+L +++ IKPG ++GP SGK+TL KL L G+V +G D+ P
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTL-----TKLLQRLYTPQHGQVLVDGVDLAIADP 526
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+R R GV + +L + R+N A P +
Sbjct: 527 ----------------AWLR-------RQMGVVLQENVLFSRSIRDNIALCNPGAPFEHV 563
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
+ A G + L +T VG E +SGG+R+R+ +VG
Sbjct: 564 IHAAKLAGAHDFIS--------ELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRI 614
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L DE ++ LD + I+ +++ I G VI + T D II+L GQI
Sbjct: 615 LIFDEATSALDYESEALIMRNMRE---ICRGRTVIIIAHRL-STVRACDRIIVLEKGQIA 670
Query: 405 YQGPRELVL 413
G E +L
Sbjct: 671 ESGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 46/224 (20%), Positives = 74/224 (33%), Gaps = 51/224 (22%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
+ +S + G + GP SGKTTLL LAG S ++GRV NG +
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG---LSPPLAGRVLLNGGPLDFQRD 69
Query: 225 E--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
R Y+ ++V E L F S ++ LAR
Sbjct: 70 SIARGLLYLGHAPGIKTTLSVLENLRFWHA---DHSDEQVEEALAR-------------- 112
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+GL D + +S G+++RV +++
Sbjct: 113 -----------------------VGL-----NGFEDRPVAQLSAGQQRRVALARLLLSGR 144
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP 386
+DE +T LD + + + H G V++ Q
Sbjct: 145 PLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDLG 187
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 65/282 (23%), Positives = 115/282 (40%), Gaps = 46/282 (16%)
Query: 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTL---LLALAGKLDSSLKVSGRVTYNGH 217
R LT+L ++ + G L+GP SGK+T+ L+ L + ++V G Y+
Sbjct: 9 RFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMP 68
Query: 218 D-MGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIK 276
G VP ++ Q N IG M + F + + EA
Sbjct: 69 GRNGPLVPA-DEKHLRQMRNKIG-MVFQSFNLFPHKT------------VLDNVTEA--- 111
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
V + +A E + L ++GL AD M +SGG+++RV
Sbjct: 112 -----PVLVLGMARAEAEKRAME--LLDMVGLADKADHMPAQ-----LSGGQQQRVAIAR 159
Query: 337 -MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
+ + P + LF DE+++ LD +++N +++ + T ++ + + D +
Sbjct: 160 ALAMRPKVMLF-DEVTSALDPELVGEVLNVIRRLASEHDLTMLL-VTHEMGFAREFADRV 217
Query: 396 ILLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
G+IV QG P E+ F+ PK + +FL +V
Sbjct: 218 CFFDKGRIVEQGKPDEI---------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 19/165 (11%)
Query: 878 LSGAFRPGVLTALMGVSGAGKTTLMDVL--------SGRKTGGYITGNITISGYPKKQE- 928
+S F +TA++G SG GK+T++ + S R TG + + I Y + +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI--YDRGVDP 80
Query: 929 -TFARISGYCEQNDIHSPFVTVYESLL--YSAWLRLPPEVDSETRKMFIEEVMELVELKP 985
+ R G Q P +++Y++++ Y R+ E + ++ V E+K
Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD 140
Query: 986 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
++S LS Q++RL IA + P +I MDEP S LD
Sbjct: 141 RLKS-----NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (115), Expect = 1e-05
Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 13/189 (6%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSG-RKTGGYITGNITISGYPK 925
+L+ +S F +T+LMG +G+GKTT + D +SG R +G + G +I Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 985
E F R G Q P + L +L P E R + + E+
Sbjct: 96 VLE-FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR--KEFRGVAQARLTEVGLWDA 152
Query: 986 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
+ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 153 VKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 1046 DTGRTVVCT 1054
D ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 55/253 (21%)
Query: 846 SLTFDEV--VYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMD 903
++ FD V Y P E + ++ ++ F G A++G +G+GK+TL+
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQA----------IHDVNTEFEQGKYYAIVGQTGSGKSTLIQ 51
Query: 904 VLSG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSPFVTVY---ESLLYSA 957
++ + T G +T +ITI+ K ++ + R + V+ ES L+
Sbjct: 52 NINALLKPTTGTVTVDDITITH--KTKDKYIR--------PVRKRIGMVFQFPESQLFED 101
Query: 958 WLRLPPEVDSETRKMFIEEV--------MEL------VELKPLIQSLVGLPGVSGLSTEQ 1003
+ + KM ++EV M+L + P +S Q
Sbjct: 102 TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPF-----------QMSGGQ 150
Query: 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPGIDI 1062
+++ I L NP II +DEPT+GLD ++ VMR +++ D +T++ H ++
Sbjct: 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EV 209
Query: 1063 FDAFDELFLMKRG 1075
DE+ +MK G
Sbjct: 210 ARYADEVIVMKEG 222
|
Length = 286 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 27/224 (12%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNI-------TISGYPK 925
++ +S + G + ++G SGAGKTTL +++G T G + + T G P
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG-PD 358
Query: 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 985
+ R G Q P TV ++L + L LP E+ K I M + +
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL--ARMKAVITLKMVGFDEEK 416
Query: 986 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
+ L P LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 417 AEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSI 470
Query: 1046 -----DTGRTVVCTIHQPGID-IFDAFDELFLMKRGGQEIYVGP 1083
+ +T + H +D + D D LM R G+ + +G
Sbjct: 471 LKAREEMEQTFIIVSHD--MDFVLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 64/225 (28%), Positives = 91/225 (40%), Gaps = 41/225 (18%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
ILKD+S PG +LG +GK+TLL +AG +D +NG P
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG-VDKE--------FNGEAR--PAPG 67
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIK-PDPDIDVY 284
Y+ Q TVRE + +GV + L NE K +PD D
Sbjct: 68 IKVGYLPQEPQLDPTKTVRENVE-----EGVAEIKDALDRF----NEISAKFAEPDAD-- 116
Query: 285 MKAIATEGQEANVITDYYLKVLG-------LEVCADTM---VGDEMIRGISGGERKRVTT 334
M A+ E E I D LE+ D + D + +SGGER+RV
Sbjct: 117 MDALLAEQAELQEIID----AADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVAL 172
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
+++ L +DE + LD+ + V L+QH+ GT V
Sbjct: 173 CRLLLSKPDMLLLDEPTNHLDAES----VAWLEQHLQEYPGTVVA 213
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 59/252 (23%)
Query: 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHDMGE-FVPERT 227
D++ +K G + L+G SGK+ LA+ G L L + SG + +G + + R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKA 287
A I Q N T+ A E L L + +A +A
Sbjct: 64 IATIMQ--NPRTAFNPLFTMGNHAI--------ETLRSLGKLSKQA------------RA 101
Query: 288 IATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA--- 344
+ E EA +GL + + + +SGG +R +M+ AL
Sbjct: 102 LILEALEA----------VGLPDPEEVL--KKYPFQLSGGMLQR-----VMIALALLLEP 144
Query: 345 --LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL------FDDII 396
L DE +T LD +++ L++ + GT ++ + T+DL D++
Sbjct: 145 PFLIADEPTTDLDVVNQARVLKLLRELRQLF-GTGILLI------THDLGVVARIADEVA 197
Query: 397 LLSDGQIVYQGP 408
++ DG+IV +G
Sbjct: 198 VMDDGRIVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 2e-05
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 28/116 (24%)
Query: 303 LKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA-----LFMDEISTGLDSS 357
L++LGL AD + +SGGER+RV ++ ALA L +DE ++ LD +
Sbjct: 82 LELLGLAHLADRPFNE-----LSGGERQRV-----LLARALAQEPPILLLDEPTSHLDIA 131
Query: 358 TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL------FDDIILLSDGQIVYQG 407
+++ L++ T V+ L +DL D +ILL DG+IV QG
Sbjct: 132 HQIELLELLRRLARERGKTVVMVL-------HDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 61/258 (23%), Positives = 103/258 (39%), Gaps = 57/258 (22%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+L V ++ G + L+GP +GKTTLL A+ G L + +G V G D V
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDD----VEA 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID--V 283
+A S+ + + T +L+F + V E+ R + + + D
Sbjct: 70 LSARAASRRVASVPQDT---SLSFEFDVRQV-------VEMGRTPHRSRFDTWTETDRAA 119
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
+A+ G D + +SGGER+RV ++ AL
Sbjct: 120 VERAMERTGVAQFA--------------------DRPVTSLSGGERQRV-----LLARAL 154
Query: 344 A-----LFMDEISTGLD---SSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
A L +DE + LD T ++V L ++ G ++ + D++
Sbjct: 155 AQATPVLLLDEPTASLDINHQVRTLELVRRL-----VDDGKTAVAAIHDLDLAARYCDEL 209
Query: 396 ILLSDGQIVYQGPRELVL 413
+LL+DG++ GP VL
Sbjct: 210 VLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 23/101 (22%)
Query: 325 SGGERKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
SGG R+RV M+ ALA L DE +T LD + QI++ LK + GTA+I
Sbjct: 155 SGGMRQRV-----MIAMALALNPKLLIADEPTTALDVTVQAQILDLLK-ELQREKGTALI 208
Query: 380 SLLQPAPETYDL------FDDIILLSDGQIVYQGPRELVLE 414
+ T+DL D + ++ G+IV +GP E + +
Sbjct: 209 LI------THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 66/248 (26%), Positives = 98/248 (39%), Gaps = 66/248 (26%)
Query: 177 PGRMTLLLGPPASGKTTLL---LALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQ 233
G + LLGP +GKTTLL L L ++KV+G G +VP+R
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR------- 57
Query: 234 H----DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIA 289
H D I +V T+ S R +G RR A
Sbjct: 58 HEFAWDFPI---SVAHTV-MSGRTGHIG--------WLRRPCVADFAA------------ 93
Query: 290 TEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA----- 344
L+ +GL AD VG+ +SGG+R+RV +V ALA
Sbjct: 94 ---------VRDALRRVGLTELADRPVGE-----LSGGQRQRV-----LVARALATRPSV 134
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE TGLD T + + +GTA++ + D ++LL +G+++
Sbjct: 135 LLLDEPFTGLDMPTQELLTELFIELA--GAGTAILMTTHDLAQAMATCDRVVLL-NGRVI 191
Query: 405 YQG-PREL 411
G P++L
Sbjct: 192 ADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 63/264 (23%), Positives = 102/264 (38%), Gaps = 76/264 (28%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
LK +S I G T LLGP +GK+TLLL L G L GRV MG V
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG---IYLPQRGRVKV----MGREVNAEN 73
Query: 228 AAYISQH--------DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
++ D+ + TV + +AF G+ E+ RR EA
Sbjct: 74 EKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-----EVERRVEEA------ 122
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT-TGEMM 338
LK + + D+ +S G++KRV G +
Sbjct: 123 -----------------------LKAVRMWDFR-----DKPPYHLSYGQKKRVAIAGVLA 154
Query: 339 VGPALALFMDEISTGLDSS---TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL---- 391
+ P + + +DE LD T +I++ L H T +++ T+D+
Sbjct: 155 MDPDV-IVLDEPMAYLDPRGQETLMEILDRL----HNQGKTVIVA-------THDVDLAA 202
Query: 392 --FDDIILLSDGQIVYQGPRELVL 413
D +I+L +G+++ +G + L+
Sbjct: 203 EWADQVIVLKEGRVLAEGDKSLLT 226
|
Length = 274 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 885 GVLTALMGVSGAGKTTLMDVLSGRKT--GGYITGN-ITISGYPKKQETFARISGYCEQND 941
G + A+MG SGAGK+TL+++++G G I N + +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 942 IHSPFVTVYESLLYSAWLRLPPEVD-SETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000
+TV +++ L L P + + ++ + + + V + + L P LS
Sbjct: 82 F--AHLTVRQNI----GLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRL---PE--QLS 130
Query: 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQP 1058
QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 56/225 (24%), Positives = 96/225 (42%), Gaps = 27/225 (12%)
Query: 841 PFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTT 900
P EPH +V+ + + V+ ++ +S + R G + + G+ GAG+T
Sbjct: 247 PHEPH--EIGDVILEA---RNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTE 301
Query: 901 LMDVLSGRKTGGYITGNITISGYP-----KKQETFARISGYCEQNDIHS--PFVTVYESL 953
L+ L G G + GN+ I+G P Q A I+ E H P + V +++
Sbjct: 302 LVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI 360
Query: 954 LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV------GLPGVSGLSTEQRKRL 1007
S + S KM I+ EL + IQ L LP + LS +++
Sbjct: 361 TLSV-------LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-IGRLSGGNQQKA 412
Query: 1008 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
+A L+ NP ++ +DEPT G+D A + + + G ++
Sbjct: 413 VLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 28/206 (13%)
Query: 872 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG--------- 922
L +L+GL+ + G AL+G SG+GK+T++ +L + G I + G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70
Query: 923 ----YPKKQETFARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFI 974
P ++ ++ G Q+ P TV +++ + L L ++E R
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKR---- 126
Query: 975 EEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
MEL+++ L +P + LS Q++R+ IA L P ++ DE TS LD
Sbjct: 127 --AMELLDMVGLADKADHMP--AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELV 182
Query: 1035 AIVMRTVRN-TVDTGRTVVCTIHQPG 1059
V+ +R + T++ H+ G
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTHEMG 208
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 16/210 (7%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTT----LMDVLSGRKTGGYITGNITISGYPKKQET 929
L+ L+ + + G + AL+G SG+GK+ ++ +L T +G I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 930 F-ARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 986
R QN + P T+ + + + I E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARAL---ILEALEAVGLPDP 115
Query: 987 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1045
+ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 1046 DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
G ++ H G+ + DE+ +M G
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDDG 202
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 2e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1057
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 14/170 (8%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYIT-GNITISGYPKK 926
L+ +S F +TAL+G SG GK+T + D++ G + G I I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 927 QETFARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 985
R G Q +PF +++E++ Y LR+ D +E + L
Sbjct: 82 VVELRRRVGMVFQKP--NPFPKSIFENVAYG--LRVNGVKDKAYLAERVERSLRHAALWD 137
Query: 986 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
++ + + GLS Q++RL IA L P ++ MDEP S LD A
Sbjct: 138 EVKDRLHESAL-GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 52/232 (22%), Positives = 90/232 (38%), Gaps = 54/232 (23%)
Query: 852 VVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG 911
V Y+ D+P +L +S + G ++G +GAGK+TL +L+ +
Sbjct: 14 VRYAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFL 58
Query: 912 GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESL--------LYSAWLRLPP 963
G I I G + P + SL L+S +R
Sbjct: 59 EAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
Query: 964 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
+ E I + + E G LS QR+ L +A L+ P ++ +D
Sbjct: 103 DPFDEYSDEEIYGALRVSE------------GGLNLSQGQRQLLCLARALLKRPRVLVLD 150
Query: 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
E T+ +D A++ +T+R T T++ H+ I D +D++ +M G
Sbjct: 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 57/219 (26%), Positives = 89/219 (40%), Gaps = 39/219 (17%)
Query: 886 VLTALMGVSGAGKTTLM---DVLSGRKTGGYITGNITISG---YPKKQETFA--RISGYC 937
+ ALMG SG GK+TL+ + L + G + + G Y + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 938 EQNDIHSPFVTVYES----LLYSAWLRLPPEVDSETR-----KMFIEEVMELVELKPLIQ 988
Q P +T+Y++ + + ++ E+D +EV + + P
Sbjct: 91 FQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYP--- 147
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
S LS QR+RL IA L P I+ MDEPT+ +D A + + +
Sbjct: 148 --------SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKE 198
Query: 1049 RTVVCTIHQPG----IDIFDAFDELFLMKRGGQEIYVGP 1083
T+V H P + + AF L+L G+ I VGP
Sbjct: 199 YTIVLVTHSPAQAARVSDYVAF--LYL----GKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS---GRKTGGYITGNITISGYP--KKQET 929
L ++ + +TA++G SG GK+T + L+ +TG + +G K +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 930 FARIS---GYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 985
+ G Q +PF ++++++ Y R+ + + + +E+ ++ V L
Sbjct: 88 LVELRKNIGMVFQKG--NPFPQSIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALWD 143
Query: 986 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
++ + + LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 144 EVKDRLHTQAL-SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 33/162 (20%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 931
+L+ +S +PG + L+G +GAGK+TL+ V+ G G I K+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 932 RISGYCEQN---DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 988
RI GY Q D P L + +LRL P +K I ++ V+ LI
Sbjct: 68 RI-GYVPQKLYLDTTLP-------LTVNRFLRLRPGT----KKEDILPALKRVQAGHLID 115
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 116 A----P-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 34/227 (14%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKK 926
+ L +S G A++G +G+GK+T+ +L+G + G I I G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG----EIKIDGITIS 74
Query: 927 QETFARIS---GYCEQN-DIHSPFV--TVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL 980
+E I G QN D + F+ TV + + + + V + K I+++ +
Sbjct: 75 KENLKEIRKKIGIIFQNPD--NQFIGATVEDDIAFGLENKK---VPPKKMKDIIDDLAKK 129
Query: 981 VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--- 1037
V ++ + P LS Q++R+ IA L NP II DE TS LD + +
Sbjct: 130 VGMEDYLDKE---P--QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKI 184
Query: 1038 MRTVRNTVDTGRTVVCTIHQPGIDIFDAF--DELFLMKRGGQEIYVG 1082
M +R T +T++ H D+ +A D++ + G+ I G
Sbjct: 185 MVDLRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 19/109 (17%), Positives = 41/109 (37%)
Query: 1279 IPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAA 1338
+ + V + +I+ + G + L + G L ++ N A
Sbjct: 145 LGDLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAI 204
Query: 1339 IVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFG 1387
+V ++ + F G + P P +P + +W + P + GL+ +G
Sbjct: 205 LVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYG 253
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 28/160 (17%)
Query: 887 LTALMGVSGAGKTTLM-------DVLSGRKTGGYIT--------GNITISGYPKKQETFA 931
+TAL+G SG GK+T + D++ G + G+I + + KK
Sbjct: 31 VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKK----- 85
Query: 932 RISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
G Q +PF ++++++ Y LR+ E D + + +EE ++ L ++
Sbjct: 86 --VGMVFQKP--NPFPKSIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAALWDEVKDK 139
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+ + GLS Q++RL IA + +P +I MDEP S LD
Sbjct: 140 LDKSAL-GLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 35/198 (17%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYP-KKQ-E 928
+L +GLS G L + G +GAGKT+L+ +L+G R G + G P ++Q +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ----GEPIRRQRD 70
Query: 929 TFARISGYC-EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 987
+ + Y Q I +T E+L + RL D E L
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGDDEA----------------LW 111
Query: 988 QSL--VGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
++L VGL G V LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
Query: 1041 VRNTVDTGRTVVCTIHQP 1058
+ + G V+ T HQ
Sbjct: 172 LAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 878 LSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISG 935
+S R G A++G +G+GK+TL +L+G T G I N + RI
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 936 -YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLP 994
+ + N +P + + + LRL +++ E R+ I E + +V L P +
Sbjct: 92 IFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY--- 146
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
L+ Q++R+ +A L+ P II DE + LD
Sbjct: 147 -PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 55/258 (21%), Positives = 98/258 (37%), Gaps = 61/258 (23%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMGEFV 223
++ VS +K G + LLGP +GKTT + G K D SG++ +G D+ +
Sbjct: 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD-----SGKILLDGQDITKLP 68
Query: 224 PERTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ A Y+ Q + ++TV E + +G+ S+ E +L
Sbjct: 69 MHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGL-SKKEREEKL------------- 114
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
+ L+ + + +SGGER+RV +
Sbjct: 115 --------------------EELLEEFHITHLRKSKAS-----SLSGGERRRVEIARALA 149
Query: 340 -GPALALFMDEISTGLDSSTTF---QIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
P L +DE G+D +I+ LK + G V+ ET + D
Sbjct: 150 TNPKF-LLLDEPFAGVDPIAVQDIQKIIKILK-----DRGIGVLITDHNVRETLSITDRA 203
Query: 396 ILLSDGQIVYQG-PRELV 412
++ +G+++ +G P E+
Sbjct: 204 YIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 54/237 (22%), Positives = 93/237 (39%), Gaps = 46/237 (19%)
Query: 181 TLLLGPPASGKTTLLLALAG--KLDSS-LKVSGRVTYNGHDMGEFVPERTA-AYISQHDN 236
T + G SGKTTL+ +AG + D + ++GR ++ PE+ Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEAN 296
++VR L RY G+K E
Sbjct: 86 LFPHLSVRGNL-----------RY-------------GMK------------RARPSERR 109
Query: 297 VITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDS 356
+ + +++LG+ + G +SGGE++RV G ++ L MDE LD
Sbjct: 110 ISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
Query: 357 STTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
++I+ L + +H G ++ + E L D +++L DG++ GP V
Sbjct: 165 PRKYEILPYL-ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 41/193 (21%), Positives = 70/193 (36%), Gaps = 43/193 (22%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-- 224
+L +V+ I G + L+GP GK+TLL + G L +G + N + + +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL-DMLPAA 75
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+R + Q ++V + L F+ G+ ARR
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFALPATLKGN--------ARRNA------------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
+ L+ GL + +SGG+R RV ++ A
Sbjct: 115 --------------ANAALERSGL-----DGAFHQDPATLSGGQRARVALLRALLAQPKA 155
Query: 345 LFMDEISTGLDSS 357
L +DE + LD +
Sbjct: 156 LLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 62/268 (23%), Positives = 107/268 (39%), Gaps = 59/268 (22%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
FE + F Y P+R L ++ ++PG L+GP +GK+TL L D
Sbjct: 340 FEQVNFAY----PARPDQPA-LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ- 393
Query: 207 KVSGRVTYNGHDMGEFVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLT 264
SGR+ +G D+ + P R + D + +V E + +
Sbjct: 394 --SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYG-------------- 437
Query: 265 ELARRENEAGIKPDP-DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323
+PD D +V A A E + L DT +G+ +
Sbjct: 438 -----------RPDATDEEVEAAARAAHAHEF---------ISALPEGYDTYLGERGVT- 476
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI---- 379
+SGG+R+R+ ++ A L +DE ++ LD+ + Q+V + + T +I
Sbjct: 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESE-QLVQQALETLMKGRTTLIIAHRL 535
Query: 380 SLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ + A D I+++ G+IV QG
Sbjct: 536 ATVLKA-------DRIVVMDQGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 26/187 (13%)
Query: 885 GVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDI 942
G LT ++G G GK++L+ + G + G + + P + T +R + Y
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR-NRYSVAYAA 85
Query: 943 HSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVG 992
P++ TV E++ + S K + V + L+P I Q+ +G
Sbjct: 86 QKPWLLNATVEENITF----------GSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIG 135
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRT 1050
G++ LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D RT
Sbjct: 136 ERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRT 194
Query: 1051 VVCTIHQ 1057
+V H+
Sbjct: 195 LVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 3e-05
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 18/176 (10%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 933
+L+GLS P ++G +GAGK+++++ L + G I I +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLT-- 1306
Query: 934 SGYCEQNDIHSPFVTVYES-LLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-QSLV 991
D+ + +S +L+S +R + SE + E +E +K +I ++
Sbjct: 1307 -------DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 992 GL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
GL G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 67/273 (24%), Positives = 115/273 (42%), Gaps = 55/273 (20%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
ILK ++ I G + ++GP SGK+TL +AG + + G + + G + + PE
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-LEGDILFKGESILDLEPEE 80
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELA---RRENEAGIKPDPDIDV 283
A H+G LAF + G LA +R+ + + DP ++
Sbjct: 81 RA--------HLGIF-----LAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDP-LEF 126
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM-MVGPA 342
+I + LK++G++ + + + G SGGE+KR +M ++
Sbjct: 127 L-----------EIINE-KLKLVGMD---PSFLSRNVNEGFSGGEKKRNEILQMALLDSE 171
Query: 343 LALFMDEISTGLDSSTTFQI---VNCLKQHVHINSGTAVI------SLLQPAPETYDLFD 393
LA+ +DE +GLD I +N L S ++I LL Y D
Sbjct: 172 LAI-LDETDSGLDIDALKIIAEGINKLM-----TSENSIILITHYQRLLD-----YIKPD 220
Query: 394 DIILLSDGQIVYQGPRELVLEFFESMGFKCPKR 426
+ ++ +G+I+ G EL E E G+ K+
Sbjct: 221 YVHVMQNGKIIKTGDAELAKE-LEKKGYDWLKQ 252
|
Length = 252 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-05
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 964 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
EV ++K+ I + + + K ++LVG S LS Q++R++IA ++ NP I+ +D
Sbjct: 548 EVVDVSKKVLIHDFVSALPDK--YETLVG-SNASKLSGGQKQRISIARAIIRNPKILILD 604
Query: 1024 EPTSGLDARAAAIVMRTVRN 1043
E TS LD ++ +V +T+ N
Sbjct: 605 EATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-05
Identities = 66/222 (29%), Positives = 100/222 (45%), Gaps = 41/222 (18%)
Query: 878 LSGA---FRPGVLTALMGVSGAGKTTLMDVLSG--RKTGG---YITGNITISGYPKKQET 929
LSGA PG + AL+G +GAGK+T+M VL+G + G Y+ +T +G QE
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE- 78
Query: 930 FARISGYCEQNDIHS-----PFVTVYESLLY-----SAWLRLPPEVDSETRKMFIEEVME 979
A I IH P +T+ E++ + + R+ + +KM+ E
Sbjct: 79 -AGIG------IIHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEADKL 125
Query: 980 LVELKPLIQS--LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
L L S LVG LS +++ + IA L +I MDEPT L +
Sbjct: 126 LARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL 180
Query: 1038 MRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1079
R +R GR +V H+ +IF+ D++ + R GQ I
Sbjct: 181 FRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVF-RDGQFI 220
|
Length = 501 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 64/219 (29%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 934
L L + VL + GVSG+GK+TL+ G Y +G + + K
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPKF------- 57
Query: 935 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK----PLIQSL 990
S + +FI+++ L+++ L Q L
Sbjct: 58 --------------------------------SRNKLIFIDQLQFLIDVGLGYLTLGQKL 85
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
S LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 1049 RTVVCTIHQPGIDIFDAFDELFLM-----KRGGQEIYVG 1082
TV+ H D+ + D + K GG+ ++ G
Sbjct: 140 NTVILIEHNL--DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 18/180 (10%)
Query: 890 LMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY---------PKKQETFARISGYCEQN 940
L+G SGAGK++L+ VL+ + +G + I+G K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 941 DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000
P +TV ++L+ + P V ++ + +L+E L P LS
Sbjct: 91 YNLWPHLTVQQNLIEA-----PCRVLGLSKDQALARAEKLLERLRLKPYADRFP--LHLS 143
Query: 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1060
Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V H+ +
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV 203
|
Length = 242 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 4e-05
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 31/160 (19%)
Query: 885 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG-----YPKKQETFARISGYCEQ 939
G TA++G +G GK+TL+ LS T G++ + G Y K+ AR G Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKE--VARRIGLLAQ 88
Query: 940 NDIHSPFVTVYESL---------LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
N +TV E + L++ W + + ++ T+ M + L + QS
Sbjct: 89 NATTPGDITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHLAD-----QS- 140
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
V LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 141 -----VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 4e-05
Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 47/244 (19%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
+ DVS K G+ ++GP +GKTTL+ L D + G++ +G D+
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDI-------- 399
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN-EAGIKPDPDIDVYMK 286
N + ++R+++A + G+ +R + REN G + D +VY
Sbjct: 400 --------NTVTRESLRKSIATVFQDAGLFNR-------SIRENIRLGREGATDEEVY-- 442
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
E +A D+ LK DT+VG+ R +SGGER+R+ ++ A L
Sbjct: 443 ----EAAKAAAAHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIARAILKNAPILV 494
Query: 347 MDEISTGLDSSTTFQI---VNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
+DE ++ LD T ++ ++ L++ N T +I+ DL ++ L G++
Sbjct: 495 LDEATSALDVETEARVKNAIDALRK----NRTTFIIAHRLSTVRNADL---VLFLDQGRL 547
Query: 404 VYQG 407
+ +G
Sbjct: 548 IEKG 551
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 60/251 (23%), Positives = 100/251 (39%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+L +S G++T L+G SGK+TLL L S G + + + + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSK 81
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
R AY+ Q MTVRE +A +G RY L R
Sbjct: 82 AFARKVAYLPQQLPAAEGMTVRELVA-------IG-RYPWHGALGRF------------- 120
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
G + + ++GL+ A +V +SGGER+R ++ +
Sbjct: 121 ---------GAADREKVEEAISLVGLKPLAHRLVDS-----LSGGERQRAWIAMLVAQDS 166
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE ++ LD + ++ L + G VI++L D ++ L G+
Sbjct: 167 RCLLLDEPTSALDIAHQVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGE 225
Query: 403 IVYQG-PRELV 412
++ QG P EL+
Sbjct: 226 MIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNGHDM-----G 220
LK+++ I ++T L+GP GK+TLL +L L +++ G+V ++G D+
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYEL 262
R + Q N M++ + +A+ R G+ + EL
Sbjct: 77 VVELRRRVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKEL 117
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 5e-05
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL 381
R +SGGE++RV + DE + LD T + N L++ V + + V++
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT- 225
Query: 382 LQPAPETY-DLFDDIILLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEVTSR 439
PE DL D I L +G+I +G P E+V F E G +++ + + +
Sbjct: 226 -SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME--GVSEVEKECEVEVGEPIIKV 282
Query: 440 KDQKQYW 446
++ + +
Sbjct: 283 RNVSKRY 289
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 52/208 (25%), Positives = 81/208 (38%), Gaps = 34/208 (16%)
Query: 871 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVL-------SGR---KTGGYITGNITI 920
+L +L +S G AL G SGAGK+TL+ L SGR + G
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 921 SG----YPKKQETFARISGYCEQNDIHSPFVT----VYESLLYSAWLRLPPEVDSETRKM 972
S +++ GY Q P V+ V E LL P E
Sbjct: 80 SPREVLEVRRKTI-----GYVSQFLRVIPRVSALEVVAEPLLERGV---PREAARA---- 127
Query: 973 FIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
EL+ + + L LP + S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 128 ---RARELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183
Query: 1033 AAAIVMRTVRNTVDTGRTVVCTIHQPGI 1060
+V+ + G ++ H +
Sbjct: 184 NRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 6e-05
Identities = 62/269 (23%), Positives = 110/269 (40%), Gaps = 80/269 (29%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
LK ++ IK G +T +LG +GK+TL L G L S SGR+ ++G
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDG----------- 67
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKA 287
+ + +S + L +L RE+ + DPD ++
Sbjct: 68 -----------------KPIDYSRKG---------LMKL--RESVGMVFQDPDNQLF--- 96
Query: 288 IATEGQEANVITDYYLKVLGLEVCADTM---VGDEMIR-GI-----------SGGERKRV 332
A+V D + L++ D + V + + R GI S G++KRV
Sbjct: 97 ------SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 150
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL- 391
++V L +DE + GLD +I+ L + T +I+ T+D+
Sbjct: 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-------THDID 203
Query: 392 -----FDDIILLSDGQIVYQG-PRELVLE 414
D++ ++ +G+++ QG P+E+ E
Sbjct: 204 IVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
|
Length = 283 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 32/162 (19%), Positives = 49/162 (30%), Gaps = 50/162 (30%)
Query: 192 TTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTA----AYISQHDNHIGEMTVRETL 247
+TLL + G L SG + +G D + + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQ---PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307
F R + A E L+ +G
Sbjct: 58 FFGLR-----------DKEADARAEE----------------------------ALERVG 78
Query: 308 LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDE 349
L D + SGG+++RV ++ L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 6e-05
Identities = 57/233 (24%), Positives = 96/233 (41%), Gaps = 50/233 (21%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
LK V+ I+ G L+G GK+TLL ++G + SG V G + E P+R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISG---LAQPTSGGVILEGKQITEPGPDRM 57
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKA 287
+ Q+ + + +TVRE +A + +L +L++ E A
Sbjct: 58 VVF--QNYSLLPWLTVRENIALAVDR--------VLPDLSKSERRA-------------- 93
Query: 288 IATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFM 347
I + ++ ++GL AD G +SGG ++RV + L +
Sbjct: 94 ----------IVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 348 DEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400
DE LD+ T + L Q + T ++ T+D+ D+ +LLSD
Sbjct: 139 DEPFGALDALTRGNLQEELMQIWEEHRVTVLMV-------THDV-DEALLLSD 183
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 26/155 (16%)
Query: 888 TALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHS 944
T ++G+SG+GK+TL +L G +G I ++G+ K T + Y Q
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQE---- 556
Query: 945 PFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-VGL-----PG 995
P++ ++ E+LL A V + I E+ E+K I+++ +G
Sbjct: 557 PYIFSGSILENLLLGA----KENVSQDE----IWAACEIAEIKDDIENMPLGYQTELSEE 608
Query: 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
S +S Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 6e-05
Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 887 LTALMGVSGAGKTTLMDVLSGRKTG-GYITGNITISGYPKKQETFA----RISGYCEQND 941
+TAL+G SG GK+T + + I G + I G K + + +Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 942 IHSPFV-TVYESLLYSAWLR-LPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 999
+ FV ++YE++ Y+ L + D E + + + ++ V L ++ + ++ L
Sbjct: 90 V---FVKSIYENISYAPKLHGMIKNKDEE--EALVVDCLQKVGLFEEVKDKLKQNALA-L 143
Query: 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
S Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 144 SGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNGHDM 219
L VS P +T L+GP SGK+TLL ++ L+ + ++G + YNGH++
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI 74
|
Length = 252 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (109), Expect = 7e-05
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGG--YITGNITISGYP 924
+L+ L+ + +TA +G SG GK+T + D++ G G Y G T S
Sbjct: 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156
Query: 925 KKQETFARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL 983
E RI ++ +PF +++++++ Y R D + + +E+ ++ L
Sbjct: 157 SSLELRTRIGMVFQKP---TPFEMSIFDNVAYGP--RNNGINDRKILEKIVEKSLKSAAL 211
Query: 984 KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
++ + G + LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 212 WDEVKDDLDKAG-NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 22/180 (12%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS---GRKTGGYITGNITISGYPKKQE--- 928
L G+S +TAL+G SG GK+T + L+ R I G++ + G Q+
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 929 --TFARISGYCEQNDIHSPF-VTVYESLLYSA----------WLRLPPEVDSETRKMFIE 975
+ G Q+ +PF ++ E++ Y RL D + +E
Sbjct: 121 LVELRKRVGMVFQSP--NPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVE 178
Query: 976 EVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
+ L + + GLS Q++RL IA L +P +I MDEP S LD A +
Sbjct: 179 RSLRQAALWDEVNDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATS 237
|
Length = 305 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 8e-05
Identities = 60/247 (24%), Positives = 96/247 (38%), Gaps = 51/247 (20%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
IL +S I G+ ++G +GK+T+L L D + SG +T +G D+ +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDI--RDVTQ 332
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
+ + IG + L + T +
Sbjct: 333 QSLRRA-----IGIVPQDTVLFNDTIAYNIKYGRPDATAEE-----------------VG 370
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG--ISGGERKRVTTGEMMVGPALA 344
A A Q + I L DT VG+ RG +SGGE++RV ++
Sbjct: 371 AAAEAAQIHDFIQS-------LPEGYDTGVGE---RGLKLSGGEKQRVAIARTILKNPPI 420
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI----SLLQPAPETYDLFDDIILLSD 400
L +DE ++ LD+ T I L++ V T VI S + A D+II+L +
Sbjct: 421 LILDEATSALDTHTEQAIQAALRE-VSAGRTTLVIAHRLSTIIDA-------DEIIVLDN 472
Query: 401 GQIVYQG 407
G+IV +G
Sbjct: 473 GRIVERG 479
|
Length = 497 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 17/175 (9%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH 943
G + G +GAGKTTL+ VL+G +G I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 944 SPFVTVYESLLYSAWL--RLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 1001
++ E+L + L R ++ + +V L +L V LS
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQMPGSA--------LAIVGLAGYEDTL-----VRQLSA 140
Query: 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 141 GQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
+LK++S +K G LLG SGK+TLL L G L G +T +G
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVP 65
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-05
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 30/213 (14%)
Query: 871 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ 927
K+ L+ +S G + L+G +GAGKTTL+ L G R T G I I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-L 986
++ E + S +TV E+L + R F E + + EL P L
Sbjct: 77 IMREAVAIVPEGRRVFSR-MTVEENLAMGGFF--------AERDQFQERIKWVYELFPRL 127
Query: 987 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
+ + G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++
Sbjct: 128 HERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIE 181
Query: 1047 TGRTVVCTIHQPGIDIF----DAFDELFLMKRG 1075
R + G+ IF +A L L RG
Sbjct: 182 QLR-------EQGMTIFLVEQNANQALKLADRG 207
|
Length = 237 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 9e-05
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 175 IKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE--RTAAYIS 232
+ G + + GP +GKT+LL LAG +G V + G + E + Y+
Sbjct: 24 LNAGELVQIEGPNGAGKTSLLRILAGLARP---DAGEVLWQGEPIRRQRDEYHQDLLYLG 80
Query: 233 QHDNHI-GEMTVRETLAFSARCQGVGSRYELLTELAR 268
H I E+T E L F R G G L LA+
Sbjct: 81 -HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ 116
|
Length = 204 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 9e-05
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 16/192 (8%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
L G++ RPG + L G SGAGK+TL+ ++ G R + G I I+ ++ F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 932 RIS-GYCEQNDIHSPFV--TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 988
R G Q+ H + TVY+++ +P + + V ++ L+
Sbjct: 78 RRQIGMIFQD--HHLLMDRTVYDNV------AIPLIIAGASGDDIRRRVSAALDKVGLLD 129
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
P LS +++R+ IA +V P+++ DEPT LD + ++R G
Sbjct: 130 KAKNFP--IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 1049 RTVVCTIHQPGI 1060
TV+ H G+
Sbjct: 188 VTVLMATHDIGL 199
|
Length = 222 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 1e-04
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 44/183 (24%)
Query: 175 IKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE--RTAAYIS 232
++PG LLG +GKTT L G D+++ SG T G + + + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTG--DTTV-TSGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEG 292
Q D +T RE L AR +GV +
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGVPA---------------------------------- 2044
Query: 293 QEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEIST 352
+E + ++ ++ LGL + AD + G SGG +++++T ++G + +DE +T
Sbjct: 2045 EEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 353 GLD 355
G+D
Sbjct: 2100 GMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE- 225
+L++VS I+PG ++GP SGK+TL + G L SGRV +G D+ ++ P
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNE 73
Query: 226 --RTAAYISQHDN 236
Y+ Q D
Sbjct: 74 LGDHVGYLPQDDE 86
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 1e-04
Identities = 64/276 (23%), Positives = 107/276 (38%), Gaps = 48/276 (17%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD---SSLKVSGRVTYNGHDMGEFVP 224
L D+ +K G T L+G SGK+TLL L G L + V V + E P
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 225 ERTAAYISQH--DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
R + ++ + E TV + +AF + G+
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPK------------------------ 117
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
++A I L+++GL ++ +SGG+ +RV ++
Sbjct: 118 ----------EKAEKIAAEKLEMVGLA----DEFWEKSPFELSGGQMRRVAIAGILAMEP 163
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + GLD +++ L + +H SG V+ + + D D + LL G
Sbjct: 164 EVLVLDEPTAGLDPKARIEMMQ-LFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGH 221
Query: 403 IVYQG-PRELVLE--FFESMGFKCPKRKGVADFLQE 435
I+ G P ++ E F ++ PK AD LQ+
Sbjct: 222 IISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 149 EDIFN----YLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL-- 202
ED+FN YL I ILKD++ I + ++GP SGK+TLL L +
Sbjct: 8 EDVFNISRLYLYI-----NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI 62
Query: 203 -DSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGS 258
DS +KV G+V Y G D+ + + + Q N +++ + +A+ + G+
Sbjct: 63 YDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKE 122
Query: 259 RYEL 262
+ E+
Sbjct: 123 KREI 126
|
Length = 257 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 57/240 (23%), Positives = 99/240 (41%), Gaps = 38/240 (15%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG----RKTGGYITGNITIS--- 921
+ K VL N +S G + ++G SGAGK+ LM VL G T G I ++ +
Sbjct: 11 DGKEVLKN-ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKC 69
Query: 922 GYPKKQETFARISGYC------EQNDIHSPFVTVYESL-------------LYSA----- 957
GY ++ C E+ D + + + LY
Sbjct: 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLD 129
Query: 958 -WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVAN 1016
L E+ E ++ + ++L+E+ L + + LS +++R+ +A +L
Sbjct: 130 NVLEALEEIGYEGKEA-VGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKE 186
Query: 1017 PSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
P + DEPT LD + A +V + V +G ++V T H P + I D D+ ++ G
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLENG 245
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 16/151 (10%)
Query: 892 GVSGAGKTTLMDVLSGRK---TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 948
G SG GK+TL+ +++G + +G G ++ P + R G Q+ P ++
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE----RGVGMVFQSYALYPHLS 91
Query: 949 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLT 1008
V E++ S L+L E + +V E+++L L+ P LS QR+R+
Sbjct: 92 VAENM--SFGLKLA-GAKKEEINQRVNQVAEVLQLAHLLDRK---P--KALSGGQRQRVA 143
Query: 1009 IAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
I LVA PS+ +DEP S LDA A + MR
Sbjct: 144 IGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
S LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 1057 QPGI 1060
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 50/215 (23%)
Query: 885 GVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISGYPKKQETFARISGYCEQND 941
G TA +G +G+GK+T+M +L+G G + I+ K + D
Sbjct: 33 GSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK-------------D 79
Query: 942 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP------------LIQS 989
I V L++ PE ++F E V++ V P L +
Sbjct: 80 IKQIRKKV--GLVFQF-----PE-----SQLFEETVLKDVAFGPQNFGVSQEEAEALARE 127
Query: 990 LVGLPGVSG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
+ L G+S LS Q +R+ IA L P I+ +DEPT+GLD + +M
Sbjct: 128 KLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTL 187
Query: 1041 VRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
+ +G T+V H D+ + D ++++++G
Sbjct: 188 FKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKG 221
|
Length = 280 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 25/169 (14%)
Query: 871 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETF 930
+++ L+ + G + L+G SG GKTT++ +++G + G I I G + T
Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG---EDVTH 72
Query: 931 ARISGYCEQNDI----HS----PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 982
I +Q DI S P +++ E++ Y L++ V E RK ++E +ELV+
Sbjct: 73 RSI----QQRDICMVFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVD 125
Query: 983 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
L V +S Q++R+ +A L+ P ++ DEP S LDA
Sbjct: 126 LAGFEDRYV-----DQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 38/151 (25%), Positives = 52/151 (34%), Gaps = 59/151 (39%)
Query: 889 ALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 946
L+G SG GK+TL ++ G T G I G DI
Sbjct: 43 GLVGESGCGKSTLGRLILGLEEPTSG----EILFEG-----------------KDIT--- 78
Query: 947 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI------QSLVGLPGVSGLS 1000
++ E R+ + E++E V L + LS
Sbjct: 79 -----------------KLSKEERRERVLELLEKVGLPEEFLYRYPHE----------LS 111
Query: 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
QR+R+ IA L NP +I DEP S LD
Sbjct: 112 GGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 65/280 (23%), Positives = 104/280 (37%), Gaps = 70/280 (25%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-- 225
+ +++ I G +L+GP SGKTT + + ++ + SG + +G D+ E P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVEL 73
Query: 226 -RTAAYISQHDNHIG---EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
R Y+ Q IG MTV E +A + + A
Sbjct: 74 RRKIGYVIQ---QIGLFPHMTVEENIALVPKLLKWPK--------EKIRERA-------- 114
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
D L ++GL+ D +SGG+++RV V
Sbjct: 115 ------------------DELLALVGLD---PAEFADRYPHELSGGQQQRVG-----VAR 148
Query: 342 ALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396
ALA L MDE LD T Q+ K + G ++ + E + L D I
Sbjct: 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFK-RLQQELGKTIVFVTHDIDEAFRLADRIA 207
Query: 397 LLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQE 435
++ +G+IV G P E+ + P VA+F+
Sbjct: 208 IMKNGEIVQVGTPDEI---------LRSPANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-04
Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 27/217 (12%)
Query: 850 DEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG-R 908
EVV V+ L + + +S R G + + GV+G G++ L++ +SG R
Sbjct: 254 GEVVLEVE-----DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR 308
Query: 909 KTGGYITGNITISGYPKKQETFARIS-----GYCEQNDIH---SPFVTVYESLLYSAWLR 960
K +G I ++G R Y ++ +++ E+L+
Sbjct: 309 KP---ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG-RHD 364
Query: 961 LPPE-----VDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVA 1015
P +D + F E++E +++ S LS +++L +A EL
Sbjct: 365 KKPFSRGGFLDRRAIRKFARELIEEFDVRA--PSP--DAPARSLSGGNQQKLILARELAR 420
Query: 1016 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
P ++ +PT GLD A + + D G+ V+
Sbjct: 421 RPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 46/192 (23%), Positives = 72/192 (37%), Gaps = 56/192 (29%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
+LKD+S I G ++GP +GK+TLL LAG+L +SG V GE V
Sbjct: 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKV-----GETV- 385
Query: 225 ERTAAYISQHDNHI-GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
Y QH + + + TV E
Sbjct: 386 --KIGYFDQHRDELDPDKTVLE-------------------------------------- 405
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
+ +G E V YL G + ++ + +SGGE+ R+ ++++ P
Sbjct: 406 ELSEGFPDGDEQEVRA--YLGRFGF--TGEDQ--EKPVGVLSGGEKARLLLAKLLLQPPN 459
Query: 344 ALFMDEISTGLD 355
L +DE + LD
Sbjct: 460 LLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 53/266 (19%), Positives = 97/266 (36%), Gaps = 59/266 (22%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF----- 222
+ D I G + +++G SGK+T + L ++ + +G++ +G ++ +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVEL 65
Query: 223 --VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
V + + Q MT+ + + G E R+E
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-------PEQERKE---------- 108
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
KA+ LK++GLE DE+ SGG ++RV +
Sbjct: 109 -----KALEL------------LKLVGLEEYEHRY-PDEL----SGGMQQRVGLARALAA 146
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE + LD + + LK+ + ++ + E + D I+++
Sbjct: 147 EPDILLMDEAFSALDPLIRDSMQDELKK-LQATLQKTIVFITHDLDEAIRIGDRIVIMKA 205
Query: 401 GQIVYQG-PREL--------VLEFFE 417
G+IV G P E+ V EF
Sbjct: 206 GEIVQVGTPDEILRNPANEYVEEFIG 231
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-04
Identities = 65/252 (25%), Positives = 101/252 (40%), Gaps = 62/252 (24%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+LK +S IK G LLG GK+TLL L D G + NG + ++
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADY---- 407
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL-TELARRENEAGIKPDPDIDVYM 285
E +R+ ++ V R L L R+N P+
Sbjct: 408 ------------SEAALRQAISV------VSQRVHLFSATL--RDNLLLAAPN------- 440
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVG-----DEMIRGISGGERKRVTTGEMMVG 340
A++ V L+ +GLE + G E R +SGGE++R+ ++
Sbjct: 441 ---ASDEALIEV-----LQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH 492
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-----FDDI 395
A L +DE + GLD+ T QI+ L +H V+ + T+ L FD I
Sbjct: 493 DAPLLLLDEPTEGLDAETERQILELLAEHA---QNKTVLMI------THRLTGLEQFDRI 543
Query: 396 ILLSDGQIVYQG 407
++ +GQI+ QG
Sbjct: 544 CVMDNGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 62/251 (24%), Positives = 95/251 (37%), Gaps = 65/251 (25%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER- 226
L +VS I G + L+G +GKTTLL L G ++ SGR+ ++G D+ ++ +
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKI 77
Query: 227 ---TAAYISQHDNHIGEMTVRETLA----FSARCQ---GVGSRYELLTELA-RRENEAGI 275
A + + MTV E LA F+ R Q + YEL L RR AG
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAG- 136
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG 335
TM SGGE++ + G
Sbjct: 137 --------------------------------------TM---------SGGEQQMLAIG 149
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
++ L +DE S GL QI + ++Q G + + Q A + L D
Sbjct: 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE--QGMTIFLVEQNANQALKLADRG 207
Query: 396 ILLSDGQIVYQ 406
+L +G +V +
Sbjct: 208 YVLENGHVVLE 218
|
Length = 237 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-04
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 20/162 (12%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR 932
+L G+ G + AL+G +GAGK+TLM +++G +G + I G P + T A+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAK 82
Query: 933 ISGY----CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL-VELKPLI 987
Q + P ++V E++L+ LP S +KM + + L +L
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASM-QKM-KQLLAALGCQLDLDS 136
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
+ L R+ + I L+ + I+ +DEPT+ L
Sbjct: 137 SA-------GSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 22/176 (12%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISG---YP 924
L +S +TA +G SG GK+TL+ D++ + I G I + G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 925 KKQE--TFARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV 981
KK + R G Q +PF ++YE+++Y LRL + +E +
Sbjct: 97 KKVDVAELRRRVGMVFQRP--NPFPKSIYENVVYG--LRLQGINNRRVLDEAVERSLRGA 152
Query: 982 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
L ++ + GLS Q++RL IA + P ++ +DEPTS LD + +
Sbjct: 153 ALWDEVKDRLHENAF-GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKI 207
|
Length = 272 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 29/249 (11%)
Query: 817 NSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLN 876
+ SS LI T G +P + + + V+ + D+ V L+
Sbjct: 9 DESSDGLITTTTATDTTDPSG-----DPAASSGETVIEARDL-------NVFYGDEQALD 56
Query: 877 GLSGAFRPGVLTALMGVSGAGKTTLM---DVLSGRKTGGYITGNITISG---YPKKQETF 930
+S +TA++G SG GK+T + + ++ + G +T G Y +
Sbjct: 57 DVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116
Query: 931 A--RISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 987
A R G Q +PF ++Y+++ Y ++ D + R +EE + L +
Sbjct: 117 ALRRRIGMVFQKP--NPFPKSIYDNVAYGLKIQGYDG-DIDER---VEESLRRAALWDEV 170
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
+ + G+ LS Q++RL IA + +P +I MDEP S LD A + + + +
Sbjct: 171 KDQLDSSGLD-LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE 229
Query: 1048 GRTVVCTIH 1056
TVV H
Sbjct: 230 -YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 37/184 (20%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ----E 928
+L +S F G + ++G SGAGK+TL+ +++ + G+I I G K +
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLIN--RLIDPTEGSILIDGVDIKTIDVID 74
Query: 929 TFARISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 985
+I +Q P + TV +++ Y L+ VD E
Sbjct: 75 LRRKIGMVFQQ-----PHLFEGTVKDNIEYGPMLKGEKNVDVE----------------- 112
Query: 986 LIQSLVGLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
S+VGL V LS + +R++IA L NP ++ +DEPTS LD + I+
Sbjct: 113 YYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEE 172
Query: 1040 TVRN 1043
+
Sbjct: 173 LIVK 176
|
Length = 241 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 53/255 (20%), Positives = 99/255 (38%), Gaps = 53/255 (20%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF---V 223
ILKD+S + G + ++GP +GK+TL+ + +D + G + +G D+
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
R + Q H+ E TV++ + + +G
Sbjct: 75 LRRKIGMVFQQP-HLFEGTVKDNIEYGPMLKG---------------------------- 105
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
E NV +YYL ++GL + ++ +SGGE +RV+ +
Sbjct: 106 ----------EKNVDVEYYLSIVGL----NKEYATRDVKNLSGGEAQRVSIARTLANNPE 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE ++ LD ++T +I+ L + VI + + + D L+ G +
Sbjct: 152 VLLLDEPTSALDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL 210
Query: 404 VYQGPRELVLEFFES 418
V +FF +
Sbjct: 211 VEYAK---TYDFFTN 222
|
Length = 241 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 34/193 (17%), Positives = 60/193 (31%), Gaps = 55/193 (28%)
Query: 882 FRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQND 941
F G LT + G +G+GK+T++D + G G A +
Sbjct: 18 FGEGSLTIITGPNGSGKSTILDAI------GLALG----------GAQSATRRRSGVKAG 61
Query: 942 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 1001
V+ LI + + L G G
Sbjct: 62 CIVAAVSAE-----------------------------------LIFTRLQLSG--GEKE 84
Query: 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGID 1061
L +A+ + + +DE GLD R + + + G V+ H P +
Sbjct: 85 LSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--E 142
Query: 1062 IFDAFDELFLMKR 1074
+ + D+L +K+
Sbjct: 143 LAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 133 ASKALPSFTKFYTTVFEDIFN-YLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGK 191
SK + + ++ + + G + LKD+S I G ++G +GK
Sbjct: 9 VSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFW--ALKDISFEIYKGERVGIIGHNGAGK 66
Query: 192 TTLLLALAG--KLDS-SLKVSGRVTYNGHDMGE-FVPERTAAY 230
+TLL +AG K S +KV+G+V ++G F PE T
Sbjct: 67 STLLKLIAGIYKPTSGKVKVTGKVAP-LIELGAGFDPELTGRE 108
|
Length = 249 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 61/261 (23%), Positives = 92/261 (35%), Gaps = 66/261 (25%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T L +SG ++ G + L+GP +GK+TLL +AG SG + + G + +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
A AY+SQ M V L Q +R ELL ++A
Sbjct: 69 ELARHRAYLSQQQTPPFAMPVWHYLTLH---QPDKTRTELLNDVAGALA----------- 114
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE--MMVG 340
+ D LG +SGGE +RV + +
Sbjct: 115 ---------------LDDK----LG-----------RSTNQLSGGEWQRVRLAAVVLQIT 144
Query: 341 PAL-----ALFMDEISTGLD---SSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392
P L +DE LD S ++++ L Q G A++ T
Sbjct: 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-----QGLAIVMSSHDLNHTLRHA 199
Query: 393 DDIILLSDGQIVYQGPRELVL 413
LL G+++ G RE VL
Sbjct: 200 HRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 3e-04
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 36/170 (21%)
Query: 887 LTALMGVSGAGKTTLM-------DVLSGRKTGGYI-----TGNITISGYPKKQETFARIS 934
+TAL+G SG GK+T + D+ G G I NI +S E RIS
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI-LSPEVDPIEVRMRIS 102
Query: 935 GYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV--------ELKP 985
++ + PF +++E++ Y +R R+ +EE +E E+K
Sbjct: 103 MVFQKPN---PFPKSIFENVAYGLRIR------GVKRRSILEERVENALRNAALWDEVKD 153
Query: 986 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
+ L LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 154 RLGDLA-----FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-04
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 989 SLVGLP------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
LVGL LS Q++R+ +A L P + DEPT+GLD + ++
Sbjct: 150 ELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFD 209
Query: 1043 NTVDTGRTVVCTIH 1056
N G+T++ H
Sbjct: 210 NLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 63/245 (25%), Positives = 105/245 (42%), Gaps = 44/245 (17%)
Query: 885 GVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISGYPKKQETFARISGYCEQND 941
G + AL+G SG GK+TL+ +L+G + G + + +S P Q R Q+
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RPINMMFQSY 100
Query: 942 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL------KPLIQSLVGLPG 995
P +TV +++ + P+ + +R + E++ LV + KP
Sbjct: 101 ALFPHMTVEQNIAFGLKQDKLPKAEIASR---VNEMLGLVHMQEFAKRKP---------- 147
Query: 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCT 1054
LS QR+R+ +A L P ++ +DEP LD + + V + ++ G T V
Sbjct: 148 -HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMV 206
Query: 1055 IHQPGIDIFDAFD---ELFLMKRGG-------QEIYVGPLGRHSCQLISYFEAIPGV--E 1102
H D +A + +M RG +EIY P R+S + I GV E
Sbjct: 207 TH----DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLKE 262
Query: 1103 KIKDG 1107
+ +DG
Sbjct: 263 RQEDG 267
|
Length = 377 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 60/258 (23%), Positives = 105/258 (40%), Gaps = 52/258 (20%)
Query: 156 GILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYN 215
+ + + + LK +S I+ G + +GP +GKTT L L+G L + SG V
Sbjct: 25 SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVA 81
Query: 216 GHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
G VP +R ++ + IG + G + +L +L ++
Sbjct: 82 G-----LVPWKRRKKFLRR----IGVV--------------FGQKTQLWWDLPVIDSFYL 118
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
+ +Y A + + +++ +L LE DT V R +S G+R R
Sbjct: 119 LA-----AIYDLPPARFKKRLDELSE----LLDLEELLDTPV-----RQLSLGQRMR--- 161
Query: 335 GEMMVGPAL-----ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETY 389
+ AL LF+DE + GLD I N LK++ GT V+ +
Sbjct: 162 --AEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR-ERGTTVLLTSHYMKDIE 218
Query: 390 DLFDDIILLSDGQIVYQG 407
L ++++ G+++Y G
Sbjct: 219 ALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 4e-04
Identities = 63/267 (23%), Positives = 101/267 (37%), Gaps = 53/267 (19%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM-----GE 221
+LK ++ +T L+G GK+TL + L+G L G V + G + G
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGL 72
Query: 222 FVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
+ A + Q + I + +AFS R GV E+ RR +EA
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPE-----AEITRRVDEA------- 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
L + + I+ +S G++KRV +V
Sbjct: 121 ---------------------------LTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL 153
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400
A L +DE + GLD + Q++ +++ V G VI Y++ D + +L
Sbjct: 154 QARYLLLDEPTAGLDPAGRTQMIAIIRRIV--AQGNHVIISSHDIDLIYEISDAVYVLRQ 211
Query: 401 GQIVYQG-PRELVL--EFFESMGFKCP 424
GQI+ G P E+ E E G P
Sbjct: 212 GQILTHGAPGEVFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 50/216 (23%), Positives = 92/216 (42%), Gaps = 24/216 (11%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK--KQ 927
D +L G+S +TA++G SG GK+T + L+ + + + G + Q
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 928 ETFAR---ISGYCEQNDIHSPF-----VTVYESLLYSAWL---RLPPEVDSETRKMFIEE 976
+ R ++ Q + P ++VY+++ Y + R E+D +E
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD-----IVES 129
Query: 977 VMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
++ +L I+ + + LS Q++RL IA L P ++ MDEP GLD A+
Sbjct: 130 ALKDADLWDEIKHKIHKSALD-LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMK 188
Query: 1037 VMRTVRN-TVDTGRTVVCTIHQ-PGIDIFDAFDELF 1070
V +++ + + T+V H + F F
Sbjct: 189 VESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFF 224
|
Length = 261 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 56/200 (28%), Positives = 86/200 (43%), Gaps = 25/200 (12%)
Query: 887 LTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISG---YPKKQET--FARISGYCE 938
+TAL+G SG GK+T + L+ I G ++I G Y + + G
Sbjct: 40 VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVF 99
Query: 939 QNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMF---IEEVMELVELKPLIQSLVGLP 994
Q +PF +++Y+++ Y P + +K +E + L + P
Sbjct: 100 QKP--NPFPMSIYDNVAYG------PRIHGANKKDLDGVVENALRSAALWDETSDRLKSP 151
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1054
+S LS Q++RL IA L P II DEPTS LD + A + + N + T+V
Sbjct: 152 ALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN-LKKDYTIVIV 209
Query: 1055 IH--QPGIDIFDAFDELFLM 1072
H Q I D + FLM
Sbjct: 210 THNMQQAARISD-YTGFFLM 228
|
Length = 258 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 4e-04
Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 40/220 (18%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR--KTGGYITGNITISGYPKKQETFAR 932
LNG++ + G L A++G G GK++L+ L K G++ +++ P++ A
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ----AW 709
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-- 990
I QND ++ E++L+ L + ++V+E L P ++ L
Sbjct: 710 I-----QND------SLRENILFGKALNEK----------YYQQVLEACALLPDLEILPS 748
Query: 991 -----VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT- 1044
+G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 749 GDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPE 807
Query: 1045 -VDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083
V +T + H GI D + +M GG+ +G
Sbjct: 808 GVLKNKTRILVTH--GISYLPQVDVIIVMS-GGKISEMGS 844
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 53/250 (21%), Positives = 97/250 (38%), Gaps = 48/250 (19%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
L +S I G ++G +GK+TLL A+AG L + SG++ +G D+ +
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVA 76
Query: 226 RTAAYISQ-----HDNHIGEMTVRETLAFSA-RCQGVGSRYELLTELARRENEAGIKPDP 279
+ A +++ E+T+ E LA + R + G L
Sbjct: 77 KRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRR------------ 124
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
+ + +A G LGLE +G +SGG+R+ ++ +
Sbjct: 125 --SSFRERLARLG-------------LGLENRLSDRIGL-----LSGGQRQALSLLMATL 164
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI---SLLQPAPETYDLFDDII 396
P L +DE + LD T ++ + V + T ++ ++ D + +I
Sbjct: 165 HPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMED----ALDYGNRLI 220
Query: 397 LLSDGQIVYQ 406
+L G+IV
Sbjct: 221 MLHSGKIVLD 230
|
Length = 263 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 5e-04
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 50/200 (25%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
L L +++ I G++T+++G GK++LLLA+ G++ + G+V ++ + E
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSF 70
Query: 225 ERT-------AAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
E T AY +Q + TV E + F + RY+ +T+ +
Sbjct: 71 EATRSRNRYSVAYAAQ-KPWLLNATVEENITFGSPFN--KQRYKAVTDACSLQ------- 120
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI--SGGERKRVTTG 335
PDID+ L T +G+ RGI SGG+R+R+
Sbjct: 121 -PDIDL------------------------LPFGDQTEIGE---RGINLSGGQRQRICVA 152
Query: 336 EMMVGPALALFMDEISTGLD 355
+ +F+D+ + LD
Sbjct: 153 RALYQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 5e-04
Identities = 28/253 (11%), Positives = 69/253 (27%), Gaps = 25/253 (9%)
Query: 1188 NPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQP 1247
+ +L G G S + + + +I + + +
Sbjct: 48 ASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSF 107
Query: 1248 VVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAM---MGYDWTAE 1304
++ R + + S + +PY+ V S++ +++ + +G +
Sbjct: 108 SSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGS 167
Query: 1305 KFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVW 1364
+ + L +L+ A+ V L G P +P W
Sbjct: 168 LLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAW 227
Query: 1365 WRWYYWANPVAWTLYGLIASQFGDVEDQMENGETVKHFLRDYFGFKHDFLGLVAGVLTCF 1424
+ + NP+ + + LR + G+ +L
Sbjct: 228 LQGISYINPLTYAI----------------------DALRYVYLGGWRNDGIWISLLILL 265
Query: 1425 VALFGFVFALGIK 1437
+ F+ +
Sbjct: 266 LFAVVFLLLGLLL 278
|
Length = 286 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 5e-04
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 29/177 (16%)
Query: 889 ALMGVSGAGKTTLMDVLSGRKTGGYI----TGNITISGYPKKQETFARISGYCEQNDIHS 944
L+G +GAGK+TL+ +L+G I +G +T+ G R+S +
Sbjct: 52 GLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG---------RVSSLLGLGGGFN 96
Query: 945 PFVTVYESL-LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 1003
P +T E++ L L L + E I+E++E EL I LP V S+
Sbjct: 97 PELTGRENIYLNGRLLGLSRKEIDE----KIDEIIEFSELGDFID----LP-VKTYSSGM 147
Query: 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1060
+ RL A+ P I+ +DE + DA R +R + G+TV+ H P
Sbjct: 148 KARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS 204
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQ 1057
LS Q++R+ IA L NPS+I +DE TS LD A ++ VR + T++ H
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH- 201
Query: 1058 PGIDIFDAF--DELFLMKRG 1075
D+ +A D + +M +G
Sbjct: 202 ---DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 5e-04
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 978 MELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARAAA 1035
E + + L Q L+ + G S RL +A+ L P ++ +DE TS LDA A
Sbjct: 38 GEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEA 97
Query: 1036 IVMRTVRNTVD------TGRTVVCTIHQPGI----DIFDAFDELFLMKRG 1075
+++ + TV+ T + + FD ++
Sbjct: 98 LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 29/166 (17%)
Query: 880 GAFRPGVLTALMGVSGAGKTTLMDVLSGR---KTGGYITGNITISGYPKKQETFARISGY 936
G+ + ++G +G GKTT + +L+G G T+S Y K Q A G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-Y-KPQYIKADYEG- 76
Query: 937 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 996
TV + LL S D T F E+ + ++++ ++ V
Sbjct: 77 -----------TVRD-LLSSI------TKDFYTHPYFKTEIAKPLQIEQILDREV----- 113
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 114 PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 58/258 (22%), Positives = 100/258 (38%), Gaps = 53/258 (20%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMG 220
K ++ DVS + G + LLGP +GKTT + G + D SG++ + D+
Sbjct: 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD-----SGKILLDDEDIT 69
Query: 221 EFVPERTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIK 276
+ + A Y+ Q + ++TV + + R + L + R+E
Sbjct: 70 KLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLE-----IREKDLKKAERKE------ 118
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
E + + L+ + D+ +SGGER+RV
Sbjct: 119 -----------------ELDAL----LEEFHITHLRDSKAY-----SLSGGERRRVEIAR 152
Query: 337 -MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
+ P L DE G+D I +K + G V+ ET D+ D
Sbjct: 153 ALAANPKFILL-DEPFAGVDPIAVIDIQRIIKH--LKDRGIGVLITDHNVRETLDICDRA 209
Query: 396 ILLSDGQIVYQG-PRELV 412
++SDG+++ +G P E+V
Sbjct: 210 YIISDGKVLAEGSPEEIV 227
|
Length = 243 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 7e-04
Identities = 55/261 (21%), Positives = 101/261 (38%), Gaps = 49/261 (18%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYN-GHDMGEF 222
L L +VS I G ++G SGKTT + L L L +G + + + +
Sbjct: 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL---LPDTGTIEWIFKDEKNKK 75
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVG-----SRYELLTELARRENEAGIKP 277
+ + I + ++ + VG + Y+L E I
Sbjct: 76 KTKEKEKVLE--KLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF--------EQTI-- 123
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR---GISGGERKRVT- 333
+ DI ++ +EA Y++++GL+ + R +SGG+++RV
Sbjct: 124 EKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE-------SYLQRSPFELSGGQKRRVAL 176
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393
G + + P L DE + GLD +I+ +++ T ++ T+DL D
Sbjct: 177 AGILAMEPDF-LVFDEPTAGLDPQGVKEILEIFD-NLNKQGKTIILV-------THDL-D 226
Query: 394 DI-------ILLSDGQIVYQG 407
++ I DG+I+ G
Sbjct: 227 NVLEWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-04
Identities = 47/184 (25%), Positives = 70/184 (38%), Gaps = 52/184 (28%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS---GRKTGGYITGNITISGYPKKQETFA 931
+ G+ F +TAL+G SG+GK+T + L+ +TG I G
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI-------- 87
Query: 932 RISGYCEQNDIHSPFVTVYE--SLLYSAWLRLPP-------------EVDSETRKMFIEE 976
DI+ + VYE + + R P E K ++E
Sbjct: 88 ---------DINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDE 138
Query: 977 VMELVELKP----------LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1026
++E LK L +S + L G Q++RL IA + P I+ MDEP
Sbjct: 139 IVE-TSLKQAALWDQVKDDLHKSALTLSG------GQQQRLCIARAIAVKPDILLMDEPA 191
Query: 1027 SGLD 1030
S LD
Sbjct: 192 SALD 195
|
Length = 267 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 7e-04
Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 24/168 (14%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS--GRKTGG--YITGNITISGYPKKQETF 930
L+G+S G A++G SG GK+TL +L+ TGG Y G + + +
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKADPEAQKL 89
Query: 931 ARISGYCEQNDIHSPFVTVYESL--------LYSAWLRLPPEVDSETRKMFIEEVMELVE 982
R I F Y SL + L + + + R+ +M V
Sbjct: 90 LR-------QKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVG 142
Query: 983 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
L+P + P + S QR+R+ IA L+ +P ++ DEP S LD
Sbjct: 143 LRP--EHYDRYPHM--FSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 8e-04
Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 19/190 (10%)
Query: 876 NGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG---RKTGGYITGNITI---SGYPKKQET 929
+S + G + G+ G+G+T LM+ L G R G I S ++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 930 FARISGYCEQNDIHSPF-----VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 984
A I+ N F + + SL + + E EL+ LK
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 985 --PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
+ Q++ L G Q+K L I+ L P +I DEPT G+D A A + + +R
Sbjct: 400 CHSVNQNITELSG-----GNQQKVL-ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 1043 NTVDTGRTVV 1052
D G+ ++
Sbjct: 454 QLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 8e-04
Identities = 59/250 (23%), Positives = 102/250 (40%), Gaps = 38/250 (15%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
PS ++ + +LK +S I G M ++G SGK+TL+ L G LD + RV G D
Sbjct: 15 PSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKPTSGTYRVA--GQD 71
Query: 219 MGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
+ + A RE F + RY LL+ L +N
Sbjct: 72 VATLDADALAQL------------RREHFGF------IFQRYHLLSHLTAAQN------- 106
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
++ + + + L+ LGLE + +SGG+++RV+ +
Sbjct: 107 VEVPAVYAGLERKQRLLRAQE--LLQRLGLEDRVEYQPSQ-----LSGGQQQRVSIARAL 159
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398
+ + DE + LDS + +++ L Q + G VI ++ P+ + +I +
Sbjct: 160 MNGGQVILADEPTGALDSHSGEEVMAILHQLR--DRGHTVI-IVTHDPQVAAQAERVIEI 216
Query: 399 SDGQIVYQGP 408
DG+IV P
Sbjct: 217 RDGEIVRNPP 226
|
Length = 648 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-04
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY--ITGNITISGYPKKQETFAR 932
L ++ G AL+G SG+GK+T+ ++L T Y G I + G+ + T A
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 933 ISGYC---EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE-LKPLIQ 988
+ QN +H T+ ++ Y+ + E E +M M+ + + +
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARM--AYAMDFINKMDNGLD 471
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+++G GV LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 472 TVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALD 512
|
Length = 582 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 316 VGDEMIRGISGGERKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINS 374
V + + G+SGG+++RV + + P + L +DE ++ LD T ++ LK +
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDV-LLLDEPTSALDPITRREVRALLKS-LQAQL 150
Query: 375 GTAVISLLQPAPETYDLFDDIILLSDGQ 402
G V+ + E L D +++L DG+
Sbjct: 151 GITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 51/265 (19%), Positives = 102/265 (38%), Gaps = 67/265 (25%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG-- 220
K +++DVS + G + LLGP +GKTT + G + +G + + D+
Sbjct: 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLL 70
Query: 221 ----------EFVPERTAAY--ISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELAR 268
++P+ + + +S +DN + + +R+ L+ R
Sbjct: 71 PLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR--------------ED 116
Query: 269 RENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328
R NE ++ +++++ L D M + +SGGE
Sbjct: 117 RANE------------------------LMEEFHIEHLR----------DSMGQSLSGGE 142
Query: 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388
R+RV + + +DE G+D + I + +H+ +SG V+ ET
Sbjct: 143 RRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII-EHLR-DSGLGVLITDHNVRET 200
Query: 389 YDLFDDIILLSDGQIVYQGPRELVL 413
+ + ++S G ++ G +L
Sbjct: 201 LAVCERAYIVSQGHLIAHGTPTEIL 225
|
Length = 241 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 28/195 (14%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG-------RKTGGYITGNITISGYPKKQ 927
LN +S + G TAL+G +G+GK+T+ +++G + IT+ G
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS------KITVDGITLTA 76
Query: 928 ETFARIS---GYCEQNDIHSPFV--TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 982
+T I G QN + FV TV + + + R V + +V+ V
Sbjct: 77 KTVWDIREKVGIVFQNP-DNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVG 132
Query: 983 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
+ I S + LS Q++R+ IA L P II +DE TS LD +++ +R
Sbjct: 133 MLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187
Query: 1043 N-TVDTGRTVVCTIH 1056
TV+ H
Sbjct: 188 KLKKKNNLTVISITH 202
|
Length = 282 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.001
Identities = 52/242 (21%), Positives = 97/242 (40%), Gaps = 44/242 (18%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMGEF 222
+LK + +K G + +++GP SGK+TLL + + D SG + +G
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD-----SGTIIIDGLK---- 63
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
++ +I +R+ + V ++ L L EN I P
Sbjct: 64 --------LTDDKKNI--NELRQKVGM------VFQQFNLFPHLTVLEN---ITLAP--- 101
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE-MMVGP 341
+K EA L+ +GL A D +SGG+++RV + + P
Sbjct: 102 --IKVKGMSKAEAEERALELLEKVGLADKA-----DAYPAQLSGGQQQRVAIARALAMNP 154
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
+ LF DE ++ LD ++++ +K G ++ + ++ D +I + DG
Sbjct: 155 KVMLF-DEPTSALDPELVGEVLDVMKDLAE--EGMTMVVVTHEMGFAREVADRVIFMDDG 211
Query: 402 QI 403
+I
Sbjct: 212 RI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 59/270 (21%), Positives = 108/270 (40%), Gaps = 71/270 (26%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTT---LLLALAGKLD 203
F+++ F Y P+R L +L+DVS + PG +T L+GP SGK+T LL
Sbjct: 14 FQNVTFAY----PTRPDTL-VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 204 SSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGS-R 259
G+V +G + ++ + + + Q ++++ +A+ G+ S
Sbjct: 69 ------GQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAY-----GLQSCS 116
Query: 260 YELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319
+E + E A++ + + L DT VG+
Sbjct: 117 FECVKEAAQKAHAHSF-----------------------------ISELASGYDTEVGE- 146
Query: 320 MIRG--ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA 377
+G +SGG+++RV ++ L +DE ++ LD+ + Q V
Sbjct: 147 --KGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE-QQVQQALYDWPERRTVL 203
Query: 378 VI----SLLQPAPETYDLFDDIILLSDGQI 403
VI S ++ A D I++L G+I
Sbjct: 204 VIAHRLSTVERA-------DQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 59/260 (22%), Positives = 100/260 (38%), Gaps = 47/260 (18%)
Query: 156 GILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYN 215
G L K+ +L +VS I+ G LLG GK+TL L G L+ + G V++
Sbjct: 15 GGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG-LEKPAQ--GTVSFR 71
Query: 216 GHDMGEFVPE------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARR 269
G D+ + + R + Q + + R T+ Q +G LT L
Sbjct: 72 GQDLYQLDRKQRRAFRRDVQLVFQ--DSPSAVNPRMTVR-----QIIGEPLRHLTSLDES 124
Query: 270 ENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGER 329
E +A I L ++GL + D++ R +SGG+
Sbjct: 125 EQKARIA------------------------ELLDMVGL----RSEDADKLPRQLSGGQL 156
Query: 330 KRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388
+R+ + V P L + +DE + LD I+ L++ + GTA + +
Sbjct: 157 QRINIARALAVKPKL-IVLDEAVSNLDMVLQAVILELLRK-LQQAFGTAYLFITHDLRLV 214
Query: 389 YDLFDDIILLSDGQIVYQGP 408
+ ++ GQIV +
Sbjct: 215 QSFCQRVAVMDKGQIVEECD 234
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 59/277 (21%), Positives = 105/277 (37%), Gaps = 60/277 (21%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-- 225
+ D S ++ G + +++G SGK+TL+ L ++ + G + +G D+ +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAEL 100
Query: 226 -----RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
+ + + Q + TV E +AF QGV A RE A
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP--------KAEREERA------- 145
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
++A+ G E Y D+ +SGG ++RV +
Sbjct: 146 ----LEALELVGLE-----GY---------------ADKYPNELSGGMQQRVGLARALAN 181
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE + LD ++ + L + + ++ + E + D I ++ D
Sbjct: 182 DPDILLMDEAFSALDPLIRTEMQDELLE-LQAKLKKTIVFITHDLDEALRIGDRIAIMKD 240
Query: 401 GQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
G+IV G P E++L P V DF++ V
Sbjct: 241 GEIVQVGTPEEILLN---------PANDYVRDFVRNV 268
|
Length = 386 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG---YPKKQETF 930
+L GL+ + G + A+MG +G+GK+TL V++G + G+I G + E
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 931 ARISGYCE-QNDIHSPFVT-------VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 982
A + + Q I P V+ Y S L PE+D I E ++LV
Sbjct: 82 AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGL---PELDPLEFLEIINEKLKLVG 138
Query: 983 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
+ P S G SG ++KR I + + + +DE SGLD A I+ +
Sbjct: 139 MDPSFLSRNVNEGFSG---GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGIN 195
Query: 1043 NTVDTGRTVVCTIH 1056
+ + +++ H
Sbjct: 196 KLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 324 ISGGERKRV-TTGEMMVGPALALF-MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL 381
+SGGE +RV E+ P LF +DE STGL Q++ +K I+ G VI L
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG--LIDLGNTVI-L 144
Query: 382 LQPAPETYDLFDDIILL------SDGQIVYQG 407
++ + D II S G++V+ G
Sbjct: 145 IEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 25/156 (16%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR--ISGYCEQN 940
G A++G SGAGK+TL+++++G T +G++T++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 941 DIHSPFVTVYE--SLLYSAWLRLPPE----VDSETRKMFIEEVMELVELKPLIQSLVGLP 994
++ +TV + L + L+L + + R+M IE+++ LP
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLAR------------LP 127
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
G LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 128 G--QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 66/256 (25%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV 223
HL + D++ ++ G +LGP +GK+TLL +AG L + SG +T NG D
Sbjct: 13 HLPMRFDLT--VERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTP 67
Query: 224 P-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
P R + + Q +N +TV + + G+ G+K +
Sbjct: 68 PSRRPVSMLFQENNLFSHLTVAQNIGL-----GL---------------NPGLKLNAAQR 107
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ AIA + +G+E + G +SGG+R+RV +V
Sbjct: 108 EKLHAIARQ--------------MGIEDLLARLPGQ-----LSGGQRQRVALARCLVREQ 148
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL----------QPAPETYDLF 392
L +DE + LD + +++ + Q ++LL + AP +
Sbjct: 149 PILLLDEPFSALDPALRQEMLTLVSQVCQ----ERQLTLLMVSHSLEDAARIAPRS---- 200
Query: 393 DDIILLSDGQIVYQGP 408
++++DG+I + GP
Sbjct: 201 ---LVVADGRIAWDGP 213
|
Length = 232 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.001
Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 14/208 (6%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG---RKTGGYITGNITISGYPKKQETFA 931
LN S F+ +T ++G +G+GK+T++ + +G +TG I G+ I KK +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 932 RIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 988
R+ G Q + F E + + L E ++ ++V EL++L L +
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL-----GENKQEAYKKVPELLKLVQLPE 141
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDT 1047
V LS Q++R+ +A + + + + +DEPT GLD + + R +
Sbjct: 142 DYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY 200
Query: 1048 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
+ ++ H + DE+ +M G
Sbjct: 201 KKRIIMVTHNMD-QVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 39/179 (21%)
Query: 887 LTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISG---YPKKQETF---ARI 933
+TA +G SG GK+T + D + K + G + I G Y A++
Sbjct: 33 VTAFIGPSGCGKSTFLRCFNRMNDFVPNCK----VKGELDIDGIDVYSVDTNVVLLRAKV 88
Query: 934 SGYCEQNDIHSPFV-TVYESLLYSAWL--------RLPPEVDSETRKMFIEEVMELVELK 984
G Q +PF ++Y+++ Y L +L V+ + + E EL
Sbjct: 89 -GMVFQKP--NPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWE-----ELG 140
Query: 985 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
++ LS Q++RL IA + P+++ MDEP S LD A ++ ++
Sbjct: 141 DRLKD-----SAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 19/207 (9%)
Query: 879 SGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGY--PKKQETFARI 933
+ + G A++G +G+GK+TL+ L+G + T G +T G I+ KK + +
Sbjct: 27 NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKK 86
Query: 934 SGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP--LIQSL 990
G Q H F TV + + + E D++ + E++ELV L L +S
Sbjct: 87 VGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK---AREMIELVGLPEELLARSP 143
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGR 1049
L G Q +R+ IA L P ++ +DEPT+GLD + +M + + G
Sbjct: 144 FELSG------GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGL 197
Query: 1050 TVVCTIHQPGIDIFDAFDELFLMKRGG 1076
T V H D D++ +M +G
Sbjct: 198 TTVLVTHSME-DAARYADQIVVMHKGT 223
|
Length = 290 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 14/83 (16%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+L+DVS + G++T++LG SGK+TLL +L + + S GRV ER
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRV----------WAER 721
Query: 227 TAAYISQHDNHIGEMTVRETLAF 249
+ AY+ Q I TVR + F
Sbjct: 722 SIAYVPQQ-AWIMNATVRGNILF 743
|
Length = 1560 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 38/195 (19%)
Query: 858 MPQEMKLQGV--LEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSG- 907
M ++K++GV K +L ++ F +TA++G SG GK+TL+ D++SG
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 908 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVD 966
R G + N I + G Q +PF ++++++ + P +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP--NPFPKSIFDNVAFG------PRML 112
Query: 967 SETRKMFIEEVMELVELKPLIQSLV-----------GLPGVSGLSTEQRKRLTIAVELVA 1015
T + ++EV+E K L Q+ + GL LS Q++RL IA L
Sbjct: 113 GTTAQSRLDEVVE----KSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLAI 164
Query: 1016 NPSIIFMDEPTSGLD 1030
P +I MDEP S LD
Sbjct: 165 EPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 39/206 (18%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
L D+S + PG + +L+GP +GKTTL+ + GK G V ++G
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGD---------- 67
Query: 228 AAYISQHDNH-IGEMTVRETLAFSARCQGVGSRYE---LLTELARREN-EAGIKPDPDID 282
+++ H I G+G +++ + L REN E + D +
Sbjct: 68 -TDLTKLPEHRIARA-------------GIGRKFQKPTVFENLTVRENLELALNRDKSVF 113
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ A + + D L +GL D + +S G+++ + G ++
Sbjct: 114 ASLFARLRAEERRRI--DELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDP 166
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQ 368
L +DE G+ + T + LK
Sbjct: 167 KLLLLDEPVAGMTDAETEKTAELLKS 192
|
Length = 249 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.002
Identities = 58/238 (24%), Positives = 99/238 (41%), Gaps = 50/238 (21%)
Query: 175 IKPGRMTLLLGPPASGKTTLLLALAGKL--DSSLKVSGRVTYNGHDMGEFVPE---RTAA 229
+ G+ L+GP +GKT+LL AL G L SLK+ NG ++ E PE + +
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKI------NGIELRELDPESWRKHLS 426
Query: 230 YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIA 289
++ Q + + T+R+ + PD + +A+
Sbjct: 427 WVGQ-NPQLPHGTLRDNVLLG-------------------------NPDASDEQLQQAL- 459
Query: 290 TEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDE 349
+ A V L GL DT +GD+ G+S G+ +R+ ++ P L +DE
Sbjct: 460 ---ENAWVSEFLPLLPQGL----DTPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDE 511
Query: 350 ISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ LD+ + ++ L + V L+ + +D I ++ DGQIV QG
Sbjct: 512 PTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ----WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 24/192 (12%)
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT-TGEMMVGPALAL 345
A+ + EA + +YL +GL D + G+SGG+++RV G + + P + +
Sbjct: 144 ALGVKKSEAKKLAKFYLNKMGL----DDSYLERSPFGLSGGQKRRVAIAGILAIQPEILI 199
Query: 346 FMDEISTGLD---SSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
F DE + GLD Q++ K + V + ++ D++I++ G+
Sbjct: 200 F-DEPTAGLDPKGEHEMMQLILDAKA-----NNKTVFVITHTMEHVLEVADEVIVMDKGK 253
Query: 403 IVYQG-PRELVL--EFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVE 459
I+ G P E+ S + P+ V + ++ +KD K Y +K R T+E
Sbjct: 254 ILKTGTPYEIFTDQHIINSTSIQVPR---VIQVINDL-IKKDPK-YKKLYQKQPR--TIE 306
Query: 460 EFAEAFQSFHVG 471
+ A+A F G
Sbjct: 307 QLADAINEFIKG 318
|
Length = 320 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 52/258 (20%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNG-----HDMG 220
L D++ I ++T L+GP GK+T L L L S++K+ G V +G D+
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
+ + Q N M++ + +A+ R G+ + EL
Sbjct: 80 VVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKDKKEL------------------ 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR---GISGGERKRVTTGEM 337
+ I ++ LK L V D++ + +SGG+++R+
Sbjct: 121 ---------------DKIVEWALKKAALW----DEVKDDLKKSALKLSGGQQQRLCIART 161
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYD-----LF 392
+ + MDE ++ LD +T +I + + + + V +Q A D L
Sbjct: 162 IAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLM 221
Query: 393 DDIILLSDGQIVYQGPRE 410
D+I + + ++ P++
Sbjct: 222 GDLIEFNKTEKIFLEPQK 239
|
Length = 251 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 68/272 (25%), Positives = 107/272 (39%), Gaps = 83/272 (30%)
Query: 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD--------MGE 221
DVS + PG + ++G SGKTTLL AL+ +L +G V Y D + E
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSE 80
Query: 222 FVPERTA------AYISQHDNHIGEMTVRETLAFSA------RCQGVGSR-YELLTELAR 268
ER ++ QH M V SA R VG+R Y + A
Sbjct: 81 --AERRRLLRTEWGFVHQHPRDGLRMQV------SAGGNIGERLMAVGARHYGDIRATA- 131
Query: 269 RENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328
D+ +V E+ A + D++ SGG
Sbjct: 132 ------------------------------GDWLERV---EIDAARI--DDLPTTFSGGM 156
Query: 329 RKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPE 387
++R+ +V P L +FMDE + GLD S ++++ L+ V G AV+ +
Sbjct: 157 QQRLQIARNLVTHPRL-VFMDEPTGGLDVSVQARLLDLLRGLVR-ELGLAVVIV------ 208
Query: 388 TYD------LFDDIILLSDGQIVYQGPRELVL 413
T+D L ++++ G++V G + VL
Sbjct: 209 THDLAVARLLAHRLLVMKQGRVVESGLTDQVL 240
|
Length = 258 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.002
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 974 IEEVMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1026
++ + + I+SL VG G S LS Q++R+ IA L+ P I+ +DE T
Sbjct: 1328 VKRACKFAAIDEFIESLPNKYDTNVGPYGKS-LSGGQKQRIAIARALLREPKILLLDEAT 1386
Query: 1027 SGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQ 1057
S LD+ + ++ +T+ + D +T++ H+
Sbjct: 1387 SSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 67/259 (25%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T++ +++ IK G M LLGP GKTT+L +AG L+ G++ +G D V
Sbjct: 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-LEKP--TEGQIFIDGED----VTH 72
Query: 226 RTAAYISQHDNHI--------GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
R+ I Q D + M++ E + + + GV E +R EA
Sbjct: 73 RS---IQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA---- 120
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM 337
L+++ L D V D+ ISGG+++RV
Sbjct: 121 -------------------------LELVDLAGFEDRYV-DQ----ISGGQQQRVALARA 150
Query: 338 MV-GPALALFMDEISTGLDSS---TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393
++ P + LF DE + LD++ + + + L+Q +I S + + E + + D
Sbjct: 151 LILKPKVLLF-DEPLSNLDANLRRSMREKIRELQQQFNITS----LYVTHDQSEAFAVSD 205
Query: 394 DIILLSDGQIVYQG-PREL 411
+I+++ G+I+ G P+EL
Sbjct: 206 TVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 30/218 (13%), Positives = 74/218 (33%), Gaps = 18/218 (8%)
Query: 504 LLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFF 563
L+ + ++L+ + I + H + + +
Sbjct: 35 FLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGV 94
Query: 564 ATAMVMFNGLAEISMTIAKLPVFYKQRDFRFF--------PPWAYAIPSWILKIPISFLE 615
V+F+G+ S +++R+F + + + ++ L
Sbjct: 95 ILMSVLFSGIFSFSS------ALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLI 148
Query: 616 VAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAAT--GRSMVVANTFGTF 673
+ + + +++G LL L + +A+ L+ +T + A+ G
Sbjct: 149 AGLVLLVIAFLLGVPFLGSLLL--LLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNL 206
Query: 674 ALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAI 711
+L L L G E + W + + +P++YA +A+
Sbjct: 207 LILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDAL 244
|
Length = 286 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 41.7 bits (97), Expect = 0.002
Identities = 41/258 (15%), Positives = 89/258 (34%), Gaps = 17/258 (6%)
Query: 813 ISGRNSSSKS-------LILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQ 865
I G N S KS L+L RG+ + + DE +++P E +++
Sbjct: 4 IIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLPFLLDE--NEIEIPLEFEIE 61
Query: 866 GVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925
L D + G + L + R +
Sbjct: 62 EFLIDGIRYRYGFELDKEDILEELLYEYRKGEELLF---ERERSKESFEKSPEKKRELRG 118
Query: 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 985
+E ++ + + + LL +++ ++ V L
Sbjct: 119 LREVLLLLNLSLSSFLLLASLEILLSILLPFSFILGNLRNLRNIELKLLDLVKRLFLESD 178
Query: 986 LIQSLVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVR 1042
L++ L L + G+S ++ L + + L++ S++ +DEP +GL + ++ ++
Sbjct: 179 LLRLLKLL--IKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLK 236
Query: 1043 NTVDTGRTVVCTIHQPGI 1060
+ G ++ T H P +
Sbjct: 237 ELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1058
LS +++RL A L+ P +F+DE TS LD + + + ++ + G TV+ H+P
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGITVISVGHRP 148
Query: 1059 GIDIF 1063
+ F
Sbjct: 149 SLWKF 153
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.002
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL 202
+LKD+S I PG L+G +GK+TLL +AG+L
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 31/168 (18%)
Query: 879 SGAFRPG-VLTALMGVSGAGKTTLMDVLSGR--KTGGYITGNITISGYPKKQETFARISG 935
G G V+ + G +G GKTT +L+G G + + IS Y K Q I
Sbjct: 359 GGEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQ----YIKP 411
Query: 936 YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG 995
TV + LL S ++ S + E+++ ++L+ L+ V
Sbjct: 412 --------DYDGTVED-LLRSI----TDDLGSS---YYKSEIIKPLQLERLLDKNV---- 451
Query: 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
LS + +R+ IA L + + +DEP++ LD V + +R
Sbjct: 452 -KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498
|
Length = 590 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 19/161 (11%)
Query: 878 LSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYC 937
LS R G A++G +G+GK+TL +L+G +G + I +P + Y
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLHFGDY----SYR 85
Query: 938 EQNDIHSPFVTVYESL--------LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 989
Q I F SL + LRL +++ E R+ I E + V L P
Sbjct: 86 SQR-IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP--DH 142
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 143 ASYYPHM--LAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 34/164 (20%)
Query: 885 GVLTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISG---YPKK---QETFARISG 935
G +TAL+G SG GK+T++ L+ G + G + G Y + E RI
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGM 98
Query: 936 YCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV--- 991
+Q + PF ++YE++ + A ++ T M ELVE + L ++ V
Sbjct: 99 VFQQPN---PFPKSIYENIAFGA------RINGYTGDM-----DELVE-RSLRKAAVWDE 143
Query: 992 -----GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
G S LS Q++RL IA + P +I MDEP S LD
Sbjct: 144 CKDKLNESGYS-LSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 61/267 (22%), Positives = 109/267 (40%), Gaps = 50/267 (18%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE------ 221
L +V+ I+ G L+G SGK+TL+ L G L + SG++ +G D+ +
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLS 79
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
+ ++ + + E T+ + +AF G+ E+ R A
Sbjct: 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSE-----EEIENRVKRA-------- 126
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
M + L E D + +SGG+++RV ++
Sbjct: 127 ---MNIVG----------------LDYEDYKDKSPFE-----LSGGQKRRVAIAGVVAME 162
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE + GLD +I+N +K+ +H +I + + L D II+++ G
Sbjct: 163 PKILILDEPTAGLDPKGRDEILNKIKE-LHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221
Query: 402 QIVYQG-PRELV--LEFFESMGFKCPK 425
+ QG PRE+ +E ES+G P+
Sbjct: 222 KCELQGTPREVFKEVETLESIGLAVPQ 248
|
Length = 287 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 41/198 (20%)
Query: 858 MPQEMKLQG-VLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT----TLMDVLSG--RKT 910
MPQ+++L+ L+ L++G+S + G + AL+G SG+GK+ + +L R+T
Sbjct: 1 MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 911 GGYITGNITISGYPK-----KQETFARI-----SGYCEQNDIHSPFVTVYESLLYSAWLR 960
G + + G P + A I S + N +H+ E+ L
Sbjct: 61 A----GRVLLDGKPVAPCALRGRKIATIMQNPRSAF---NPLHTMHTHARETCLALG--- 110
Query: 961 LPPEVDSETRKMF---IEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1017
P + + T + +E +++L P +S +R+ IA+ L+
Sbjct: 111 KPADDATLTAALEAVGLENAARVLKLYPF-----------EMSGGMLQRMMIALALLCEA 159
Query: 1018 SIIFMDEPTSGLDARAAA 1035
I DEPT+ LD A A
Sbjct: 160 PFIIADEPTTDLDVVAQA 177
|
Length = 254 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM 219
L D+S + PG + +++GP +GKTT++ + GK G V + G D+
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDL 66
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNGHDMGEFVPE 225
LK ++ I ++T L+GP GK+TLL L L +K++G++T +G D+ +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 226 R----TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYEL 262
+ Q N M++ E +A+ R QG+ + L
Sbjct: 79 ADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVL 118
|
Length = 249 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.003
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 29/166 (17%)
Query: 879 SGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGY 936
G G + ++G +G GKTT + +L+G + G ++ +S Y K Q G
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE-DLKVS-Y-KPQYISPDYDG- 416
Query: 937 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 996
TV + L + S F E+++ + L+ L++ V
Sbjct: 417 -----------TVEDLL----RSAIRSAFGSS---YFKTEIVKPLNLEDLLERPV----- 453
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
LS + +R+ IA L + +DEP++ LD IV + +R
Sbjct: 454 DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI 372
DT + + + R SGGER+R+ +++ A + +DE + GLD T Q+++ + + +
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-- 145
Query: 373 NSGTAVISLLQPAPETYDL-----FDDIILLSDGQIVYQG 407
+I + T+ L D I+ L +G+I+ QG
Sbjct: 146 -KDKTLIWI------THHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1057
LS Q++R+ IA + P II +DE TS LD +++T++ D TV+ H
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHD 200
Query: 1058 PGIDIFDAFDELFLMKRGGQE 1078
+D D + +MK G E
Sbjct: 201 --LDEVALSDRVLVMKNGQVE 219
|
Length = 279 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 14/160 (8%)
Query: 887 LTALMGVSGAGKTTLMDVL---SGRKTGGYITGNITISG---YPKKQET--FARISGYCE 938
+TA++G SG GK+T + L S + + G + G Y + R G
Sbjct: 35 VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVF 94
Query: 939 QNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997
Q +PF +++YE++ Y +R+ ++ +E ++ L ++ + +
Sbjct: 95 QRP--NPFPMSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSAL- 149
Query: 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
GLS Q++RL IA L P ++ MDEP S LD A V
Sbjct: 150 GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 15/205 (7%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET---FA 931
LNG+S + G +++G +G+GK+T ++ G G + I G E
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLR 80
Query: 932 RISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
R G QN D TV + + + E R+ I+ V E + ++
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGM------ENQGIPREEMIKRVDEALLAVNMLDFK 134
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
P + LS Q++R+ +A + P II +DE TS LD +MR + + +
Sbjct: 135 TREP--ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192
Query: 1051 VVCTIHQPGIDIFDAFDELFLMKRG 1075
V +I +D + D + +MK G
Sbjct: 193 TVLSITH-DLDEAASSDRILVMKAG 216
|
Length = 277 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.004
Identities = 66/262 (25%), Positives = 104/262 (39%), Gaps = 76/262 (29%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
L VS ++PG + LLG +GK+TL+ L+G SG + +G + V +
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDG----KPVAFSS 76
Query: 228 A--------AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
A + Q + + ++V E + L E RR G+
Sbjct: 77 PRDALAAGIATVHQELSLVPNLSVAENIF-------------LGREPTRR---FGL---- 116
Query: 280 DID-VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE-- 336
ID M+ A E L LGL++ DT+VGD +S +R+ V E
Sbjct: 117 -IDRKAMRRRARE----------LLARLGLDIDPDTLVGD-----LSIAQRQMV---EIA 157
Query: 337 --MMVGPALALFMDEISTGLDSSTT---FQIVNCLKQHVHINSGTAV--IS--LLQPAPE 387
+ + L +DE + L T F ++ LK G A+ IS L E
Sbjct: 158 RALSFDARV-LILDEPTAALTVKETERLFDLIRRLKA-----QGVAIIYISHRL----DE 207
Query: 388 TYDLFDDIILLSDGQIVYQGPR 409
+++ D I +L DG++V P
Sbjct: 208 VFEIADRITVLRDGRVVGTRPT 229
|
Length = 500 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 19/99 (19%)
Query: 325 SGGERKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLK--QHVH------INSG 375
SGG+R+R+ ++ P L L +DE ++ LD S Q+++ L+ Q H I+
Sbjct: 428 SGGQRQRIAIARALILKPELIL-LDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD 486
Query: 376 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
AV+ L +I++ DG+IV QGP E V
Sbjct: 487 LAVVRALC---------HRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.004
Identities = 62/288 (21%), Positives = 106/288 (36%), Gaps = 57/288 (19%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLAL--------AGKLDSSLKVSGRVTYNGH 217
T+L VS +T L+GP SGKTT L L + + + GR +N
Sbjct: 35 TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94
Query: 218 DMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
D+ EF R + Q N M++ + + R + R E R E G+
Sbjct: 95 DVLEF--RRRVGMLFQRPNPF-PMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGL-- 149
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM 337
+ + D + D R +SGG+++ +
Sbjct: 150 -----------------WDAVKD--------------RLSDSPFR-LSGGQQQLLCLART 177
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397
+ L +DE ++ LD +TT +I ++ + VI + + + D L
Sbjct: 178 LAVNPEVLLLDEPTSALDPTTTEKIEEFIRS---LADRLTVIIVTHNLAQAARISDRAAL 234
Query: 398 LSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSR-KDQKQ 444
DG++V +GP E + F PK A ++ ++ KD K+
Sbjct: 235 FFDGRLVEEGPTEQL--------FSSPKHAETARYVAGLSGDVKDAKR 274
|
Length = 276 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 25/124 (20%), Positives = 40/124 (32%), Gaps = 5/124 (4%)
Query: 284 YMKAIA-TEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT----GEMM 338
+ AI G + G V A + +SGGE++
Sbjct: 37 ILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALAS 96
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398
+ P +DEI GLD + + +H+ + VI+ L E D I +
Sbjct: 97 LKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKKV 156
Query: 399 SDGQ 402
G
Sbjct: 157 ITGV 160
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 0.004
Identities = 21/73 (28%), Positives = 30/73 (41%)
Query: 177 PGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDN 236
PG + L++GPP SGKTTL ALA +L + + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 237 HIGEMTVRETLAF 249
GE+ +R LA
Sbjct: 61 GSGELRLRLALAL 73
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.004
Identities = 67/250 (26%), Positives = 93/250 (37%), Gaps = 76/250 (30%)
Query: 157 ILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216
++P +K+ ILKD+S PG +LG +GK+TLL +AG +D + G
Sbjct: 15 VVPPKKQ---ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG-VDKE--------FEG 62
Query: 217 HDMGE--FVPERTAAYISQH---DNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN 271
E P Y+ Q D E TVRE + +GV L N
Sbjct: 63 ----EARPAPGIKVGYLPQEPQLDP---EKTVRENVE-----EGVAEVKAALDRF----N 106
Query: 272 EAGIK---PDPDIDVYMKAIATEGQEANVITDYYLKVLG-------LEVCADTM---VGD 318
E PD D D E QE + LE+ D + D
Sbjct: 107 EIYAAYAEPDADFDALAAEQG-ELQEI-------IDAADAWDLDSQLEIAMDALRCPPWD 158
Query: 319 EMIRGISGGERKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLKQH 369
+ +SGGER+RV AL L +DE + LD+ + V L+Q
Sbjct: 159 AKVTKLSGGERRRV---------ALCRLLLEKPDMLLLDEPTNHLDAES----VAWLEQF 205
Query: 370 VHINSGTAVI 379
+H GT V
Sbjct: 206 LHDYPGTVVA 215
|
Length = 556 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS---LKVSGRVTY 214
+LK+++ I+ G M + G SGKT+LL+ + G+L+ S +K SGR+++
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISF 102
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1444 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-258 Score=2382.77 Aligned_cols=1339 Identities=53% Similarity=0.921 Sum_probs=1256.5
Q ss_pred cchhHhhhHHHHhhCCChhhhhhcccccC-CCCcceeccCCcChHhhHHHHHHhhhcccccHHHHHHHHHHHHhhcCCCC
Q 000524 36 EDDEEALKWAALEKLPTYNRLRKGLLTTS-RGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDL 114 (1444)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1444)
+||||+|||||+|||||++| +++.+. ++ ++|+.+++..+++.++++..+..++|+++++.++++|++++ ++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~ 83 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFES---EVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--EL 83 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhccC---cccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cC
Confidence 45999999999999999999 555432 22 79999999999999999999999999999999999999998 89
Q ss_pred CccEEEEeceEEEEEEecCCCcCCChhHHHHHHHHHHHhhhccCCCccccceEeeceeeEEeCCeEEEEEcCCCCcHHHH
Q 000524 115 PKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTL 194 (1444)
Q Consensus 115 p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTL 194 (1444)
|.++++++++.+++++..| ||+.|...+.++.++...+.. ++.+.+||+|+||.++||+|++++||||||||||
T Consensus 84 p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttl 157 (1391)
T KOG0065|consen 84 PTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTL 157 (1391)
T ss_pred CceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHH
Confidence 9999999999999998766 999999999999988766644 5566889999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCeecEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcC
Q 000524 195 LLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274 (1444)
Q Consensus 195 L~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~ 274 (1444)
|++|+|.++..+...|+|+|||++.+++.+++.++|++|+|.|+|+|||||||+|+++|++++.|++ +..|+|++.
T Consensus 158 lkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~- 233 (1391)
T KOG0065|consen 158 LKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA- 233 (1391)
T ss_pred HHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH-
Confidence 9999999998777789999999999999999999999999999999999999999999999999887 555665531
Q ss_pred CCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCC
Q 000524 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGL 354 (1444)
Q Consensus 275 ~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgL 354 (1444)
..+|++++++||++|+||+|||+++||+||||||||+||++++++++++||||+|+||
T Consensus 234 ----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GL 291 (1391)
T KOG0065|consen 234 ----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGL 291 (1391)
T ss_pred ----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccc
Confidence 2689999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHH
Q 000524 355 DSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQ 434 (1444)
Q Consensus 355 Ds~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~ 434 (1444)
|++|+.+|+++||+++|..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||.||+++++|||++
T Consensus 292 DSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt 371 (1391)
T KOG0065|consen 292 DSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLT 371 (1391)
T ss_pred cHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcchhhhhhcccCCCCccCCHHHHHHHHHhCcchhhhHHhhcCcccCcccccccccccccCCchHHHHHHHHHHHHH
Q 000524 435 EVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELL 514 (1444)
Q Consensus 435 ~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l 514 (1444)
++++++++.++|.++..|+.+.+++|+.+.|.+++.+.++..+++.+.++.+.++.++..++|..+.|+|++.|+.|+++
T Consensus 372 ~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~ 451 (1391)
T KOG0065|consen 372 EVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFL 451 (1391)
T ss_pred HhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcChhHHHHHHHHHHHHHHHHHHhhhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHhhhcCCc
Q 000524 515 LMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRF 594 (1444)
Q Consensus 515 ~~~R~~~~~~~~~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~~~~~~vf~k~r~~~~ 594 (1444)
+++||.+++++++++.+++|+++|++|+++.+ .+..++..+.|++||++++.+|++++++++++.++|||+|||+..|
T Consensus 452 l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~f 529 (1391)
T KOG0065|consen 452 LMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSF 529 (1391)
T ss_pred HHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccc
Confidence 99999999999999999999999999999885 4566788999999999999999999999999999999999999999
Q ss_pred cChhhhHHHHHHHHhhHHHHHHHHHHhhhhhccccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 000524 595 FPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFA 674 (1444)
Q Consensus 595 y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~ 674 (1444)
|++||+.++++++++|..++++++|.+|+||++|+.+++++||.++++++++++|++++||+++++++++..|+.++++.
T Consensus 530 Y~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~ 609 (1391)
T KOG0065|consen 530 YPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGIL 609 (1391)
T ss_pred cChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCccchhhhHHHHHHHcHHHHHHHHHHHHhhcCCcccccC------------CC---CcccchHHHHhc
Q 000524 675 LLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFT------------PN---SYESIGVQVLKS 739 (1444)
Q Consensus 675 ~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~~~~~~------------~~---~~~~~g~~~L~~ 739 (1444)
++++++++||+|++.+||+||+|++|++|++|+++++++|||++++|.|.. .. ...+.|.++++.
T Consensus 610 ~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g 689 (1391)
T KOG0065|consen 610 LLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSG 689 (1391)
T ss_pred HHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEec
Confidence 999999999999999999999999999999999999999999999999971 11 124678999999
Q ss_pred cCcc-----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccccccccccccccccccccCCCCCCccc
Q 000524 740 RGFF-----AHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDIS 814 (1444)
Q Consensus 740 ~~~~-----~~~~~~w~~~g~l~g~~v~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1444)
+++. ...+|+|+++|+++||.++|++..++++.|.++..+.++.+..+....+....... .+ ....
T Consensus 690 ~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~--------~~-~~~~ 760 (1391)
T KOG0065|consen 690 RDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAG--------SS-SEIE 760 (1391)
T ss_pred ccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhcc--------cc-cccc
Confidence 8888 77889999999999999999999999999999998888776544333221110000 00 0000
Q ss_pred CCCCCcchhhhhcccCCCCCccCcccCCCCceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCC
Q 000524 815 GRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVS 894 (1444)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~s 894 (1444)
......+.++.++..|+.+..++++||.|.+++|-+++.+| +++++|+||||.++||.+|||||+|
T Consensus 761 -----------~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~S 826 (1391)
T KOG0065|consen 761 -----------KLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGES 826 (1391)
T ss_pred -----------ccccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCC
Confidence 00001111345788899999999999999999999888776 5678999999999999999999999
Q ss_pred CCchHHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 000524 895 GAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFI 974 (1444)
Q Consensus 895 GaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v 974 (1444)
|||||||||+|+||++.|.++|+|+|||.|+++..|+|.+|||+|+|+|.|.+||||.|.|+|+||+|.+++.+++.++|
T Consensus 827 GAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yV 906 (1391)
T KOG0065|consen 827 GAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYV 906 (1391)
T ss_pred CCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q 000524 975 EEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1053 (1444)
Q Consensus 975 ~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p-~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~ 1053 (1444)
++|++.++|++++|.+||.+| +|||++|||||+||+||++|| .||||||||||||+++|..|++++|+++++|+||||
T Consensus 907 e~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlC 985 (1391)
T KOG0065|consen 907 EEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILC 985 (1391)
T ss_pred HHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999 999999999999999999999 899999999999999999999999999999999999
Q ss_pred EecCCCHHHHHhcceEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCcccCCCCCCccceEEEeccccchhhccccHHHH
Q 000524 1054 TIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDI 1133 (1444)
Q Consensus 1054 t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~~~~~~~~~~yF~~~~g~~~~~~~~npad~~l~v~~~~~~~~~~~~~~~~ 1133 (1444)
||||||.++|+.||++++|++||++||+||+|++|+++++|||+++|++ |++..||||||||+++.+.+.+.+.||+++
T Consensus 986 TIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~a~~ 1064 (1391)
T KOG0065|consen 986 TIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDFAEI 1064 (1391)
T ss_pred EecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccHHHH
Confidence 9999999999999999999999999999999999999999999999985 666569999999999999988889999999
Q ss_pred HHhcHHHHHHHHHHHHhcCCCCC-CCCCCCCCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhHhhcc
Q 000524 1134 FRCSELYRRNKALIEELSKPTPG-SKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWD 1212 (1444)
Q Consensus 1134 ~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~ 1212 (1444)
|++|++++++++++++++.++++ +.+..+.++|++|+|.|++.|+|||+++|||+|+|+.+|++++++.||++|++||+
T Consensus 1065 w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~ 1144 (1391)
T KOG0065|consen 1065 WKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWK 1144 (1391)
T ss_pred HhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeee
Confidence 99999999999999999999998 78888899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHhHHHHHhHHHHHHHHHHHhhhhhcchhhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhhee
Q 000524 1213 MGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVI 1292 (1444)
Q Consensus 1213 ~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~vf~rE~~~~~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i 1292 (1444)
.|+ ++||++|.+|++|+++++.+.+++..++|.+..||.++||||++||||+.||++||+++|+||.++++++|.+|
T Consensus 1145 ~g~---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~ 1221 (1391)
T KOG0065|consen 1145 VGH---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLI 1221 (1391)
T ss_pred cCC---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 994 68999999999999999999998888889899999999999999999999999999999999999999999999
Q ss_pred eecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhhhhhc
Q 000524 1293 VYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWAN 1372 (1444)
Q Consensus 1293 ~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~is 1372 (1444)
+|+|+||++++.+|+||++++++..+|++++|||+.+++||.++|+++++++++++++||||++|++.||.||+||||+|
T Consensus 1222 ~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~ls 1301 (1391)
T KOG0065|consen 1222 TYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLS 1301 (1391)
T ss_pred eeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcccccC----------CCCcHHHHHHhhcC----CccCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 000524 1373 PVAWTLYGLIASQFGDVEDQME----------NGETVKHFLRDYFG----FKHDFLGLVAGVLTCFVALFGFVFALGIKQ 1438 (1444)
Q Consensus 1373 p~~y~~~~l~~~~~~~~~~~~~----------~g~~~~~~~~~~~g----~~~~~~~~~~~il~~~~~~f~~~~~~~l~~ 1438 (1444)
|++|.++|++..++||.+..|. +|+||++|+++++| |.++.......+..+|.+++.+++.+++|+
T Consensus 1302 P~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y 1381 (1391)
T KOG0065|consen 1302 PVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKY 1381 (1391)
T ss_pred cHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHH
Confidence 9999999999999999999883 45799999999999 999998888888999999999999999999
Q ss_pred hcccCC
Q 000524 1439 LNFQRR 1444 (1444)
Q Consensus 1439 ~~~~~r 1444 (1444)
.|+|||
T Consensus 1382 ~~~wrn 1387 (1391)
T KOG0065|consen 1382 LNFWRN 1387 (1391)
T ss_pred HHHHHh
Confidence 999987
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-240 Score=2381.21 Aligned_cols=1439 Identities=60% Similarity=1.046 Sum_probs=1284.3
Q ss_pred CCCccccccccccccccccccCccccccC---C----CccchhHhhhHHHHhhCCChhhhhhcccccC-----CCC---c
Q 000524 4 SHDSYLASTSLRGNISRWRTSSVGAFSKS---L----REEDDEEALKWAALEKLPTYNRLRKGLLTTS-----RGE---A 68 (1444)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~ 68 (1444)
.||++.++-+.+.+.++|.. +++|++. + ..|||||+|+|||+||||||+|+|++++.+. .|+ .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1470)
T PLN03140 4 RGGSMRRSISRSVSRSSRNM--EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLH 81 (1470)
T ss_pred CcccHHHHHHHHhhhhhhhh--hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccc
Confidence 45555555444444456744 6888442 1 3678999999999999999999999999652 122 2
Q ss_pred ceeccCCcChHhhHHHHHHhhhcccccHHHHHHHHHHHHhhcCCCCCccEEEEeceEEEEEEecCCCcCCChhHHHHHHH
Q 000524 69 FEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVF 148 (1444)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~ 148 (1444)
.|+|+++|+.++++.+++++++++++|+++|++++++|.|++|+++|++||||+||+|++++.++++.+||++|.+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~ 161 (1470)
T PLN03140 82 KEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIA 161 (1470)
T ss_pred cccccccCChHHHHHHHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCccccceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCccceE
Q 000524 149 EDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTA 228 (1444)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~ 228 (1444)
+.+.+.++..++++.+++||+|+||.++|||+++|+||||||||||||+|+|+++|+.+++|+|+|||+++++..+++.+
T Consensus 162 ~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i 241 (1470)
T PLN03140 162 ESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTS 241 (1470)
T ss_pred HHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhccccee
Confidence 98876666545555678899999999999999999999999999999999999998777899999999999877777889
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCC
Q 000524 229 AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1444)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (1444)
+||+|+|.|++++||+|||.|+++|++.+.++++..+..+++++.++.|+.++|.+||+.+.++.+.+..++++++.+||
T Consensus 242 ~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL 321 (1470)
T PLN03140 242 AYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGL 321 (1470)
T ss_pred EEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCC
Confidence 99999999999999999999999998877666666667778888888888899999999988888888899999999999
Q ss_pred cccccccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhH
Q 000524 309 EVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388 (1444)
Q Consensus 309 ~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~ 388 (1444)
++|+||.||++++++|||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||++++
T Consensus 322 ~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i 401 (1470)
T PLN03140 322 DICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPET 401 (1470)
T ss_pred ccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998766889999999999999
Q ss_pred HhhcCeEEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCcchhhhhhcccCCCCccCCHHHHHHHHHhC
Q 000524 389 YDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSF 468 (1444)
Q Consensus 389 ~~~fD~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1444)
+++||+|++|++|+++|+||++++.+||+++||+||+++|+|||+++++++++++++|.....|+++.++++++++|+++
T Consensus 402 ~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s 481 (1470)
T PLN03140 402 FDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSF 481 (1470)
T ss_pred HHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999988878887766777778999999999999
Q ss_pred cchhhhHHhhcCcccCcccccccccccccCCchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhhccccCC
Q 000524 469 HVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHK 548 (1444)
Q Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtlf~~~~~~~ 548 (1444)
+.++.+.++++.+.++...++.....++|..++++|+++|++|++++++||+..++.++++.+++|+++|++|++++.+.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~ 561 (1470)
T PLN03140 482 HVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHT 561 (1470)
T ss_pred HHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99888888877776666556666666789999999999999999999999999999999999999999999999987665
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHhhhcCCccChhhhHHHHHHHHhhHHHHHHHHHHhhhhhccc
Q 000524 549 HSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIG 628 (1444)
Q Consensus 549 ~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g 628 (1444)
.+..++..+.|++||++++.+|+++.+++.++.+||||+|||+..||++|+|+++++++++|+.++++++|++++|||+|
T Consensus 562 ~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~G 641 (1470)
T PLN03140 562 RNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIG 641 (1470)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Confidence 55567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccCccchhhhHHHHHHHcHHHHHH
Q 000524 629 CDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQ 708 (1444)
Q Consensus 629 ~~~~~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~ 708 (1444)
+++++++||.|+++++++++++.++|++++++++++.+|+.+++++++++++|+||++++++||+||+|++|+||+.|++
T Consensus 642 l~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~ 721 (1470)
T PLN03140 642 FAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGF 721 (1470)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcccccC-CCCcccchHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccc
Q 000524 709 NAIVANEFLGYSWKKFT-PNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEE 787 (1444)
Q Consensus 709 ~al~~nef~~~~~~~~~-~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~~~~~~l~~~~~~~~~~~~~~~~ 787 (1444)
+|+++|||.+..|.+.. .+.....|.++|+.+|+...+.|+|++++++++++++|+++++++++|.++.......+..+
T Consensus 722 eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~ 801 (1470)
T PLN03140 722 NALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEE 801 (1470)
T ss_pred HHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCcccccc
Confidence 99999999998886432 23345789999999999998999999999999999999999999999998766655543322
Q ss_pred ccccccccc-cc-cccccccCCC--CCCcc-cCCCCC-c-chhhhhcccCCCCCccCcccCCCCceeEEeceeeeeecch
Q 000524 788 SESNKQDNR-IR-GTVQLSARGE--SGEDI-SGRNSS-S-KSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQ 860 (1444)
Q Consensus 788 ~~~~~~~~~-~~-~~~~~~~~~~--~~~~~-~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 860 (1444)
......... .. .......... ..+.. ...... . ..............++++.+|+.|..++|+|++|.++.+.
T Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~ 881 (1470)
T PLN03140 802 TAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPA 881 (1470)
T ss_pred chhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCc
Confidence 111000000 00 0000000000 00000 000000 0 0000000000112334566788899999999999999887
Q ss_pred hhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEEecC
Q 000524 861 EMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQN 940 (1444)
Q Consensus 861 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~ 940 (1444)
+++..+..++++.+|+|||+.++||+++||||||||||||||++|+|+.++|..+|+|.+||.+.++..+++.+|||+|+
T Consensus 882 ~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~ 961 (1470)
T PLN03140 882 EMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQN 961 (1470)
T ss_pred cccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccc
Confidence 65555554556789999999999999999999999999999999999987777899999999987655567789999999
Q ss_pred CCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEE
Q 000524 941 DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1020 (1444)
Q Consensus 941 ~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il 1020 (1444)
|.+++.+||+|+|.|++.+|.+.+.+.+++++.++++++.++|.+++|+.+|.+++++|||||||||+||++|+++|+||
T Consensus 962 d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL 1041 (1470)
T PLN03140 962 DIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSII 1041 (1470)
T ss_pred cccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999999988876666677778899999999999999999999888999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCCCcchhHHHHHHHhCCC
Q 000524 1021 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPG 1100 (1444)
Q Consensus 1021 lLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~~~~~~~~~~yF~~~~g 1100 (1444)
||||||+|||+.++..+++.|++++++|+|||||+|||+.++++.||++++|++||+++|+||.+++++++++||++++|
T Consensus 1042 ~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g 1121 (1470)
T PLN03140 1042 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPG 1121 (1470)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCC
Confidence 99999999999999999999999998899999999999988999999999999889999999999999999999999988
Q ss_pred cccCCCCCCccceEEEeccccchhhccccHHHHHHhcHHHHHHHHHHHHhcCCCCCCCCCCCCCccCCCHHHHHHHHHHH
Q 000524 1101 VEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWK 1180 (1444)
Q Consensus 1101 ~~~~~~~~npad~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R 1180 (1444)
+++||+++||||||+|+++.+.+...+.||++.|++|++++++++.++++..+.++.++..++++|++|+|+|++.|+||
T Consensus 1122 ~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R 1201 (1470)
T PLN03140 1122 VPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWK 1201 (1470)
T ss_pred CCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHH
Confidence 88899999999999999987766666679999999999999998888888777666666666788999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHhHhhccCCCCCCChHhHHHHHhHHHHHHHHHHHhhhhhcchhhhhhhhHHHhhh
Q 000524 1181 QHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREK 1260 (1444)
Q Consensus 1181 ~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~vf~rE~ 1260 (1444)
+++++||||.|+.+|+++++++|+++|++||+++++..+++++++++|++|++++|+++.++++++|.+..||+||+|||
T Consensus 1202 ~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr 1281 (1470)
T PLN03140 1202 QWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRER 1281 (1470)
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998877789999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHhhhheeeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 000524 1261 AAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIV 1340 (1444)
Q Consensus 1261 ~~~~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~ 1340 (1444)
++|+|++.+|++|++++|+|+.++++++|++|+|||+||++++.+||||+++++++.++++++|+++++++||.++|+.+
T Consensus 1282 ~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~ 1361 (1470)
T PLN03140 1282 AAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIF 1361 (1470)
T ss_pred hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCcchhhhhhhhhcHHHHHHHHHHHHHhCCcccccC-C----CCcHHHHHHhhcCCccCchh
Q 000524 1341 STLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQME-N----GETVKHFLRDYFGFKHDFLG 1415 (1444)
Q Consensus 1341 ~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~-~----g~~~~~~~~~~~g~~~~~~~ 1415 (1444)
+++++++|++||||++|+++||+||+|+||+||++|+++|+++|||+|.+..|+ + ++++++|++++|||+++++|
T Consensus 1362 ~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 1441 (1470)
T PLN03140 1362 AAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMG 1441 (1470)
T ss_pred HHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCccccc
Confidence 999999999999999999999999999999999999999999999999887653 2 36899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 000524 1416 LVAGVLTCFVALFGFVFALGIKQLNFQRR 1444 (1444)
Q Consensus 1416 ~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1444 (1444)
++++|+++|+++|++++++++|++|||||
T Consensus 1442 ~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1442 PVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-189 Score=1899.14 Aligned_cols=1290 Identities=31% Similarity=0.544 Sum_probs=1068.7
Q ss_pred cccHHHHHHHHHHHHhhcCCCCC--ccEEEEeceEEEEEEecCCCcCCChhHHHHHHHHHHHhhhccCCCccccceEeec
Q 000524 93 EVDNEKFLLKLKSRIDRVGIDLP--KVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKD 170 (1444)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~p--~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 170 (1444)
+.|++++++.++++.++.+...| +++|+|+||+|++ ...+....||++|.+.+.+..+...+. ..+++++++||+|
T Consensus 2 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~ 79 (1394)
T TIGR00956 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKP 79 (1394)
T ss_pred CCCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeC
Confidence 46788888877777777776666 9999999999999 444566789999998887775543321 1234456789999
Q ss_pred eeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCeecEEEECCccCCCCC--ccceEEEEcCCCCCCCCCCHHHHH
Q 000524 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS-LKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMTVRETL 247 (1444)
Q Consensus 171 vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~-~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1444)
+|+.++|||+++|+||||||||||||+|+|+.++. ...+|+|.+||+++++.. .++.++||+|+|.|++++||+|||
T Consensus 80 vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l 159 (1394)
T TIGR00956 80 MDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETL 159 (1394)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHH
Confidence 99999999999999999999999999999997432 125999999999875432 245699999999999999999999
Q ss_pred HHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccccchh
Q 000524 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGG 327 (1444)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (1444)
.|+++++.+..+.+ ...+.+ ..+..++.+++.+||++++||.||++.+++||||
T Consensus 160 ~f~~~~~~~~~~~~---~~~~~~-----------------------~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 213 (1394)
T TIGR00956 160 DFAARCKTPQNRPD---GVSREE-----------------------YAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGG 213 (1394)
T ss_pred HHHHHhCCCCCCCC---CCCHHH-----------------------HHHHHHHHHHHHcCcccccCceeCCCcCCCCCcc
Confidence 99988764221100 000000 0112356789999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeEEEec
Q 000524 328 ERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1444)
Q Consensus 328 qrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G 407 (1444)
|||||+||++|+.+|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||+++++++||+|++|++|+++|+|
T Consensus 214 erkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G 293 (1394)
T TIGR00956 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293 (1394)
T ss_pred cchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEEC
Confidence 99999999999999999999999999999999999999999987667899999999999999999999999999999999
Q ss_pred ChhhHHHHHHhcCCCCCCCCChhHHHHhhcCcchhhhhhcccCCCCccCCHHHHHHHHHhCcchhhhHHhhcCcccCc--
Q 000524 408 PRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKS-- 485 (1444)
Q Consensus 408 ~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 485 (1444)
+++++.+||+++||+||++.|+|||+++++++.+++ ++...+. ....+.++++++|++++.++++.++++.+.++.
T Consensus 294 ~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~-~~~~~e~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 371 (1394)
T TIGR00956 294 PADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQ-IKPGYEK-KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSE 371 (1394)
T ss_pred CHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhh-ccccccc-cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccc
Confidence 999999999999999999999999999999876432 2221111 123578899999999887776665544322110
Q ss_pred -------------ccccccccccccCCchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhhccccCCCccc
Q 000524 486 -------------KSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLT 552 (1444)
Q Consensus 486 -------------~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtlf~~~~~~~~~~~ 552 (1444)
...+.....+.|..++|+|++.|++|+++.++||+..++.++++.+++|+++|++|++.+.+ ..
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~---~~ 448 (1394)
T TIGR00956 372 SDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKN---TS 448 (1394)
T ss_pred hhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC---ch
Confidence 00011223456889999999999999999999999999999999999999999999976543 34
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHhhhcCCccChhhhHHHHHHHHhhHHHHHHHHHHhhhhhccccCCC
Q 000524 553 DGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPN 632 (1444)
Q Consensus 553 ~~~~~~g~lf~~~~~~~f~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~ 632 (1444)
+.+.+.|++|+++++.+|.++.++..++.+|++|+|||..++|++++|++|+.+.++|+.++.+++|++++|||+|+.++
T Consensus 449 ~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~ 528 (1394)
T TIGR00956 449 DFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRT 528 (1394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCccc
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccCccchhhhHHHHHHHcHHHHHHHHHH
Q 000524 633 AGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIV 712 (1444)
Q Consensus 633 ~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~ 712 (1444)
+++||.++++++++.+++.+++++++++++++.+|+.++++.++++++++||+++.++||+||+|++|+||+.|++++++
T Consensus 529 ~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~ 608 (1394)
T TIGR00956 529 AGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLM 608 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcccccC--C----------------------CCcccchHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 000524 713 ANEFLGYSWKKFT--P----------------------NSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFT 768 (1444)
Q Consensus 713 ~nef~~~~~~~~~--~----------------------~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~~~~ 768 (1444)
+|||.+..+.|.. | +.....|.++|.. ++.....|+|.+++++++++++|.++.+
T Consensus 609 ~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~ 687 (1394)
T TIGR00956 609 VNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYI 687 (1394)
T ss_pred HhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999888741 1 1123578899985 3334456899999999999999999999
Q ss_pred HHHHHhcccCCCcccccccccccccccccccccccccCCCCCCcccCCCCCcchhhhhcccCCCCCccCcccCCCCceeE
Q 000524 769 MAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLT 848 (1444)
Q Consensus 769 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (1444)
++++|.++.......+..+........ ....+......+.++...... .. ...+.+.. ..............++
T Consensus 688 l~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~e~~~~~~~-~~--~~~~~~~~-~~~~~~~~~~~~~~l~ 761 (1394)
T TIGR00956 688 LLTEFNKGAKQKGEILVFRRGSLKRAK--KAGETSASNKNDIEAGEVLGS-TD--LTDESDDV-NDEKDMEKESGEDIFH 761 (1394)
T ss_pred HHHHhccccCCCCceEeeccccccchh--hcccccccccccccccccCCC-Cc--cccccccc-cccccccccCCCceEE
Confidence 999998855443322211110000000 000000000000000000000 00 00000000 0000000001123579
Q ss_pred EeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc-eEEEEEEEcCccCCc
Q 000524 849 FDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITISGYPKKQ 927 (1444)
Q Consensus 849 ~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~ 927 (1444)
|+|++|.++.+ .+++.+|+|||++++|||++||||||||||||||++|+|+.+++ +.+|+|.+||.+...
T Consensus 762 ~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~ 832 (1394)
T TIGR00956 762 WRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS 832 (1394)
T ss_pred EEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh
Confidence 99999987532 12457999999999999999999999999999999999997654 356999999998753
Q ss_pred ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHH
Q 000524 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRL 1007 (1444)
Q Consensus 928 ~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl 1007 (1444)
.+++.+|||+|+|.+++.+||+|+|.|++.+|.+...+.+++++.++++++.++|.+++|+.+|.++. +||||||||+
T Consensus 833 -~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl 910 (1394)
T TIGR00956 833 -SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRL 910 (1394)
T ss_pred -hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHH
Confidence 46778999999999999999999999999998876666777778899999999999999999987653 8999999999
Q ss_pred HHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCCCc
Q 000524 1008 TIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGR 1086 (1444)
Q Consensus 1008 ~ia~~L~~~p~-illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~~~ 1086 (1444)
+||+||+.+|+ ||||||||||||+.++..|++.|++++++|+|||||+|||+..+++.||++++|++||+++|+|+.++
T Consensus 911 ~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 99999999997 99999999999999999999999999888999999999999778899999999999889999999999
Q ss_pred chhHHHHHHHhCCCcccCCCCCCccceEEEeccccchhhccccHHHHHHhcHHHHHHHHHHHHhcCCCCCCC---CCCCC
Q 000524 1087 HSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSK---DLYFP 1163 (1444)
Q Consensus 1087 ~~~~~~~yF~~~~g~~~~~~~~npad~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~ 1163 (1444)
+++++++||+++ |.++||+++|||||+||+++.+.+.....||.+.|++|++++++.+.++++..+..... +....
T Consensus 991 ~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1394)
T TIGR00956 991 NSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDAL 1069 (1394)
T ss_pred ccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccc
Confidence 989999999997 55679999999999999998765444456899999999998887766655443322111 11122
Q ss_pred CccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhHhhccCCCCCCChHhHHHHHhHHHHHHHHHHHhhhh
Q 000524 1164 TQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCS 1243 (1444)
Q Consensus 1164 ~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~ 1243 (1444)
++|++|+|+|++.|++|+++++||||.|+.+|+++++++|+++|++||++++ ++++++|++|++|+++++.++.+ .
T Consensus 1070 ~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~~-~ 1145 (1394)
T TIGR00956 1070 SKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPLI-Q 1145 (1394)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 4789999999999999999999999999999999999999999999999986 47899999999999888877763 4
Q ss_pred hcchhhhhhhhHH-HhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhheeeecccccccchhH-------HHHHHHHHHH
Q 000524 1244 SVQPVVSVERTVF-YREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEK-------FSWYFFFMYI 1315 (1444)
Q Consensus 1244 ~~~~~~~~er~vf-~rE~~~~~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~-------f~~~~~~~~~ 1315 (1444)
+++|.+..||.+| +|||++|+|++.+|++|++++|+|+.++++++|++|+|||+||++++.+ |++|++++++
T Consensus 1146 ~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~ 1225 (1394)
T TIGR00956 1146 QYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTM 1225 (1394)
T ss_pred HhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHH
Confidence 5667788888885 8999999999999999999999999999999999999999999988766 9999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhhhhhcHHHHHHHHHHHHHhCCcccccC-
Q 000524 1316 TLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQME- 1394 (1444)
Q Consensus 1316 ~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~- 1394 (1444)
..++++++|+++++++||.++|+.+++++++++++||||++|+++||.||+|+||+||++|+++|++.|||+|.+..|.
T Consensus 1226 ~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~ 1305 (1394)
T TIGR00956 1226 FFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKV 1305 (1394)
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987773
Q ss_pred ---------CCCcHHHHH-------------------------------HhhcCCccCchhhHHHHHHHHHHHHHHHHHH
Q 000524 1395 ---------NGETVKHFL-------------------------------RDYFGFKHDFLGLVAGVLTCFVALFGFVFAL 1434 (1444)
Q Consensus 1395 ---------~g~~~~~~~-------------------------------~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~ 1434 (1444)
+|+||++|+ ...+|+++++.|+|++|+++|++++ +++++
T Consensus 1306 ~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~ 1384 (1394)
T TIGR00956 1306 KELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATV 1384 (1394)
T ss_pred cccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHH
Confidence 245665443 1346888999999999999999988 78888
Q ss_pred HHHhh
Q 000524 1435 GIKQL 1439 (1444)
Q Consensus 1435 ~l~~~ 1439 (1444)
++.+.
T Consensus 1385 ~l~~~ 1389 (1394)
T TIGR00956 1385 FFYWL 1389 (1394)
T ss_pred hhheE
Confidence 88765
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-96 Score=922.25 Aligned_cols=574 Identities=31% Similarity=0.564 Sum_probs=504.5
Q ss_pred CceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc-eEEEEEEEcC
Q 000524 844 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITISG 922 (1444)
Q Consensus 844 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g 922 (1444)
+..+.|+|+++..+.+.. ..+++|+||||+++|||++|||||||||||||||+|+||..++ ..+|+|++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG 94 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG 94 (613)
T ss_pred cceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC
Confidence 467899999998865421 3468999999999999999999999999999999999998764 7899999999
Q ss_pred ccCCcccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 923 YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 923 ~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
++.+...+++.+|||+|+|.+.|++||+|+|.|+|.+|+|...+.++++++|+++++.+||.+++|+++|+++.+|+|||
T Consensus 95 ~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGG 174 (613)
T KOG0061|consen 95 RPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGG 174 (613)
T ss_pred ccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccc
Confidence 88888889999999999999999999999999999999999889999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
|||||+||.+|+.||+||||||||||||+.++..++++|+++|++|||||||+||||.++|++||++++|.+ |+++|+|
T Consensus 175 ErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~G 253 (613)
T KOG0061|consen 175 ERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYSG 253 (613)
T ss_pred hhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 6999999
Q ss_pred CCCcchhHHHHHHHhCCCcccCCCCCCccceEEEecccc-chhhccccHHHHHHh-------cHHHHHHHHHHHHhcCCC
Q 000524 1083 PLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASS-QEVALGVDFNDIFRC-------SELYRRNKALIEELSKPT 1154 (1444)
Q Consensus 1083 ~~~~~~~~~~~yF~~~~g~~~~~~~~npad~~l~v~~~~-~~~~~~~~~~~~~~~-------s~~~~~~~~~~~~~~~~~ 1154 (1444)
+. +++.+||+++| . +||+++|||||++|+++.. .... -.+..+.++. ....+......+.+...
T Consensus 254 ~~----~~~~~ff~~~G-~-~~P~~~Npadf~l~l~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 325 (613)
T KOG0061|consen 254 SP----RELLEFFSSLG-F-PCPELENPADFLLDLLSVDSGTRE-LEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTS- 325 (613)
T ss_pred CH----HHHHHHHHhCC-C-CCCCcCChHHHHHHHHccCCCchh-HHhHHHHHHHhhhccccchhhhhHHHHhhhcccc-
Confidence 97 68999999995 4 5999999999999998842 1100 0111111111 10111100001111111
Q ss_pred CCCCCCCCCCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhHhhccCCCCCCChHhHHHHHhHHHHHH
Q 000524 1155 PGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAI 1234 (1444)
Q Consensus 1155 ~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~ 1234 (1444)
++ .+.....+||.|++.+++|.+++.+|||.+...|+++.+++|+++|++||+++++ ..+++++.|++|+.+
T Consensus 326 ---~~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~---~~~~~~~~g~~~~~~ 397 (613)
T KOG0061|consen 326 ---KK--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND---AKGIQNRLGLFFFIL 397 (613)
T ss_pred ---cc--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHHHH
Confidence 11 1111278999999999999999999999999999999999999999999999753 567779999999999
Q ss_pred HHHHHhhhhhcchhhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhheeeecccccccchhHHHHHHHHHH
Q 000524 1235 IFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMY 1314 (1444)
Q Consensus 1235 ~~~~~~~~~~~~~~~~~er~vf~rE~~~~~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~ 1314 (1444)
.++.+..+...++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|++.++
T Consensus 398 ~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~ 477 (613)
T KOG0061|consen 398 SFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIIL 477 (613)
T ss_pred HHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 99988888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhhhhhcHHHHHHHHHHHHHhCCcccccC
Q 000524 1315 ITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQME 1394 (1444)
Q Consensus 1315 ~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~ 1394 (1444)
+..+.++++|++++++.||...|..+++++...++||+||+++.++||.||+|++|+|+++|++||++.|||++....|.
T Consensus 478 ~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~ 557 (613)
T KOG0061|consen 478 LSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCF 557 (613)
T ss_pred HHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997333332
Q ss_pred -C-----CCcHHHHHHhhcCCccCchhhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 000524 1395 -N-----GETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQR 1443 (1444)
Q Consensus 1395 -~-----g~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~ 1443 (1444)
. ..+..+++. .++++.++.|.++.++++|+++|++++|+++++.-..+
T Consensus 558 ~~~~~~~~~~~~~~l~-~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 558 LSGNLCCESTGEDVLK-QLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred cCcCCcccccHHHHHH-hcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 1 235566664 58999999999999999999999999999999765544
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-95 Score=922.94 Aligned_cols=563 Identities=29% Similarity=0.494 Sum_probs=500.8
Q ss_pred ceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc-eEEEEEEEcCccCCcccccceEEEEecCCCCCCCCcH
Q 000524 871 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTV 949 (1444)
Q Consensus 871 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv 949 (1444)
++.+|+|||++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.+...+++.+|||+|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999987543 3589999999987666677889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC-CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000524 950 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1444)
Q Consensus 950 ~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~-~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsg 1028 (1444)
+||+.|++.++.+.....+++++.++++++.+||.+++|+.+|+++ .++||||||||++||+||+++|+||||||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999999988777777888889999999999999999999864 679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCcccCCCCC
Q 000524 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGY 1108 (1444)
Q Consensus 1029 LD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~~~~~~~~~~yF~~~~g~~~~~~~~ 1108 (1444)
||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|.||. +++.+||+++| .+||++.
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~----~~~~~~f~~~g--~~~p~~~ 269 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSP----DQAVPFFSDLG--HPCPENY 269 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCH----HHHHHHHHHcC--CCCCCCC
Confidence 9999999999999999988999999999999899999999999985 899999997 68899999995 3699999
Q ss_pred CccceEEEeccccchhh-----ccccHHHHHHhcHHHHHHHHHHHHhcCCCC---CCCCCCCCCccCCCHHHHHHHHHHH
Q 000524 1109 NPATWMLEVTASSQEVA-----LGVDFNDIFRCSELYRRNKALIEELSKPTP---GSKDLYFPTQYSQSAFTQFMACLWK 1180 (1444)
Q Consensus 1109 npad~~l~v~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Q~~~l~~R 1180 (1444)
|||||++|+++...+.+ ...++.+.|++|+.+++..+.++....+.+ ........++|..++++|++.|++|
T Consensus 270 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R 349 (617)
T TIGR00955 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKR 349 (617)
T ss_pred ChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHH
Confidence 99999999987543221 113566777777766655444332211111 1111112346789999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHhHhhccCCCCCCChHhHHHHHhHHHHHHHHHHHhhhhhcchhhhhhhhHHHhhh
Q 000524 1181 QHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREK 1260 (1444)
Q Consensus 1181 ~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~vf~rE~ 1260 (1444)
+++++||||.++.+|+++++++|+++|++||++++ ++++++++.|++|++++++++.++..+.+.++.||++|+||+
T Consensus 350 ~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~ 426 (617)
T TIGR00955 350 SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRET 426 (617)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999975 467899999999999999998888788899999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHhhhheeeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 000524 1261 AAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIV 1340 (1444)
Q Consensus 1261 ~~~~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~ 1340 (1444)
.+|+|++.+|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|++++++..++++++|+++++++|+..+|..+
T Consensus 427 ~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~ 506 (617)
T TIGR00955 427 RSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTV 506 (617)
T ss_pred cCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCcchhhhhhhhhcHHHHHHHHHHHHHhCCccc-ccCCC-------CcHHHHHHhhcCCccC
Q 000524 1341 STLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVED-QMENG-------ETVKHFLRDYFGFKHD 1412 (1444)
Q Consensus 1341 ~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~-~~~~g-------~~~~~~~~~~~g~~~~ 1412 (1444)
+++++.++++|+||+++.++||+||+|++|+||++|++++++.|||++.+. +|.++ .+ ++++.+.||++.+
T Consensus 507 ~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~-g~~~l~~~g~~~~ 585 (617)
T TIGR00955 507 GPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSS-GEVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcC-hHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999999999998775 56421 12 3566678999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 000524 1413 FLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1444 (1444)
Q Consensus 1413 ~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1444 (1444)
+.|.+++++++|+++|+++++++||+....+|
T Consensus 586 ~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 586 DLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999998766665
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-95 Score=917.80 Aligned_cols=580 Identities=24% Similarity=0.397 Sum_probs=486.6
Q ss_pred CceeEEeceeeeeecchhh----------------hhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcC
Q 000524 844 PHSLTFDEVVYSVDMPQEM----------------KLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 844 ~~~~~~~~v~~~~~~~~~~----------------~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g 907 (1444)
+.++.|.|++|.++..... +...+..+++.+|+|||++++|||++||+|||||||||||++|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999998654210 000112345679999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEEcCccCCcccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc
Q 000524 908 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 987 (1444)
Q Consensus 908 ~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~ 987 (1444)
+..++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|++.++.+...+.+++++.++++++.+||.+++
T Consensus 117 ~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 876544689999999886543 3456899999999999999999999998888765556666777899999999999999
Q ss_pred cccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcc
Q 000524 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFD 1067 (1444)
Q Consensus 988 ~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD 1067 (1444)
|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 99999888899999999999999999999999999999999999999999999999988899999999999978999999
Q ss_pred eEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCcccCCCCCCccceEEEeccccchhh------c---cccHHHHHHhcH
Q 000524 1068 ELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVA------L---GVDFNDIFRCSE 1138 (1444)
Q Consensus 1068 ~v~ll~~gg~~~y~G~~~~~~~~~~~yF~~~~g~~~~~~~~npad~~l~v~~~~~~~~------~---~~~~~~~~~~s~ 1138 (1444)
++++|++ |+++|.|+. +++++||+++| . +||+++|||||++|+++...+.. . ..+..+.|+++.
T Consensus 276 ~iilL~~-G~iv~~G~~----~~~~~~f~~~G-~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (659)
T PLN03211 276 SVLVLSE-GRCLFFGKG----SDAMAYFESVG-F-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL 348 (659)
T ss_pred eEEEecC-CcEEEECCH----HHHHHHHHHCC-C-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhc
Confidence 9999985 799999997 68999999996 3 59999999999999987532110 0 011233443211
Q ss_pred HHHHHHHHHHH--hcC-CCC-----CCCCCC-CCCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhHh
Q 000524 1139 LYRRNKALIEE--LSK-PTP-----GSKDLY-FPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSL 1209 (1444)
Q Consensus 1139 ~~~~~~~~~~~--~~~-~~~-----~~~~~~-~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~ 1209 (1444)
.+...+.++. ... +.+ ..+... ....+..+||+|+++|++|++++ ||++.+..+|+++++++|+++|++
T Consensus 349 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~l 426 (659)
T PLN03211 349 -APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLM 426 (659)
T ss_pred -cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 010 000 001100 11235678999999999999988 999999999999999999999999
Q ss_pred hccCCCCCCChHhHHHHHhHHHHHHHHHHHhhhhhcchhhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhh
Q 000524 1210 FWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVY 1289 (1444)
Q Consensus 1210 f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~vf~rE~~~~~Y~~~~y~~a~~l~eiP~~~~~~~~~ 1289 (1444)
||+++ ..+++++.|++|++++++++.+++++++.++.||+||+|||++|+|++++|++|++++|+|+.++.+++|
T Consensus 427 f~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if 501 (659)
T PLN03211 427 WWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIF 501 (659)
T ss_pred HhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99984 4689999999999999988888888889999999999999999999999999999999999999999999
Q ss_pred heeeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhhh
Q 000524 1290 CVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYY 1369 (1444)
Q Consensus 1290 ~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~ 1369 (1444)
++|+|||+||++++.+||+|+++++++.++++++|+++++++||.++|+.++++++.++++|+||+++ +||+||+|++
T Consensus 502 ~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ 579 (659)
T PLN03211 502 LTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIK 579 (659)
T ss_pred HhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 7999999999
Q ss_pred hhcHHHHHHHHHHHHHhCCccc-----ccCCC----CcHHHHHHhhcCCccCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 000524 1370 WANPVAWTLYGLIASQFGDVED-----QMENG----ETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLN 1440 (1444)
Q Consensus 1370 ~isp~~y~~~~l~~~~~~~~~~-----~~~~g----~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~ 1440 (1444)
|+||++|++++++.|||++.+. .|+.. .....++. ..++++...|.++++|++|+++|++++|++|+++|
T Consensus 580 ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 580 YISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE-EDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred HhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch-hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999987542 45311 11112332 23444557899999999999999999999999888
Q ss_pred c
Q 000524 1441 F 1441 (1444)
Q Consensus 1441 ~ 1441 (1444)
|
T Consensus 659 ~ 659 (659)
T PLN03211 659 H 659 (659)
T ss_pred C
Confidence 6
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-92 Score=955.88 Aligned_cols=561 Identities=25% Similarity=0.410 Sum_probs=496.5
Q ss_pred CceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCC--ceEEEEEEEcCccCCc--ccccceEEEEecCCCCCC
Q 000524 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG--GYITGNITISGYPKKQ--ETFARISGYCEQNDIHSP 945 (1444)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~ 945 (1444)
.++.+|+|||+.++|||+++|+||||||||||||+|+|+..+ .+.+|+|.+||.+..+ ..+++.++|++|+|.|++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 456799999999999999999999999999999999998632 2468999999987643 234567999999999999
Q ss_pred CCcHHHHHHHHHHhcCCC----CCCHHHHH-HHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEE
Q 000524 946 FVTVYESLLYSAWLRLPP----EVDSETRK-MFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1020 (1444)
Q Consensus 946 ~lTv~e~l~f~a~lr~~~----~~~~~~~~-~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il 1020 (1444)
.+||+|+|.|++.+|.|. ....+++. ..++++++.+||.+++|+.+|++.+++|||||||||+||++|+.+|+||
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999999888653 23344433 3357799999999999999999889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCCCcchhHHHHHHHhCC
Q 000524 1021 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIP 1099 (1444)
Q Consensus 1021 lLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~~~~~~~~~~yF~~~~ 1099 (1444)
||||||+|||+.++..+++.|++++++ |+|||+++|||+.++++.||++++|++ |+++|+||. +++.+||+++|
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG 306 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMG 306 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcC
Confidence 999999999999999999999999875 999999999998899999999999986 899999997 68999999995
Q ss_pred CcccCCCCCCccceEEEeccccch-------h---hccccHHHHHHhcHHHHHHHHHHHHhcCCC---------------
Q 000524 1100 GVEKIKDGYNPATWMLEVTASSQE-------V---ALGVDFNDIFRCSELYRRNKALIEELSKPT--------------- 1154 (1444)
Q Consensus 1100 g~~~~~~~~npad~~l~v~~~~~~-------~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--------------- 1154 (1444)
. +||+++|||||++|+++++.+ . ....+|++.|++|+.++++.+.+++.....
T Consensus 307 -~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1394)
T TIGR00956 307 -F-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVA 384 (1394)
T ss_pred -C-CCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHh
Confidence 3 699999999999999876431 1 123579999999999887766554321110
Q ss_pred CCCCCCCCCCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhHhhccCCCCCCChHhHHHHHhHHHHHH
Q 000524 1155 PGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAI 1234 (1444)
Q Consensus 1155 ~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~ 1234 (1444)
..++.....+.|..|+|+|+++|++|+++++||||.++.+|+++++++|+++|++||++++ ++++++++.|++|+++
T Consensus 385 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~ 461 (1394)
T TIGR00956 385 KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAI 461 (1394)
T ss_pred hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHH
Confidence 0011122334688999999999999999999999999999999999999999999999986 4578999999999999
Q ss_pred HHHHHhhhhhcchhhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhheeeecccccccchhHHHHHHHHHH
Q 000524 1235 IFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMY 1314 (1444)
Q Consensus 1235 ~~~~~~~~~~~~~~~~~er~vf~rE~~~~~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~ 1314 (1444)
+++++.++..+ +.+..||+||+|||.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++
T Consensus 462 ~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~ 540 (1394)
T TIGR00956 462 LFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILF 540 (1394)
T ss_pred HHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHH
Confidence 99999887665 45567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhhhhhcHHHHHHHHHHHHHhCCcccccC
Q 000524 1315 ITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQME 1394 (1444)
Q Consensus 1315 ~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~ 1394 (1444)
++.++++++|+++++++||..+|+.++++++.++++|+||++|.++||+||+|++|+||++|++++++.|||++.+.+|.
T Consensus 541 l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~ 620 (1394)
T TIGR00956 541 ICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECS 620 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777662
Q ss_pred ----C---------------------C---CcHHHHHHhhcCCccCchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000524 1395 ----N---------------------G---ETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNF 1441 (1444)
Q Consensus 1395 ----~---------------------g---~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1441 (1444)
. | .++.+|+...||++++++|+|++|+++|+++|++++++++++++.
T Consensus 621 ~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 621 QYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred ccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0 1 156799988899999999999999999999999999999999873
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-91 Score=938.91 Aligned_cols=590 Identities=23% Similarity=0.393 Sum_probs=501.0
Q ss_pred CCCceeEEeceeeeeecchh-----------------hh-hcc---ccCCceEEeeccEEEEeCCeEEEEecCCCCchHH
Q 000524 842 FEPHSLTFDEVVYSVDMPQE-----------------MK-LQG---VLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTT 900 (1444)
Q Consensus 842 ~~~~~~~~~~v~~~~~~~~~-----------------~~-~~~---~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTT 900 (1444)
.+...+.|+|+++..+.... .. ..+ ..+.++.+|+||||.++|||+++|+|||||||||
T Consensus 127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 34567999999877652110 00 001 1223567999999999999999999999999999
Q ss_pred HHhhhcCCCCCc-eEEEEEEEcCccCCcccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCC-------CCHHHH--
Q 000524 901 LMDVLSGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE-------VDSETR-- 970 (1444)
Q Consensus 901 Ll~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~-------~~~~~~-- 970 (1444)
||++|+|+.++. ..+|+|.+||.+..+...++.++||+|+|.|++.+||+|+|.|++.++.+.. ...+++
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 999999986542 4689999999987554446789999999999999999999999988764321 111111
Q ss_pred ----------------------HHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000524 971 ----------------------KMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1444)
Q Consensus 971 ----------------------~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsg 1028 (1444)
+..++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++|||||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 1236789999999999999999998999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCcccCCCC
Q 000524 1029 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDG 1107 (1444)
Q Consensus 1029 LD~~s~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~~~~~~~~~~yF~~~~g~~~~~~~ 1107 (1444)
||+.++..+++.|+++++ .|+|||+++|||+.+++++||++++|++ |+++|+||. +++.+||+++| . +||++
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~----~~~~~yF~~lG-f-~cP~~ 439 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPR----DHILEFFESCG-F-KCPER 439 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCH----HHHHHHHHHcC-C-CCCCC
Confidence 999999999999999987 4899999999999899999999999985 899999997 68999999996 3 69999
Q ss_pred CCccceEEEeccccch-h-----------hccccHHHHHHhcHHHHHHHHHHHHhcCCCCCCCCCCCCCccCCCHHHHHH
Q 000524 1108 YNPATWMLEVTASSQE-V-----------ALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFM 1175 (1444)
Q Consensus 1108 ~npad~~l~v~~~~~~-~-----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~ 1175 (1444)
+|||||++|+++.... . ....+|++.|++|+.+++..+.++.........+.....++|..++|.|++
T Consensus 440 ~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~ 519 (1470)
T PLN03140 440 KGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLK 519 (1470)
T ss_pred CChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHH
Confidence 9999999999986432 1 112468999999998877665443211111111111123468999999999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhHhhccCCCCCCChHhHHHHHhHHHHHHHHHHHhhhhhcchhhhhhhhH
Q 000524 1176 ACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTV 1255 (1444)
Q Consensus 1176 ~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v 1255 (1444)
.|++|+++..||||.+...|+++.+++|+++|++||+++.+..+..+.+...|++|++++++.+.++.. ++.+..||+|
T Consensus 520 ~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~-l~~~~~~r~v 598 (1470)
T PLN03140 520 ACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAE-LALMIQRLPV 598 (1470)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccch
Confidence 999999999999999999999999999999999999998654445566788999999998888877655 4777889999
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhheeeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 000524 1256 FYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHH 1335 (1444)
Q Consensus 1256 f~rE~~~~~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~ 1335 (1444)
|+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||.|+++++++.++++++++++++++|+..
T Consensus 599 f~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~ 678 (1470)
T PLN03140 599 FYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMI 678 (1470)
T ss_pred hHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCcchhhhhhhhhcHHHHHHHHHHHHHhCCcccc---cC-CC-CcHHHHHHhhcCCc
Q 000524 1336 IAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQ---ME-NG-ETVKHFLRDYFGFK 1410 (1444)
Q Consensus 1336 ~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~---~~-~g-~~~~~~~~~~~g~~ 1410 (1444)
+|+.++++++.++++|+||++|+++||+||+|++|+||++|+++++++|||.+.... |. .. .++.+|+ +.+|+.
T Consensus 679 ~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L-~~~g~~ 757 (1470)
T PLN03140 679 IANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVL-NIFDVF 757 (1470)
T ss_pred HHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHH-HhcCcC
Confidence 999999999999999999999999999999999999999999999999999765532 21 12 2455666 778997
Q ss_pred cC--chhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 000524 1411 HD--FLGLVAGVLTCFVALFGFVFALGIKQLN 1440 (1444)
Q Consensus 1411 ~~--~~~~~~~il~~~~~~f~~~~~~~l~~~~ 1440 (1444)
.+ +.|+++++|++|+++|+++++++|++++
T Consensus 758 ~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 758 TDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 54 5699999999999999999999999987
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-86 Score=827.95 Aligned_cols=563 Identities=26% Similarity=0.474 Sum_probs=503.1
Q ss_pred CceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc-eEEEEEEEcCccCCcccccceEEEEecCCCCCCCCc
Q 000524 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 948 (1444)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lT 948 (1444)
.+..+|+|+||.++||+++.++||+||||||||++|+|..+.. ...|+|.+||++.++..-++.++|+.|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3457999999999999999999999999999999999975432 235799999999776555788999999999999999
Q ss_pred HHHHHHHHHHhcCCCC----CCHHHHH-HHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000524 949 VYESLLYSAWLRLPPE----VDSETRK-MFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023 (1444)
Q Consensus 949 v~e~l~f~a~lr~~~~----~~~~~~~-~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLD 1023 (1444)
|+|+|.|+++++.+.. .++.++. +..+.+++.+||++|+||+||+..++|+||||||||+||.+++++|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999998732 2222222 2578999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCcc
Q 000524 1024 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVE 1102 (1444)
Q Consensus 1024 EPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~~~~~~~~~~yF~~~~g~~ 1102 (1444)
|+|+|||+.|+.++.+.||++++. +.|+++++|||+.+++++||+|++|.+ |++||+||. .++++||+++|.
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~Gf-- 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMGF-- 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcCc--
Confidence 999999999999999999999865 899999999999999999999999997 899999998 588999999863
Q ss_pred cCCCCCCccceEEEeccccchh-----------hcc-ccHHHHHHhcHHHHHHHHHHHHhcCCCCCCCCCCCCCccCCCH
Q 000524 1103 KIKDGYNPATWMLEVTASSQEV-----------ALG-VDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSA 1170 (1444)
Q Consensus 1103 ~~~~~~npad~~l~v~~~~~~~-----------~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1170 (1444)
.||+..++|||+.++++.-.+. ... .+|++.|.+|+.+++....++........++.....++|..|+
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 6999999999999999832211 112 5799999999999887655433222222333334456899999
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhHhhccCCCCCCChHhHHHHHhHHHHHHHHHHHhhhhhcchhhh
Q 000524 1171 FTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVS 1250 (1444)
Q Consensus 1171 ~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 1250 (1444)
|.|+++|+.|.++.+.||..|...++++.+++|+++|++|++... .+..+.+.+.|++||++++..+++++.+ +...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHH
Confidence 999999999999999999999999999999999999999999983 5667899999999999999999888776 5566
Q ss_pred hhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhheeeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000524 1251 VERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAI 1330 (1444)
Q Consensus 1251 ~er~vf~rE~~~~~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~ 1330 (1444)
+.|+||+|||...+|++++|.++..+.++|..++.+++|.+|+||++||.+++++||.|+++++++..++.+++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhhhhhcHHHHHHHHHHHHHhCCcccccC-CC-------------
Q 000524 1331 TPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQME-NG------------- 1396 (1444)
Q Consensus 1331 ~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~-~g------------- 1396 (1444)
+++..+|+.++++.+....+++||+||.++||+||+|++|+||+.|++++++.|||++.+.+|+ .|
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999888884 11
Q ss_pred --------C---cHHHHHHhhcCCccCchhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000524 1397 --------E---TVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQ 1442 (1444)
Q Consensus 1397 --------~---~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~ 1442 (1444)
. .+.+|++..|+|++.|.|++++|++||.++|.++..+++.|+|.-
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 1 346788888999999999999999999999999999999999853
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-80 Score=776.25 Aligned_cols=583 Identities=31% Similarity=0.505 Sum_probs=492.7
Q ss_pred CCccEEEEeceEEEEEEecCCCcCCChhHHHHHHHHHHHhhhccCCCccccceEeeceeeEEeCCeEEEEEcCCCCcHHH
Q 000524 114 LPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTT 193 (1444)
Q Consensus 114 ~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKST 193 (1444)
...++++|+|+++++... .+ ..+++|+||||.++|||++||+||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----------------------------~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK----------------------------SK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC----------------------------CC-ccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 457889999999997542 11 4578999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCeecEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhc
Q 000524 194 LLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA 273 (1444)
Q Consensus 194 LL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~ 273 (1444)
||++|+|+.+++..++|+|++||++.+....++.+|||.|+|.++|++||+|||.|+++++.+.. ..
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~------ 138 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LS------ 138 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CC------
Confidence 99999999987667899999999887766678899999999999999999999999999875431 11
Q ss_pred CCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCC
Q 000524 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTG 353 (1444)
Q Consensus 274 ~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsg 353 (1444)
.++.+.++|++++.|||.+|+||+||+...|||||||||||+||..|+.+|+||||||||||
T Consensus 139 ------------------~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 139 ------------------KEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred ------------------HHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 12234678999999999999999999998899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHH
Q 000524 354 LDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1444)
Q Consensus 354 LDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl 433 (1444)
||+.++.++++.|+++|+. |+|+|++||||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999986 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcc--hhhhhhcccCCCCccCCHHHHHHHHHhCcchhhhHHhhcCcccCcccccccccccccCCchHHHHHHHHHH
Q 000524 434 QEVTSRK--DQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISR 511 (1444)
Q Consensus 434 ~~v~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R 511 (1444)
.++.+.. .+..... .......+.++......+.......... +. .........++|.|+..+.+|
T Consensus 280 l~l~s~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~s~~~q~~~L~~R 346 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEA--------VRIAKLINKFSQTDNLKKTLEALEKSLS----TS-KKVEIGTSPSWWTQFKILLKR 346 (613)
T ss_pred HHHHccCCCchhHHhH--------HHHHHHhhhccccchhhhhHHHHhhhcc----cc-cccccccCCcHHHHHHHHHHH
Confidence 9987743 1110000 0000011111100000000000000000 00 000011167899999999999
Q ss_pred HHHHhhcChhHHHHHHHHHHHHHHHHHHhhhccccCCCccccchhHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHhhh
Q 000524 512 ELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLA-EISMTIAKLPVFYKQR 590 (1444)
Q Consensus 512 ~~l~~~R~~~~~~~~~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~-~~~~~~~~~~vf~k~r 590 (1444)
.+..+.|++.+...|.++.+.+++++|++|++.+... .......|++|+.+.+..|..+. .++.+..++++|.||+
T Consensus 347 ~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~---~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~ 423 (613)
T KOG0061|consen 347 SLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDA---KGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRET 423 (613)
T ss_pred HhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999874332 23346788999988888776665 5888899999999999
Q ss_pred cCCccChhhhHHHHHHHHhhHHHHHHHHHHhhhhhccccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 000524 591 DFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF 670 (1444)
Q Consensus 591 ~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~ 670 (1444)
..+.|+.++|++++.+.++|+.++.+++|.+++|||+|++++..+|+.+.++.++..+++.+++.+++++.++...|.++
T Consensus 424 ~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~ 503 (613)
T KOG0061|consen 424 SSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSL 503 (613)
T ss_pred hcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccCccchhhhHHHHHHHcHHHHHHHHHHHHhhcCCcccccCC--CCcccchHHHHhccCcccchhH
Q 000524 671 GTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTP--NSYESIGVQVLKSRGFFAHAYW 748 (1444)
Q Consensus 671 ~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~~~~~~~--~~~~~~g~~~L~~~~~~~~~~~ 748 (1444)
+++..+.+++++||+++.+.||.||.|+.|+|+..|++++++.|||.+....|... ..+...|.++++..++...+
T Consensus 504 ~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 581 (613)
T KOG0061|consen 504 GPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSS-- 581 (613)
T ss_pred HHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccc--
Confidence 99999999999999999999999999999999999999999999999744444332 34567788999998886654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000524 749 YWLGLGALFGFILLFNLGFTMAITFLN 775 (1444)
Q Consensus 749 ~w~~~g~l~g~~v~f~~~~~~~l~~~~ 775 (1444)
.|.++.+++++.++|.++.++++++..
T Consensus 582 ~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 582 FWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 468889999999999999999998864
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-79 Score=780.18 Aligned_cols=569 Identities=27% Similarity=0.417 Sum_probs=482.1
Q ss_pred cccceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCccceEEEEcCCCCCCCCC
Q 000524 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 162 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1444)
+.++++|+|+|+.++|||+++|+|||||||||||++|+|+.+++...+|+|.+||++++....++.++||+|+|.+++++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 44577999999999999999999999999999999999998876556899999999886544567899999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc-
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM- 320 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~- 320 (1444)
||+|||.|+++++.+.... + .+...+++++++.+||++++||.||++.
T Consensus 115 TV~e~l~f~~~~~~~~~~~-------~------------------------~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVT-------K------------------------KEKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCCC-------H------------------------HHHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 9999999998876322100 0 0122357889999999999999999864
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
.++|||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++ .++|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 789999999999999999999999999999999999999999999999876 5789999999999999999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCcchhhhhhcccCCCCccCCHHHHHHHHHhCcchhhhHHhhcC
Q 000524 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1444)
Q Consensus 401 G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (1444)
|+++|+|+++++.+||+++|++||++.|||||+.++++....... . .....+++.+.|+.+...++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 999999999999999999999999999999999998865432110 0 112234566666665544443332221
Q ss_pred cccCcc---cccccccccccCCchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhhccccCCCccccchhH
Q 000524 481 PFDKSK---SHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIY 557 (1444)
Q Consensus 481 ~~~~~~---~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~ 557 (1444)
...... ..........|..+++.|+..+++|.++..+||+..+..++++.+++++++|++|++.+.+ ..+.+..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~---~~~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT---QKGVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC---HHHHHHH
Confidence 111000 0001112345778999999999999999999999999999999999999999999976543 2345667
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhcchhHHhhhcCCccChhhhHHHHHHHHhhHHHHHHHHHHhhhhhccccCCCHhHH
Q 000524 558 AGALFFATAMVMFNGL-AEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRF 636 (1444)
Q Consensus 558 ~g~lf~~~~~~~f~~~-~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f 636 (1444)
.|++|+.++...|.++ ..+..+..++++|+||+..++|++++|++++.+.++|+.++.+++|.+++|||+|+++++++|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 8999999888887765 446667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccCccchhhhHHHHHHHcHHHHHHHHHHHHhh
Q 000524 637 FKQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEF 716 (1444)
Q Consensus 637 f~~~l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef 716 (1444)
|.+++++++...++.++++++++++++..+|..++++..+++++|+||+++.++||+||+|++|+||+.|++++++.|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-cccCCC---CcccchHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000524 717 LGYSW-KKFTPN---SYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFL 774 (1444)
Q Consensus 717 ~~~~~-~~~~~~---~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~~~~~~l~~~ 774 (1444)
.+..+ .|...+ .+...|.++|+.+|+... ++|.++++++++.++|.++.+++|++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98776 443211 133468999999998764 447899999999999999999999875
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-79 Score=774.99 Aligned_cols=609 Identities=21% Similarity=0.340 Sum_probs=472.2
Q ss_pred CCccEEEEeceEEEEEEecCCCcCCChhHHHHHHHHHHHhhhccCCCccccceEeeceeeEEeCCeEEEEEcCCCCcHHH
Q 000524 114 LPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTT 193 (1444)
Q Consensus 114 ~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKST 193 (1444)
.+.++++|+|+++.+.......+...+ ...+..--...+ ...+..++++|+|+|+.++|||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~~----~~~~~~~~~~~~-l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSNI----KRILGHKPKISD-ETRQIQERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCccccccc----cccccccccccc-ccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 458999999999997543101111110 000000000000 011223467999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCeecEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhc
Q 000524 194 LLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA 273 (1444)
Q Consensus 194 LL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~ 273 (1444)
||++|+|+++|+ ..+|+|.+||+++... .++.++||+|+|.+++.+||+||+.|++.++.... ..+
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~~----- 175 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LTK----- 175 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CCH-----
Confidence 999999998874 3589999999987532 23568999999999999999999999876542110 000
Q ss_pred CCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCC
Q 000524 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTG 353 (1444)
Q Consensus 274 ~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsg 353 (1444)
.+.+.+++++++.+||++++||.||+...++|||||||||+||++|+.+|++|||||||+|
T Consensus 176 -------------------~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 176 -------------------QEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred -------------------HHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 0112346789999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHH
Q 000524 354 LDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1444)
Q Consensus 354 LDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl 433 (1444)
||+.++.++++.|+++++ .++|+|+++|||..+++++||+|++|++|+++|+|+.+++.+||+++||+||++.|||||+
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 999999999999999876 5789999999988889999999999999999999999999999999999999999999999
Q ss_pred HhhcCcchhhhhhcccCCCCccCCHHHHHHHHHhCcchhhhHHhhcC---cccCcc-----cccc-cccccccCCchHHH
Q 000524 434 QEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT---PFDKSK-----SHRA-ALTTEVYGAGKREL 504 (1444)
Q Consensus 434 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~-----~~~~-~~~~~~y~~s~~~~ 504 (1444)
.++.+...+.+.....+.+ ...+++.+.|++... ....+..+. ...... ..+. ......+..++|.|
T Consensus 316 ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9998764321100000111 112334444432211 111111100 000000 0000 00112345789999
Q ss_pred HHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhhccccCCCccccchhHHHHHHHHHHHHHH-HHHHHHHHHhhcc
Q 000524 505 LKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMF-NGLAEISMTIAKL 583 (1444)
Q Consensus 505 ~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~lf~~~~~~~f-~~~~~~~~~~~~~ 583 (1444)
+..+++|.++. +|+..+...|+++.+++|+++|++|++.+ ..+.+...|++||.+++..+ ..+..++.+..+|
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888 78888888999999999999999999653 23567788999999877555 5567888888999
Q ss_pred hhHHhhhcCCccChhhhHHHHHHHHhhHHHHHHHHHHhhhhhccccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 000524 584 PVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRS 663 (1444)
Q Consensus 584 ~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~~ 663 (1444)
++|+|||..++|++++|++|+.+.++|+.++.+++|.+++|||+|+.+++++||.+++++++..+++.++++++++++++
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhccccCccchhhhHHHHHHHcHHHHHHHHHHHHhhcCCc-----ccccCCCCcccchHHHHh
Q 000524 664 MVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYS-----WKKFTPNSYESIGVQVLK 738 (1444)
Q Consensus 664 ~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~-----~~~~~~~~~~~~g~~~L~ 738 (1444)
+..|+.++++..+++++|+||+++ +||+||+|++|+||+.|+++++++|||.+.+ ..|..+......+..++.
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~ 623 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE 623 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch
Confidence 999999999999999999999997 7999999999999999999999999997643 234322111111111222
Q ss_pred ccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000524 739 SRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLN 775 (1444)
Q Consensus 739 ~~~~~~~~~~~w~~~g~l~g~~v~f~~~~~~~l~~~~ 775 (1444)
...+. ....|.+++++++++++|+++.+++|++.+
T Consensus 624 ~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 624 EDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22222 234678889999999999999999997653
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-75 Score=732.91 Aligned_cols=783 Identities=22% Similarity=0.275 Sum_probs=424.4
Q ss_pred CCCccccceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCC
Q 000524 158 LPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQH 234 (1444)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1444)
+|+|+ +..||+|+|+.|++|+.++|+|||||||||++++|.+.++|+ +|+|.++|+++.+++. +..+|.|+|+
T Consensus 360 YPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~Qe 435 (1228)
T KOG0055|consen 360 YPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQE 435 (1228)
T ss_pred CCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeec
Confidence 35554 577999999999999999999999999999999999999998 9999999999988765 4789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccc
Q 000524 235 DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT 314 (1444)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1444)
|.+|. .||+|||.|+.. |...++..+|+... +..--+..|++..||
T Consensus 436 PvlF~-~tI~eNI~~G~~-------------------------dat~~~i~~a~k~a--------na~~fi~~lp~g~~T 481 (1228)
T KOG0055|consen 436 PVLFA-TTIRENIRYGKP-------------------------DATREEIEEAAKAA--------NAHDFILKLPDGYDT 481 (1228)
T ss_pred hhhhc-ccHHHHHhcCCC-------------------------cccHHHHHHHHHHc--------cHHHHHHhhHHhhcc
Confidence 97665 699999998631 22222222222111 111123457889999
Q ss_pred cccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCe
Q 000524 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1444)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1444)
.||++++ .|||||||||+|||||+.+|+|||||||||+||+.+...+.+.|++.. .|+|+|+ +.|..+.+-+ +|+
T Consensus 482 ~vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTiv-VaHRLStIrn-aD~ 556 (1228)
T KOG0055|consen 482 LVGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIV-VAHRLSTIRN-ADK 556 (1228)
T ss_pred cccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEE-Eeeehhhhhc-cCE
Confidence 9999877 499999999999999999999999999999999999999999998864 4677777 4555555555 999
Q ss_pred EEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHH--HhhcCcchhhhhhcccCCCCccCCHHHHHHHHHhCc---
Q 000524 395 IILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL--QEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFH--- 469 (1444)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl--~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 469 (1444)
|++|++|+||+.|+++|++..= | -.++.+ |+....++. ..+ ++. ..++.....+.+.
T Consensus 557 I~v~~~G~IvE~G~h~ELi~~~---G-------~Y~~lv~~Q~~~~~~~~-~~~---~~~----~~~~~~~s~~~s~~~~ 618 (1228)
T KOG0055|consen 557 IAVMEEGKIVEQGTHDELIALG---G-------IYSSLVRLQELEKAAED-EEE---EES----LKEERSRSLKSSSSSP 618 (1228)
T ss_pred EEEEECCEEEEecCHHHHHhcc---c-------hHHHHHHHHhhhhhhhc-ccc---ccc----hhhhhhhccccccccc
Confidence 9999999999999999998620 1 011111 111111110 000 000 0000000000000
Q ss_pred -chhh-hHHhhc--CcccCcccccccccccccCCchHHHHHHHHHHHHHHhhcChhHHHHHHHHHH-------HHHHHHH
Q 000524 470 -VGQK-ISDELR--TPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQIS-------SVALAFM 538 (1444)
Q Consensus 470 -~~~~-~~~~l~--~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~-------~~ali~g 538 (1444)
..+. ...... .+.+.....+ ........+++ |-+.+.+.++.+.+.-.+..+ +.+++++
T Consensus 619 ~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~s~~--------~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s 688 (1228)
T KOG0055|consen 619 SLSRGSNRSNLLSVKPEGEDPEEP--VSEEDEKVSFW--------RIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFS 688 (1228)
T ss_pred cccCCccccccccccccccccccc--cccccccccHH--------HHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 0000 000000 0000000000 00011122333 333444444444443333332 2333333
Q ss_pred HhhhccccCC-CccccchhHHHHHHHHHHHHHH--H--------HHHHHHHHhhcchhHHh--hhcCCccChhhhHHHHH
Q 000524 539 TLFLRTKMHK-HSLTDGGIYAGALFFATAMVMF--N--------GLAEISMTIAKLPVFYK--QRDFRFFPPWAYAIPSW 605 (1444)
Q Consensus 539 tlf~~~~~~~-~~~~~~~~~~g~lf~~~~~~~f--~--------~~~~~~~~~~~~~vf~k--~r~~~~y~~~ay~la~~ 605 (1444)
.++-...... +........+.++|.++....+ + -..+....-.+...|.+ ..+..||.---.. +..
T Consensus 689 ~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l 767 (1228)
T KOG0055|consen 689 QVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GAL 767 (1228)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHH
Confidence 3322111111 1111122234555544433222 1 11111111112222222 1122233111111 111
Q ss_pred HHHhhHHHHHHHHHHhhhhhccccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH------HH
Q 000524 606 ILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLV------LF 679 (1444)
Q Consensus 606 l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~~l~------~~ 679 (1444)
..++- .++.. +--++..-...+...++++.-.+.+|...++=+.++ ++
T Consensus 768 ~~RLa--------------------~Da~~------vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll 821 (1228)
T KOG0055|consen 768 SSRLA--------------------TDASN------VRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLL 821 (1228)
T ss_pred HHHHh--------------------cchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 00000 000111111222233333334444444444433222 22
Q ss_pred HHhccccCccchhhhHHHHHHHc---HHHHHHHHHHHHhhcCCcccccCCCCcccchHHHHhccC-----cc--cchhHH
Q 000524 680 ALGGFVLSREDIKKWWKWAYWCS---PMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLKSRG-----FF--AHAYWY 749 (1444)
Q Consensus 680 l~~Gf~i~~~~ip~~~~w~~~is---p~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~-----~~--~~~~~~ 749 (1444)
.++++.-. +++.-.+ --.|...+.+.+|-....-... .......++..+. .. ......
T Consensus 822 ~~~~~~~~--------~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~----al~~e~~~~~~y~~~l~~p~~~~~~~~~ 889 (1228)
T KOG0055|consen 822 ILSGYLQK--------KFLKGFSKDDKKAYEEASKIAIEAVSNIRTVA----ALCAEEKFMELYKEELEKPRKSSFKRGL 889 (1228)
T ss_pred HHHHHHHH--------HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222110 0000000 0001111111111111000000 0000000110000 00 000112
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhcccCCCccccccccccc----c-cccccccccccccCCCCCCcccCCCCCcc
Q 000524 750 WLGLGALFGFILL---FNLGFTMAITFLNQLEKPRAVITEESESN----K-QDNRIRGTVQLSARGESGEDISGRNSSSK 821 (1444)
Q Consensus 750 w~~~g~l~g~~v~---f~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1444)
|.+++.-+...+. +.+.++.+...... ........... . ............++...+...... .-
T Consensus 890 i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~----g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~---iF 962 (1228)
T KOG0055|consen 890 ISGLGFGFSQSLLFFVYALSFWYGARLISN----GEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGS---IF 962 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhc----CCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHH---HH
Confidence 2222221111111 12222222222211 00000000000 0 000000000000000000000000 00
Q ss_pred hhhhhcccCCCCCccCcccCCCCceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHH
Q 000524 822 SLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTL 901 (1444)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTL 901 (1444)
...+..+..+.....+...|.....++|+||+|+|+..+ ..+||+|+|+++++|+.+||+|||||||||.
T Consensus 963 ~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTv 1032 (1228)
T KOG0055|consen 963 EILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTV 1032 (1228)
T ss_pred HHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCCCHHHH
Confidence 000000100111112223444456799999999998643 4679999999999999999999999999999
Q ss_pred HhhhcCCCCCceEEEEEEEcCccCCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 000524 902 MDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 978 (1444)
Q Consensus 902 l~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l 978 (1444)
+.+|-+..+ +..|.|.|||.+++. ...|+.+|.|.|+|.+|. -|++||+.|+. . +.+.++ +.+++
T Consensus 1033 I~LLeRfYd--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~----~-~vs~~e----Ii~Aa 1100 (1228)
T KOG0055|consen 1033 ISLLERFYD--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS----E-EVSEEE----IIEAA 1100 (1228)
T ss_pred HHHHHHhcC--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC----C-CCCHHH----HHHHH
Confidence 999986544 568999999998766 346789999999999985 79999999981 1 133322 45555
Q ss_pred HHc-------CCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 000524 979 ELV-------ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051 (1444)
Q Consensus 979 ~~l-------~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tv 1051 (1444)
+.. +|.+-.||.||..|. .||||||||++|||||++||+||+|||+||.||+++.+.|+++|.+. ..|||.
T Consensus 1101 k~ANaH~FI~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a-~~gRT~ 1178 (1228)
T KOG0055|consen 1101 KLANAHNFISSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA-MEGRTT 1178 (1228)
T ss_pred HHhhhHHHHhcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh-hcCCcE
Confidence 543 566778999998764 79999999999999999999999999999999999999999999986 469999
Q ss_pred EEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1052 VCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1052 i~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
|+++|++| ..+.+|.|.++++ |++++.|.-
T Consensus 1179 IvIAHRLS--TIqnaD~I~Vi~~-G~VvE~GtH 1208 (1228)
T KOG0055|consen 1179 IVIAHRLS--TIQNADVIAVLKN-GKVVEQGTH 1208 (1228)
T ss_pred EEEecchh--hhhcCCEEEEEEC-CEEEecccH
Confidence 99999986 6788999999985 899999973
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-70 Score=707.11 Aligned_cols=772 Identities=20% Similarity=0.235 Sum_probs=435.6
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHH
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRE 245 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1444)
+.|+|||+.|++|+++||+||.||||||||.+|.|+++.. +|+|.++| .++||||+++ +.+.||||
T Consensus 535 ~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~pW-I~ngTvre 600 (1381)
T KOG0054|consen 535 PTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQPW-IQNGTVRE 600 (1381)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEeccccH-hhCCcHHH
Confidence 3899999999999999999999999999999999999875 99999999 5899999985 55679999
Q ss_pred HHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccccc
Q 000524 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1444)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1444)
||.|+..+. ..||+.+.+.|.+++|.+++|++| .|.||++++ +||
T Consensus 601 NILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD--------------------------------~TeIGErGi-nLS 645 (1381)
T KOG0054|consen 601 NILFGSPYD--EERYDKVIKACALKKDLEILPFGD--------------------------------LTEIGERGI-NLS 645 (1381)
T ss_pred hhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCC--------------------------------cceecCCcc-CCc
Confidence 999998765 479999999999999999999998 499999888 799
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHH-HHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeEE
Q 000524 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1444)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~-~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv 404 (1444)
|||||||++|||++++++|++||+|.|++|+++..+|++ +++.+. .++|+|+. +| .-+....+|.|++|++|+|+
T Consensus 646 GGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L--~~KT~ILV-TH-ql~~L~~ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 646 GGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVILV-TH-QLQFLPHADQIIVLKDGKIV 721 (1381)
T ss_pred HhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEEE-eC-chhhhhhCCEEEEecCCeEe
Confidence 999999999999999999999999999999999999996 786543 34666664 44 45678889999999999999
Q ss_pred EecChhhHHH---HHHhcCCCCCCCCChhHHHHhhcCcchhhhhhcccCCCCccCCHHHHHHHHHhCcchhhhHHhhcCc
Q 000524 405 YQGPRELVLE---FFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTP 481 (1444)
Q Consensus 405 ~~G~~~~~~~---~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (1444)
..|+++|+.+ .|+.+ ...++ ..++.. ...+.+.......+. +. +.........+. ...
T Consensus 722 ~~Gty~el~~~~~~~~~l-~~~~~------------~~~~~~---~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~~ 782 (1381)
T KOG0054|consen 722 ESGTYEELLKSGGDFAEL-AHEEE------------SEQEEE---ASEKDLESGESSRES-ES-RSLESLSSEEEK-SKD 782 (1381)
T ss_pred cccCHHHHHhcchhHHHH-hhccc------------hhhccc---cccccccccccccch-hh-hhhhhhcccccc-ccc
Confidence 9999999984 33332 00000 000000 000000000000000 00 000000000000 000
Q ss_pred ccCcccccccccccccCCchHHHHHHHHHHHHHHhhcChhHHH-HHHHHH-HHHHHHHHHhhhccccCCCc--c---ccc
Q 000524 482 FDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYI-FKLTQI-SSVALAFMTLFLRTKMHKHS--L---TDG 554 (1444)
Q Consensus 482 ~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~-~~~~~~-~~~ali~gtlf~~~~~~~~~--~---~~~ 554 (1444)
....+...........+.-.|...+. +........... +-+... ..+..+.+..|+..+.+... . .+.
T Consensus 783 ~~~~~~~~~~~ee~~~G~v~~~vY~~-----Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~ 857 (1381)
T KOG0054|consen 783 EKEEEDKLVQEEERETGKVSWSVYKK-----YIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVST 857 (1381)
T ss_pred ccchhhHHHHHHHHhcCEeeHHHHHH-----HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCc
Confidence 00000000000000011111111111 111101111111 111111 12223333444443333221 0 122
Q ss_pred hhHHHH----HHHHHHHHHHHHHHHHHHHh-hcchh---------------HHhhhcCCccChhhhHHHHHHHHhhHHHH
Q 000524 555 GIYAGA----LFFATAMVMFNGLAEISMTI-AKLPV---------------FYKQRDFRFFPPWAYAIPSWILKIPISFL 614 (1444)
Q Consensus 555 ~~~~g~----lf~~~~~~~f~~~~~~~~~~-~~~~v---------------f~k~r~~~~y~~~ay~la~~l~~iP~~~~ 614 (1444)
..|.+. .+...+..++.++......+ ..+.+ |......+....++-.+......+|..+.
T Consensus 858 ~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~ 937 (1381)
T KOG0054|consen 858 SFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLE 937 (1381)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHH
Confidence 223221 11111122222211111111 11111 11112222233344556666666666554
Q ss_pred HHHHHHhhhhhccccCCCHh-HHHHHHHHHHHHHH-------HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccc
Q 000524 615 EVAVWVFLTYYVIGCDPNAG-RFFKQYLLFLAVNQ-------MASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVL 686 (1444)
Q Consensus 615 ~~~i~~~i~Y~~~g~~~~~~-~ff~~~l~~~l~~~-------~~~~l~~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i 686 (1444)
..+...+.+-..++...-+. .|+...+.+.+... .++.-.+-+.++++++..+++..++.++..+-..|-
T Consensus 938 ~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~-- 1015 (1381)
T KOG0054|consen 938 FFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGK-- 1015 (1381)
T ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccc--
Confidence 43322211111111111111 11111111111111 122223446677788887777777766654422110
Q ss_pred CccchhhhHHHHHHHcH-HHHHHHHHHHHhhcCCcccccCCCCc-ccchHHHHhccCcccchhHHHHHHHHHHHHHHHHH
Q 000524 687 SREDIKKWWKWAYWCSP-MSYAQNAIVANEFLGYSWKKFTPNSY-ESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFN 764 (1444)
Q Consensus 687 ~~~~ip~~~~w~~~isp-~~y~~~al~~nef~~~~~~~~~~~~~-~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~ 764 (1444)
...-+.... .+++- ...-+-....|++.+.+.+....-.. ......++..-+.. -..++|+.+.+.
T Consensus 1016 ~~rf~~~~~---~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~---------~~g~vGLslsya 1083 (1381)
T KOG0054|consen 1016 EERFIQEND---ELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLI---------SPGLVGLSLSYA 1083 (1381)
T ss_pred cHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC---------CcchHHHHHHHH
Confidence 000000000 00000 00000001111111111110000000 00000000000000 012344444444
Q ss_pred HHHHHHHHHhcccCCCcccccccccccccccccccccccccCCCCCCcccCCCCCcchhhhhcccCCCCC-ccCcccCCC
Q 000524 765 LGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPK-KRGMILPFE 843 (1444)
Q Consensus 765 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 843 (1444)
+..+..+.+.-.. ..+.+....+.++...+.... .+.+...+. +.+..+| .
T Consensus 1084 l~lt~~l~~~vR~----------------------~~elEn~m~SVERv~eY~~~~-----~E~p~~~~~~~pp~~WP-~ 1135 (1381)
T KOG0054|consen 1084 LQLTGLLQWLVRQ----------------------SSELENNMVSVERVLEYTDIP-----SEAPLEIEESRPPPSWP-S 1135 (1381)
T ss_pred HHHHHHHHHHHHH----------------------HHHHHhcchhhhHHHHHhcCC-----CCCCCCCcCCCCCCCCC-C
Confidence 4333333332110 000000111111111000000 000000000 1111222 2
Q ss_pred CceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCc
Q 000524 844 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 923 (1444)
Q Consensus 844 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 923 (1444)
...++|+|++..|.. +-..+|||||+.|+|||++||+|++|||||||+++|.+... +.+|+|.|||.
T Consensus 1136 ~G~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgv 1202 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGV 1202 (1381)
T ss_pred CCeEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCe
Confidence 357999998877642 22469999999999999999999999999999999998765 35899999999
Q ss_pred cCCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccccc------CC
Q 000524 924 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG------LP 994 (1444)
Q Consensus 924 ~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg------~~ 994 (1444)
++.+ ...|++++.+|||+.+|. -|+|.|| |+..+..++.+|++||..+|.+...++.+ .+
T Consensus 1203 dI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NL----------DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e 1271 (1381)
T KOG0054|consen 1203 DISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNL----------DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSE 1271 (1381)
T ss_pred ecccccHHHHHhcCeeeCCCCceec-Ccccccc----------CcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecC
Confidence 9876 356888999999998874 4666665 66667777889999999999887655543 24
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
++.++|.||||.+|+||||+++++||+|||+|+++|++|...|+++||+..+ +||||++.|+.+ ....+|||+||++
T Consensus 1272 gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~--TVmd~DrVlVld~ 1348 (1381)
T KOG0054|consen 1272 GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLN--TVMDSDRVLVLDA 1348 (1381)
T ss_pred CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccc--hhhhcCeEEEeeC
Confidence 5689999999999999999999999999999999999999999999999764 799999999976 4556799999996
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|+++++|.+
T Consensus 1349 -G~v~EfdsP 1357 (1381)
T KOG0054|consen 1349 -GRVVEFDSP 1357 (1381)
T ss_pred -CeEeecCCh
Confidence 899999987
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-68 Score=715.13 Aligned_cols=223 Identities=28% Similarity=0.403 Sum_probs=192.1
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.++|+++.++. +++.+|+|||+.|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 4889999877741 124699999999999999999999999999999999998763 489999999886
Q ss_pred Cc--ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000524 926 KQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 1003 (1444)
Q Consensus 926 ~~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGq 1003 (1444)
.. ...++.+|||+|++.+++.+||+|++.+.+.++. .+.++.++.++++++.++|.+..|+.+ +.|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 43 2245679999999999999999999998777653 233444566889999999999888875 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcC
Q 000524 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083 (1444)
Q Consensus 1004 rkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~ 1083 (1444)
||||+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||+|+|+++ ++..+|||+++|++ |++++.|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999986 78889999999985 89999998
Q ss_pred CCcchhHHHHHH
Q 000524 1084 LGRHSCQLISYF 1095 (1444)
Q Consensus 1084 ~~~~~~~~~~yF 1095 (1444)
. +++..-|
T Consensus 2154 ~----q~Lk~~~ 2161 (2272)
T TIGR01257 2154 I----QHLKSKF 2161 (2272)
T ss_pred H----HHHHHHh
Confidence 6 4555444
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=703.23 Aligned_cols=211 Identities=23% Similarity=0.312 Sum_probs=179.2
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..++|+||+++|+. +...+|+|||++|+|||++||+|+||||||||+++|.|...+ .+|+|.|||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEe
Confidence 46999999999852 123599999999999999999999999999999999997653 48999999998
Q ss_pred CCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000524 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 994 (1444)
Q Consensus 925 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1444)
+.+ ..+|+.++||||++.++. -|++|||.+.. .. .++.++++++..++.+. .|+.+|..
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~-GTIreNLd~~~------~~----tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFS-GTVRFNLDPFN------EH----NDADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCcccc-ccHHHHhCcCC------CC----CHHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 765 356788999999999986 49999996531 11 23447888988888654 35556553
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
..+||||||||++|||||+++|+||+||||||+||+++++.|+++|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1372 -G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1372 -GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA 1447 (1622)
T ss_pred -CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC
Confidence 46899999999999999999999999999999999999999999999985 4899999999985 4667999999996
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|+++..|+.
T Consensus 1448 -G~IvE~Gt~ 1456 (1622)
T PLN03130 1448 -GRVVEFDTP 1456 (1622)
T ss_pred -CEEEEeCCH
Confidence 899999986
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-66 Score=709.64 Aligned_cols=211 Identities=22% Similarity=0.285 Sum_probs=178.9
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..++|+||+++|+. +.+.+|+|+|++|+|||++||+|+||||||||+++|.|..++ .+|+|.|||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEE
Confidence 36999999999842 123599999999999999999999999999999999997663 58999999998
Q ss_pred CCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000524 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 994 (1444)
Q Consensus 925 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 994 (1444)
+.+ ..+|+.++||||++.+++ -|++|||.+.. +. .++.++++++..++.+.. |+.+|..
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~------~~----sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFS------EH----NDADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCC------CC----CHHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 754 456788999999999987 49999996421 11 233478889988886643 5556653
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
..+||||||||++|||||+++|+||+||||||+||+++++.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1369 -G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1369 -GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS 1444 (1495)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 46799999999999999999999999999999999999999999999875 4899999999985 5667999999986
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|+++..|+.
T Consensus 1445 -G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 -GQVLEYDSP 1453 (1495)
T ss_pred -CEEEEECCH
Confidence 899999985
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-65 Score=603.60 Aligned_cols=474 Identities=27% Similarity=0.352 Sum_probs=363.0
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCeecEEEECCccCCCCCc-------cceEEEEcCCC-
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS-LKVSGRVTYNGHDMGEFVP-------ERTAAYISQHD- 235 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~-~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d- 235 (1444)
.++++||||.+.+||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.++||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 56999999999999999999999999999999999999886 4568999999997654432 26799999997
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccc
Q 000524 236 -NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT 314 (1444)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1444)
.+-|.+||.+-+.-..+.++... ..+...++.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~---------------------------------~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGS---------------------------------RAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcccc---------------------------------HHHHHHHHHHHHHHcCCCChhhh
Confidence 46677899888876655443211 11233456788999999987654
Q ss_pred cccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCe
Q 000524 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1444)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1444)
+..++.|||||||||.||+||+.+|++|++|||||+||..++.+|.+.|+++.++ .++.++.++|+..-+.+++|+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e-~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE-LGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH-cCcEEEEEcCCHHHHHHhcCe
Confidence 5688899999999999999999999999999999999999999999999999864 567777799999999999999
Q ss_pred EEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCcchhhhhhcccCCCCccCCHHHHHHHHHhCcchhhh
Q 000524 395 IILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKI 474 (1444)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1444)
|++|++|++|+.|+.+++.+- | ..||... +
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~--------p-------------------------~hpYT~~-----------------L 254 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSN--------P-------------------------QHPYTRG-----------------L 254 (539)
T ss_pred EEEEECCEEEEecCHHHHHhc--------c-------------------------CCcccHH-----------------H
Confidence 999999999999999988541 1 0111000 0
Q ss_pred HHhhcCcccCcccccccccccccCCchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhhccccCCCccccc
Q 000524 475 SDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDG 554 (1444)
Q Consensus 475 ~~~l~~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtlf~~~~~~~~~~~~~ 554 (1444)
... .|. .... .
T Consensus 255 l~a--~p~---------------------------------------------------------------~~~~---~- 265 (539)
T COG1123 255 LAA--VPR---------------------------------------------------------------LGDE---K- 265 (539)
T ss_pred Hhh--CCC---------------------------------------------------------------cccc---c-
Confidence 000 000 0000 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHhhhcCCccChhhhHHHHHHHHhhHHHHHHHHHHhhhhhccccCCCHh
Q 000524 555 GIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAG 634 (1444)
Q Consensus 555 ~~~~g~lf~~~~~~~f~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~ 634 (1444)
T Consensus 266 -------------------------------------------------------------------------------- 265 (539)
T COG1123 266 -------------------------------------------------------------------------------- 265 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccCccchhhhHHHHHHHcHHHHHHHHHHHH
Q 000524 635 RFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVAN 714 (1444)
Q Consensus 635 ~ff~~~l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~n 714 (1444)
T Consensus 266 -------------------------------------------------------------------------------- 265 (539)
T COG1123 266 -------------------------------------------------------------------------------- 265 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCcccccCCCCcccchHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccccccccc
Q 000524 715 EFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQD 794 (1444)
Q Consensus 715 ef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 794 (1444)
.
T Consensus 266 --------~----------------------------------------------------------------------- 266 (539)
T COG1123 266 --------I----------------------------------------------------------------------- 266 (539)
T ss_pred --------c-----------------------------------------------------------------------
Confidence 0
Q ss_pred cccccccccccCCCCCCcccCCCCCcchhhhhcccCCCCCccCcccCCCCceeEEeceeeeeecchhhhhccccCCceEE
Q 000524 795 NRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVL 874 (1444)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i 874 (1444)
.. . . .... .+ ...-++.+|++..+..+.... ....+...+
T Consensus 267 --~~--------------~------~-------~~~~--------~~-~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~A 306 (539)
T COG1123 267 --IR--------------L------P-------RRGP--------LR-AEPLLSVRNLSKRYGSRKGLF--VRERGEVKA 306 (539)
T ss_pred --cc--------------c------c-------cccc--------cc-cCceeEeeeeeeeeccccccc--cccccceee
Confidence 00 0 0 0000 00 011245555554444322111 000134579
Q ss_pred eeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC--Cc---ccccceEEEEecCC--CCCCCC
Q 000524 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK--KQ---ETFARISGYCEQND--IHSPFV 947 (1444)
Q Consensus 875 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~--~~---~~~~~~~gyv~q~~--~~~~~l 947 (1444)
++||||.+++||++||+|.||||||||.++|+|...+ ..|.|.++|.+. +. ...++.+-+++|++ .+.|.+
T Consensus 307 v~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~ 384 (539)
T COG1123 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRM 384 (539)
T ss_pred eeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccc
Confidence 9999999999999999999999999999999998764 489999999762 11 22345556666665 567999
Q ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000524 948 TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1026 (1444)
Q Consensus 948 Tv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPT 1026 (1444)
||++.+.-........ ...+++++|.++++.++|.. ..+.. +..||||||||++|||||+.+|++|++||||
T Consensus 385 tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~ 457 (539)
T COG1123 385 TVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPV 457 (539)
T ss_pred cHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCc
Confidence 9999997665443322 25566778999999999986 44544 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1027 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1027 sgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
|.||+..+..|.+.|+++.++ |.|.|+++|+.+ -+-..||||++|.+ |++|..||.
T Consensus 458 SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 458 SALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred cccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-CeEEEeCCH
Confidence 999999999999999999766 999999999986 47788999999996 899999985
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=685.25 Aligned_cols=217 Identities=18% Similarity=0.291 Sum_probs=180.5
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc------------
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG------------ 912 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~------------ 912 (1444)
..++|+||+|+|+.. ++..+|+|+|++|+||+++||+||||||||||+++|.|...+.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 369999999999632 1236999999999999999999999999999999999976541
Q ss_pred ----------------------------------------eEEEEEEEcCccCCc---ccccceEEEEecCCCCCCCCcH
Q 000524 913 ----------------------------------------YITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTV 949 (1444)
Q Consensus 913 ----------------------------------------~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv 949 (1444)
+.+|+|.+||.++.+ ..+++.+|||+|++.+| ..|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccH
Confidence 148999999998754 45788899999999988 4899
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEE
Q 000524 950 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-------LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022 (1444)
Q Consensus 950 ~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illL 1022 (1444)
+||+.|+. + +.+. +.++++++..++.+ -.||.||.. ...||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~----~-~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK----E-DATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99998862 1 2222 33777888777654 447888854 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhcceEEEEecC---cE-EEEEcCC
Q 000524 1023 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRG---GQ-EIYVGPL 1084 (1444)
Q Consensus 1023 DEPTsgLD~~s~~~i~~~l~~~~-~~g~tvi~t~Hqps~~i~~~fD~v~ll~~g---g~-~~y~G~~ 1084 (1444)
|||||+||+.+++.|++.|+++. .+++|+|+++|+++ ..+.+|+|++|++| |+ ++..|+-
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 99999999999999999999986 35899999999985 57889999999973 66 4578874
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-63 Score=680.74 Aligned_cols=211 Identities=18% Similarity=0.218 Sum_probs=179.1
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..++|+||+++|+.. ...+|+|||++|+|||++||+|+||||||||+++|.|... +.+|+|.|||.+
T Consensus 1283 g~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEE
Confidence 469999999998521 1359999999999999999999999999999999999765 347999999998
Q ss_pred CCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000524 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 994 (1444)
Q Consensus 925 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 994 (1444)
+.+ ..+|+.++||||++.+++. |+||||.... +.+ ++.++++++.+++.+.. |+.+|..
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 765 3567889999999999974 9999995210 122 33478899998887544 5556653
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
..+||||||||++|||||+++|+||+||||||+||++++..|+++|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1419 -G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1419 -GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK 1494 (1522)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 46799999999999999999999999999999999999999999999875 4899999999975 5677999999985
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|+++..|+.
T Consensus 1495 -G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 -GEVAEFGAP 1503 (1522)
T ss_pred -CEEEEECCH
Confidence 899999986
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=624.07 Aligned_cols=487 Identities=22% Similarity=0.262 Sum_probs=352.6
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCC----------CCC------c-cce
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG----------EFV------P-ERT 227 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~----------~~~------~-~~~ 227 (1444)
.++|+|||+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|..+. ... . ++.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999987 899999986441 111 1 246
Q ss_pred EEEEcCCC--CCCCCCCHHHHHHHhhhhc-CCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHH
Q 000524 228 AAYISQHD--NHIGEMTVRETLAFSARCQ-GVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (1444)
Q Consensus 228 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1444)
++||+|++ .+++.+||+||+.++.+.. +.. + .+...+++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS-R---------------------------------EEAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHH
Confidence 99999997 5788899999999976532 110 0 011234677899
Q ss_pred HhCCcc---cccccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEE
Q 000524 305 VLGLEV---CADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL 381 (1444)
Q Consensus 305 ~lgL~~---~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i 381 (1444)
.+||++ ..+. .+..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++.. +++|+.+
T Consensus 152 ~~gL~~~~~~~~~-----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~-g~tvi~i 225 (623)
T PRK10261 152 QVRIPEAQTILSR-----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM-SMGVIFI 225 (623)
T ss_pred HCCCCChhhHHhC-----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 999964 2343 445799999999999999999999999999999999999999999999987533 4456668
Q ss_pred ecCchhHHhhcCeEEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCcchhhhhhcccCCCCccCCHHHH
Q 000524 382 LQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEF 461 (1444)
Q Consensus 382 ~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~ 461 (1444)
+|+..++.+++|+|++|++|++++.|+++++.+ -|.+ ++. ..+
T Consensus 226 tHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~-------------------------~~~----~~l 268 (623)
T PRK10261 226 THDMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQH-------------------------PYT----RAL 268 (623)
T ss_pred cCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCC-------------------------hhh----hhh
Confidence 999999999999999999999999998776521 0000 000 000
Q ss_pred HHHHHhCcchhhhHHhhcCcccCcccccccccccccCCchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhh
Q 000524 462 AEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLF 541 (1444)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtlf 541 (1444)
.+.. +
T Consensus 269 ~~~~---------------~------------------------------------------------------------ 273 (623)
T PRK10261 269 LAAV---------------P------------------------------------------------------------ 273 (623)
T ss_pred hhcc---------------C------------------------------------------------------------
Confidence 0000 0
Q ss_pred hccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHhhhcCCccChhhhHHHHHHHHhhHHHHHHHHHHh
Q 000524 542 LRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVF 621 (1444)
Q Consensus 542 ~~~~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~ 621 (1444)
.... ..
T Consensus 274 ---~~~~--~~--------------------------------------------------------------------- 279 (623)
T PRK10261 274 ---QLGA--MK--------------------------------------------------------------------- 279 (623)
T ss_pred ---cccc--cc---------------------------------------------------------------------
Confidence 0000 00
Q ss_pred hhhhccccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccCccchhhhHHHHHHH
Q 000524 622 LTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWC 701 (1444)
Q Consensus 622 i~Y~~~g~~~~~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~i 701 (1444)
+
T Consensus 280 ------~------------------------------------------------------------------------- 280 (623)
T PRK10261 280 ------G------------------------------------------------------------------------- 280 (623)
T ss_pred ------c-------------------------------------------------------------------------
Confidence 0
Q ss_pred cHHHHHHHHHHHHhhcCCcccccCCCCcccchHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Q 000524 702 SPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPR 781 (1444)
Q Consensus 702 sp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~~~~~~l~~~~~~~~~~ 781 (1444)
... +.. . ....
T Consensus 281 -----------------~~~----~~~-------------~-----------------------------------~~~~ 291 (623)
T PRK10261 281 -----------------LDY----PRR-------------F-----------------------------------PLIS 291 (623)
T ss_pred -----------------ccC----Ccc-------------c-----------------------------------cccc
Confidence 000 000 0 0000
Q ss_pred ccccccccccccccccccccccccCCCCCCcccCCCCCcchhhhhcccCCCCCccCcccCCCCceeEEeceeeeeecchh
Q 000524 782 AVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQE 861 (1444)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 861 (1444)
. .. . .. . ... . ... .. +....-++++|+++.++....
T Consensus 292 ~----~~------~--~~----~------~~~------~-------~~~--~~------~~~~~~L~~~~l~~~y~~~~~ 328 (623)
T PRK10261 292 L----EH------P--AK----Q------EPP------I-------EQD--TV------VDGEPILQVRNLVTRFPLRSG 328 (623)
T ss_pred c----cc------c--cc----c------Ccc------c-------ccc--cc------cCCCceEEEeeeEEEEcCCCc
Confidence 0 00 0 00 0 000 0 000 00 000113788888877642100
Q ss_pred hhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcc------cccceEE
Q 000524 862 MKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE------TFARISG 935 (1444)
Q Consensus 862 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~g 935 (1444)
. . +.....+.+|+||||+|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++... .+++.++
T Consensus 329 ~-~-~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~i~ 404 (623)
T PRK10261 329 L-L-NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRIDTLSPGKLQALRRDIQ 404 (623)
T ss_pred c-c-cccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEECCcCCHHHHHHhcCCeE
Confidence 0 0 0000124699999999999999999999999999999999998653 479999999875321 2356799
Q ss_pred EEecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHH
Q 000524 936 YCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVE 1012 (1444)
Q Consensus 936 yv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGqrkRl~ia~~ 1012 (1444)
|++|++ .+++.+||.|++.+....+. ....+..++.+.++++.+||. +..++. +..|||||||||+||++
T Consensus 405 ~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~~~LSgGqrQRv~iAra 477 (623)
T PRK10261 405 FIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----PHEFSGGQRQRICIARA 477 (623)
T ss_pred EEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHH
Confidence 999997 47889999999987644321 112334456789999999996 456665 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1013 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1013 L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
|+.+|++|||||||+|||..++..+++.|++++++ |.|||+++|+++ .+.+.||++++|++ |++++.|+.
T Consensus 478 L~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~ 548 (623)
T PRK10261 478 LALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPR 548 (623)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999765 899999999986 57789999999986 799999986
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-63 Score=618.12 Aligned_cols=460 Identities=20% Similarity=0.288 Sum_probs=348.2
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1444)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ ..+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 35999999999999999999999999999999999999861 128999999998865432 3569999999989999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
+||+||+.++......+. .+ . .+...+++++++.+||++..+..+
T Consensus 97 ~tv~e~l~~~~~~~~~~~-~~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (506)
T PRK13549 97 LSVLENIFLGNEITPGGI-MD------Y------------------------DAMYLRAQKLLAQLKLDINPATPV---- 141 (506)
T ss_pred CcHHHHhhhcccccccCC-cC------H------------------------HHHHHHHHHHHHHcCCCCCcccch----
Confidence 999999998653210000 00 0 001224577899999987777655
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
+.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ . +++|+.++|+..++.+++|+|++|++
T Consensus 142 -~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvi~~tH~~~~~~~~~d~v~~l~~ 218 (506)
T PRK13549 142 -GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-H-GIACIYISHKLNEVKAISDTICVIRD 218 (506)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHHhcCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999864 3 44566678888899999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCcchhhhhhcccCCCCccCCHHHHHHHHHhCcchhhhHHhhcC
Q 000524 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1444)
Q Consensus 401 G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (1444)
|++++.|+.+++.. .+..+.
T Consensus 219 G~i~~~~~~~~~~~--------------------------------------------~~~~~~---------------- 238 (506)
T PRK13549 219 GRHIGTRPAAGMTE--------------------------------------------DDIITM---------------- 238 (506)
T ss_pred CEEeeecccccCCH--------------------------------------------HHHHHH----------------
Confidence 99998886432200 000000
Q ss_pred cccCcccccccccccccCCchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhhccccCCCccccchhHHHH
Q 000524 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGA 560 (1444)
Q Consensus 481 ~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~ 560 (1444)
+. . .. .
T Consensus 239 ------------------------------------------------------------~~--~--~~-~--------- 244 (506)
T PRK13549 239 ------------------------------------------------------------MV--G--RE-L--------- 244 (506)
T ss_pred ------------------------------------------------------------hh--C--cC-c---------
Confidence 00 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHhhhcCCccChhhhHHHHHHHHhhHHHHHHHHHHhhhhhccccCCCHhHHHHHH
Q 000524 561 LFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQY 640 (1444)
Q Consensus 561 lf~~~~~~~f~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ 640 (1444)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccCccchhhhHHHHHHHcHHHHHHHHHHHHhhcCCc
Q 000524 641 LLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYS 720 (1444)
Q Consensus 641 l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~ 720 (1444)
+
T Consensus 245 ---------------------------------------------------~---------------------------- 245 (506)
T PRK13549 245 ---------------------------------------------------T---------------------------- 245 (506)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred ccccCCCCcccchHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccccccccccccccc
Q 000524 721 WKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGT 800 (1444)
Q Consensus 721 ~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1444)
. .. + . ..
T Consensus 246 --~-------------------------------------------------~~-~--~------------------~~- 252 (506)
T PRK13549 246 --A-------------------------------------------------LY-P--R------------------EP- 252 (506)
T ss_pred --c-------------------------------------------------cc-c--c------------------cc-
Confidence 0 00 0 0 00
Q ss_pred cccccCCCCCCcccCCCCCcchhhhhcccCCCCCccCcccCCCCceeEEeceeeeeecchhhhhccccCCceEEeeccEE
Q 000524 801 VQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSG 880 (1444)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~ 880 (1444)
. .. ...-+.++|+++.++.. +++.+|+|||+
T Consensus 253 -------------------~------------~~--------~~~~l~~~~l~~~~~~~----------~~~~vl~~vsl 283 (506)
T PRK13549 253 -------------------H------------TI--------GEVILEVRNLTAWDPVN----------PHIKRVDDVSF 283 (506)
T ss_pred -------------------c------------CC--------CCceEEEecCccccccc----------cccccccceee
Confidence 0 00 00125566666544210 12358999999
Q ss_pred EEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEEecCC---CCCCCCcHHHHH
Q 000524 881 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPFVTVYESL 953 (1444)
Q Consensus 881 ~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~~~~lTv~e~l 953 (1444)
+|++||++||+|+||||||||+++|+|...+ +.+|+|.++|.++... ..++.++|++|+. .+++.+||.|++
T Consensus 284 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 362 (506)
T PRK13549 284 SLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNI 362 (506)
T ss_pred EEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHh
Confidence 9999999999999999999999999997541 1379999999875421 1245689999985 467889999999
Q ss_pred HHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000524 954 LYSAWLRLP--PEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030 (1444)
Q Consensus 954 ~f~a~lr~~--~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD 1030 (1444)
.+....... ...+.+...+.++++++.+++. +..+..+ ..||||||||++||++|+.+|++|+|||||+|||
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD 437 (506)
T PRK13549 363 TLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437 (506)
T ss_pred hhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence 875321111 0112233445688999999996 4666654 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCCCc
Q 000524 1031 ARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGR 1086 (1444)
Q Consensus 1031 ~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~~~ 1086 (1444)
+.+...+++.|++++++|+|||+++|++. ++.+.||++++|++ |+++..|+..+
T Consensus 438 ~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 491 (506)
T PRK13549 438 VGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHN 491 (506)
T ss_pred HhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEecccc
Confidence 99999999999999888999999999986 68889999999986 79999887754
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=614.69 Aligned_cols=450 Identities=21% Similarity=0.318 Sum_probs=345.2
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 45999999999999999999999999999999999999987 9999999988754322 3569999999989999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
+||+||+.++.......... + ..+.+.+++++++.+||++..|..++
T Consensus 94 ~tv~e~l~~~~~~~~~~~~~-------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~--- 140 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGRI-------------------D-----------WKKMYAEADKLLARLNLRFSSDKLVG--- 140 (501)
T ss_pred CcHHHHhhhccccccccCcc-------------------C-----------HHHHHHHHHHHHHHcCCCCCccCchh---
Confidence 99999999864321000000 0 00012245678999999887776554
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ . +++|+.++|+.+++.+++|+|++|++
T Consensus 141 --~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvii~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 141 --ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-Q-GRGIVYISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 6999999999999999999999999999999999999999999999864 3 44566688888999999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCcchhhhhhcccCCCCccCCHHHHHHHHHhCcchhhhHHhhcC
Q 000524 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1444)
Q Consensus 401 G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (1444)
|+++..|+.+++.. ++..+.+
T Consensus 217 G~i~~~~~~~~~~~--------------------------------------------~~~~~~~--------------- 237 (501)
T PRK10762 217 GQFIAEREVADLTE--------------------------------------------DSLIEMM--------------- 237 (501)
T ss_pred CEEEEecCcCcCCH--------------------------------------------HHHHHHh---------------
Confidence 99998875432100 0000000
Q ss_pred cccCcccccccccccccCCchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhhccccCCCccccchhHHHH
Q 000524 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGA 560 (1444)
Q Consensus 481 ~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~ 560 (1444)
+ . .. .
T Consensus 238 -------------------------------------------------------------~--~--~~-~--------- 242 (501)
T PRK10762 238 -------------------------------------------------------------V--G--RK-L--------- 242 (501)
T ss_pred -------------------------------------------------------------c--C--CC-c---------
Confidence 0 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHhhhcCCccChhhhHHHHHHHHhhHHHHHHHHHHhhhhhccccCCCHhHHHHHH
Q 000524 561 LFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQY 640 (1444)
Q Consensus 561 lf~~~~~~~f~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ 640 (1444)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK10762 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccCccchhhhHHHHHHHcHHHHHHHHHHHHhhcCCc
Q 000524 641 LLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYS 720 (1444)
Q Consensus 641 l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~ 720 (1444)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK10762 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCcccchHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccccccccccccccc
Q 000524 721 WKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGT 800 (1444)
Q Consensus 721 ~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1444)
... ..
T Consensus 243 ---------------------------------------------------------~~~-----------------~~- 247 (501)
T PRK10762 243 ---------------------------------------------------------EDQ-----------------YP- 247 (501)
T ss_pred ---------------------------------------------------------ccc-----------------cc-
Confidence 000 00
Q ss_pred cccccCCCCCCcccCCCCCcchhhhhcccCCCCCccCcccCCCCceeEEeceeeeeecchhhhhccccCCceEEeeccEE
Q 000524 801 VQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSG 880 (1444)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~ 880 (1444)
. . . . +..+..+.++|++. .+|+|+|+
T Consensus 248 ------------~------~-------~-~----------~~~~~~l~~~~l~~------------------~~l~~vsl 273 (501)
T PRK10762 248 ------------R------L-------D-K----------APGEVRLKVDNLSG------------------PGVNDVSF 273 (501)
T ss_pred ------------c------c-------c-c----------CCCCcEEEEeCccc------------------CCcccceE
Confidence 0 0 0 0 00001245565541 26999999
Q ss_pred EEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEEecCC---CCCCCCcHHHHH
Q 000524 881 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPFVTVYESL 953 (1444)
Q Consensus 881 ~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~~~~lTv~e~l 953 (1444)
++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++... ..++.+||++|++ .+++.+||.|++
T Consensus 274 ~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 351 (501)
T PRK10762 274 TLRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENM 351 (501)
T ss_pred EEcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHh
Confidence 9999999999999999999999999998653 479999999875421 2345689999995 467889999999
Q ss_pred HHHHHhcCC---CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000524 954 LYSAWLRLP---PEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1444)
Q Consensus 954 ~f~a~lr~~---~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgL 1029 (1444)
.+....... .....+..++.++++++.++|. +..++.+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L 426 (501)
T PRK10762 352 SLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426 (501)
T ss_pred hhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence 875321110 0112233345688999999995 5666654 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCCCc
Q 000524 1030 DARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGR 1086 (1444)
Q Consensus 1030 D~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~~~ 1086 (1444)
|+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++ |++++.|+..+
T Consensus 427 D~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 427 DVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred CHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 999999999999999878999999999986 68889999999985 79999988753
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=616.63 Aligned_cols=458 Identities=21% Similarity=0.288 Sum_probs=346.6
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 35999999999999999999999999999999999999987 9999999998865432 2469999999989999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
+||+||+.++..... ..+.. +..+ ..+...+++.+++.+||++..++.++
T Consensus 95 ~tv~e~l~~~~~~~~--~~~~~--------------~~~~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~--- 144 (510)
T PRK09700 95 LTVLENLYIGRHLTK--KVCGV--------------NIID-----------WREMRVRAAMMLLRVGLKVDLDEKVA--- 144 (510)
T ss_pred CcHHHHhhhcccccc--ccccc--------------cccC-----------HHHHHHHHHHHHHHcCCCCCcccchh---
Confidence 999999987532100 00000 0000 00112346778999999877776654
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+ ++|+.++|+..++.+++|+|++|++
T Consensus 145 --~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g-~tiiivsHd~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 145 --NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EG-TAIVYISHKLAEIRRICDRYTVMKD 220 (510)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999865 34 4556688889999999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCcchhhhhhcccCCCCccCCHHHHHHHHHhCcchhhhHHhhcC
Q 000524 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1444)
Q Consensus 401 G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (1444)
|++++.|+.+++.. ++..+..
T Consensus 221 G~i~~~g~~~~~~~--------------------------------------------~~~~~~~--------------- 241 (510)
T PRK09700 221 GSSVCSGMVSDVSN--------------------------------------------DDIVRLM--------------- 241 (510)
T ss_pred CEEeeecchhhCCH--------------------------------------------HHHHHHh---------------
Confidence 99999887653210 0000000
Q ss_pred cccCcccccccccccccCCchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhhccccCCCccccchhHHHH
Q 000524 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGA 560 (1444)
Q Consensus 481 ~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~ 560 (1444)
. + .. ..
T Consensus 242 -------------------------------------------------------------~--~--~~-~~-------- 247 (510)
T PRK09700 242 -------------------------------------------------------------V--G--RE-LQ-------- 247 (510)
T ss_pred -------------------------------------------------------------c--C--CC-cc--------
Confidence 0 0 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHhhhcCCccChhhhHHHHHHHHhhHHHHHHHHHHhhhhhccccCCCHhHHHHHH
Q 000524 561 LFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQY 640 (1444)
Q Consensus 561 lf~~~~~~~f~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ 640 (1444)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccCccchhhhHHHHHHHcHHHHHHHHHHHHhhcCCc
Q 000524 641 LLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYS 720 (1444)
Q Consensus 641 l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~ 720 (1444)
+ .+
T Consensus 248 ----------------------------------------------~---------------------------~~---- 250 (510)
T PRK09700 248 ----------------------------------------------N---------------------------RF---- 250 (510)
T ss_pred ----------------------------------------------c---------------------------cc----
Confidence 0 00
Q ss_pred ccccCCCCcccchHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccccccccccccccc
Q 000524 721 WKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGT 800 (1444)
Q Consensus 721 ~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1444)
.. . ..
T Consensus 251 -~~-----------------------------------------------------~--------------------~~- 255 (510)
T PRK09700 251 -NA-----------------------------------------------------M--------------------KE- 255 (510)
T ss_pred -cc-----------------------------------------------------c--------------------cc-
Confidence 00 0 00
Q ss_pred cccccCCCCCCcccCCCCCcchhhhhcccCCCCCccCcccCCCCceeEEeceeeeeecchhhhhccccCCceEEeeccEE
Q 000524 801 VQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSG 880 (1444)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~ 880 (1444)
. . .. .. .+.-+.++|++..+ + .+|+|+|+
T Consensus 256 ------------~------~---------~~-~~--------~~~~l~~~~l~~~~-------------~--~~l~~isl 284 (510)
T PRK09700 256 ------------N------V---------SN-LA--------HETVFEVRNVTSRD-------------R--KKVRDISF 284 (510)
T ss_pred ------------c------c---------cc-CC--------CCcEEEEeCccccC-------------C--CcccceeE
Confidence 0 0 00 00 00125667766431 1 27999999
Q ss_pred EEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEEecC---CCCCCCCcHHHHH
Q 000524 881 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQN---DIHSPFVTVYESL 953 (1444)
Q Consensus 881 ~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~---~~~~~~lTv~e~l 953 (1444)
++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++... ..++.+||++|+ ..+++.+||+|++
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 362 (510)
T PRK09700 285 SVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNM 362 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHh
Confidence 9999999999999999999999999997653 479999999875321 234568999998 4577889999999
Q ss_pred HHHHHhc---CCC--C-CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000524 954 LYSAWLR---LPP--E-VDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1026 (1444)
Q Consensus 954 ~f~a~lr---~~~--~-~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPT 1026 (1444)
.+....+ ... . ......++.++++++.++|. +..++.+ ..|||||||||.||++|+.+|+||+|||||
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt 437 (510)
T PRK09700 363 AISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPT 437 (510)
T ss_pred ccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 8653211 000 0 11222334578999999996 6667664 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1027 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1027 sgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
+|||+.+...+++.|++++++|.|||+++|++. ++.+.||++++|++ |+++..++.
T Consensus 438 ~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 438 RGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 999999999999999999878999999999986 68889999999986 788888865
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-62 Score=612.29 Aligned_cols=464 Identities=22% Similarity=0.285 Sum_probs=345.4
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCeecEEEECCccCCCCCc-------cceEEEEcCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEFVP-------ERTAAYISQHD 235 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d 235 (1444)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|. ...+|+|.++|+++..... ++.++||+|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 46999999999999999999999999999999999999861 1138999999998765321 24699999986
Q ss_pred C--CCCCCCHHHHHHHhhhhc-CCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcc--
Q 000524 236 N--HIGEMTVRETLAFSARCQ-GVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV-- 310 (1444)
Q Consensus 236 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-- 310 (1444)
. +++.+||+|++.+..... +.. + .+...+++++++.+||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------R------------------------EAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHCCCCChH
Confidence 4 567789999988653211 100 0 011234677899999975
Q ss_pred -cccccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHH
Q 000524 311 -CADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETY 389 (1444)
Q Consensus 311 -~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~ 389 (1444)
..+.. +..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+ .+||.++|+..++.
T Consensus 148 ~~~~~~-----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvi~vtHd~~~~~ 221 (529)
T PRK15134 148 KRLTDY-----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELN-MGLLFITHNLSIVR 221 (529)
T ss_pred HHHhhC-----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcC-CeEEEEcCcHHHHH
Confidence 23544 457999999999999999999999999999999999999999999999865334 45556788888999
Q ss_pred hhcCeEEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCcchhhhhhcccCCCCccCCHHHHHHHHHhCc
Q 000524 390 DLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFH 469 (1444)
Q Consensus 390 ~~fD~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1444)
+++|+|++|++|++++.|+.+++.+. |. .+ ..
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~-------------------------~~--------~~------- 253 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PT-------------------------HP--------YT------- 253 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CC-------------------------CH--------HH-------
Confidence 99999999999999999977654210 00 00 00
Q ss_pred chhhhHHhhcCcccCcccccccccccccCCchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 000524 470 VGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKH 549 (1444)
Q Consensus 470 ~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtlf~~~~~~~~ 549 (1444)
+.+ +...
T Consensus 254 -----------------------------------------~~~----------------------------~~~~---- 260 (529)
T PRK15134 254 -----------------------------------------QKL----------------------------LNSE---- 260 (529)
T ss_pred -----------------------------------------HHH----------------------------HHhC----
Confidence 000 0000
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHhhhcCCccChhhhHHHHHHHHhhHHHHHHHHHHhhhhhcccc
Q 000524 550 SLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGC 629 (1444)
Q Consensus 550 ~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~ 629 (1444)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccCccchhhhHHHHHHHcHHHHHHH
Q 000524 630 DPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQN 709 (1444)
Q Consensus 630 ~~~~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~ 709 (1444)
+
T Consensus 261 --------------------------------------------------------------~----------------- 261 (529)
T PRK15134 261 --------------------------------------------------------------P----------------- 261 (529)
T ss_pred --------------------------------------------------------------c-----------------
Confidence 0
Q ss_pred HHHHHhhcCCcccccCCCCcccchHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccccc
Q 000524 710 AIVANEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESE 789 (1444)
Q Consensus 710 al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 789 (1444)
. .
T Consensus 262 -----------------~--------------------------------------------------~----------- 263 (529)
T PRK15134 262 -----------------S--------------------------------------------------G----------- 263 (529)
T ss_pred -----------------c--------------------------------------------------c-----------
Confidence 0 0
Q ss_pred ccccccccccccccccCCCCCCcccCCCCCcchhhhhcccCCCCCccCcccCCCCceeEEeceeeeeecchhhhhccccC
Q 000524 790 SNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLE 869 (1444)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 869 (1444)
.. .. . . .. .+.-++++|+++.++...+. . +...
T Consensus 264 --------~~-------------~~-----~-------~----~~--------~~~~l~~~~l~~~~~~~~~~-~-~~~~ 296 (529)
T PRK15134 264 --------DP-------------VP-----L-------P----EP--------ASPLLDVEQLQVAFPIRKGI-L-KRTV 296 (529)
T ss_pred --------cc-------------cc-----c-------C----CC--------CCCcccccCcEEEeecCccc-c-cccc
Confidence 00 00 0 0 00 00014556666555311000 0 0000
Q ss_pred CceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcc------cccceEEEEecCC--
Q 000524 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE------TFARISGYCEQND-- 941 (1444)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~q~~-- 941 (1444)
+.+.+|+|||+++++||++||+||||||||||+++|+|... .+|+|.++|.++... .+++.+||++|+.
T Consensus 297 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 373 (529)
T PRK15134 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNS 373 (529)
T ss_pred ccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchh
Confidence 12469999999999999999999999999999999999763 479999999875321 1245689999996
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEE
Q 000524 942 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1020 (1444)
Q Consensus 942 ~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il 1020 (1444)
.+++.+||.|++.+....+.. .......++.++++++.++|. +..+.. +..|||||||||+||++|+.+|++|
T Consensus 374 ~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~ll 447 (529)
T PRK15134 374 SLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIARALILKPSLI 447 (529)
T ss_pred hcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHHHHhCCCCEE
Confidence 467889999999886543211 122334455688999999997 456655 3579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1021 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1021 lLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.||++++|++ |+++..|+.
T Consensus 448 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 448 ILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred EeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999865 899999999986 57788999999986 799998875
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-61 Score=658.91 Aligned_cols=211 Identities=24% Similarity=0.271 Sum_probs=179.5
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..+.|+||+++|+. +...+|+||||+|+|||++||+|+||||||||+++|.|... +.+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 46999999999852 12359999999999999999999999999999999999866 347999999998
Q ss_pred CCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000524 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 994 (1444)
Q Consensus 925 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1444)
+.+ ..+++.++||||++.++. -|++|||... .+. .++.++++++.+++.+. .|+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~-gTIreNIdp~------~~~----sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFD-GTVRQNVDPF------LEA----SSAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCcccc-ccHHHHhCcc------cCC----CHHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 764 457889999999999986 4999999421 112 23458899999998765 36667653
Q ss_pred CCCcCCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000524 995 GVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1073 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~-p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~ 1073 (1444)
..+||||||||++|||||+++ |+||+||||||+||+++.+.|+++|++.. +++|||+++|+++ ....||+|++|+
T Consensus 1443 -G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 -GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD 1518 (1560)
T ss_pred -cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE
Confidence 468999999999999999995 89999999999999999999999999874 4799999999974 678899999998
Q ss_pred cCcEEEEEcCC
Q 000524 1074 RGGQEIYVGPL 1084 (1444)
Q Consensus 1074 ~gg~~~y~G~~ 1084 (1444)
+ |+++..|+.
T Consensus 1519 ~-G~VvE~Gt~ 1528 (1560)
T PTZ00243 1519 H-GAVAEMGSP 1528 (1560)
T ss_pred C-CEEEEECCH
Confidence 5 899999985
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=608.40 Aligned_cols=445 Identities=23% Similarity=0.321 Sum_probs=341.3
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCeecEEEECC-----------------------ccC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL--DSSLKVSGRVTYNG-----------------------HDM 219 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l--~~~~~~~G~I~~~G-----------------------~~~ 219 (1444)
+.+|+|+|+.+.+|++++|+|||||||||||++|+|.+ +|+ +|+|.++| .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999997 576 89999972 221
Q ss_pred C-------CC------CccceEEEEcCC-CCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHH
Q 000524 220 G-------EF------VPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285 (1444)
Q Consensus 220 ~-------~~------~~~~~~~yv~Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~ 285 (1444)
. .. ..++.++||+|+ +.+++.+||+||+.|+....+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~--------------------------- 142 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEG--------------------------- 142 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCH---------------------------
Confidence 1 00 013568999997 678888999999998654322100
Q ss_pred HHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHH
Q 000524 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC 365 (1444)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~ 365 (1444)
.+...+++++++.+||++..+..+ ..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.
T Consensus 143 -------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 143 -------KEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred -------HHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 011234677899999987666544 46999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCcchhhhh
Q 000524 366 LKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQY 445 (1444)
Q Consensus 366 L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~ 445 (1444)
|+++++.. +++|+.++|+...+.+++|+|++|++|++++.|+++++.+.+..
T Consensus 211 l~~l~~~~-g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~--------------------------- 262 (520)
T TIGR03269 211 LEEAVKAS-GISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME--------------------------- 262 (520)
T ss_pred HHHHHHhc-CcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHHh---------------------------
Confidence 99986543 44566688888889999999999999999988865533110000
Q ss_pred hcccCCCCccCCHHHHHHHHHhCcchhhhHHhhcCcccCcccccccccccccCCchHHHHHHHHHHHHHHhhcChhHHHH
Q 000524 446 WTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIF 525 (1444)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~~ 525 (1444)
T Consensus 263 -------------------------------------------------------------------------------- 262 (520)
T TIGR03269 263 -------------------------------------------------------------------------------- 262 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHhhhcCCccChhhhHHHHH
Q 000524 526 KLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSW 605 (1444)
Q Consensus 526 ~~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~ 605 (1444)
...
T Consensus 263 -------------------~~~---------------------------------------------------------- 265 (520)
T TIGR03269 263 -------------------GVS---------------------------------------------------------- 265 (520)
T ss_pred -------------------hch----------------------------------------------------------
Confidence 000
Q ss_pred HHHhhHHHHHHHHHHhhhhhccccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc
Q 000524 606 ILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFV 685 (1444)
Q Consensus 606 l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~ 685 (1444)
T Consensus 266 -------------------------------------------------------------------------------- 265 (520)
T TIGR03269 266 -------------------------------------------------------------------------------- 265 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccchhhhHHHHHHHcHHHHHHHHHHHHhhcCCcccccCCCCcccchHHHHhccCcccchhHHHHHHHHHHHHHHHHHH
Q 000524 686 LSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNL 765 (1444)
Q Consensus 686 i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~ 765 (1444)
.+
T Consensus 266 ----~~-------------------------------------------------------------------------- 267 (520)
T TIGR03269 266 ----EV-------------------------------------------------------------------------- 267 (520)
T ss_pred ----hh--------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHhcccCCCcccccccccccccccccccccccccCCCCCCcccCCCCCcchhhhhcccCCCCCccCcccCCCCc
Q 000524 766 GFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPH 845 (1444)
Q Consensus 766 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (1444)
.+. .. . +. ...
T Consensus 268 ------------~~~-----------------~~-------------~-------------------~~--------~~~ 278 (520)
T TIGR03269 268 ------------EKE-----------------CE-------------V-------------------EV--------GEP 278 (520)
T ss_pred ------------ccc-----------------cc-------------c-------------------CC--------CCc
Confidence 000 00 0 00 001
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEc-Ccc
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITIS-GYP 924 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~-g~~ 924 (1444)
-++++|+++.++... .+.+.+|+|+||.|++||++||+||||||||||+++|+|...+ .+|+|.++ |.+
T Consensus 279 ~l~~~~l~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~ 348 (520)
T TIGR03269 279 IIKVRNVSKRYISVD--------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDE 348 (520)
T ss_pred eEEEeccEEEeccCC--------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCc
Confidence 256777777663100 0124699999999999999999999999999999999998653 47999996 532
Q ss_pred ---CCc------ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-----ccccc
Q 000524 925 ---KKQ------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-----LIQSL 990 (1444)
Q Consensus 925 ---~~~------~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-----~~~~~ 990 (1444)
... ...++.+||++|++.+++.+||.|++.+...+. ...+..++.+.++++.++|.+ ..++.
T Consensus 349 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 424 (520)
T TIGR03269 349 WVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY 424 (520)
T ss_pred cccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC
Confidence 111 122456899999988889999999998754321 122333456889999999975 34554
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceE
Q 000524 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDEL 1069 (1444)
Q Consensus 991 vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v 1069 (1444)
+..|||||||||+||++|+.+|+||+|||||+|||+.+...+++.|++++++ |.|||+++|++. .+.+.||++
T Consensus 425 -----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i 498 (520)
T TIGR03269 425 -----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRA 498 (520)
T ss_pred -----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEE
Confidence 4579999999999999999999999999999999999999999999999765 899999999986 578889999
Q ss_pred EEEecCcEEEEEcCC
Q 000524 1070 FLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1070 ~ll~~gg~~~y~G~~ 1084 (1444)
++|++ |+++..|+.
T Consensus 499 ~~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 499 ALMRD-GKIVKIGDP 512 (520)
T ss_pred EEEEC-CEEEEECCH
Confidence 99985 789888875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-62 Score=607.59 Aligned_cols=453 Identities=20% Similarity=0.271 Sum_probs=342.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1444)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 35999999999999999999999999999999999999987 9999999998765432 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
+||+||+.|+.... + +.+..++++++.+||++..+..++
T Consensus 101 ~tv~e~l~~~~~~~------~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (510)
T PRK15439 101 LSVKENILFGLPKR------Q--------------------------------ASMQKMKQLLAALGCQLDLDSSAG--- 139 (510)
T ss_pred CcHHHHhhcccccc------h--------------------------------HHHHHHHHHHHHcCCCccccCChh---
Confidence 99999998853200 0 011235678899999877776554
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ . +++|+.++|+..++.++||+|++|++
T Consensus 140 --~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiivtHd~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 140 --SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-Q-GVGIVFISHKLPEIRQLADRISVMRD 215 (510)
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999864 3 44566688888999999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCcchhhhhhcccCCCCccCCHHHHHHHHHhCcchhhhHHhhcC
Q 000524 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1444)
Q Consensus 401 G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (1444)
|++++.|+.+++... +..+.+.. .
T Consensus 216 G~i~~~g~~~~~~~~--------------------------------------------~~~~~~~~------------~ 239 (510)
T PRK15439 216 GTIALSGKTADLSTD--------------------------------------------DIIQAITP------------A 239 (510)
T ss_pred CEEEEecChHHcCHH--------------------------------------------HHHHHHhC------------c
Confidence 999999987653210 00000000 0
Q ss_pred cccCcccccccccccccCCchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhhccccCCCccccchhHHHH
Q 000524 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGA 560 (1444)
Q Consensus 481 ~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~ 560 (1444)
..... ...
T Consensus 240 ----------------------------------------------------------------~~~~~-~~~------- 247 (510)
T PRK15439 240 ----------------------------------------------------------------AREKS-LSA------- 247 (510)
T ss_pred ----------------------------------------------------------------ccccc-ccc-------
Confidence 00000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHhhhcCCccChhhhHHHHHHHHhhHHHHHHHHHHhhhhhccccCCCHhHHHHHH
Q 000524 561 LFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQY 640 (1444)
Q Consensus 561 lf~~~~~~~f~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ 640 (1444)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK15439 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccCccchhhhHHHHHHHcHHHHHHHHHHHHhhcCCc
Q 000524 641 LLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYS 720 (1444)
Q Consensus 641 l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~ 720 (1444)
...
T Consensus 248 --------------------------------------------------~~~--------------------------- 250 (510)
T PRK15439 248 --------------------------------------------------SQK--------------------------- 250 (510)
T ss_pred --------------------------------------------------ccc---------------------------
Confidence 000
Q ss_pred ccccCCCCcccchHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccccccccccccccc
Q 000524 721 WKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGT 800 (1444)
Q Consensus 721 ~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1444)
. ...+ + .
T Consensus 251 ~-----------------~~~~---------------------------------~----------------------~- 257 (510)
T PRK15439 251 L-----------------WLEL---------------------------------P----------------------G- 257 (510)
T ss_pred c-----------------cccc---------------------------------c----------------------c-
Confidence 0 0000 0 0
Q ss_pred cccccCCCCCCcccCCCCCcchhhhhcccCCCCCccCcccCCCCceeEEeceeeeeecchhhhhccccCCceEEeeccEE
Q 000524 801 VQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSG 880 (1444)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~ 880 (1444)
. .... .. .+.-+..+|++. .+|+|||+
T Consensus 258 ------------~--------------~~~~-~~--------~~~~l~~~~l~~------------------~~l~~isl 284 (510)
T PRK15439 258 ------------N--------------RRQQ-AA--------GAPVLTVEDLTG------------------EGFRNISL 284 (510)
T ss_pred ------------c--------------cccc-CC--------CCceEEEeCCCC------------------CCccceeE
Confidence 0 0000 00 001255666541 15899999
Q ss_pred EEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEEecCC---CCCCCCcHHHHH
Q 000524 881 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPFVTVYESL 953 (1444)
Q Consensus 881 ~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~~~~lTv~e~l 953 (1444)
++++||++||+||||||||||+++|+|...+ .+|+|.++|.++... ..++.++|++|+. .+++.+|+.|++
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l 362 (510)
T PRK15439 285 EVRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNV 362 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHH
Confidence 9999999999999999999999999997653 479999999875431 1234689999984 467889999998
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000524 954 LYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032 (1444)
Q Consensus 954 ~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~ 1032 (1444)
......+..........++.++++++.++|. +..++.+ +.||||||||++||++|+.+|+||||||||+|||+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 363 CALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 6421111110011122334688999999997 6667664 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCCC
Q 000524 1033 AAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1085 (1444)
Q Consensus 1033 s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~~ 1085 (1444)
+...+.+.|++++++|.|||+++|++. ++.+.||++++|++ |++++.|..+
T Consensus 438 ~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~ 488 (510)
T PRK15439 438 ARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGA 488 (510)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 999999999999888999999999996 68889999999985 7999888654
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-60 Score=652.33 Aligned_cols=210 Identities=20% Similarity=0.256 Sum_probs=179.0
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..++|+||+++|+. +.+.+|+|||++|+|||++||+|+||||||||+++|+|... .+|+|.|||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 46999999999852 12469999999999999999999999999999999999764 47999999998
Q ss_pred CCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000524 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 994 (1444)
Q Consensus 925 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1444)
+.+ ..+++.++||||++.+++ -|+||||.... +..++.++++++.++|.+. .|+.+|.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~-GTIR~NLdp~~----------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e- 1349 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFS-GTFRKNLDPYE----------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD- 1349 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCc-cCHHHHhCccc----------CCCHHHHHHHHHHCCCHHHHHhCcccccccccc-
Confidence 764 346788999999999997 59999994311 1124458899999998654 3556664
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
+..+||||||||++|||||+++|+||+||||||+||..++..|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1350 ~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 346899999999999999999999999999999999999999999999875 4799999999974 5677999999986
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|+++.+|+.
T Consensus 1427 -G~ivE~g~p 1435 (1490)
T TIGR01271 1427 -SSVKQYDSI 1435 (1490)
T ss_pred -CEEEEeCCH
Confidence 899999985
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=605.45 Aligned_cols=460 Identities=18% Similarity=0.257 Sum_probs=344.3
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|. ..+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 45999999999999999999999999999999999998761 128999999998865432 3569999999989999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccc-cccccCc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCA-DTMVGDE 319 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~vg~~ 319 (1444)
+||+||+.++......+...+ . .+...+++.+++.+||++.. +..+
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMA------Y------------------------NAMYLRAKNLLRELQLDADNVTRPV--- 139 (500)
T ss_pred CcHHHHHHhhccccccccccC------H------------------------HHHHHHHHHHHHHcCCCCCcccCch---
Confidence 999999988643210000000 0 00122456789999998654 3333
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc
Q 000524 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1444)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1444)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ . +++|+.++|+..++.++||+|++|+
T Consensus 140 --~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tviiitHd~~~~~~~~d~i~~l~ 215 (500)
T TIGR02633 140 --GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-H-GVACVYISHKLNEVKAVCDTICVIR 215 (500)
T ss_pred --hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHHHHhCCEEEEEe
Confidence 46999999999999999999999999999999999999999999999864 3 4456668889999999999999999
Q ss_pred CCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCcchhhhhhcccCCCCccCCHHHHHHHHHhCcchhhhHHhhc
Q 000524 400 DGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELR 479 (1444)
Q Consensus 400 ~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (1444)
+|++++.|+.+++.. ....+.
T Consensus 216 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~--------------- 236 (500)
T TIGR02633 216 DGQHVATKDMSTMSE--------------------------------------------DDIITM--------------- 236 (500)
T ss_pred CCeEeeecCcccCCH--------------------------------------------HHHHHH---------------
Confidence 999987664321100 000000
Q ss_pred CcccCcccccccccccccCCchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhhccccCCCccccchhHHH
Q 000524 480 TPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAG 559 (1444)
Q Consensus 480 ~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g 559 (1444)
+. + .
T Consensus 237 -------------------------------------------------------------~~--~--~----------- 240 (500)
T TIGR02633 237 -------------------------------------------------------------MV--G--R----------- 240 (500)
T ss_pred -------------------------------------------------------------Hh--C--c-----------
Confidence 00 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHhhhcCCccChhhhHHHHHHHHhhHHHHHHHHHHhhhhhccccCCCHhHHHHH
Q 000524 560 ALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQ 639 (1444)
Q Consensus 560 ~lf~~~~~~~f~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~ 639 (1444)
+
T Consensus 241 ------------------------~------------------------------------------------------- 241 (500)
T TIGR02633 241 ------------------------E------------------------------------------------------- 241 (500)
T ss_pred ------------------------c-------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccCccchhhhHHHHHHHcHHHHHHHHHHHHhhcCC
Q 000524 640 YLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGY 719 (1444)
Q Consensus 640 ~l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~ 719 (1444)
.+
T Consensus 242 ---------------------------------------------------~~--------------------------- 243 (500)
T TIGR02633 242 ---------------------------------------------------IT--------------------------- 243 (500)
T ss_pred ---------------------------------------------------cc---------------------------
Confidence 00
Q ss_pred cccccCCCCcccchHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccccccccccccccc
Q 000524 720 SWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRG 799 (1444)
Q Consensus 720 ~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1444)
. ... .
T Consensus 244 ---~----------------------------------------------------~~~--------------------~ 248 (500)
T TIGR02633 244 ---S----------------------------------------------------LYP--------------------H 248 (500)
T ss_pred ---c----------------------------------------------------ccc--------------------c
Confidence 0 000 0
Q ss_pred ccccccCCCCCCcccCCCCCcchhhhhcccCCCCCccCcccCCCCceeEEeceeeeeecchhhhhccccCCceEEeeccE
Q 000524 800 TVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLS 879 (1444)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs 879 (1444)
. . . +. ...-+.++|+++.+... +++.+|+|+|
T Consensus 249 -------------~------~-------~----~~--------~~~~l~~~~l~~~~~~~----------~~~~~l~~is 280 (500)
T TIGR02633 249 -------------E------P-------H----EI--------GDVILEARNLTCWDVIN----------PHRKRVDDVS 280 (500)
T ss_pred -------------c------c-------c----CC--------CCceEEEeCCccccccc----------ccccccccce
Confidence 0 0 0 00 00125666666543100 1235899999
Q ss_pred EEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc----ccccceEEEEecCC---CCCCCCcHHHH
Q 000524 880 GAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IHSPFVTVYES 952 (1444)
Q Consensus 880 ~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~---~~~~~lTv~e~ 952 (1444)
+++++||++||+|||||||||||++|+|...+ +.+|+|.++|.++.. ...++.+||++|+. .+++.+||+|+
T Consensus 281 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~ 359 (500)
T TIGR02633 281 FSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKN 359 (500)
T ss_pred eEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHH
Confidence 99999999999999999999999999998642 137999999987642 12345689999995 47889999999
Q ss_pred HHHHHH--hcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000524 953 LLYSAW--LRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1444)
Q Consensus 953 l~f~a~--lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgL 1029 (1444)
+.+... ............++.++++++.+++.+ ..++.+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~L 434 (500)
T TIGR02633 360 ITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGV 434 (500)
T ss_pred hcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCc
Confidence 987532 111001122334456889999999964 456654 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCCC
Q 000524 1030 DARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1085 (1444)
Q Consensus 1030 D~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~~ 1085 (1444)
|+.++..+++.|++++++|.|||+++|++. ++.+.||++++|++ |+++..++..
T Consensus 435 D~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 435 DVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred CHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 999999999999999888999999999986 68889999999985 7888877653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-61 Score=602.51 Aligned_cols=453 Identities=21% Similarity=0.303 Sum_probs=343.1
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 35999999999999999999999999999999999999987 9999999998754322 3579999999989999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
+||+||+.++......+. . + ..+....++.+++.+||++..+..+
T Consensus 94 ~tv~~~l~~~~~~~~~~~----~----------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~---- 138 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGI----V----------------N-----------RRLLNYEAREQLEHLGVDIDPDTPL---- 138 (501)
T ss_pred CCHHHHHHhcccccccCC----C----------------C-----------HHHHHHHHHHHHHHcCCCCCcCCch----
Confidence 999999998532100000 0 0 0011224567899999987666544
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ . +++|+.++|+..++.+++|+|++|++
T Consensus 139 -~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiiitHd~~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 139 -KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-E-GRVILYVSHRMEEIFALCDAITVFKD 215 (501)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999864 3 44566688888899999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCcchhhhhhcccCCCCccCCHHHHHHHHHhCcchhhhHHhhcC
Q 000524 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1444)
Q Consensus 401 G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (1444)
|+++..++..+. .+.++..+.
T Consensus 216 G~i~~~~~~~~~-------------------------------------------~~~~~~~~~---------------- 236 (501)
T PRK11288 216 GRYVATFDDMAQ-------------------------------------------VDRDQLVQA---------------- 236 (501)
T ss_pred CEEEeecCcccc-------------------------------------------CCHHHHHHH----------------
Confidence 999865421000 000000000
Q ss_pred cccCcccccccccccccCCchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhhccccCCCccccchhHHHH
Q 000524 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGA 560 (1444)
Q Consensus 481 ~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~ 560 (1444)
+. . .. .
T Consensus 237 ------------------------------------------------------------~~--~--~~-~--------- 242 (501)
T PRK11288 237 ------------------------------------------------------------MV--G--RE-I--------- 242 (501)
T ss_pred ------------------------------------------------------------hc--C--CC-c---------
Confidence 00 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHhhhcCCccChhhhHHHHHHHHhhHHHHHHHHHHhhhhhccccCCCHhHHHHHH
Q 000524 561 LFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQY 640 (1444)
Q Consensus 561 lf~~~~~~~f~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ 640 (1444)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccCccchhhhHHHHHHHcHHHHHHHHHHHHhhcCCc
Q 000524 641 LLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYS 720 (1444)
Q Consensus 641 l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~ 720 (1444)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCcccchHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccccccccccccccc
Q 000524 721 WKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGT 800 (1444)
Q Consensus 721 ~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1444)
.. . ..
T Consensus 243 ---------------------------------------------------------~~----------------~-~~- 247 (501)
T PRK11288 243 ---------------------------------------------------------GD----------------I-YG- 247 (501)
T ss_pred ---------------------------------------------------------cc----------------c-cc-
Confidence 00 0 00
Q ss_pred cccccCCCCCCcccCCCCCcchhhhhcccCCCCCccCcccCCCCceeEEeceeeeeecchhhhhccccCCceEEeeccEE
Q 000524 801 VQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSG 880 (1444)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~ 880 (1444)
. . . ... .+..+.++|+++ ..+++|+|+
T Consensus 248 ------------~------~-------~---~~~--------~~~~l~~~~~~~-----------------~~~l~~isl 274 (501)
T PRK11288 248 ------------Y------R-------P---RPL--------GEVRLRLDGLKG-----------------PGLREPISF 274 (501)
T ss_pred ------------c------c-------c---cCC--------CCcEEEEecccc-----------------CCcccceeE
Confidence 0 0 0 000 011355666642 138999999
Q ss_pred EEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc----ccccceEEEEecCC---CCCCCCcHHHHH
Q 000524 881 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IHSPFVTVYESL 953 (1444)
Q Consensus 881 ~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~---~~~~~lTv~e~l 953 (1444)
++++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++ .+++.+|+.|++
T Consensus 275 ~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l 352 (501)
T PRK11288 275 SVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNI 352 (501)
T ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHh
Confidence 999999999999999999999999999865 347999999986542 12245689999986 478889999999
Q ss_pred HHHHHhcC-CCC--CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000524 954 LYSAWLRL-PPE--VDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1444)
Q Consensus 954 ~f~a~lr~-~~~--~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgL 1029 (1444)
.+...... +.. ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|++|||||||+||
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~L 427 (501)
T PRK11288 353 NISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGI 427 (501)
T ss_pred ccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCC
Confidence 87532111 000 01222345688999999994 5667764 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCCCcch
Q 000524 1030 DARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHS 1088 (1444)
Q Consensus 1030 D~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~~~~~ 1088 (1444)
|..+...+++.|+++++.|.|||+++|++. ++.+.+|++++|++ |++++.|..++.+
T Consensus 428 D~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~~ 484 (501)
T PRK11288 428 DVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQAT 484 (501)
T ss_pred CHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccccCC
Confidence 999999999999999888999999999986 68889999999985 7999999876443
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-60 Score=592.71 Aligned_cols=450 Identities=17% Similarity=0.254 Sum_probs=340.4
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 46999999999999999999999999999999999999987 9999999998754322 3569999999988999
Q ss_pred CCHHHHHHHhhh-hcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000524 241 MTVRETLAFSAR-CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1444)
Q Consensus 241 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1444)
+||+||+.++.. ..+... +. .+....++.+++.+||++..+..+
T Consensus 88 ~tv~~~l~~~~~~~~~~~~---------------------~~-----------~~~~~~~~~~l~~~~l~~~~~~~~--- 132 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFV---------------------DQ-----------DKMYRDTKAIFDELDIDIDPRAKV--- 132 (491)
T ss_pred CCHHHHhhccccccccccc---------------------CH-----------HHHHHHHHHHHHHcCCCCCccCch---
Confidence 999999987532 110000 00 001123567889999987766555
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc
Q 000524 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1444)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1444)
..|||||||||+||++|+.+|++|+|||||+|||+.+..++.+.|+++++ .+ .+|+.++|+.+++.++||+|++|+
T Consensus 133 --~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g-~tvii~tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 133 --ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RG-CGIVYISHKMEEIFQLCDEITILR 208 (491)
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC-CEEEEEecCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999864 34 455567888899999999999999
Q ss_pred CCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCcchhhhhhcccCCCCccCCHHHHHHHHHhCcchhhhHHhhc
Q 000524 400 DGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELR 479 (1444)
Q Consensus 400 ~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (1444)
+|+++..|+.+++.. ++..+.+
T Consensus 209 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~~-------------- 230 (491)
T PRK10982 209 DGQWIATQPLAGLTM--------------------------------------------DKIIAMM-------------- 230 (491)
T ss_pred CCEEEeecChhhCCH--------------------------------------------HHHHHHH--------------
Confidence 999998876432100 0000000
Q ss_pred CcccCcccccccccccccCCchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhhccccCCCccccchhHHH
Q 000524 480 TPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAG 559 (1444)
Q Consensus 480 ~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g 559 (1444)
. + ..
T Consensus 231 --------------------------------------------------------------~--~--~~---------- 234 (491)
T PRK10982 231 --------------------------------------------------------------V--G--RS---------- 234 (491)
T ss_pred --------------------------------------------------------------h--C--CC----------
Confidence 0 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHhhhcCCccChhhhHHHHHHHHhhHHHHHHHHHHhhhhhccccCCCHhHHHHH
Q 000524 560 ALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQ 639 (1444)
Q Consensus 560 ~lf~~~~~~~f~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~ 639 (1444)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccCccchhhhHHHHHHHcHHHHHHHHHHHHhhcCC
Q 000524 640 YLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGY 719 (1444)
Q Consensus 640 ~l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~ 719 (1444)
.
T Consensus 235 ---------------------------------------------------~---------------------------- 235 (491)
T PRK10982 235 ---------------------------------------------------L---------------------------- 235 (491)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred cccccCCCCcccchHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccccccccccccccc
Q 000524 720 SWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRG 799 (1444)
Q Consensus 720 ~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1444)
. ... .
T Consensus 236 ---~---------------------------------------------------~~~---------------------~ 240 (491)
T PRK10982 236 ---T---------------------------------------------------QRF---------------------P 240 (491)
T ss_pred ---c---------------------------------------------------ccc---------------------c
Confidence 0 000 0
Q ss_pred ccccccCCCCCCcccCCCCCcchhhhhcccCCCCCccCcccCCCCceeEEeceeeeeecchhhhhccccCCceEEeeccE
Q 000524 800 TVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLS 879 (1444)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs 879 (1444)
.. . . . + .+..+.++|+++.. +.+|+|||
T Consensus 241 -------------~~-----~-------~----~-------~-~~~~i~~~~l~~~~---------------~~~l~~vs 268 (491)
T PRK10982 241 -------------DK-----E-------N----K-------P-GEVILEVRNLTSLR---------------QPSIRDVS 268 (491)
T ss_pred -------------cc-----c-------C----C-------C-CCcEEEEeCccccc---------------Ccccceee
Confidence 00 0 0 0 0 01136677776541 13899999
Q ss_pred EEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEEecCCC---CCCCCcHHHH
Q 000524 880 GAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQNDI---HSPFVTVYES 952 (1444)
Q Consensus 880 ~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~~---~~~~lTv~e~ 952 (1444)
+.+++||++||+||||||||||+++|+|...+ .+|+|.++|.++... ..++.++|++|+.. +++.+|+.++
T Consensus 269 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 346 (491)
T PRK10982 269 FDLHKGEILGIAGLVGAKRTDIVETLFGIREK--SAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFN 346 (491)
T ss_pred EEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC--CccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHh
Confidence 99999999999999999999999999998653 489999999876431 12455899999853 5778888777
Q ss_pred HHHHH--Hh-cCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000524 953 LLYSA--WL-RLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1444)
Q Consensus 953 l~f~a--~l-r~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsg 1028 (1444)
..+.. .. ...........++.+.++++.+++. +..++. +..||||||||++||++|+.+|+||+|||||+|
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~illLDEPt~g 421 (491)
T PRK10982 347 SLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRG 421 (491)
T ss_pred eehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 43221 01 1000011223345678899999995 445555 357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCCC
Q 000524 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1085 (1444)
Q Consensus 1029 LD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~~ 1085 (1444)
||+.+...+++.|+++.++|+|||+++|+++ ++.+.||++++|++ |+++..++..
T Consensus 422 LD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 422 IDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred cChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 9999999999999999888999999999986 58889999999986 7888877654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-59 Score=582.48 Aligned_cols=446 Identities=19% Similarity=0.250 Sum_probs=328.4
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCC--C--
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNH--I-- 238 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~--~-- 238 (1444)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.. +
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 4899999999999999999999999999999999999987 9999999977643321 2458999998642 1
Q ss_pred ----CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccc
Q 000524 239 ----GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT 314 (1444)
Q Consensus 239 ----~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1444)
..+||+|++.+.. +...+++.+++.+||++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~l~~~~~~ 131 (490)
T PRK10938 94 GEDDTGRTTAEIIQDEV------------------------------------------KDPARCEQLAQQFGITALLDR 131 (490)
T ss_pred chhhccccHHHhcccch------------------------------------------hHHHHHHHHHHHcCCHhhhhC
Confidence 1467777764310 001235677899999887776
Q ss_pred cccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCe
Q 000524 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1444)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1444)
.++ .|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++ .+ ++|+.++|+..++.+.+|+
T Consensus 132 ~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tvii~tH~~~~~~~~~d~ 204 (490)
T PRK10938 132 RFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SG-ITLVLVLNRFDEIPDFVQF 204 (490)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cC-CeEEEEeCCHHHHHhhCCE
Confidence 554 6999999999999999999999999999999999999999999999865 34 4555578888899999999
Q ss_pred EEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCcchhhhhhcccCCCCccCCHHHHHHHHHhCcchhhh
Q 000524 395 IILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKI 474 (1444)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1444)
|++|++|+++++|+.+++.+- +.+ . ....
T Consensus 205 v~~l~~G~i~~~~~~~~~~~~---------------~~~-------------------------~---~~~~-------- 233 (490)
T PRK10938 205 AGVLADCTLAETGEREEILQQ---------------ALV-------------------------A---QLAH-------- 233 (490)
T ss_pred EEEEECCEEEEeCCHHHHhcc---------------hhh-------------------------h---hhhh--------
Confidence 999999999999876643210 000 0 0000
Q ss_pred HHhhcCcccCcccccccccccccCCchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhhccccCCCccccc
Q 000524 475 SDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDG 554 (1444)
Q Consensus 475 ~~~l~~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtlf~~~~~~~~~~~~~ 554 (1444)
.+ .... .
T Consensus 234 -----------------------------------~~---------------------------------~~~~--~--- 240 (490)
T PRK10938 234 -----------------------------------SE---------------------------------QLEG--V--- 240 (490)
T ss_pred -----------------------------------hh---------------------------------ccCc--c---
Confidence 00 0000 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHhhhcCCccChhhhHHHHHHHHhhHHHHHHHHHHhhhhhccccCCCHh
Q 000524 555 GIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAG 634 (1444)
Q Consensus 555 ~~~~g~lf~~~~~~~f~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~ 634 (1444)
T Consensus 241 -------------------------------------------------------------------------------- 240 (490)
T PRK10938 241 -------------------------------------------------------------------------------- 240 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccCccchhhhHHHHHHHcHHHHHHHHHHHH
Q 000524 635 RFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVAN 714 (1444)
Q Consensus 635 ~ff~~~l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~n 714 (1444)
..|
T Consensus 241 -------------------------------------------------------~~~---------------------- 243 (490)
T PRK10938 241 -------------------------------------------------------QLP---------------------- 243 (490)
T ss_pred -------------------------------------------------------ccC----------------------
Confidence 000
Q ss_pred hhcCCcccccCCCCcccchHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccccccccc
Q 000524 715 EFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQD 794 (1444)
Q Consensus 715 ef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 794 (1444)
. . .
T Consensus 244 ----------------------------------------------------------------~--~-------~---- 246 (490)
T PRK10938 244 ----------------------------------------------------------------E--P-------D---- 246 (490)
T ss_pred ----------------------------------------------------------------c--c-------c----
Confidence 0 0 0
Q ss_pred cccccccccccCCCCCCcccCCCCCcchhhhhcccCCCCCccCcccCCCCceeEEeceeeeeecchhhhhccccCCceEE
Q 000524 795 NRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVL 874 (1444)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i 874 (1444)
.. . . ... .. ....-++++|+++.++ ++.+
T Consensus 247 ---~~-------------~------~--------~~~-~~-------~~~~~l~~~~l~~~~~-------------~~~i 275 (490)
T PRK10938 247 ---EP-------------S------A--------RHA-LP-------ANEPRIVLNNGVVSYN-------------DRPI 275 (490)
T ss_pred ---cc-------------c------c--------ccc-cC-------CCCceEEEeceEEEEC-------------CeeE
Confidence 00 0 0 000 00 0011378888887763 2359
Q ss_pred eeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc----ccccceEEEEecCCCCCC--CCc
Q 000524 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQNDIHSP--FVT 948 (1444)
Q Consensus 875 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~~~~~--~lT 948 (1444)
|+|+|+.+++||+++|+||||||||||+++|+|.... ..+|+|.++|.+... ...++.+||++|++.... ..|
T Consensus 276 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 354 (490)
T PRK10938 276 LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTS 354 (490)
T ss_pred EeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCc
Confidence 9999999999999999999999999999999996421 137999999976422 123456899999875543 256
Q ss_pred HHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000524 949 VYESLLYSAWL--RLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025 (1444)
Q Consensus 949 v~e~l~f~a~l--r~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEP 1025 (1444)
+++.+.+...- ....... ...++.++++++.++|.+ ..++.+ ..||||||||++||++|+.+|++|+||||
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEP 428 (490)
T PRK10938 355 VRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLALIVRALVKHPTLLILDEP 428 (490)
T ss_pred HHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 77766543211 1111111 223456889999999987 666653 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHH-hcceEEEEecCcEEEEE
Q 000524 1026 TSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPGIDIFD-AFDELFLMKRGGQEIYV 1081 (1444)
Q Consensus 1026 TsgLD~~s~~~i~~~l~~~~~~g-~tvi~t~Hqps~~i~~-~fD~v~ll~~gg~~~y~ 1081 (1444)
|+|||+.+...+++.|++++++| .|||+++|++. ++.+ .+|++++|++ |++++.
T Consensus 429 t~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~ 484 (490)
T PRK10938 429 LQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRY 484 (490)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEe
Confidence 99999999999999999998775 47999999986 4655 5899999986 676654
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=506.97 Aligned_cols=470 Identities=25% Similarity=0.320 Sum_probs=365.2
Q ss_pred ccceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCeecEEEECCccCCCCCcc-------ceEEEEcC
Q 000524 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEFVPE-------RTAAYISQ 233 (1444)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~~~~-------~~~~yv~Q 233 (1444)
....++++|||.+++||.++|+|.||||||-..+.+.|+++.. ...+|+|.|+|.++-....+ ..|+.++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 3467999999999999999999999999999999999998763 45689999999997554332 47999999
Q ss_pred CC--CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccc
Q 000524 234 HD--NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVC 311 (1444)
Q Consensus 234 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1444)
+| .+.|-.|+..-|.-..+++.... +..++.++-++|+..|+++-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg~~---------------------------------~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRGLS---------------------------------RAAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhccc---------------------------------HHHHHHHHHHHHHHcCCCch
Confidence 98 45676777777766555532111 11234456778999999876
Q ss_pred ccccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhh
Q 000524 312 ADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL 391 (1444)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~ 391 (1444)
...+ +..+..|||||||||.||.||+.+|++|+-||||++||.....+|.+.|+++-.+. +..++.|+|+..-+-.+
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~-gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHh-CcEEEEEeccHHHHHHh
Confidence 5433 46788999999999999999999999999999999999999999999999987654 56667799999999999
Q ss_pred cCeEEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCcchhhhhhcccCCCCccCCHHHHHHHHHhCcch
Q 000524 392 FDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVG 471 (1444)
Q Consensus 392 fD~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1444)
+|+|++|.+|++|++|+.+++.. .|.+ ||.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------pYT----------------- 254 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQH-------------------------PYT----------------- 254 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------hHH-----------------
Confidence 99999999999999998776521 1100 000
Q ss_pred hhhHHhhcCcccCcccccccccccccCCchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhhccccCCCcc
Q 000524 472 QKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSL 551 (1444)
Q Consensus 472 ~~~~~~l~~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtlf~~~~~~~~~~ 551 (1444)
|.++.
T Consensus 255 ---------------------------------------r~Ll~------------------------------------ 259 (534)
T COG4172 255 ---------------------------------------RKLLA------------------------------------ 259 (534)
T ss_pred ---------------------------------------HHHHh------------------------------------
Confidence 00000
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHhhhcCCccChhhhHHHHHHHHhhHHHHHHHHHHhhhhhccccCC
Q 000524 552 TDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDP 631 (1444)
Q Consensus 552 ~~~~~~~g~lf~~~~~~~f~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~ 631 (1444)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccCccchhhhHHHHHHHcHHHHHHHHH
Q 000524 632 NAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAI 711 (1444)
Q Consensus 632 ~~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al 711 (1444)
+
T Consensus 260 ---------------------------a---------------------------------------------------- 260 (534)
T COG4172 260 ---------------------------A---------------------------------------------------- 260 (534)
T ss_pred ---------------------------c----------------------------------------------------
Confidence 0
Q ss_pred HHHhhcCCcccccCCCCcccchHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccccccc
Q 000524 712 VANEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESN 791 (1444)
Q Consensus 712 ~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 791 (1444)
.|
T Consensus 261 -------------eP----------------------------------------------------------------- 262 (534)
T COG4172 261 -------------EP----------------------------------------------------------------- 262 (534)
T ss_pred -------------CC-----------------------------------------------------------------
Confidence 00
Q ss_pred ccccccccccccccCCCCCCcccCCCCCcchhhhhcccCCCCCccCcccCCCCceeEEeceeeeeecchhhhhccccCCc
Q 000524 792 KQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDK 871 (1444)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 871 (1444)
.+ . .. ...+..+.-+..+|++..++.+..+-. ...+.
T Consensus 263 --------------~g-----~--------------~~--------p~~~~~~~ll~~~~v~v~f~i~~g~~~--r~~~~ 299 (534)
T COG4172 263 --------------SG-----D--------------PP--------PLPEDAPVLLEVEDLRVWFPIKGGFLR--RTVDH 299 (534)
T ss_pred --------------CC-----C--------------CC--------CCCCCCCceEEecceEEEEecCCcccc--ccchh
Confidence 00 0 00 000001234555666555554322111 01234
Q ss_pred eEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcc------cccceEEEEecCCC--C
Q 000524 872 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE------TFARISGYCEQNDI--H 943 (1444)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~q~~~--~ 943 (1444)
..++++||+..++||.+||+|.||||||||-.+|.+...+ +|+|.++|.++... ..++.+-.|+||+. +
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSL 376 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSL 376 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCC
Confidence 5799999999999999999999999999999999987643 59999999987542 35677889999985 6
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEE
Q 000524 944 SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022 (1444)
Q Consensus 944 ~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illL 1022 (1444)
.|.+||.|-+.-+.....| ..+..+++++|.++|+.+||++. ++.. ...+|||||||++|||||+-+|++++|
T Consensus 377 sPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RY-----PhEFSGGQRQRIAIARAliLkP~~i~L 450 (534)
T COG4172 377 SPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRY-----PHEFSGGQRQRIAIARALILKPELILL 450 (534)
T ss_pred CcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcC-----CcccCcchhhHHHHHHHHhcCCcEEEe
Confidence 7999999988777666554 45778899999999999999873 3332 468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1023 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1023 DEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
|||||.||-.-+.+|.+.||++.++ |-+-++++||.. -+-.+||+|+||++ |++|..||.
T Consensus 451 DEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 451 DEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred cCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeC-CEEeeeCCH
Confidence 9999999999999999999999755 899999999986 47789999999985 899999996
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-57 Score=566.77 Aligned_cols=201 Identities=21% Similarity=0.282 Sum_probs=164.1
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
-+.++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|...+ .+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECC-c-
Confidence 488999988763 24699999999999999999999999999999999997653 479999854 1
Q ss_pred CcccccceEEEEecCC-CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHH
Q 000524 926 KQETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQ 1003 (1444)
Q Consensus 926 ~~~~~~~~~gyv~q~~-~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGq 1003 (1444)
..+||++|+. .+++.+||+|++.+....+.. ... ...++++++.+++.+ ..+.. +..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKV---GNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhcccccc---ccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999996 677889999999876432211 111 123457899999964 45555 35799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEE-EEc
Q 000524 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI-YVG 1082 (1444)
Q Consensus 1004 rkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~-y~G 1082 (1444)
|||++||++|+.+|++|+|||||+|||+.+...+++.|+++. .|||+++|++. .+...||++++|++||+++ +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---GCAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---CeEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 48999999986 5778899999998767776 455
Q ss_pred C
Q 000524 1083 P 1083 (1444)
Q Consensus 1083 ~ 1083 (1444)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=564.45 Aligned_cols=198 Identities=19% Similarity=0.272 Sum_probs=164.3
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 488999988773 23599999999999999999999999999999999997653 4799999873
Q ss_pred CcccccceEEEEecCCC--CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHH
Q 000524 926 KQETFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 926 ~~~~~~~~~gyv~q~~~--~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgG 1002 (1444)
+.+||++|+.. +.+.+|++|++.+. .... ..++.++++++.+++. +..+.. +..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~---~~~~-----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQW---RQEG-----DDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHh---ccCC-----ccHHHHHHHHHHcCCChhHhcCc-----ccccCHH
Confidence 45899999864 45679999998642 1111 1134578899999994 556655 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEE-EE
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI-YV 1081 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~-y~ 1081 (1444)
||||++||++|+.+|+||+|||||+|||+.+...+++.|+++ +.|||+++|++. .+...||++++|++ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999886 459999999986 57788999999996 6666 77
Q ss_pred cCC
Q 000524 1082 GPL 1084 (1444)
Q Consensus 1082 G~~ 1084 (1444)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-56 Score=561.19 Aligned_cols=201 Identities=20% Similarity=0.280 Sum_probs=163.7
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.++++|+++.+. ++.+|+|+|+.|++|++++|+||||||||||+++|+|...+ .+|+|.+++ +
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~-~- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGE-T- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECC-c-
Confidence 478899987763 24699999999999999999999999999999999997653 479999854 1
Q ss_pred CcccccceEEEEecCC-CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHH
Q 000524 926 KQETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQ 1003 (1444)
Q Consensus 926 ~~~~~~~~~gyv~q~~-~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGq 1003 (1444)
..+||++|+. .+++.+||.|++.+...... .... +..+.++++.+++.+ ..+..+ ..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999986 46788999999987642211 1111 123567899999964 455553 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEE-EEc
Q 000524 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI-YVG 1082 (1444)
Q Consensus 1004 rkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~-y~G 1082 (1444)
|||++||++|+.+|++|+|||||+|||+.+...+++.|+++. .|||+++|++. .+...||++++|++||+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999986 5778899999998767776 445
Q ss_pred C
Q 000524 1083 P 1083 (1444)
Q Consensus 1083 ~ 1083 (1444)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=544.16 Aligned_cols=211 Identities=20% Similarity=0.234 Sum_probs=173.1
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.++++|+++.++ + ..|+++|+++++||++||+||||||||||+++|+|...+ .+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe----
Confidence 377888876653 1 248999999999999999999999999999999998653 47999885
Q ss_pred CcccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000524 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 1005 (1444)
Q Consensus 926 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1005 (1444)
..++|++|+..+.+.+||+|++.+..... .. ...++++++.++|.+..++.+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDDL-----GS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 14799999988888899999998742111 11 124688999999998777764 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1006 Rl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
||+||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+...+|++++|+ |+++..|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--Ccceeeeec
Confidence 999999999999999999999999999999999999999765 899999999986 5778899999996 477777764
Q ss_pred Ccc---hhHHHHHHHhC
Q 000524 1085 GRH---SCQLISYFEAI 1098 (1444)
Q Consensus 1085 ~~~---~~~~~~yF~~~ 1098 (1444)
... ...+..|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 322 13455677776
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-54 Score=545.48 Aligned_cols=197 Identities=21% Similarity=0.358 Sum_probs=160.7
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.++|+++.++ ++.+|+|+|+.|++|+++||+|||||||||||++|+|...+ .+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP--VSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCC--
Confidence 478899988763 24699999999999999999999999999999999998653 4799998641
Q ss_pred CcccccceEEEEecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHH
Q 000524 926 KQETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 926 ~~~~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgG 1002 (1444)
..+||++|+. .+.+..|+.+++.- . .. ......+.++++.+++.. ..++.+ ..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~~----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--AP----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--Cc----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 24456677776531 1 11 112345789999999963 556654 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEE-EE
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI-YV 1081 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~-y~ 1081 (1444)
|||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++ +.|||+++|++. .+...||++++|++ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 349999999986 57788999999986 6776 78
Q ss_pred cCC
Q 000524 1082 GPL 1084 (1444)
Q Consensus 1082 G~~ 1084 (1444)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 875
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=544.78 Aligned_cols=202 Identities=24% Similarity=0.331 Sum_probs=163.2
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
-+.++|+++.++ ++.+|+|+|+.|++|+++||+|||||||||||++|+|... +.+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 478899988763 2469999999999999999999999999999999999765 34799988 4321
Q ss_pred CcccccceEEEEecCC-CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHH
Q 000524 926 KQETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQ 1003 (1444)
Q Consensus 926 ~~~~~~~~~gyv~q~~-~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGq 1003 (1444)
.+||++|+. .+++.+||.|++.+..... .... ....+.++++.+++. +..++.+ ..|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVNG--RPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---cccc--hHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 489999975 5778899999998753211 0111 123477889999985 4556554 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-cCcEEEEEc
Q 000524 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-RGGQEIYVG 1082 (1444)
Q Consensus 1004 rkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~-~gg~~~y~G 1082 (1444)
||||+||++|+.+|++|||||||+|||..+...+.+.|+++ +.|||+++|++. .+...||++++|+ +|.-..|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999876 469999999985 5778899999997 554455666
Q ss_pred CC
Q 000524 1083 PL 1084 (1444)
Q Consensus 1083 ~~ 1084 (1444)
+.
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 54
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-53 Score=499.65 Aligned_cols=452 Identities=21% Similarity=0.332 Sum_probs=349.8
Q ss_pred ccceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCcc----ceEEEEcCCCCCC
Q 000524 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHI 238 (1444)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1444)
...++|+|||+.++|||+++|+|.||||||||+|+|+|.++|+ +|+|.++|++.....|+ .-|+.|.|+..+.
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~ 95 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLV 95 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhcc
Confidence 4467999999999999999999999999999999999999998 99999999988766553 4688999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
|+|||.|||-++....... +-+ +.......+..+|+.+|+....++.|+
T Consensus 96 p~LsVaeNifLgre~~~~~---------------------g~i---------d~~~m~~~A~~~l~~lg~~~~~~~~v~- 144 (500)
T COG1129 96 PNLSVAENIFLGREPTRRF---------------------GLI---------DRKAMRRRARELLARLGLDIDPDTLVG- 144 (500)
T ss_pred CCccHHHHhhcccccccCC---------------------Ccc---------CHHHHHHHHHHHHHHcCCCCChhhhhh-
Confidence 9999999998875432100 000 001122346778999999755788887
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
.||+||||-|.||||+..++++++|||||++|+...+..+++.++++.. .+..||.++|..+|++++||+|.||
T Consensus 145 ----~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~--~Gv~ii~ISHrl~Ei~~i~DritVl 218 (500)
T COG1129 145 ----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA--QGVAIIYISHRLDEVFEIADRITVL 218 (500)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHHHHHhcCEEEEE
Confidence 4999999999999999999999999999999999999999999999863 5677788999999999999999999
Q ss_pred cCCeEEEecCh-hhHHHHHHhcCCCCCCCCChhHHHHhhcCcchhhhhhcccCCCCccCCHHHHHHHHHhCcchhhhHHh
Q 000524 399 SDGQIVYQGPR-ELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDE 477 (1444)
Q Consensus 399 ~~G~iv~~G~~-~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1444)
.||+++..++. ++. +.+++.+
T Consensus 219 RDG~~v~~~~~~~~~--------------------------------------------~~~~lv~-------------- 240 (500)
T COG1129 219 RDGRVVGTRPTAAET--------------------------------------------SEDELVR-------------- 240 (500)
T ss_pred eCCEEeeecccccCC--------------------------------------------CHHHHHH--------------
Confidence 99999877652 211 0000000
Q ss_pred hcCcccCcccccccccccccCCchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhhccccCCCccccchhH
Q 000524 478 LRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIY 557 (1444)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~ 557 (1444)
T Consensus 241 -------------------------------------------------------------------------------- 240 (500)
T COG1129 241 -------------------------------------------------------------------------------- 240 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHhhhcCCccChhhhHHHHHHHHhhHHHHHHHHHHhhhhhccccCCCHhHHH
Q 000524 558 AGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFF 637 (1444)
Q Consensus 558 ~g~lf~~~~~~~f~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff 637 (1444)
.|+|-
T Consensus 241 -------------------------------------------------------------------~MvGr-------- 245 (500)
T COG1129 241 -------------------------------------------------------------------LMVGR-------- 245 (500)
T ss_pred -------------------------------------------------------------------HhhCc--------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccCccchhhhHHHHHHHcHHHHHHHHHHHHhhc
Q 000524 638 KQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFL 717 (1444)
Q Consensus 638 ~~~l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~ 717 (1444)
+
T Consensus 246 -----------------------------------------------------------------------------~-- 246 (500)
T COG1129 246 -----------------------------------------------------------------------------E-- 246 (500)
T ss_pred -----------------------------------------------------------------------------c--
Confidence 0
Q ss_pred CCcccccCCCCcccchHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccccccccccccc
Q 000524 718 GYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRI 797 (1444)
Q Consensus 718 ~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1444)
.+. . |
T Consensus 247 ---~~~-----------------------~-------------------------~------------------------ 251 (500)
T COG1129 247 ---LED-----------------------L-------------------------F------------------------ 251 (500)
T ss_pred ---hhh-----------------------h-------------------------c------------------------
Confidence 000 0 0
Q ss_pred ccccccccCCCCCCcccCCCCCcchhhhhcccCCCCCccCcccCCCCceeEEeceeeeeecchhhhhccccCCceEEeec
Q 000524 798 RGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNG 877 (1444)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~ 877 (1444)
. . . ... ...+..+++++++. ...++|
T Consensus 252 -~---------------------------~--~-~~~------~~~~~~l~v~~l~~-----------------~~~~~d 277 (500)
T COG1129 252 -P---------------------------E--P-PEE------GIGEPVLEVRNLSG-----------------GGKVRD 277 (500)
T ss_pred -c---------------------------c--c-ccc------CCCCcEEEEecCCC-----------------CCceeC
Confidence 0 0 0 000 00011244444421 125789
Q ss_pred cEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEEecCCC---CCCCCcHH
Q 000524 878 LSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQNDI---HSPFVTVY 950 (1444)
Q Consensus 878 vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~~---~~~~lTv~ 950 (1444)
|||++++||++||-|-=|||+|-|+.+|.|... ...|+|.+||.+.... ..+.-++||+.|.. +++.++|.
T Consensus 278 vSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~ 355 (500)
T COG1129 278 VSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIA 355 (500)
T ss_pred ceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHH
Confidence 999999999999999999999999999999543 3489999999986543 34567899998754 67889999
Q ss_pred HHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000524 951 ESLLYSAWLRLPP--EVDSETRKMFIEEVMELVELKPLI-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027 (1444)
Q Consensus 951 e~l~f~a~lr~~~--~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTs 1027 (1444)
||+.++...+... -.+....++.+++..+.+++.... +.. +..||||.+||+.|||.|..+|+||+|||||.
T Consensus 356 ~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilDEPTR 430 (500)
T COG1129 356 ENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILDEPTR 430 (500)
T ss_pred HheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEECCCCc
Confidence 9998873333221 245555566788999999987532 232 46899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1028 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1028 gLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
|+|.-+..+|.+++++++++|.+||+++-+.. |+..+||||++|++ |+++-.=+.
T Consensus 431 GIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e~~~ 485 (500)
T COG1129 431 GIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGELDR 485 (500)
T ss_pred CcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEEecc
Confidence 99999999999999999999999999998874 89999999999996 787764333
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=499.47 Aligned_cols=220 Identities=28% Similarity=0.324 Sum_probs=173.4
Q ss_pred cceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCccceEEEEcCCCCCCCCCCH
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTV 243 (1444)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1444)
.+++|+|+|+.+.+|+.++|+|+||||||||||+|+|.+.|+ +|+|...+ .-+++|++|++...+..||
T Consensus 15 ~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~tv 83 (530)
T COG0488 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKTV 83 (530)
T ss_pred CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCccH
Confidence 467999999999999999999999999999999999999998 99998765 2379999999999999999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHH---HH-HHHHHhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID---VY-MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1444)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~---~~-~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1444)
.+.+.-+.. ..++...+..... ...++++.. .. ......++++.+.+++.++..||++.. ++.++
T Consensus 84 ~~~v~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~-- 152 (530)
T COG0488 84 LDYVIEGFG-----ELRELLAELEEAY---ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS-- 152 (530)
T ss_pred HHHHHhhhH-----HHHHHHHHHHHHH---HhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh--
Confidence 999987643 1122222222111 112222111 11 112233456677788999999999876 66555
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc
Q 000524 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1444)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1444)
.||||||.||+||++|+.+|++|+|||||++||..+..++-+.|++. .+ ++|.++|++...-+.|++|+-++
T Consensus 153 ---~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~V~t~I~~ld 224 (530)
T COG0488 153 ---SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDNVATHILELD 224 (530)
T ss_pred ---hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHHHhhheEEec
Confidence 69999999999999999999999999999999999999999988753 34 56668999999999999999999
Q ss_pred CCeE-EEecChhhHH
Q 000524 400 DGQI-VYQGPRELVL 413 (1444)
Q Consensus 400 ~G~i-v~~G~~~~~~ 413 (1444)
.|++ .|.|+++...
T Consensus 225 ~g~l~~y~Gny~~~~ 239 (530)
T COG0488 225 RGKLTPYKGNYSSYL 239 (530)
T ss_pred CCceeEecCCHHHHH
Confidence 9987 4778777554
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=524.85 Aligned_cols=200 Identities=20% Similarity=0.273 Sum_probs=157.8
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.++|+++.++ +++.+|+|+|+.|++|++++|+|||||||||||++|+|...+ .+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECCc--
Confidence 488999988773 123599999999999999999999999999999999997653 4799988652
Q ss_pred CcccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHH
Q 000524 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQR 1004 (1444)
Q Consensus 926 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGqr 1004 (1444)
..+||++|+. ...+++.++..+......+. .. ++.+.++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~-~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFPG-VP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhcCC-CC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 3589999975 34456666543221111111 11 234788999999974 44544 457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEE-EEcC
Q 000524 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI-YVGP 1083 (1444)
Q Consensus 1005 kRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~-y~G~ 1083 (1444)
|||+||++|+.+|++|+|||||+|||+.+...+.+.|++. +.|||+++|++. .+...||++++|++ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QGGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999998888765 349999999986 57788999999986 7877 7775
Q ss_pred C
Q 000524 1084 L 1084 (1444)
Q Consensus 1084 ~ 1084 (1444)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 4
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-49 Score=453.18 Aligned_cols=457 Identities=22% Similarity=0.312 Sum_probs=355.2
Q ss_pred cceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCcc----ceEEEEcCCCCCCC
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHIG 239 (1444)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1444)
...+++|||+.+++||+.+|+|.||||||||+++|.|.+.|+ +|+|.++|+++.-..|+ --||+|.||..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 567999999999999999999999999999999999999998 99999999998765554 46899999999999
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000524 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1444)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1444)
++||.|||..+..-... .+ -| ......+++.+.+..||+-..|.+|++
T Consensus 93 ~lTV~ENiiLg~e~~~~-~~-------------------~~-----------~~~~~~~i~~l~~~yGl~vdp~~~V~d- 140 (501)
T COG3845 93 TLTVAENIILGLEPSKG-GL-------------------ID-----------RRQARARIKELSERYGLPVDPDAKVAD- 140 (501)
T ss_pred ccchhhhhhhcCccccc-cc-------------------cC-----------HHHHHHHHHHHHHHhCCCCCccceeec-
Confidence 99999999987642110 00 00 011234567889999999988888875
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc
Q 000524 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1444)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1444)
||-||||||.|-++|+.+|++|+|||||+-|-|....++++.|+++++ . +.+||.|+|-..|+.+.+|++.+|.
T Consensus 141 ----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~-G~tIi~ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-E-GKTIIFITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhhCeeEEEe
Confidence 999999999999999999999999999999999999999999999875 3 4556668999999999999999999
Q ss_pred CCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCcchhhhhhcccCCCCccCCHHHHHHHHHhCcchhhhHHhhc
Q 000524 400 DGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELR 479 (1444)
Q Consensus 400 ~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (1444)
.|+++-.-+. . ...+.+++++.
T Consensus 215 ~Gkvvgt~~~--~-----------------------------------------~~~t~~ela~l--------------- 236 (501)
T COG3845 215 RGKVVGTVDP--V-----------------------------------------AETTEEELAEL--------------- 236 (501)
T ss_pred CCeEEeeecC--C-----------------------------------------CCCCHHHHHHH---------------
Confidence 9998643210 0 00001111000
Q ss_pred CcccCcccccccccccccCCchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhhccccCCCccccchhHHH
Q 000524 480 TPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAG 559 (1444)
Q Consensus 480 ~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g 559 (1444)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHhhhcCCccChhhhHHHHHHHHhhHHHHHHHHHHhhhhhccccCCCHhHHHHH
Q 000524 560 ALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQ 639 (1444)
Q Consensus 560 ~lf~~~~~~~f~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~ 639 (1444)
|+|
T Consensus 237 ------------------------------------------------------------------MvG----------- 239 (501)
T COG3845 237 ------------------------------------------------------------------MVG----------- 239 (501)
T ss_pred ------------------------------------------------------------------hcC-----------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccCccchhhhHHHHHHHcHHHHHHHHHHHHhhcCC
Q 000524 640 YLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGY 719 (1444)
Q Consensus 640 ~l~~~l~~~~~~~l~~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~ 719 (1444)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T COG3845 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCcccchHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccccccccccccccc
Q 000524 720 SWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRG 799 (1444)
Q Consensus 720 ~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~v~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1444)
.++. ..
T Consensus 240 --------------~~v~------------------------------------------------------------~~ 245 (501)
T COG3845 240 --------------REVV------------------------------------------------------------LR 245 (501)
T ss_pred --------------Cccc------------------------------------------------------------cc
Confidence 0000 00
Q ss_pred ccccccCCCCCCcccCCCCCcchhhhhcccCCCCCccCcccCCCCceeEEeceeeeeecchhhhhccccCCceEEeeccE
Q 000524 800 TVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLS 879 (1444)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs 879 (1444)
. . ..+...+ +.-++++|++...+. ....+++||
T Consensus 246 -------------~--------------~--~~~~~pg------~~vL~V~~L~v~~~~------------~~~~v~~vs 278 (501)
T COG3845 246 -------------V--------------V--KPPSTPG------EVVLEVEDLSVKDRR------------GVTAVKDVS 278 (501)
T ss_pred -------------c--------------c--cCCCCCC------CeEEEEeeeEeecCC------------CCceeeeee
Confidence 0 0 0000000 124667777654321 235799999
Q ss_pred EEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC-C---c-ccccceEEEEecCCC---CCCCCcHHH
Q 000524 880 GAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK-K---Q-ETFARISGYCEQNDI---HSPFVTVYE 951 (1444)
Q Consensus 880 ~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~-~---~-~~~~~~~gyv~q~~~---~~~~lTv~e 951 (1444)
|++++||++||.|..|-|-+.|+.+|+|..+. ..|+|.++|.+. . . ...+.-++|||+|.. +.+.+|+.|
T Consensus 279 ~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~e 356 (501)
T COG3845 279 FEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAE 356 (501)
T ss_pred eEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHH
Confidence 99999999999999999999999999997643 249999999986 2 1 123456899999874 358899999
Q ss_pred HHHHHHHhcC----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000524 952 SLLYSAWLRL----PPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027 (1444)
Q Consensus 952 ~l~f~a~lr~----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTs 1027 (1444)
|+.+...-+. ..-.+....++...++++.++.....-. ...+.||||++||+-+||||.++|++|+..+||.
T Consensus 357 N~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTr 432 (501)
T COG3845 357 NLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD----APARSLSGGNQQKLILARELARRPDLLIAAQPTR 432 (501)
T ss_pred HhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----cchhhcCCcceehhhhhhhhccCCCEEEEcCCCc
Confidence 9987643221 1124556667788999999998743211 1246899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCCC
Q 000524 1028 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1085 (1444)
Q Consensus 1028 gLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~~ 1085 (1444)
|||..+.+.|.+.|.+.++.|+.|++++-+.. |+++++|||.+|.+ |+++...+..
T Consensus 433 GLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~ 488 (501)
T COG3845 433 GLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPE 488 (501)
T ss_pred cccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceecccccc
Confidence 99999999999999999999999999999986 89999999999995 8998887764
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=363.35 Aligned_cols=221 Identities=26% Similarity=0.405 Sum_probs=187.1
Q ss_pred ccceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCC----CccceEEEEcCCCCCC
Q 000524 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF----VPERTAAYISQHDNHI 238 (1444)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~----~~~~~~~yv~Q~d~~~ 238 (1444)
...++|+|||+.|++||+++|+|||||||||||++|.|+..++ +|+|.++|.++... ..|+.+|+|+|+..+|
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLF 89 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeeccccccc
Confidence 4577999999999999999999999999999999999999998 99999999766421 2367899999999999
Q ss_pred CCCCHHHHHHHhhhh-cCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccccc
Q 000524 239 GEMTVRETLAFSARC-QGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1444)
|++||.||+..+-.. ++. ...+++.+..++|+.+||.+.+|.+.
T Consensus 90 PHlTvleNv~lap~~v~~~----------------------------------~k~eA~~~A~~lL~~VGL~~ka~~yP- 134 (240)
T COG1126 90 PHLTVLENVTLAPVKVKKL----------------------------------SKAEAREKALELLEKVGLADKADAYP- 134 (240)
T ss_pred ccchHHHHHHhhhHHHcCC----------------------------------CHHHHHHHHHHHHHHcCchhhhhhCc-
Confidence 999999999987431 110 11223445678899999999998654
Q ss_pred CccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEE
Q 000524 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1444)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1444)
..|||||||||+|||||+.+|+++++|||||+|||+...++.+.++++++ .|.|. +.++|....+.+.+|||+.
T Consensus 135 ----~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTM-ivVTHEM~FAr~VadrviF 208 (240)
T COG1126 135 ----AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTM-IIVTHEMGFAREVADRVIF 208 (240)
T ss_pred ----cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeE-EEEechhHHHHHhhheEEE
Confidence 57999999999999999999999999999999999999999999999986 44454 4478999999999999999
Q ss_pred EcCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHh
Q 000524 398 LSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE 435 (1444)
Q Consensus 398 L~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~ 435 (1444)
|++|+++.+|+++++ |..|.+.-..+|+..
T Consensus 209 md~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 209 MDQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred eeCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 999999999999876 455665556666654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=360.38 Aligned_cols=214 Identities=26% Similarity=0.381 Sum_probs=188.2
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|++.++ +...+|+|||++|++||+++|+|||||||||||++|.+... +.+|+|.++|.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 5677777666 35689999999999999999999999999999999999866 34899999996543
Q ss_pred c----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 927 Q----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 927 ~----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
. ...|+.+|+|+|+..+||++||.||+..+-..- ...++++.++...+.|+.+||.+.+|.. +..||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcH
Confidence 2 346788999999999999999999999874322 2345666777789999999999999987 4679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
|||||+|||||+.+|+++++|||||.|||+...+|.+.+++++++|.|+||+||.... .-+.+|||+.|++ |+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999874 6678999999985 8999999
Q ss_pred CC
Q 000524 1083 PL 1084 (1444)
Q Consensus 1083 ~~ 1084 (1444)
++
T Consensus 219 ~p 220 (240)
T COG1126 219 PP 220 (240)
T ss_pred CH
Confidence 75
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=392.73 Aligned_cols=202 Identities=20% Similarity=0.274 Sum_probs=155.1
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..+.++|+++.++. +..++++++|-+.+++.+|++||||+|||||||++.|...+ ..|.|.-.-+.
T Consensus 388 pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H~ 453 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSHN 453 (614)
T ss_pred CeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--ccccccccccc
Confidence 45788999887752 22589999999999999999999999999999999997653 46766543221
Q ss_pred CCcccccceEEEEecC--CCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 925 KKQETFARISGYCEQN--DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 925 ~~~~~~~~~~gyv~q~--~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
..++-.|. +.+.-..++-|+++=. .+ .+.+.+.+..++..+||....+.. ..+.||+|
T Consensus 454 --------~~~~y~Qh~~e~ldl~~s~le~~~~~----~~----~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~G 513 (614)
T KOG0927|consen 454 --------KLPRYNQHLAEQLDLDKSSLEFMMPK----FP----DEKELEEMRSILGRFGLTGDAQVV----PMSQLSDG 513 (614)
T ss_pred --------cchhhhhhhHhhcCcchhHHHHHHHh----cc----ccchHHHHHHHHHHhCCCcccccc----chhhcccc
Confidence 12222332 2222345666655311 11 133455688899999999544443 25789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
||+||.+|+.++..|.||+|||||+|||..+...+-++|.+. ..+||.++|+-.. |-+.++++.+..+++...+.|
T Consensus 514 qr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G 589 (614)
T KOG0927|consen 514 QRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDG 589 (614)
T ss_pred cchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCc
Confidence 999999999999999999999999999999999999999876 5689999999763 777899999999999999998
Q ss_pred CC
Q 000524 1083 PL 1084 (1444)
Q Consensus 1083 ~~ 1084 (1444)
..
T Consensus 590 ~i 591 (614)
T KOG0927|consen 590 DI 591 (614)
T ss_pred cH
Confidence 74
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=388.14 Aligned_cols=223 Identities=29% Similarity=0.426 Sum_probs=193.8
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|++..+. .++.+|+||||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 5 i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~ 70 (293)
T COG1131 5 IEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVV 70 (293)
T ss_pred eeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCc
Confidence 55667766553 136799999999999999999999999999999999998764 5899999998765
Q ss_pred c--ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000524 927 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 1004 (1444)
Q Consensus 927 ~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1004 (1444)
. ...++.+||++|++.+++.+||+|+|.|.+.++.+.. +..+++++++++.++|.+..++. +++||+|||
T Consensus 71 ~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~k 142 (293)
T COG1131 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGMK 142 (293)
T ss_pred cCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHH
Confidence 4 3567789999999999999999999999999987543 44556799999999999855554 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcC
Q 000524 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083 (1444)
Q Consensus 1005 kRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g-~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~ 1083 (1444)
||++||+||+++|++|||||||+|||+.++..+++.|++++++| +||++++|+++ ++...||+|++|++ |++++.|+
T Consensus 143 qrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~ 220 (293)
T COG1131 143 QRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGT 220 (293)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999887 89999999997 78889999999985 89999997
Q ss_pred CCcchhHHHHHHHh
Q 000524 1084 LGRHSCQLISYFEA 1097 (1444)
Q Consensus 1084 ~~~~~~~~~~yF~~ 1097 (1444)
. .++...+..
T Consensus 221 ~----~~l~~~~~~ 230 (293)
T COG1131 221 P----EELKEKFGG 230 (293)
T ss_pred H----HHHHHhhcc
Confidence 6 345555543
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=366.69 Aligned_cols=224 Identities=27% Similarity=0.354 Sum_probs=194.2
Q ss_pred ccceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc------cceEEEEcCCCC
Q 000524 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDN 236 (1444)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~ 236 (1444)
...++|+|||+.|++|++.+|+|+||||||||++++.++-.|+ +|+|.++|+++..+.. |+.+|+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 4467999999999999999999999999999999999999998 9999999988876543 478999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccc
Q 000524 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1444)
++...||.||++|+.+..+... .+.+.++.++|+.+||++.+|..
T Consensus 94 LLssrTV~~NvA~PLeiag~~k----------------------------------~ei~~RV~elLelVgL~dk~~~y- 138 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVPK----------------------------------AEIKQRVAELLELVGLSDKADRY- 138 (339)
T ss_pred ccccchHHhhhhhhHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhccC-
Confidence 9999999999999988765321 12345788899999999988755
Q ss_pred cCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEE
Q 000524 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1444)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1444)
+.+|||||||||+|||||+.+|+||++|||||+|||.|+..|.+.|+++.++.+ .+|+.++|-++-+-++||+|.
T Consensus 139 ----P~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lg-lTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 139 ----PAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELG-LTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred ----chhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcC-CEEEEEechHHHHHHHhhhhe
Confidence 457999999999999999999999999999999999999999999999987654 555558888999999999999
Q ss_pred EEcCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhc
Q 000524 397 LLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVT 437 (1444)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~ 437 (1444)
+|++|+++++|+..++ |..|.+.-...|+.+..
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETL 246 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhc
Confidence 9999999999999887 44566555556665544
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=363.82 Aligned_cols=218 Identities=23% Similarity=0.318 Sum_probs=190.9
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.+++++..+... ..+...+|+|||++|++||++||+|+||||||||++++.+...+ .+|+|.+||.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P--tsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEEcCEecc
Confidence 5677776554321 11235799999999999999999999999999999999997664 5899999997654
Q ss_pred c------ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000524 927 Q------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000 (1444)
Q Consensus 927 ~------~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1000 (1444)
. ...|+.+|+++|+..++...||+||+.|...+.. .++++++++|.++|+.+||.+..+.. +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 3 2467889999999999999999999999877653 56888899999999999999998887 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEE
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1079 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~ 1079 (1444)
|||||||+|||||+.+|+||++|||||.|||++...|.+.|+++.++ |.||++++|++. -+-+.|||+.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999766 999999999986 37788999999985 8999
Q ss_pred EEcCC
Q 000524 1080 YVGPL 1084 (1444)
Q Consensus 1080 y~G~~ 1084 (1444)
..|+.
T Consensus 222 E~G~v 226 (339)
T COG1135 222 EEGTV 226 (339)
T ss_pred EeccH
Confidence 99997
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=361.18 Aligned_cols=216 Identities=26% Similarity=0.433 Sum_probs=184.6
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.++++|+++.++ .+ .+|+|||+++++|++++|+||||||||||+|+|.|... +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~------------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG------------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC------------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 478999999885 12 59999999999999999999999999999999999765 3589999999887
Q ss_pred CcccccceEEEEecCCCC---CCCCcHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000524 926 KQETFARISGYCEQNDIH---SPFVTVYESLLYSAWLRLP--PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000 (1444)
Q Consensus 926 ~~~~~~~~~gyv~q~~~~---~~~lTv~e~l~f~a~lr~~--~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1000 (1444)
.+..-+..+|||||...+ +| +||+|-+..+..-+.. .... +..++.++++|+.+|+.+.+|..+| .||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LS 141 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELS 141 (254)
T ss_pred cccccCCeEEEcCcccccCCCCC-cCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccC
Confidence 654445679999996533 33 7999998865332221 1122 2335679999999999999999876 599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEE
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1080 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y 1080 (1444)
|||+||+-|||||+++|++|+|||||+|+|+.++..++++|+++.++|+||++++|+++ .+.+.||+++.|+ +++++
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~ 218 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIA 218 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEe
Confidence 99999999999999999999999999999999999999999999988999999999997 5999999999997 58999
Q ss_pred EcCCCc
Q 000524 1081 VGPLGR 1086 (1444)
Q Consensus 1081 ~G~~~~ 1086 (1444)
.|++.+
T Consensus 219 ~G~~~~ 224 (254)
T COG1121 219 SGPPEE 224 (254)
T ss_pred ccChhh
Confidence 999853
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=401.23 Aligned_cols=216 Identities=23% Similarity=0.350 Sum_probs=187.1
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..++++|++..++. +++.+|+|+|+.+++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCEE
Confidence 46889999877731 135699999999999999999999999999999999998763 48999999988
Q ss_pred CCc--ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 925 KKQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 925 ~~~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
+.. ...++.+|||+|++.+++.+||+|++.|.++++. ...++.++.++++++.+||.+..++.+ +.||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 643 2345679999999999999999999999877653 223344556899999999998888764 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
|||||+||+||+.+|+||+|||||+|||+.+++.+++.|+++. +|+|||+++|++. ++...+||+++|++ |+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999995 6999999999986 67788999999996 7999999
Q ss_pred CC
Q 000524 1083 PL 1084 (1444)
Q Consensus 1083 ~~ 1084 (1444)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 75
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=349.54 Aligned_cols=210 Identities=25% Similarity=0.386 Sum_probs=185.0
Q ss_pred cceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCC
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGE 240 (1444)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 240 (1444)
.+.+++|+|++|++||+++++|||||||||+||+|.++++|+ +|+|.+||+++.+..+ ||.+|||-|+-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 567999999999999999999999999999999999999998 9999999999987654 6899999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
+||.||+.+--.+.+... ++.+.+++++|+.+||+.. ...++.
T Consensus 90 ~Tv~eNIa~VP~L~~w~k----------------------------------~~i~~r~~ELl~lvgL~p~---~~~~Ry 132 (309)
T COG1125 90 LTVAENIATVPKLLGWDK----------------------------------ERIKKRADELLDLVGLDPS---EYADRY 132 (309)
T ss_pred ccHHHHHHhhhhhcCCCH----------------------------------HHHHHHHHHHHHHhCCCHH---HHhhcC
Confidence 999999998766654321 1234568999999999852 123467
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
++.|||||+|||.+||||+.+|++++||||+++|||-++.++.+.++++-+..+ +||+.++|+.+|++.++|+|++|++
T Consensus 133 P~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~-kTivfVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 133 PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELG-KTIVFVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred chhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhC-CEEEEEecCHHHHHhhhceEEEecC
Confidence 789999999999999999999999999999999999999999999888766555 4555689999999999999999999
Q ss_pred CeEEEecChhhHHH
Q 000524 401 GQIVYQGPRELVLE 414 (1444)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1444)
|+++..+++++++.
T Consensus 212 G~i~Q~~~P~~il~ 225 (309)
T COG1125 212 GEIVQYDTPDEILA 225 (309)
T ss_pred CeEEEeCCHHHHHh
Confidence 99999999999864
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=362.43 Aligned_cols=217 Identities=28% Similarity=0.391 Sum_probs=187.5
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
++.+|+++.|+ ++.+|+|+||++++|++++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 3 L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~ 67 (258)
T COG1120 3 LEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIA 67 (258)
T ss_pred eEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchh
Confidence 67889988884 4679999999999999999999999999999999999766 34899999998865
Q ss_pred c---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 927 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 927 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
. +.+++.++|+||.......+||+|.+.++..-.... ....++..+.++++|+.+++.+.++..+ ..||||
T Consensus 68 ~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGG 142 (258)
T COG1120 68 SLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGG 142 (258)
T ss_pred hcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChh
Confidence 4 457789999999998888999999998764321111 1123334446999999999999999874 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEE
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1081 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~ 1081 (1444)
||||+.|||||+++|+||+||||||+||...+..+++.++++++ +|.|||+++|++. -....||++++|++ |+++..
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~-G~i~a~ 220 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKD-GKIVAQ 220 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEee
Confidence 99999999999999999999999999999999999999999985 4999999999997 47889999999985 899999
Q ss_pred cCCC
Q 000524 1082 GPLG 1085 (1444)
Q Consensus 1082 G~~~ 1085 (1444)
|++.
T Consensus 221 G~p~ 224 (258)
T COG1120 221 GTPE 224 (258)
T ss_pred cCcc
Confidence 9874
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=346.04 Aligned_cols=230 Identities=26% Similarity=0.374 Sum_probs=198.2
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.+++++++.+. +.+.|++|||++|++||+++||||||+||||||+.|.|...+ .+|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcch
Confidence 47888887765 457899999999999999999999999999999999998774 489999999886
Q ss_pred Ccc------cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCc
Q 000524 926 KQE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSLVGLPGVSG 998 (1444)
Q Consensus 926 ~~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~ 998 (1444)
.+. ..++..|+++|+-.+|..+||+||+.|.. |.....+++..++.+..-|+.+||... .+.. +..
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafpl--re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPL--REHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheeh--HhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 541 35678999999999999999999998853 333455677777788888999999987 5554 578
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 999 lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
||||++||+++||||+.+|+|||+||||+||||.++..+-++|+++.+. |.|++++|||.. +++..+|++++|.+ |+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gk 223 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GK 223 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999876 999999999997 69999999999996 89
Q ss_pred EEEEcCCCc----chhHHHHHHHhCC
Q 000524 1078 EIYVGPLGR----HSCQLISYFEAIP 1099 (1444)
Q Consensus 1078 ~~y~G~~~~----~~~~~~~yF~~~~ 1099 (1444)
++..|+..+ ...-+.+||....
T Consensus 224 v~~~Gt~~el~~sd~P~v~qf~~G~~ 249 (263)
T COG1127 224 VIAEGTPEELLASDDPWVRQFFNGIR 249 (263)
T ss_pred EEEeCCHHHHHhCCCHHHHHHhcCCC
Confidence 999999742 1135667887654
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=352.42 Aligned_cols=204 Identities=24% Similarity=0.359 Sum_probs=180.6
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.++++++++. ...+|+|||++|.+||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccc
Confidence 367778877764 25799999999999999999999999999999999998764 489999999987
Q ss_pred CcccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000524 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 1005 (1444)
Q Consensus 926 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1005 (1444)
.. ....+|||+|++.++|..||+||+.|+...+. .+++++.+++++.|+.+||.++.|.. +..|||||||
T Consensus 68 ~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 TG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred CC--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 32 34568999999999999999999999877653 34556667899999999999999887 5689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecC
Q 000524 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1075 (1444)
Q Consensus 1006 Rl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~g 1075 (1444)
||+|||||+.+|+||+||||.+.||+.|+..+++.|.++.++ +.|||++||+.. |...+.|||++|+.+
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 999999999999999999999999999999999999998754 899999999996 788899999999864
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=376.09 Aligned_cols=217 Identities=31% Similarity=0.436 Sum_probs=193.1
Q ss_pred EeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCcc-ceEEEEcCCCCCCCCCCHHH
Q 000524 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEMTVRE 245 (1444)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 245 (1444)
+|+|+|+.|++||+++|+|||||||||||++|||+.+|+ +|+|.++|.++++..|+ |.+|+|+|+..++|+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999998 99999999999998875 88999999999999999999
Q ss_pred HHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccccc
Q 000524 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1444)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1444)
|+.|+.+.++... .+.+.+++++.+.|+|++..|.+ +++||
T Consensus 95 Niaf~Lk~~~~~k----------------------------------~ei~~rV~eva~~L~l~~lL~r~-----P~~LS 135 (338)
T COG3839 95 NIAFGLKLRGVPK----------------------------------AEIDKRVKEVAKLLGLEHLLNRK-----PLQLS 135 (338)
T ss_pred HhhhhhhhCCCch----------------------------------HHHHHHHHHHHHHcCChhHHhcC-----cccCC
Confidence 9999998765311 12345688899999999988855 45799
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 000524 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1444)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~ 405 (1444)
|||||||++||||+.+|++++||||.|.||...+..+...|+++-+ .-++++|.++|+..|+..++|+|.+|++|+|..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~-~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE-RLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHH-hcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999999999999998654 445666678999999999999999999999999
Q ss_pred ecChhhHHHHHHhcCCCCCCCCChhHHHH
Q 000524 406 QGPRELVLEFFESMGFKCPKRKGVADFLQ 434 (1444)
Q Consensus 406 ~G~~~~~~~~F~~~Gf~cp~~~~~adfl~ 434 (1444)
.|++.++. ..|.+.-+|.|+-
T Consensus 215 ~g~p~ely--------~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLELY--------ERPANLFVAGFIG 235 (338)
T ss_pred cCChHHHh--------hCccchhhhhhcC
Confidence 99999984 4566666666653
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=350.42 Aligned_cols=193 Identities=29% Similarity=0.442 Sum_probs=168.1
Q ss_pred eEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc------ccc-cceEEEEecCCCCC
Q 000524 872 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ------ETF-ARISGYCEQNDIHS 944 (1444)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~-~~~~gyv~q~~~~~ 944 (1444)
..+|++||+.|++||++||||||||||||||++|.|...+ .+|.|.++|.+... ..+ ++.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 5799999999999999999999999999999999998764 58999999976542 123 45799999999999
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccc-ccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000524 945 PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ-SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023 (1444)
Q Consensus 945 ~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLD 1023 (1444)
|++||+||+.....+.... ...+++.++++++.+||.+..+ .. +..|||||||||+|||||+.+|+||+.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 9999999999876554322 2255667899999999997666 44 4679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCc
Q 000524 1024 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 1024 EPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg 1076 (1444)
|||.+||+.++..|++.+++++++ |+|||++||+| ++...|||++.|++|+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCe
Confidence 999999999999999999999866 99999999997 5889999999999753
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=374.96 Aligned_cols=212 Identities=33% Similarity=0.469 Sum_probs=184.6
Q ss_pred cceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCC--CccceEEEEcCCCCCCCCC
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF--VPERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~l 241 (1444)
.+.+|+|||+.+++|++++|+||||||||||||+|+|.+.|+ +|+|.++|++.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 468999999999999999999999999999999999999997 99999999887653 3357899999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
||+|||.|.+++++.... ....+++++++.+||++.+++ .+
T Consensus 94 T~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~~~-----~~ 134 (293)
T COG1131 94 TVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKANK-----KV 134 (293)
T ss_pred cHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhhCc-----ch
Confidence 999999999988753210 012357889999999984444 45
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
++||+||||||+||.||+++|+++||||||+|||+.++.++.+.|+++++. ++++|+..+|...++..+||+|++|++|
T Consensus 135 ~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 579999999999999999999999999999999999999999999999864 4355555778889999999999999999
Q ss_pred eEEEecChhhHHHHHHh
Q 000524 402 QIVYQGPRELVLEFFES 418 (1444)
Q Consensus 402 ~iv~~G~~~~~~~~F~~ 418 (1444)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999988776543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=376.70 Aligned_cols=223 Identities=30% Similarity=0.426 Sum_probs=197.4
Q ss_pred cceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-cceEEEEcCCCCCCCCCC
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 242 (1444)
...+|+|+|+.|++||+++|+|||||||||||++|||...|+ +|+|.++|++++...+ +|.+++|+|+-.+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 467999999999999999999999999999999999999998 9999999999998877 478999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
|+||+.|+.+.++... ..+.+.+++++|+.++|++.++. .+.
T Consensus 94 V~~NVafGLk~~~~~~---------------------------------~~~i~~rv~e~L~lV~L~~~~~R-----~p~ 135 (352)
T COG3842 94 VEENVAFGLKVRKKLK---------------------------------KAEIKARVEEALELVGLEGFADR-----KPH 135 (352)
T ss_pred HHHHhhhhhhhcCCCC---------------------------------HHHHHHHHHHHHHHcCchhhhhh-----Chh
Confidence 9999999987442111 01234568889999999987764 455
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
.|||||||||++||||+.+|++||||||.|+||..-+.++..-|+++.+.. +++.|.++|+..|...++|+|++|++|+
T Consensus 136 qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 136 QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGR 214 (352)
T ss_pred hhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCc
Confidence 799999999999999999999999999999999999999999999987765 5666668999999999999999999999
Q ss_pred EEEecChhhHHHHHHhcCCCCCCCCChhHHHHhh
Q 000524 403 IVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436 (1444)
Q Consensus 403 iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v 436 (1444)
|...|+++++ |..|...-+|||+-+.
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999998 4578888888888654
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=356.12 Aligned_cols=222 Identities=28% Similarity=0.449 Sum_probs=187.7
Q ss_pred cceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCc---cCCCCCc-cceEEEEcCCCCCCC
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH---DMGEFVP-ERTAAYISQHDNHIG 239 (1444)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~---~~~~~~~-~~~~~yv~Q~d~~~~ 239 (1444)
...+++|||+.|+.||+++++|||||||||||++|+|+..|+ +|.|.+||. +.+.... .|.+|||+|+..+|+
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 456899999999999999999999999999999999999998 999999999 5555333 488999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000524 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1444)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1444)
.|||.|||.|+.+++.. .|+ ..+.+.+++++|+.+.|++.++ +
T Consensus 91 HmtVa~NIAFGl~~~~~-------------------~p~-------------~~~~r~rv~elL~lvqL~~la~-----r 133 (345)
T COG1118 91 HMTVADNIAFGLKVRKE-------------------RPS-------------EAEIRARVEELLRLVQLEGLAD-----R 133 (345)
T ss_pred cchHHhhhhhccccccc-------------------CCC-------------hhhHHHHHHHHHHHhcccchhh-----c
Confidence 99999999999876521 010 0123456788899999987766 5
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc
Q 000524 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1444)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1444)
.+.+|||||||||++||||+..|++|+||||+++||...+.++-+.|+++....+ .+.+.++|+..|+++++|+|++|+
T Consensus 134 yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~-~ttvfVTHD~eea~~ladrvvvl~ 212 (345)
T COG1118 134 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLG-VTTVFVTHDQEEALELADRVVVLN 212 (345)
T ss_pred CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhC-ceEEEEeCCHHHHHhhcceEEEec
Confidence 5678999999999999999999999999999999999999999999999765444 555558999999999999999999
Q ss_pred CCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHH
Q 000524 400 DGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQ 434 (1444)
Q Consensus 400 ~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~ 434 (1444)
+|+|...||++++.+ -|...-+..|+-
T Consensus 213 ~G~Ieqvg~p~ev~~--------~P~s~fV~~f~G 239 (345)
T COG1118 213 QGRIEQVGPPDEVYD--------HPASRFVARFLG 239 (345)
T ss_pred CCeeeeeCCHHHHhc--------CCCccceecccc
Confidence 999999999999843 454444445543
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=345.02 Aligned_cols=213 Identities=25% Similarity=0.360 Sum_probs=189.5
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
++|+||+..+. .+.+++|+|++|++||+++++|||||||||+|++|.+...+ .+|+|++||.++.
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecc
Confidence 56788876653 45799999999999999999999999999999999998764 5899999999876
Q ss_pred c---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCcCCH
Q 000524 927 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP--LIQSLVGLPGVSGLST 1001 (1444)
Q Consensus 927 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~lSg 1001 (1444)
. ...||.+|||-|+-.+||++||.||+.+.-.+. ..+++..+++++|+|+.+||++ +.+.. +..|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 5 357889999999999999999999998765554 4567888889999999999985 66665 578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEE
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1080 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y 1080 (1444)
||+||+.+||||+++|+||+||||.+.||+.++..+++-++++.++ |+|||++||+.. |.+.+.|||.+|+. |+++-
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~-G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDA-GEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecC-CeEEE
Confidence 9999999999999999999999999999999999999999999766 999999999986 79999999999985 89888
Q ss_pred EcCC
Q 000524 1081 VGPL 1084 (1444)
Q Consensus 1081 ~G~~ 1084 (1444)
++++
T Consensus 217 ~~~P 220 (309)
T COG1125 217 YDTP 220 (309)
T ss_pred eCCH
Confidence 8875
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=343.53 Aligned_cols=220 Identities=26% Similarity=0.329 Sum_probs=186.2
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.++++|++-.++ +++++|+|||+.|++||++||+|+|||||||||++|.|... +.+|+|.++|.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 477888876664 35689999999999999999999999999999999999655 4589999999764
Q ss_pred Cc------ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000524 926 KQ------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-----PEVDSETRKMFIEEVMELVELKPLIQSLVGLP 994 (1444)
Q Consensus 926 ~~------~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 994 (1444)
.. +.+++.+||++|+..+.+.++|.+|+..+..-+.+ -....++.+..+-++|+.+|+.+.+-+..
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh---
Confidence 32 24678899999999999999999999876322211 12233444556788999999999888774
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEe
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMK 1073 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~ 1073 (1444)
..|||||+|||+|||+|+.+|+|++.|||+++||+.+++.||+.|++++++ |.|||++.||... ..+.|||++=|+
T Consensus 146 --~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 146 --STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred --ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 479999999999999999999999999999999999999999999999755 9999999999753 667899999998
Q ss_pred cCcEEEEEcCCCc
Q 000524 1074 RGGQEIYVGPLGR 1086 (1444)
Q Consensus 1074 ~gg~~~y~G~~~~ 1086 (1444)
. |+++|.||..+
T Consensus 223 ~-G~ivfDg~~~e 234 (258)
T COG3638 223 A-GRIVFDGPASE 234 (258)
T ss_pred C-CcEEEeCChhh
Confidence 5 89999999854
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=336.15 Aligned_cols=201 Identities=27% Similarity=0.388 Sum_probs=184.1
Q ss_pred eEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc--ccccceEEEEecCCCCCCCCcH
Q 000524 872 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVTV 949 (1444)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~~lTv 949 (1444)
.++++||||+++.||++||+|+|||||||+|++|++...+ .+|.|++||.+... ...++.+|.++.+..++..+|+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 3489999999999999999999999999999999998764 48999999998643 3568889999988888999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000524 950 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1444)
Q Consensus 950 ~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgL 1029 (1444)
+|||.|.+.+. +....+.+++++++.+.++|.++.|+.+| ++|.|+||||+|||||+++|++++||||||||
T Consensus 93 rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 93 RENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 99999999886 34566777889999999999999999976 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1030 DARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1030 D~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
|..+...+.+.++++.+.|++||+++|..+ |+..+||++++|++ |++++.|..
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~ 217 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSI 217 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCH
Confidence 999999999999999888999999999986 79889999999996 899999986
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=342.56 Aligned_cols=211 Identities=25% Similarity=0.358 Sum_probs=180.3
Q ss_pred ccceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc------cceEEEEcCCCC
Q 000524 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDN 236 (1444)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~ 236 (1444)
..+.|++|||+.|++||+++|+|||||||||||++|.|+++|+ +|+|.++|+++..... ++++|+++|+-.
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 3467999999999999999999999999999999999999998 9999999999876543 467999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccc
Q 000524 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1444)
+|..+||+||+.|..+-... +|. ...+..+..-|+..||... +
T Consensus 96 LFssltV~eNVafplre~~~-------------------lp~--------------~~i~~lv~~KL~~VGL~~~----~ 138 (263)
T COG1127 96 LFSSLTVFENVAFPLREHTK-------------------LPE--------------SLIRELVLMKLELVGLRGA----A 138 (263)
T ss_pred cccccchhHhhheehHhhcc-------------------CCH--------------HHHHHHHHHHHHhcCCChh----h
Confidence 99999999999997653211 111 0122334455788899754 3
Q ss_pred cCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEE
Q 000524 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1444)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1444)
.+.++..||||+|||+++|||++.+|+++|+||||+||||.++..+.+.|+++.+..+ .|++.++|+.++++..+|+|+
T Consensus 139 ~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg-~T~i~VTHDl~s~~~i~Drv~ 217 (263)
T COG1127 139 ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALG-LTVIMVTHDLDSLLTIADRVA 217 (263)
T ss_pred hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhC-CEEEEEECChHHHHhhhceEE
Confidence 3567788999999999999999999999999999999999999999999999887655 455558899999999999999
Q ss_pred EEcCCeEEEecChhhHHH
Q 000524 397 LLSDGQIVYQGPRELVLE 414 (1444)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1444)
+|.+|+|++.|+++++.+
T Consensus 218 ~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 218 VLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEeCCEEEEeCCHHHHHh
Confidence 999999999999999864
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=359.09 Aligned_cols=211 Identities=34% Similarity=0.461 Sum_probs=180.4
Q ss_pred cceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCcc---ceEEEEcCCCCCCCC
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGE 240 (1444)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~ 240 (1444)
++.||+|+|+.+++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.++..+ |.+|||||.....+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 357999999999999999999999999999999999999998 99999999999877653 789999999988889
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
+||+|.+.++..-.. + . .... ..+....++..|+.+|+.+.++..+.
T Consensus 91 ~tV~d~V~~GR~p~~-~-~----------------~~~~------------~~~D~~~v~~aL~~~~~~~la~r~~~--- 137 (258)
T COG1120 91 LTVYELVLLGRYPHL-G-L----------------FGRP------------SKEDEEIVEEALELLGLEHLADRPVD--- 137 (258)
T ss_pred cEEeehHhhcCCccc-c-c----------------ccCC------------CHhHHHHHHHHHHHhCcHHHhcCccc---
Confidence 999999998743110 0 0 0000 00112357788999999999987664
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
.|||||||||.|||||+++|++|+||||||+||...+.++++.+++++++.+ .+||.++|+...+..+||++++|++
T Consensus 138 --~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~-~tvv~vlHDlN~A~ryad~~i~lk~ 214 (258)
T COG1120 138 --ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG-LTVVMVLHDLNLAARYADHLILLKD 214 (258)
T ss_pred --ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999987554 4455577889999999999999999
Q ss_pred CeEEEecChhhHH
Q 000524 401 GQIVYQGPRELVL 413 (1444)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1444)
|+++.+|++++++
T Consensus 215 G~i~a~G~p~evl 227 (258)
T COG1120 215 GKIVAQGTPEEVL 227 (258)
T ss_pred CeEEeecCcchhc
Confidence 9999999998775
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=346.14 Aligned_cols=192 Identities=26% Similarity=0.377 Sum_probs=169.7
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1444)
..+|+|+|+.|.+||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++. .+...++||+|++.++|=+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 56999999999999999999999999999999999999998 999999999883 4667899999999999999999
Q ss_pred HHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccccc
Q 000524 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1444)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1444)
||+.|+.+..+... .+...+++.+|+.+||.+..|. .+++|
T Consensus 91 ~NV~l~l~~~~~~~----------------------------------~e~~~~a~~~L~~VgL~~~~~~-----~P~qL 131 (248)
T COG1116 91 DNVALGLELRGKSK----------------------------------AEARERAKELLELVGLAGFEDK-----YPHQL 131 (248)
T ss_pred hhheehhhccccch----------------------------------HhHHHHHHHHHHHcCCcchhhc-----Ccccc
Confidence 99999987654211 0122357888999999988874 45689
Q ss_pred chhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.++.+ .+|+.++|+.+|+..++|+|++|+++
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~-~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETR-KTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhC-CEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999999988877554 55666899999999999999999984
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=347.50 Aligned_cols=207 Identities=28% Similarity=0.433 Sum_probs=174.9
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCccceEEEEcCCC---CCCCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHD---NHIGEMT 242 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d---~~~~~lT 242 (1444)
++|+|||+.+++|++++|+||||||||||+|+|+|.++|. +|+|.++|.+..+...+.++|||||.. .-|| +|
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~t 93 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-IT 93 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCC-cC
Confidence 4999999999999999999999999999999999999998 999999999887776678999999953 3344 79
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
|+|.+..+.--+. + ...... .+.+..+++.|+.+|+.+.+|..+|
T Consensus 94 V~d~V~~g~~~~~-g----~~~~~~-------------------------~~d~~~v~~aL~~Vgm~~~~~r~i~----- 138 (254)
T COG1121 94 VKDVVLLGRYGKK-G----WFRRLN-------------------------KKDKEKVDEALERVGMEDLRDRQIG----- 138 (254)
T ss_pred HHHHHHccCcccc-c----cccccc-------------------------HHHHHHHHHHHHHcCchhhhCCccc-----
Confidence 9999998732111 0 000000 1113457889999999999998887
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
.|||||+|||-|||||+++|++|+|||||+|+|+.++..|++.|+++.+. +.+|+.++|+...+.+.||+|+.|+ ++
T Consensus 139 ~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln-~~ 215 (254)
T COG1121 139 ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLN-RH 215 (254)
T ss_pred ccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEc-Ce
Confidence 49999999999999999999999999999999999999999999999764 5556668999999999999999995 57
Q ss_pred EEEecChhhHHH
Q 000524 403 IVYQGPRELVLE 414 (1444)
Q Consensus 403 iv~~G~~~~~~~ 414 (1444)
+++.|+++++.+
T Consensus 216 ~~~~G~~~~~~~ 227 (254)
T COG1121 216 LIASGPPEEVLT 227 (254)
T ss_pred eEeccChhhccC
Confidence 889999988753
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=329.21 Aligned_cols=207 Identities=31% Similarity=0.368 Sum_probs=183.0
Q ss_pred cceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC--ccceEEEEcCCCCCCCCC
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 241 (1444)
..++++||||.++.||+++|+|||||||||+|++|++++.|+ +|+|+++|.+..+.. .++.+|.++.+..++..|
T Consensus 14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~Rl 90 (245)
T COG4555 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARL 90 (245)
T ss_pred HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhh
Confidence 345899999999999999999999999999999999999998 999999999875432 368899999888899999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
|++|||.|.+++.+.. + .+.+.+++.+.+.|+|.+|.|+.+|
T Consensus 91 T~rEnl~~Fa~L~~l~----------~------------------------~~~kari~~l~k~l~l~~~~~rRv~---- 132 (245)
T COG4555 91 TARENLKYFARLNGLS----------R------------------------KEIKARIAELSKRLQLLEYLDRRVG---- 132 (245)
T ss_pred hHHHHHHHHHHHhhhh----------h------------------------hHHHHHHHHHHHHhChHHHHHHHHh----
Confidence 9999999998876431 1 1234567889999999999999998
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
++|-|+||||+|||||+.+|++++|||||||||..+...+.+.++++.. .+.+|+..+|..+|+..+||+|++|.+|
T Consensus 133 -~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~--egr~viFSSH~m~EvealCDrvivlh~G 209 (245)
T COG4555 133 -EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALCDRVIVLHKG 209 (245)
T ss_pred -hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc--CCcEEEEecccHHHHHHhhheEEEEecC
Confidence 5999999999999999999999999999999999999999999998743 3556666789999999999999999999
Q ss_pred eEEEecChhhHHH
Q 000524 402 QIVYQGPRELVLE 414 (1444)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1444)
++|+.|+.+++..
T Consensus 210 evv~~gs~~~l~~ 222 (245)
T COG4555 210 EVVLEGSIEALDA 222 (245)
T ss_pred cEEEcCCHHHHHH
Confidence 9999999987754
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=348.12 Aligned_cols=205 Identities=28% Similarity=0.442 Sum_probs=185.3
Q ss_pred ceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCc---cCCc-ccccceEEEEecCCCCCCC
Q 000524 871 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY---PKKQ-ETFARISGYCEQNDIHSPF 946 (1444)
Q Consensus 871 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~gyv~q~~~~~~~ 946 (1444)
...+++|||+.|+.||++||+|||||||||||++|||..++ ..|.|.+||. +.++ ....|.+|||+|+..+|++
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 45689999999999999999999999999999999998774 4899999998 5444 3346789999999999999
Q ss_pred CcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000524 947 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1026 (1444)
Q Consensus 947 lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPT 1026 (1444)
|||.+|+.|+.+++ ...++....+.+|+++|+.+.|++..+.. +..||||||||+++||||+..|++|+||||.
T Consensus 92 mtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 92 MTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred chHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 99999999998877 33455667788899999999999998887 5689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCCC
Q 000524 1027 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1085 (1444)
Q Consensus 1027 sgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~~ 1085 (1444)
++||+.-+..+.+.|+++.++ |.|+|++||++. |+++.+|||++|++ |++.-.||..
T Consensus 166 ~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 999999999999999999876 999999999996 89999999999996 7999999873
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=323.50 Aligned_cols=213 Identities=25% Similarity=0.333 Sum_probs=183.6
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.|+||+..|.. ...+|+||||+|++||++-|+||||||||||||+|.+... +..|+|.++|+++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 568888766642 2569999999999999999999999999999999999765 34899999999864
Q ss_pred cc------cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000524 927 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000 (1444)
Q Consensus 927 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1000 (1444)
.. ..+|.+|+|+||..+.+..||+||+.|...... .+..+.+++|.++|+.+||.+.++.+ +..||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 31 257899999999999999999999999876653 34556677899999999999998887 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhc-ceEEEEecCcEEE
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAF-DELFLMKRGGQEI 1079 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~f-D~v~ll~~gg~~~ 1079 (1444)
|||+||++||||++.+|++|+.||||.+||+..+..||+++.++.+.|.|||+.||+- ++.+.. -|++.|.+ |+++
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~--~lv~~~~~rvl~l~~-Grl~ 216 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL--ELVNRMRHRVLALED-GRLV 216 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH--HHHHhccCcEEEEeC-CEEE
Confidence 9999999999999999999999999999999999999999999998899999999995 556554 57888885 7887
Q ss_pred EEcCC
Q 000524 1080 YVGPL 1084 (1444)
Q Consensus 1080 y~G~~ 1084 (1444)
.....
T Consensus 217 ~d~~~ 221 (223)
T COG2884 217 RDESR 221 (223)
T ss_pred ecccc
Confidence 76543
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=336.26 Aligned_cols=217 Identities=25% Similarity=0.358 Sum_probs=181.2
Q ss_pred ccceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc------cceEEEEcCCCC
Q 000524 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDN 236 (1444)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~ 236 (1444)
..+++|+|||+.|++||+++|+|||||||||||++|.|..+|+ +|+|.+||.++..... ++.+||++|+..
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence 3467999999999999999999999999999999999999998 9999999988765532 468999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccc
Q 000524 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1444)
+.+.+||.+|+..+..-+. +.+.. -.+..+.. .+..+-+.|+.+|+.+.+.++.
T Consensus 92 Lv~r~sv~~NVl~grl~~~--s~~~s---------lfglfsk~---------------dk~~Al~aLervgi~~~A~qra 145 (258)
T COG3638 92 LVPRLSVLENVLLGRLGYT--STWRS---------LFGLFSKE---------------DKAQALDALERVGILDKAYQRA 145 (258)
T ss_pred cccccHHHHHHHhhhcccc--hHHHH---------HhCCCCHH---------------HHHHHHHHHHHcCcHHHHHHHh
Confidence 9999999999998753221 11111 11111111 1223456789999999988877
Q ss_pred cCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEE
Q 000524 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1444)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1444)
+ .|||||+|||+|||||+.+|+++|-|||+++||+.++.++++.|++++...+.|+|+.+ |..+-+.++||||+
T Consensus 146 ~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nL-H~vdlA~~Y~~Rii 219 (258)
T COG3638 146 S-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNL-HQVDLAKKYADRII 219 (258)
T ss_pred c-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEe-chHHHHHHHHhhhe
Confidence 6 59999999999999999999999999999999999999999999999987777777755 55778899999999
Q ss_pred EEcCCeEEEecChhhHHH
Q 000524 397 LLSDGQIVYQGPRELVLE 414 (1444)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1444)
-|++|+|+|.||++++-+
T Consensus 220 gl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 220 GLKAGRIVFDGPASELTD 237 (258)
T ss_pred EecCCcEEEeCChhhhhH
Confidence 999999999999988754
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=330.99 Aligned_cols=222 Identities=25% Similarity=0.396 Sum_probs=179.0
Q ss_pred cceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCeecEEEECCccCCCC-----CccceEEEEcCCCC
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEF-----VPERTAAYISQHDN 236 (1444)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~ 236 (1444)
++++|+|||+.|+++++||++|||||||||||++|....+ |..+++|+|.++|+++-+. ..|+++|.|+|.|.
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 3569999999999999999999999999999999998754 4568899999999998653 23689999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcc-ccccc
Q 000524 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV-CADTM 315 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (1444)
-|| +|++||+.|+.|++|... +.+.+ +++.-|+.-+|-+ ..|.+
T Consensus 99 PFp-~SIydNVayG~r~~g~~~--~~lde--------------------------------iVe~sLk~AaLWdEVKDrL 143 (253)
T COG1117 99 PFP-MSIYDNVAYGLRLHGIKD--KELDE--------------------------------IVESSLKKAALWDEVKDRL 143 (253)
T ss_pred CCC-chHHHHHHHhHHhhccch--HHHHH--------------------------------HHHHHHHHhHhHHHhHHHh
Confidence 999 999999999999887543 11111 1222222222221 11211
Q ss_pred ccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeE
Q 000524 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1444)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1444)
++...+|||||+||++|||||+-+|+|||||||||+|||.++..|-+.+.++.+ .-+|+.++|.+.++.+..|+.
T Consensus 144 --~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~t 218 (253)
T COG1117 144 --HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDYT 218 (253)
T ss_pred --hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhh
Confidence 122347999999999999999999999999999999999999999999999853 455666889999999999999
Q ss_pred EEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHH
Q 000524 396 ILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1444)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl 433 (1444)
..+..|++|++|+.+++ |..|.++...||+
T Consensus 219 aFf~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 219 AFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 99999999999999987 4567776666665
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=341.21 Aligned_cols=197 Identities=28% Similarity=0.420 Sum_probs=167.3
Q ss_pred cceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-------cceEEEEcCCCC
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDN 236 (1444)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1444)
..++|+++|+.|++||+++|+|||||||||||++|+|...|+ +|.|.++|.++..... ++.+|||+|+..
T Consensus 17 ~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n 93 (226)
T COG1136 17 KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN 93 (226)
T ss_pred ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC
Confidence 368999999999999999999999999999999999999998 9999999998876542 357999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccc
Q 000524 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1444)
++|++||+||+.+++.+.+.... +.+...+.+++.+||++..+
T Consensus 94 Ll~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~--- 136 (226)
T COG1136 94 LLPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLL--- 136 (226)
T ss_pred CCCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhc---
Confidence 99999999999998766543210 11234577899999997655
Q ss_pred cCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEE
Q 000524 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1444)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1444)
+..+..|||||||||+|||||+.+|++++.||||.+||+.++..|++.++++++..+.|+|+ ++|+ +++...|||++
T Consensus 137 -~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~-VTHd-~~lA~~~dr~i 213 (226)
T COG1136 137 -KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIM-VTHD-PELAKYADRVI 213 (226)
T ss_pred -cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEE-EcCC-HHHHHhCCEEE
Confidence 12345799999999999999999999999999999999999999999999998754445444 6665 46788999999
Q ss_pred EEcCCeE
Q 000524 397 LLSDGQI 403 (1444)
Q Consensus 397 lL~~G~i 403 (1444)
.|.+|++
T Consensus 214 ~l~dG~~ 220 (226)
T COG1136 214 ELKDGKI 220 (226)
T ss_pred EEeCCee
Confidence 9999984
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=363.32 Aligned_cols=214 Identities=28% Similarity=0.409 Sum_probs=187.3
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.++|++..+. ++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEec
Confidence 588899987763 24699999999999999999999999999999999998653 489999999986
Q ss_pred Cc--ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000524 926 KQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 1003 (1444)
Q Consensus 926 ~~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGq 1003 (1444)
.. ...++.+|||+|++.+++.+||+|++.|.+.++. .+..+..+.++++++.++|.+..++.+ +.|||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHH
Confidence 43 2346789999999999999999999998766542 233344456889999999998888875 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcC
Q 000524 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083 (1444)
Q Consensus 1004 rkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~ 1083 (1444)
|||++||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~ 221 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999986 68889999999986 79999998
Q ss_pred C
Q 000524 1084 L 1084 (1444)
Q Consensus 1084 ~ 1084 (1444)
.
T Consensus 222 ~ 222 (306)
T PRK13537 222 P 222 (306)
T ss_pred H
Confidence 6
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=328.21 Aligned_cols=217 Identities=23% Similarity=0.314 Sum_probs=187.4
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCC---CCceEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~---~~~~~~G~i~i~g 922 (1444)
.++.+|++..|. .+++|+|||+.|+++++||++|||||||||||++|.+.. .+-.++|+|.++|
T Consensus 7 ~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 477888887774 457999999999999999999999999999999998743 3346899999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSLVGLPGV 996 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~ 996 (1444)
.++-. ..+|+.+|.|+|.+.-|| +|++||+.|+.++..-.+ ++.++.|++.|+...|++- .|.+ ... .
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL-~~s-a 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRL-HKS-A 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHh-hCC-c
Confidence 87543 246889999999999999 999999999987765433 6677889999999999874 4444 222 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCc
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg 1076 (1444)
.+|||||+|||||||+|+-+|+||+||||||+|||.+...|-+++.++. +.-|||++||.+. ...+..|+..++.. |
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G 224 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-G 224 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-c
Confidence 5799999999999999999999999999999999999999999999997 4689999999986 57788899999986 7
Q ss_pred EEEEEcCC
Q 000524 1077 QEIYVGPL 1084 (1444)
Q Consensus 1077 ~~~y~G~~ 1084 (1444)
++|.+|++
T Consensus 225 ~LvE~g~T 232 (253)
T COG1117 225 ELVEFGPT 232 (253)
T ss_pred EEEEEcCH
Confidence 99999997
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=360.57 Aligned_cols=214 Identities=27% Similarity=0.397 Sum_probs=191.9
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.++++|++.++. +..+|+|||++|++||.++|+|||||||||||++|||... +.+|+|.|+|.+.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 467788876663 2229999999999999999999999999999999999876 4589999999987
Q ss_pred Cc-ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000524 926 KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 1004 (1444)
Q Consensus 926 ~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1004 (1444)
+. ...+|.+++|+|+..++|++||+||+.|+.+++. .++++.+++|.++.+.++|++..|.+ ++.||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 76 3456889999999999999999999999987763 45677788899999999999999988 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcC
Q 000524 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083 (1444)
Q Consensus 1005 kRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~ 1083 (1444)
|||+|||||+++|++++||||.|+||+..+..+...|+++.++ |.|+|.+||+.. |.+.++||+.+|+ .|++.-.|.
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999998765 899999999984 8999999999999 589999998
Q ss_pred C
Q 000524 1084 L 1084 (1444)
Q Consensus 1084 ~ 1084 (1444)
+
T Consensus 218 p 218 (338)
T COG3839 218 P 218 (338)
T ss_pred h
Confidence 6
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=362.44 Aligned_cols=206 Identities=23% Similarity=0.326 Sum_probs=177.5
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc------cceEEEEcCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1444)
+++|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++....+ ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999998 9999999999876532 45799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+.+||+||+.|+.+..+... .+...++.++++.+||++..|..+
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~v~e~l~~vgL~~~~~~~~-- 138 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------------------------------DEIKRKVTELLALVGLGDKHDSYP-- 138 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999998765432110 011234677899999998777554
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
+.|||||||||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+..+. +|+.++|..+.+.++||+|++|
T Consensus 139 ---~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~-tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 139 ---SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL-TILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHhCCEEEEE
Confidence 479999999999999999999999999999999999999999999998764444 4555788899999999999999
Q ss_pred cCCeEEEecChhhHH
Q 000524 399 SDGQIVYQGPRELVL 413 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1444)
++|++++.|+.+++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=376.41 Aligned_cols=213 Identities=23% Similarity=0.438 Sum_probs=176.9
Q ss_pred CCccccceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCC
Q 000524 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHD 235 (1444)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d 235 (1444)
|.| ++.+||+|+|++|+|||.+||+|||||||||+.++|...++|+ +|+|.+||+|+.++++ ++.+|+|.|+|
T Consensus 476 P~R-p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEP 551 (716)
T KOG0058|consen 476 PTR-PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEP 551 (716)
T ss_pred CCC-CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccc
Confidence 444 4577999999999999999999999999999999999999998 9999999999998876 58999999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccc
Q 000524 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTM 315 (1444)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1444)
.+|.. ||+|||.|+.. . .+.|+.+.|+.... . .|. +.++++.+||.
T Consensus 552 vLFs~-sI~eNI~YG~~--~-----------------------~t~e~i~~AAk~AN-a----h~F---I~~~p~gY~T~ 597 (716)
T KOG0058|consen 552 VLFSG-SIRENIAYGLD--N-----------------------ATDEEIEAAAKMAN-A----HEF---ITNFPDGYNTV 597 (716)
T ss_pred eeecc-cHHHHHhcCCC--C-----------------------CCHHHHHHHHHHhC-h----HHH---HHhCccccccc
Confidence 98875 99999999753 1 11111222221111 1 122 34689999999
Q ss_pred ccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeE
Q 000524 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1444)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1444)
||+++. .||||||||++|||||+++|+||||||.||+||+++...+.+.|.+..+ ++|+++ |.|. -.+.+.+|+|
T Consensus 598 VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlv-IAHR-LSTV~~Ad~I 672 (716)
T KOG0058|consen 598 VGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLV-IAHR-LSTVRHADQI 672 (716)
T ss_pred cCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEE-Eehh-hhHhhhccEE
Confidence 998876 6999999999999999999999999999999999999999999988653 355555 5554 4578889999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 000524 396 ILLSDGQIVYQGPRELVLE 414 (1444)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1444)
+++++|++++.|+++|+++
T Consensus 673 vvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 673 VVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEEcCCeEEecccHHHHhh
Confidence 9999999999999999975
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=360.35 Aligned_cols=217 Identities=23% Similarity=0.293 Sum_probs=186.3
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
++++|+++.++.. ...+.+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 5788888777421 0124699999999999999999999999999999999998763 4899999998764
Q ss_pred cc------cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000524 927 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000 (1444)
Q Consensus 927 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1000 (1444)
.. ..++.+||++|+..+++..||+||+.|....+ ..+.++.++++.++++.+||.+..|.. +..||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~-----~~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSY-----PSNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 31 23567999999999999999999999876543 134455566789999999999888876 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEE
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1079 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~ 1079 (1444)
||||||++|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||+++|+++ .+.+.||++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999865 999999999986 57788999999985 8999
Q ss_pred EEcCC
Q 000524 1080 YVGPL 1084 (1444)
Q Consensus 1080 y~G~~ 1084 (1444)
..|+.
T Consensus 221 ~~g~~ 225 (343)
T TIGR02314 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99985
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=358.51 Aligned_cols=215 Identities=27% Similarity=0.385 Sum_probs=192.3
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.++++|++-++. ...+|+|||++|++||+++|+|||||||||||++|||...+ .+|+|.++|.++
T Consensus 5 ~l~i~~v~k~yg-------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p--~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSFG-------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP--SSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeecC-------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 578888876653 46799999999999999999999999999999999998764 489999999987
Q ss_pred Ccc-cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000524 926 KQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 1004 (1444)
Q Consensus 926 ~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1004 (1444)
... ..+|.+|+|+|+-.+||+|||+||+.|+.+++ ....+++.+++|+++++.++|.+..+.. +..|||||+
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHH
Confidence 663 35788999999999999999999999997644 3345566788899999999999998887 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcC
Q 000524 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083 (1444)
Q Consensus 1005 kRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~ 1083 (1444)
|||++||||+.+|++|+||||-|+||..-+..++.-|+++.++ |.|.|++|||.. |...+.|||.+|++ |++.-.|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCC
Confidence 9999999999999999999999999999999999999998765 999999999986 78999999999986 89998888
Q ss_pred C
Q 000524 1084 L 1084 (1444)
Q Consensus 1084 ~ 1084 (1444)
+
T Consensus 221 P 221 (352)
T COG3842 221 P 221 (352)
T ss_pred H
Confidence 6
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=345.63 Aligned_cols=213 Identities=24% Similarity=0.348 Sum_probs=180.6
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccc
Confidence 5677777663 24699999999999999999999999999999999998653 48999999987543
Q ss_pred ------ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000524 928 ------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 1001 (1444)
Q Consensus 928 ------~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1001 (1444)
..+++.++|++|++.+++.+||+|++.+...... ....++..+.++++++.++|.+..++.+ ..|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 1245679999999999999999999988643321 1233444566889999999988776654 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEE
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1080 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y 1080 (1444)
|||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.||++++|++ |++++
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~ 217 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVA 217 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999874 899999999986 57788999999986 79999
Q ss_pred EcCC
Q 000524 1081 VGPL 1084 (1444)
Q Consensus 1081 ~G~~ 1084 (1444)
.|+.
T Consensus 218 ~g~~ 221 (235)
T cd03261 218 EGTP 221 (235)
T ss_pred ecCH
Confidence 9875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=363.90 Aligned_cols=206 Identities=25% Similarity=0.364 Sum_probs=178.7
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1444)
+.+|+|+|+.+++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++....+ ++.++||+|++.++|++||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 45999999999999999999999999999999999999997 9999999999876544 4789999999999999999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1444)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1444)
+||+.|+.+.++... .+...+++++++.+||++..+..+ +.
T Consensus 94 ~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 134 (356)
T PRK11650 94 RENMAYGLKIRGMPK----------------------------------AEIEERVAEAARILELEPLLDRKP-----RE 134 (356)
T ss_pred HHHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCCh-----hh
Confidence 999999865432100 011234678899999988777554 47
Q ss_pred cchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000524 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1444)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1444)
|||||||||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRL-KTTSLYVTHDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999886533 45566688888999999999999999999
Q ss_pred EEecChhhHH
Q 000524 404 VYQGPRELVL 413 (1444)
Q Consensus 404 v~~G~~~~~~ 413 (1444)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (356)
T PRK11650 214 EQIGTPVEVY 223 (356)
T ss_pred EEECCHHHHH
Confidence 9999998874
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=360.66 Aligned_cols=214 Identities=25% Similarity=0.359 Sum_probs=188.3
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.++++|++..+. .+.+|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 378889887763 2468999999999999999999999999999999999865 3589999999876
Q ss_pred Cc-ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000524 926 KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 1004 (1444)
Q Consensus 926 ~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1004 (1444)
.. ...+|.+|||+|+..++|.+||+||+.|+...+ ..+..+.++.++++++.++|.+..+.. +..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHH
Confidence 43 224577999999999999999999999986543 234455667899999999999988876 467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcC
Q 000524 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083 (1444)
Q Consensus 1005 kRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~ 1083 (1444)
|||+|||||+.+|++|+|||||++||..++..+.+.|+++.++ |.|+|+++|++. ++..++|++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999996 78999999999996 79999998
Q ss_pred C
Q 000524 1084 L 1084 (1444)
Q Consensus 1084 ~ 1084 (1444)
.
T Consensus 219 ~ 219 (353)
T TIGR03265 219 P 219 (353)
T ss_pred H
Confidence 6
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=361.12 Aligned_cols=214 Identities=25% Similarity=0.358 Sum_probs=186.8
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|++..++ +.+.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++.
T Consensus 4 l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~ 69 (356)
T PRK11650 4 LKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRVVN 69 (356)
T ss_pred EEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEECC
Confidence 67888887762 124699999999999999999999999999999999998663 5899999998764
Q ss_pred cc-cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000524 927 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 1005 (1444)
Q Consensus 927 ~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1005 (1444)
.. ..++.+|||+|+..++|++||+||+.|....+ ..+..+.++.++++++.++|.+..+..+ ..|||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~Q 141 (356)
T PRK11650 70 ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQ 141 (356)
T ss_pred CCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHH
Confidence 32 23477999999999999999999999986543 2344555667899999999998888764 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1006 Rl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++.+++|++++|++ |+++..|+.
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~~ 219 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGTP 219 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999999999999999999999999998765 899999999986 78999999999985 899999986
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=361.52 Aligned_cols=206 Identities=22% Similarity=0.361 Sum_probs=179.0
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1444)
..+|+|+|+.+++||+++|+|||||||||||++|+|..+|+ +|+|.++|.++....+ ++.++||+|+..++|++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 45899999999999999999999999999999999999998 9999999999876555 3789999999999999999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1444)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1444)
+||+.|+.+.++... .+.+.+++++++.+||.+..+.. ++.
T Consensus 96 ~eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gl~~~~~r~-----~~~ 136 (351)
T PRK11432 96 GENVGYGLKMLGVPK----------------------------------EERKQRVKEALELVDLAGFEDRY-----VDQ 136 (351)
T ss_pred HHHHHHHHhHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCC-----hhh
Confidence 999999875432110 01223567889999998776654 457
Q ss_pred cchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000524 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1444)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1444)
|||||||||+|||||+.+|++|+||||+++||+.++.++.+.|+++.+..+ ++++.++|+..++.+++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFN-ITSLYVTHDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998865434 4556688899999999999999999999
Q ss_pred EEecChhhHH
Q 000524 404 VYQGPRELVL 413 (1444)
Q Consensus 404 v~~G~~~~~~ 413 (1444)
+..|+++++.
T Consensus 216 ~~~g~~~~~~ 225 (351)
T PRK11432 216 MQIGSPQELY 225 (351)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=361.94 Aligned_cols=207 Identities=26% Similarity=0.397 Sum_probs=179.1
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1444)
+.+|+|+|+.+++|++++|+|||||||||||++|+|..+|+ +|+|.++|+++....+ +|.++||+|+..+||.+||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 45899999999999999999999999999999999999998 9999999998876544 4789999999999999999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1444)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1444)
+||+.|+.+.++... .+...+++++++.+||++..|..+ +.
T Consensus 94 ~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~L~~~~~~~~-----~~ 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMGR----------------------------------AEVAERVAELLDLVGLPGSERKYP-----GQ 134 (353)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCCchhhCCh-----hh
Confidence 999999865432110 011235678899999998877554 57
Q ss_pred cchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000524 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1444)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1444)
|||||||||+|||||+.+|+++|||||+++||..++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-~~tvi~vTHd~~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRL-GVTTIMVTHDQEEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999886543 45555578888999999999999999999
Q ss_pred EEecChhhHHH
Q 000524 404 VYQGPRELVLE 414 (1444)
Q Consensus 404 v~~G~~~~~~~ 414 (1444)
++.|+++++.+
T Consensus 214 ~~~g~~~~~~~ 224 (353)
T TIGR03265 214 EQVGTPQEIYR 224 (353)
T ss_pred EEEcCHHHHHh
Confidence 99999988753
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=327.29 Aligned_cols=206 Identities=27% Similarity=0.320 Sum_probs=177.2
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC----ccceEEEEcCCC--CCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV----PERTAAYISQHD--NHI 238 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d--~~~ 238 (1444)
.++|+|||+.+.+||..+|+|+||||||||.++|+|..+|+ +|+|.++|.+..... ..+.+.+|+||+ .+-
T Consensus 20 ~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLn 96 (252)
T COG1124 20 FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLN 96 (252)
T ss_pred hhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccC
Confidence 36999999999999999999999999999999999999998 999999998776543 346789999997 578
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
|..||++.|.-+.+..+.+. ...++.++|+.+||+...- +
T Consensus 97 P~~tv~~~l~Epl~~~~~~~------------------------------------~~~~i~~~L~~VgL~~~~l----~ 136 (252)
T COG1124 97 PRRTVGRILSEPLRPHGLSK------------------------------------SQQRIAELLDQVGLPPSFL----D 136 (252)
T ss_pred cchhHHHHHhhhhccCCccH------------------------------------HHHHHHHHHHHcCCCHHHH----h
Confidence 89999999987665432211 1122567899999986433 3
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
+.+..|||||||||+|||||..+|++|++|||||+||++...+|++.|.++.+. .+.+++.++|+..-+..+||||++|
T Consensus 137 R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~-~~lt~l~IsHdl~~v~~~cdRi~Vm 215 (252)
T COG1124 137 RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE-RGLTYLFISHDLALVEHMCDRIAVM 215 (252)
T ss_pred cCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh-cCceEEEEeCcHHHHHHHhhheeee
Confidence 556789999999999999999999999999999999999999999999998764 4566777999999999999999999
Q ss_pred cCCeEEEecChhhHHH
Q 000524 399 SDGQIVYQGPRELVLE 414 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1444)
++|++++.++.+++.+
T Consensus 216 ~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 216 DNGQIVEIGPTEELLS 231 (252)
T ss_pred eCCeEEEeechhhhhc
Confidence 9999999999998864
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=355.76 Aligned_cols=215 Identities=27% Similarity=0.379 Sum_probs=187.1
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..+.++|++..++ ++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 40 ~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEE
Confidence 3588999988773 34699999999999999999999999999999999998764 48999999988
Q ss_pred CCc--ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 925 KKQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 925 ~~~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
... ...++.+||++|+..+++.+||+|++.|.+.++. .+..+..+.++++++.++|.+..++.+ +.||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHH
Confidence 643 2345679999999999999999999987665442 223334456788999999998888775 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.+.||++++|++ |++++.|
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g 254 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 999999999999999999999999999999999999999999878999999999986 68889999999986 7999999
Q ss_pred CC
Q 000524 1083 PL 1084 (1444)
Q Consensus 1083 ~~ 1084 (1444)
+.
T Consensus 255 ~~ 256 (340)
T PRK13536 255 RP 256 (340)
T ss_pred CH
Confidence 86
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=359.79 Aligned_cols=208 Identities=21% Similarity=0.297 Sum_probs=179.2
Q ss_pred cceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-------cceEEEEcCCCC
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDN 236 (1444)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1444)
.+.+|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 456999999999999999999999999999999999999997 9999999999876544 467999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccc
Q 000524 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1444)
+++++||+||+.|+.+..+... .+...++.++++.+||++..++.+
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~vgL~~~~~~~p 127 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPE----------------------------------QERKEKALELLKLVGLEEYEHRYP 127 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCchhhhCCh
Confidence 9999999999999865433210 011234677899999987776555
Q ss_pred cCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEE
Q 000524 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1444)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1444)
+ .|||||||||+|||||+.+|+++||||||+|||+.++.++.+.|+++.+..+ .+|+.++|+..++..++|+|+
T Consensus 128 ~-----~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~-~Tii~vTHd~~ea~~~~drI~ 201 (363)
T TIGR01186 128 D-----ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ-KTIVFITHDLDEAIRIGDRIV 201 (363)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEE
Confidence 4 6999999999999999999999999999999999999999999998865334 455568899999999999999
Q ss_pred EEcCCeEEEecChhhHHH
Q 000524 397 LLSDGQIVYQGPRELVLE 414 (1444)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1444)
+|++|+++..|+++++..
T Consensus 202 vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 202 IMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEeCCEEEeeCCHHHHHh
Confidence 999999999999988753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=357.72 Aligned_cols=214 Identities=24% Similarity=0.376 Sum_probs=188.4
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.++|++..+. ++.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 478899987763 24689999999999999999999999999999999998763 489999999876
Q ss_pred Ccc-cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000524 926 KQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 1004 (1444)
Q Consensus 926 ~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1004 (1444)
... ..+|.+|||+|+..++|.+||+||+.|....+. .+.++.++.++++++.++|.+..+.. +..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 542 235779999999999999999999999865542 34456667899999999999888776 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcC
Q 000524 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083 (1444)
Q Consensus 1005 kRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~ 1083 (1444)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|+++|+++ ++.+++|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999996 78899999999996 79999998
Q ss_pred C
Q 000524 1084 L 1084 (1444)
Q Consensus 1084 ~ 1084 (1444)
.
T Consensus 221 ~ 221 (351)
T PRK11432 221 P 221 (351)
T ss_pred H
Confidence 6
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=358.54 Aligned_cols=214 Identities=24% Similarity=0.335 Sum_probs=187.6
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEE--EEEEEcCc
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIT--GNITISGY 923 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~--G~i~i~g~ 923 (1444)
.+.++|+++.+. ...+|+|+|+++++||+++|+|||||||||||++|+|...+ .+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCE
Confidence 478889888773 24699999999999999999999999999999999998664 36 99999998
Q ss_pred cCCcc-cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 924 PKKQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 924 ~~~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
+.... ..++.+|||+|+..++|.+||+||+.|....+ ..+.++.++.++++++.++|.+..++.+ ..||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 76432 23567999999999999999999999986543 2344555667999999999999888774 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCCHHHHHhcceEEEEecCcEEEE
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1080 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~--g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y 1080 (1444)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999876 799999999986 68899999999985 89999
Q ss_pred EcCC
Q 000524 1081 VGPL 1084 (1444)
Q Consensus 1081 ~G~~ 1084 (1444)
.|+.
T Consensus 220 ~g~~ 223 (362)
T TIGR03258 220 HGEP 223 (362)
T ss_pred EcCH
Confidence 9986
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=360.73 Aligned_cols=207 Identities=23% Similarity=0.344 Sum_probs=179.6
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCee--cEEEECCccCCCCCc-cceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVS--GRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~--G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 241 (1444)
..+|+|+|+.+++|++++|+|||||||||||++|+|..+|+ + |+|.++|+++....+ ++.++||+|+..++|.+
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 35899999999999999999999999999999999999997 8 999999998876544 46799999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
||+||+.|+.+..+... .+.+.+++++++.+||++..|..+
T Consensus 95 tv~enl~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~~----- 135 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMPK----------------------------------ADIAERVADALKLVGLGDAAAHLP----- 135 (362)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCCchhhCCh-----
Confidence 99999999875432110 011234678899999998877655
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
+.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..++++++.++|+..++..++|+|++|++|
T Consensus 136 ~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 136 AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215 (362)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 47999999999999999999999999999999999999999999998875432456666889999999999999999999
Q ss_pred eEEEecChhhHH
Q 000524 402 QIVYQGPRELVL 413 (1444)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1444)
+++..|+++++.
T Consensus 216 ~i~~~g~~~~~~ 227 (362)
T TIGR03258 216 RLAAHGEPQALY 227 (362)
T ss_pred EEEEEcCHHHHH
Confidence 999999999884
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=336.86 Aligned_cols=210 Identities=28% Similarity=0.403 Sum_probs=176.8
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 4677776663 2469999999999999999999999999999999999765 358999999987643
Q ss_pred c-cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000524 928 E-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 1006 (1444)
Q Consensus 928 ~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkR 1006 (1444)
. ..++.++|++|++.+++.+|++|++.+...... ...+..++.++++++.++|.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 2 234578999999988889999999987654321 223344456889999999988777664 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1007 l~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999764 899999999986 57788999999986 7887654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=352.05 Aligned_cols=206 Identities=26% Similarity=0.382 Sum_probs=177.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC--ccceEEEEcCCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1444)
+.+|+|||+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 45999999999999999999999999999999999999998 999999999876432 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
|+||+.|.++..+... .+...+++.+++.+||.+.+++.++
T Consensus 97 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 137 (306)
T PRK13537 97 VRENLLVFGRYFGLSA----------------------------------AAARALVPPLLEFAKLENKADAKVG----- 137 (306)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCchh-----
Confidence 9999998665443110 0012245678899999988887765
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
+|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|..+++.++||+|++|++|+
T Consensus 138 ~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~till~sH~l~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 138 ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVIEEGR 215 (306)
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999854 3 4556667888999999999999999999
Q ss_pred EEEecChhhHHH
Q 000524 403 IVYQGPRELVLE 414 (1444)
Q Consensus 403 iv~~G~~~~~~~ 414 (1444)
+++.|+.+++..
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999998754
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=360.84 Aligned_cols=206 Identities=27% Similarity=0.367 Sum_probs=178.6
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1444)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|++.++|.+||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 35899999999999999999999999999999999999997 9999999999876544 4779999999999999999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1444)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1444)
+||+.|+.+.++... .+.+..++++++.+||++..+..+ ..
T Consensus 104 ~eNi~~~l~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~p-----~~ 144 (375)
T PRK09452 104 FENVAFGLRMQKTPA----------------------------------AEITPRVMEALRMVQLEEFAQRKP-----HQ 144 (375)
T ss_pred HHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 999999865332110 011234677899999998777554 57
Q ss_pred cchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000524 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1444)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1444)
|||||||||+|||||+.+|++||||||+++||..++..+.+.|+++.+.. ++++|.++|+..++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tiI~vTHd~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644 45556688999999999999999999999
Q ss_pred EEecChhhHH
Q 000524 404 VYQGPRELVL 413 (1444)
Q Consensus 404 v~~G~~~~~~ 413 (1444)
+..|+++++.
T Consensus 224 ~~~g~~~~i~ 233 (375)
T PRK09452 224 EQDGTPREIY 233 (375)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=353.93 Aligned_cols=202 Identities=27% Similarity=0.375 Sum_probs=177.1
Q ss_pred ceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc--ccccceEEEEecCCCCCCCCc
Q 000524 871 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVT 948 (1444)
Q Consensus 871 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~~lT 948 (1444)
++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 35699999999999999999999999999999999998653 48999999987643 234567999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000524 949 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1444)
Q Consensus 949 v~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsg 1028 (1444)
|+|++.+.+.++. ......++.++++++.++|.+..++.+ +.||||||||++||+||+.+|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998766542 223344556899999999998877764 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1029 LD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
||+.++..+++.|++++++|+|||+++|++. ++.+.||++++|++ |++++.|+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999877999999999986 68889999999986 899999975
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=308.63 Aligned_cols=196 Identities=26% Similarity=0.339 Sum_probs=172.5
Q ss_pred ccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcc-cccceEEEEecCCCCCCCCcHHHHHHH
Q 000524 877 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLLY 955 (1444)
Q Consensus 877 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f 955 (1444)
..+..|.+||++||+||||||||||||+|+|...+ .+|.|+|||.+.... ...|-++.++|+..+|.++||++|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 57788999999999999999999999999998764 489999999986553 356678899999999999999999977
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 000524 956 SAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035 (1444)
Q Consensus 956 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~ 1035 (1444)
+.. |.-.-.++.++.++.++..+||..+.+.+. ..||||||||+++||+|+++-+||+||||.|.||+.-+.
T Consensus 95 Gl~---P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLS---PGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCC---cccccCHHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 532 221123445567999999999999999884 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1036 IVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1036 ~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
++...+.+++++ +.|+++++|+|+ |.....|+++++++ |++.+.|+.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 999999999865 899999999997 89999999999996 899999986
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=334.83 Aligned_cols=215 Identities=25% Similarity=0.353 Sum_probs=179.9
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
.++|+++.++.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 70 (220)
T cd03293 2 EVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVTG 70 (220)
T ss_pred eEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcc
Confidence 467777666310 0114699999999999999999999999999999999998653 48999999987642
Q ss_pred ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHH
Q 000524 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRL 1007 (1444)
Q Consensus 928 ~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl 1007 (1444)
.++.++|++|++.+++.+|++|++.+....+. ...+...+.++++++.++|.+..++.+ ..||||||||+
T Consensus 71 --~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 140 (220)
T cd03293 71 --PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRV 140 (220)
T ss_pred --ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHH
Confidence 35678999999988888999999988754431 223344556889999999988777663 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEec-CcEEEEEcCC
Q 000524 1008 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGPL 1084 (1444)
Q Consensus 1008 ~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~v~ll~~-gg~~~y~G~~ 1084 (1444)
+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|++. ++.+.+|++++|++ .|+++..++.
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999999999999865 4899999999986 57788999999985 4899888765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=355.78 Aligned_cols=216 Identities=24% Similarity=0.374 Sum_probs=186.0
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++.
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 67788887763 24699999999999999999999999999999999998653 4899999998764
Q ss_pred cc-cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000524 927 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 1004 (1444)
Q Consensus 927 ~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1004 (1444)
.. ..++.+|||+|+..++|.+||+||+.|....+.. ...+.++.++.++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 32 2346799999999999999999999987654211 12344555667899999999998887763 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcC
Q 000524 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083 (1444)
Q Consensus 1005 kRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~ 1083 (1444)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|+++|++. ++...+|++++|++ |++++.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999866 899999999996 68899999999986 89999998
Q ss_pred C
Q 000524 1084 L 1084 (1444)
Q Consensus 1084 ~ 1084 (1444)
.
T Consensus 221 ~ 221 (353)
T PRK10851 221 P 221 (353)
T ss_pred H
Confidence 6
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=335.38 Aligned_cols=208 Identities=24% Similarity=0.319 Sum_probs=175.5
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehh
Confidence 567888877631 123599999999999999999999999999999999997653 4899999998753
Q ss_pred cc------cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000524 927 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000 (1444)
Q Consensus 927 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1000 (1444)
.. .+++.++|++|++.+++.+||.|++.+....+. ...+..++.++++++.++|.+..++.+ ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 245678999999988899999999988755431 223344556899999999988777664 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999999999999999999999999999777999999999986 57778999999986 44
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=333.19 Aligned_cols=209 Identities=24% Similarity=0.412 Sum_probs=177.5
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 5677777653 2469999999999999999999999999999999999765 358999999987643
Q ss_pred ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHH
Q 000524 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRL 1007 (1444)
Q Consensus 928 ~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl 1007 (1444)
..++.++|++|+..+++.+|++|++.+....+. .......+.++++++.+++.+..++. +..||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHH
Confidence 345678999999988889999999988655432 22333445688999999998877665 357999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1008 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1008 ~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
+||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999998877899999999986 57788999999986 7877654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=360.45 Aligned_cols=215 Identities=27% Similarity=0.434 Sum_probs=183.6
Q ss_pred CCceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcC
Q 000524 843 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG 922 (1444)
Q Consensus 843 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g 922 (1444)
-...++|+||+|+|+..+ +..+|+|+||+|+|||.|||+||||+||||+.++|.+... +.+|+|.+||
T Consensus 462 ~~G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG 529 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDG 529 (716)
T ss_pred ccceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECC
Confidence 345799999999998653 4679999999999999999999999999999999997665 4589999999
Q ss_pred ccCCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-------cCCccccccccc
Q 000524 923 YPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL-------VELKPLIQSLVG 992 (1444)
Q Consensus 923 ~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~-------l~L~~~~~~~vg 992 (1444)
.|+++ ..+++.+|+|.|+|.+|. -||+||+.|+.. ..+.++ ++++.++ .++.+-.||.||
T Consensus 530 ~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~----i~~AAk~ANah~FI~~~p~gY~T~VG 599 (716)
T KOG0058|consen 530 VPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEE----IEAAAKMANAHEFITNFPDGYNTVVG 599 (716)
T ss_pred eehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHH----HHHHHHHhChHHHHHhCccccccccC
Confidence 99765 356789999999999985 699999999743 233332 2333322 356777899999
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000524 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1072 (1444)
Q Consensus 993 ~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll 1072 (1444)
..|. .||||||||++|||||++||+||||||+||.||++++..|+++|.++.+ ++|||+++|+.| ..+.+|+|+++
T Consensus 600 EkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi 675 (716)
T KOG0058|consen 600 EKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVI 675 (716)
T ss_pred Cccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEE
Confidence 8764 7999999999999999999999999999999999999999999998865 699999999975 68899999999
Q ss_pred ecCcEEEEEcCC
Q 000524 1073 KRGGQEIYVGPL 1084 (1444)
Q Consensus 1073 ~~gg~~~y~G~~ 1084 (1444)
++ |+++..|.-
T Consensus 676 ~~-G~V~E~G~h 686 (716)
T KOG0058|consen 676 DK-GRVVEMGTH 686 (716)
T ss_pred cC-CeEEecccH
Confidence 86 899999963
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=349.99 Aligned_cols=214 Identities=28% Similarity=0.374 Sum_probs=183.3
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.++|+++.+. ++.+|+|||+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 377888887763 24699999999999999999999999999999999997653 489999999875
Q ss_pred Cc--ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000524 926 KQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 1003 (1444)
Q Consensus 926 ~~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGq 1003 (1444)
.. ...++.+||++|++.+++.+||+|++.+.+.... .+.+...+.++++++.++|.+..++.+ ..|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 43 2245679999999998999999999987554321 223333456788999999998877764 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcC
Q 000524 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083 (1444)
Q Consensus 1004 rkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~ 1083 (1444)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 68889999999985 79999997
Q ss_pred C
Q 000524 1084 L 1084 (1444)
Q Consensus 1084 ~ 1084 (1444)
.
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 5
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=332.75 Aligned_cols=210 Identities=26% Similarity=0.396 Sum_probs=177.6
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCc
Confidence 5677777663 23699999999999999999999999999999999998653 48999999987643
Q ss_pred c-cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000524 928 E-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 1006 (1444)
Q Consensus 928 ~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkR 1006 (1444)
. ..++.++|++|++.+++..|++|++.+....+. ...++.++.++++++.+++.+..+..+ ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHH
Confidence 2 224579999999988889999999988654331 223344556889999999988777764 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1007 l~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++++|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999864 899999999985 57788999999986 7888775
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=334.10 Aligned_cols=212 Identities=28% Similarity=0.373 Sum_probs=180.1
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
.++|+++.+. .+.+|+|+|+++++||++||+|+||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~ 66 (220)
T cd03265 2 EVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecCc
Confidence 5677777663 24699999999999999999999999999999999998653 48999999986532
Q ss_pred --ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000524 928 --ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 1005 (1444)
Q Consensus 928 --~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1005 (1444)
...++.++|++|++.+++.+||+|++.+....+. ...++.++.++++++.++|.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 138 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRR 138 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHH
Confidence 2234678999999998999999999988754432 223334456889999999988777764 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1006 Rl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTP 216 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCCh
Confidence 999999999999999999999999999999999999999876 899999999986 57788999999985 799888764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=315.58 Aligned_cols=205 Identities=26% Similarity=0.349 Sum_probs=182.9
Q ss_pred CceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCccc----ccceEEEEecCCCCCC
Q 000524 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET----FARISGYCEQNDIHSP 945 (1444)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~q~~~~~~ 945 (1444)
++++++++||+.+++||++||+|||||||||.+.++.|...+ .+|.|.+||.+++... -+.-+||+||+...|.
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~--d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec--CCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 567899999999999999999999999999999999998764 4899999999876532 2345899999999999
Q ss_pred CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000524 946 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025 (1444)
Q Consensus 946 ~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEP 1025 (1444)
.+||+||++-....+.. +....+++..++++|+.+++.+++++.. ..||||||+|+.|||||+.+|+.++||||
T Consensus 93 ~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 93 KLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999877666642 2233466677899999999999999873 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1026 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1026 TsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
.+|+||-+-..|+++++.+.+.|.-|++|-|.-+ |....|||.+++.+ |++...|.+
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p 223 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSP 223 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCH
Confidence 9999999999999999999999999999999997 79999999999996 899999986
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=309.23 Aligned_cols=199 Identities=27% Similarity=0.396 Sum_probs=175.6
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc------cceEEEEcCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1444)
..+|+|||+.|++||++.|+||||||||||||+|.+...|+ .|+|.+||+++..... +|.+|+|+||-.++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 56999999999999999999999999999999999999998 9999999999876532 58999999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+..||.||++|+.+..|... .+.+.++.++|+..||.+.++..
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~~~l--- 134 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKHKARAL--- 134 (223)
T ss_pred ccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccchhhhcC---
Confidence 99999999999988765321 12345678899999999988744
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
+..|||||||||+||||++.+|++|+-||||-.||+.++.+|++.+.++.+ -+|+|+..+|+..-+..+--+++.|
T Consensus 135 --P~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~~rvl~l 210 (223)
T COG2884 135 --PSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVLAL 210 (223)
T ss_pred --ccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhccCcEEEE
Confidence 457999999999999999999999999999999999999999999999864 3666777888888888888899999
Q ss_pred cCCeEEEec
Q 000524 399 SDGQIVYQG 407 (1444)
Q Consensus 399 ~~G~iv~~G 407 (1444)
++|+++...
T Consensus 211 ~~Grl~~d~ 219 (223)
T COG2884 211 EDGRLVRDE 219 (223)
T ss_pred eCCEEEecc
Confidence 999998754
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=355.12 Aligned_cols=214 Identities=22% Similarity=0.327 Sum_probs=187.5
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478999988773 24699999999999999999999999999999999998763 489999999876
Q ss_pred Ccc-cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000524 926 KQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 1004 (1444)
Q Consensus 926 ~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1004 (1444)
... ..+|.+|||+|+..++|.+||+||+.|+...+ ..+..+.++.++++++.++|.+..+..+ ..||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 432 23577999999999999999999999986543 2334455667899999999998888764 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcC
Q 000524 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083 (1444)
Q Consensus 1005 kRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~ 1083 (1444)
|||+|||||+.+|++|+|||||+|||..++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999865 999999999986 78999999999985 89999998
Q ss_pred C
Q 000524 1084 L 1084 (1444)
Q Consensus 1084 ~ 1084 (1444)
.
T Consensus 229 ~ 229 (375)
T PRK09452 229 P 229 (375)
T ss_pred H
Confidence 5
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=335.03 Aligned_cols=221 Identities=37% Similarity=0.610 Sum_probs=182.0
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCC-ceEEEEEEEcCccC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG-GYITGNITISGYPK 925 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~-~~~~G~i~i~g~~~ 925 (1444)
+.|+|+++.++... ..+.+|+|+|+++++||+++|+||||||||||+++|+|.... .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNWN---------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecCc---------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 45788887764210 135799999999999999999999999999999999997641 23589999999877
Q ss_pred CcccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHHcCCcccccccccCCCCCcCCHHHH
Q 000524 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE-VMELVELKPLIQSLVGLPGVSGLSTEQR 1004 (1444)
Q Consensus 926 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~-~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1004 (1444)
.....++.++|++|++..++.+||+||+.|.+....+.....+.....+++ .++.+++.+..++. ++.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 544556789999999999999999999998765443222222223334555 89999998776655 457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1005 kRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|++..++.+.||++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998777899999999985578999999999986 7888765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=333.00 Aligned_cols=207 Identities=28% Similarity=0.402 Sum_probs=179.7
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCC----CCCccceEEEEcCCC-CCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG----EFVPERTAAYISQHD-NHIG 239 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~----~~~~~~~~~yv~Q~d-~~~~ 239 (1444)
..+|+|+|+.+++|+.++|+||||||||||+++|+|.+.|. +|+|.++|.+.. ....++.+|||+|+| ..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 56999999999999999999999999999999999999998 899999998865 223468899999997 4567
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000524 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1444)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1444)
..||.|.++|+.+..+... .+.+.+++.+++.+||.+.++.
T Consensus 94 ~~tV~~evafg~~n~g~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~r----- 134 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPR----------------------------------EEIEERVAEALELVGLEELLDR----- 134 (235)
T ss_pred cCcHHHHHhhchhhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhccC-----
Confidence 7899999999987765421 0123567889999999988764
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc
Q 000524 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1444)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1444)
.+..|||||||||+||.+|+.+|++|+|||||+|||+..+.++++.++++... ++.+||.++|+...+.+++|++++|+
T Consensus 135 ~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 135 PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 45579999999999999999999999999999999999999999999998764 44555668899999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 000524 400 DGQIVYQGPRELVLE 414 (1444)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1444)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877653
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=337.28 Aligned_cols=215 Identities=27% Similarity=0.350 Sum_probs=179.6
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
+++|+++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 4677776653 2469999999999999999999999999999999999865 348999999987643
Q ss_pred cc----ccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCC-------CCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000524 928 ET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE-------VDSETRKMFIEEVMELVELKPLIQSLVGLPGV 996 (1444)
Q Consensus 928 ~~----~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~-------~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1444)
.. .++.++|++|++.+++.+||+|++.+....+.... ...+...+.++++++.+++.+..++. +
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----A 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----h
Confidence 21 23458999999999999999999988754332110 11233455688999999998777665 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCc
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg 1076 (1444)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-G 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999999877999999999986 57788999999986 7
Q ss_pred EEEEEcCC
Q 000524 1077 QEIYVGPL 1084 (1444)
Q Consensus 1077 ~~~y~G~~ 1084 (1444)
++++.|+.
T Consensus 220 ~i~~~~~~ 227 (236)
T cd03219 220 RVIAEGTP 227 (236)
T ss_pred EEEeecCH
Confidence 99998875
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=307.54 Aligned_cols=201 Identities=25% Similarity=0.393 Sum_probs=173.1
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 000524 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1444)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1444)
..+..|++||+++|+|||||||||||++|+|...|. +|+|.+||++.+...| +|-++.++|+.++|..+||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 467889999999999999999999999999999998 9999999999887666 578999999999999999999999
Q ss_pred HhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccccchhh
Q 000524 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1444)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1444)
++.. ++-+ +.. +....++.++...||..+.+...+ .|||||
T Consensus 94 LGl~---P~Lk------L~a-------------------------~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGq 134 (231)
T COG3840 94 LGLS---PGLK------LNA-------------------------EQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQ 134 (231)
T ss_pred ccCC---cccc------cCH-------------------------HHHHHHHHHHHHhChhhHhhhCcc-----ccCchH
Confidence 8753 1111 000 112346788999999998876554 699999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeEEEecC
Q 000524 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1444)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~ 408 (1444)
||||++||+|+.+.+|++||||+|+||+.-+.+....+.+++...+.|+++ ++|..+++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~Tllm-VTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLM-VTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEE-EeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999998766666655 5666678999999999999999999999
Q ss_pred hhhHH
Q 000524 409 RELVL 413 (1444)
Q Consensus 409 ~~~~~ 413 (1444)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 88764
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=333.46 Aligned_cols=214 Identities=22% Similarity=0.339 Sum_probs=187.5
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|++|.++. +..+|+|+|+.+++||.++|+|+||||||||+++|+|...+ ..|.|.++|.+..
T Consensus 4 i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeecc
Confidence 678899988752 24799999999999999999999999999999999998764 4799999999865
Q ss_pred ----cccccceEEEEecCCCCC-CCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000524 927 ----QETFARISGYCEQNDIHS-PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 1001 (1444)
Q Consensus 927 ----~~~~~~~~gyv~q~~~~~-~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1001 (1444)
...+++.+|||+|++... -.-||.|.+.|+..-. ..+.++.+++++++++.+++.+.++.. +..|||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSG 141 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLSG 141 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCC
Confidence 345788899999998664 4579999999986433 345566788899999999999998776 468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEE
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1080 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y 1080 (1444)
||||||+||.+|+.+|++|+|||||||||+.+...+++.++++.++ |.|||+++|+.. .+.+.+|++++|++ |++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~ 219 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILA 219 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEee
Confidence 9999999999999999999999999999999999999999999877 689999999986 57888999999996 89999
Q ss_pred EcCC
Q 000524 1081 VGPL 1084 (1444)
Q Consensus 1081 ~G~~ 1084 (1444)
.|++
T Consensus 220 ~g~p 223 (235)
T COG1122 220 DGDP 223 (235)
T ss_pred cCCH
Confidence 9985
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=338.34 Aligned_cols=207 Identities=28% Similarity=0.361 Sum_probs=172.5
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC------ccceEEEEcCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV------PERTAAYISQHDNHI 238 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++||+|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 45999999999999999999999999999999999999987 999999999876543 245799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+.+||+||+.++.+....... .+....++.+++.+||++..++.+
T Consensus 90 ~~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (235)
T cd03261 90 DSLTVFENVAFPLREHTRLSE---------------------------------EEIREIVLEKLEAVGLRGAEDLYP-- 134 (235)
T ss_pred CCCcHHHHHHHHHhhccCCCH---------------------------------HHHHHHHHHHHHHcCCchhhcCCh--
Confidence 999999999986432100000 001123567789999987666555
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|+|++|
T Consensus 135 ---~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~vsH~~~~~~~~~d~v~~l 210 (235)
T cd03261 135 ---AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELG-LTSIMVTHDLDTAFAIADRIAVL 210 (235)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcC-cEEEEEecCHHHHHHhcCEEEEE
Confidence 46999999999999999999999999999999999999999999999865334 45555778888899999999999
Q ss_pred cCCeEEEecChhhHH
Q 000524 399 SDGQIVYQGPRELVL 413 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1444)
++|++++.|+.+++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (235)
T cd03261 211 YDGKIVAEGTPEELR 225 (235)
T ss_pred ECCeEEEecCHHHHc
Confidence 999999999987653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=353.17 Aligned_cols=217 Identities=22% Similarity=0.289 Sum_probs=184.2
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
++++|++++++.. ...+.+|+|+|+++++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 5688888877411 0135699999999999999999999999999999999998653 4899999998764
Q ss_pred cc------cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000524 927 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000 (1444)
Q Consensus 927 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1000 (1444)
.. .+++.+||++|+..+++.+||+||+.+....+. .+.++.++.++++++.++|.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 235679999999999999999999998755431 233444567899999999988777663 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEE
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1079 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~ 1079 (1444)
||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 57788999999985 8999
Q ss_pred EEcCC
Q 000524 1080 YVGPL 1084 (1444)
Q Consensus 1080 y~G~~ 1084 (1444)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T PRK11153 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99985
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=365.95 Aligned_cols=217 Identities=29% Similarity=0.431 Sum_probs=181.9
Q ss_pred cCCCCceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEE
Q 000524 840 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNIT 919 (1444)
Q Consensus 840 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~ 919 (1444)
.|.-+..++|+|++|.|.. +...+|+|+|++|+|||.+||+|+||||||||+|+|+|... +.+|+|+
T Consensus 465 ~~~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~ 531 (709)
T COG2274 465 LPKLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRIL 531 (709)
T ss_pred ccccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEE
Confidence 4445568999999999863 22369999999999999999999999999999999999876 4589999
Q ss_pred EcCccCCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccc
Q 000524 920 ISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-------LIQS 989 (1444)
Q Consensus 920 i~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~ 989 (1444)
+||++.++ ..+|+.+|||+||+.++ +-|++||+.++. | +.+.+ .+.++++..|..+ -.|+
T Consensus 532 ~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~----p-~~~~e----~i~~A~~~ag~~~fI~~lP~gy~t 601 (709)
T COG2274 532 LDGVDLNDIDLASLRRQVGYVLQDPFLF-SGSIRENIALGN----P-EATDE----EIIEAAQLAGAHEFIENLPMGYDT 601 (709)
T ss_pred ECCEeHHhcCHHHHHhheeEEcccchhh-cCcHHHHHhcCC----C-CCCHH----HHHHHHHHhCcHHHHHhccccccc
Confidence 99998654 46789999999999887 479999997642 2 22222 3455555555443 4466
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceE
Q 000524 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDEL 1069 (1444)
Q Consensus 990 ~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v 1069 (1444)
.+|.. ..+||||||||++|||||+++|+||+||||||+||+.+++.|++.|.++. +|+|+|+++|+++ ....+|+|
T Consensus 602 ~v~E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrI 677 (709)
T COG2274 602 PVGEG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRI 677 (709)
T ss_pred ccccC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEE
Confidence 67754 46899999999999999999999999999999999999999999999985 5799999999985 78999999
Q ss_pred EEEecCcEEEEEcCC
Q 000524 1070 FLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1070 ~ll~~gg~~~y~G~~ 1084 (1444)
++|++ |+++..|+.
T Consensus 678 iVl~~-Gkiv~~gs~ 691 (709)
T COG2274 678 IVLDQ-GKIVEQGSH 691 (709)
T ss_pred EEccC-CceeccCCH
Confidence 99985 899999986
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=321.60 Aligned_cols=216 Identities=26% Similarity=0.344 Sum_probs=178.8
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
++.+|++..++... ....+|+|||+++.+||++||+|+||||||||.++|+|...+ .+|+|.++|.+..
T Consensus 4 l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~~ 72 (252)
T COG1124 4 LSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPLA 72 (252)
T ss_pred EEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCcccC
Confidence 67788877765321 112599999999999999999999999999999999998764 5899999998754
Q ss_pred cc----cccceEEEEecCCC--CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcC
Q 000524 927 QE----TFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSLVGLPGVSGL 999 (1444)
Q Consensus 927 ~~----~~~~~~gyv~q~~~--~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~l 999 (1444)
.. .+.+.+.+|+||+. +.|..||++.|.=.... ...++.++ ++.++++.+||.+. .+.. +..|
T Consensus 73 ~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~~--~i~~~L~~VgL~~~~l~R~-----P~eL 142 (252)
T COG1124 73 PKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQQ--RIAELLDQVGLPPSFLDRR-----PHEL 142 (252)
T ss_pred ccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHHH--HHHHHHHHcCCCHHHHhcC-----chhc
Confidence 43 36778999999986 45889999988654332 22233332 38999999999864 3333 4579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEE
Q 000524 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1078 (1444)
Q Consensus 1000 SgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~ 1078 (1444)
|||||||++|||||+.+|++|+||||||.||+..++.|++.|.++.++ |-|.|+++|+.+ -+..+|||+++|++ |++
T Consensus 143 SGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~i 220 (252)
T COG1124 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQI 220 (252)
T ss_pred ChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-CeE
Confidence 999999999999999999999999999999999999999999999765 779999999987 48889999999996 899
Q ss_pred EEEcCCC
Q 000524 1079 IYVGPLG 1085 (1444)
Q Consensus 1079 ~y~G~~~ 1085 (1444)
+..+|.+
T Consensus 221 vE~~~~~ 227 (252)
T COG1124 221 VEIGPTE 227 (252)
T ss_pred EEeechh
Confidence 9999974
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=354.83 Aligned_cols=210 Identities=27% Similarity=0.401 Sum_probs=177.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1444)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|++.+++.+||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 35999999999999999999999999999999999999998 9999999998865544 3679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1444)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1444)
+||+.|+.+....... + + ..+...+++.+++.+||++..|..+ ..
T Consensus 92 ~eni~~~~~~~~~~~~-----------------~--~-----------~~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRER-----------------P--N-----------AAAIKAKVTQLLEMVQLAHLADRYP-----AQ 136 (353)
T ss_pred HHHHHhhhhhcccccC-----------------C--C-----------HHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 9999997653210000 0 0 0011234678899999987776554 57
Q ss_pred cchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000524 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1444)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1444)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tii~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEEL-KFTSVFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987533 45566688999999999999999999999
Q ss_pred EEecChhhHH
Q 000524 404 VYQGPRELVL 413 (1444)
Q Consensus 404 v~~G~~~~~~ 413 (1444)
++.|+++++.
T Consensus 216 ~~~g~~~~i~ 225 (353)
T PRK10851 216 EQAGTPDQVW 225 (353)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=319.61 Aligned_cols=207 Identities=25% Similarity=0.382 Sum_probs=174.0
Q ss_pred cceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCcc----ceEEEEcCCCCCCC
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHIG 239 (1444)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1444)
+.++|++||+.+++||+++|+||||+|||||||+|+|..++. +|+|.++|++++...+. +-++||||....|+
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 467999999999999999999999999999999999999987 99999999999987664 56899999999999
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhC-CcccccccccC
Q 000524 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LEVCADTMVGD 318 (1444)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~ 318 (1444)
.|||+|||..++..+.... . . ....|.+.+.|- |.+-.+..-|
T Consensus 92 ~LTVeENL~~g~~~~~~~~-----------~------~------------------~~~~e~v~~lFP~Lker~~~~aG- 135 (237)
T COG0410 92 RLTVEENLLLGAYARRDKE-----------A------Q------------------ERDLEEVYELFPRLKERRNQRAG- 135 (237)
T ss_pred hCcHHHHHhhhhhcccccc-----------c------c------------------cccHHHHHHHChhHHHHhcCccc-
Confidence 9999999998764321100 0 0 000233344442 4444455544
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
.|||||||-++|||||+++|++|+|||||.||-|.-..+|.+.|+++.+. ++.+|+.+.|+...+.+++|+.++|
T Consensus 136 ----~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~~Al~iaDr~yvl 210 (237)
T COG0410 136 ----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNARFALEIADRGYVL 210 (237)
T ss_pred ----CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHHHHHHhhCEEEEE
Confidence 59999999999999999999999999999999999999999999998764 3567777999999999999999999
Q ss_pred cCCeEEEecChhhHHH
Q 000524 399 SDGQIVYQGPRELVLE 414 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1444)
.+|+|++.|+.+++.+
T Consensus 211 e~Griv~~G~~~eL~~ 226 (237)
T COG0410 211 ENGRIVLSGTAAELLA 226 (237)
T ss_pred eCCEEEEecCHHHHhc
Confidence 9999999999998853
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=336.08 Aligned_cols=216 Identities=25% Similarity=0.378 Sum_probs=180.8
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (239)
T cd03296 3 IEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDAT 67 (239)
T ss_pred EEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 67888887763 2469999999999999999999999999999999999865 35899999998764
Q ss_pred cc-cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000524 927 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 1004 (1444)
Q Consensus 927 ~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1004 (1444)
.. ..++.++|++|++.+++.+||+|++.+....+.. .........+.++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (239)
T cd03296 68 DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQR 142 (239)
T ss_pred cCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHH
Confidence 32 2245689999999888899999999886543211 00122333456789999999987777653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcC
Q 000524 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083 (1444)
Q Consensus 1005 kRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~ 1083 (1444)
||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 220 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGT 220 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecC
Confidence 9999999999999999999999999999999999999999875 899999999986 57888999999985 79999987
Q ss_pred C
Q 000524 1084 L 1084 (1444)
Q Consensus 1084 ~ 1084 (1444)
.
T Consensus 221 ~ 221 (239)
T cd03296 221 P 221 (239)
T ss_pred H
Confidence 5
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=352.30 Aligned_cols=206 Identities=26% Similarity=0.364 Sum_probs=175.7
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc------cceEEEEcCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1444)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++||+|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 56999999999999999999999999999999999999997 9999999998865432 35799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+.+||+||+.++.+..+... .+....++.+++.+||++..++.+
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-- 138 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTPK----------------------------------AEIKARVTELLELVGLSDKADRYP-- 138 (343)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999998754432100 001124567899999987777654
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
+.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++.++||+|++|
T Consensus 139 ---~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 139 ---AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-GLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999986533 445555788888999999999999
Q ss_pred cCCeEEEecChhhHH
Q 000524 399 SDGQIVYQGPRELVL 413 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1444)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999988774
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=335.54 Aligned_cols=212 Identities=26% Similarity=0.348 Sum_probs=179.5
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
.++|+++.++ .+.+|+|+|+.+++||+++|+|||||||||||++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccc
Confidence 5677777663 24699999999999999999999999999999999998653 47999999987543
Q ss_pred c---c-ccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000524 928 E---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 1003 (1444)
Q Consensus 928 ~---~-~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGq 1003 (1444)
. . .++.++|++|++.+++.+||+|++.+....+. ...+.....++++++.+++.+..++. +..|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHH
Confidence 1 1 23468999999999999999999987643332 22333445688999999998877665 35799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcC
Q 000524 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083 (1444)
Q Consensus 1004 rkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~ 1083 (1444)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|+
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 216 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGT 216 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeC
Confidence 99999999999999999999999999999999999999999877999999999986 68899999999985 79999887
Q ss_pred C
Q 000524 1084 L 1084 (1444)
Q Consensus 1084 ~ 1084 (1444)
.
T Consensus 217 ~ 217 (232)
T cd03218 217 P 217 (232)
T ss_pred H
Confidence 5
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=333.08 Aligned_cols=215 Identities=27% Similarity=0.419 Sum_probs=179.8
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++.. .....+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcc
Confidence 4678888776411 0112699999999999999999999999999999999998653 4899999998764
Q ss_pred c--ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000524 927 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 1004 (1444)
Q Consensus 927 ~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1004 (1444)
. ..+++.++|++|++.+++.+||+|++.+....+. ...++..+.++++++.++|.+..+..+ ..||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 2345679999999988899999999987654431 233444567899999999988777653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1005 kRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999777999999999986 67888999999986 7877654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=350.43 Aligned_cols=206 Identities=27% Similarity=0.374 Sum_probs=176.7
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC--ccceEEEEcCCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1444)
+++|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999998 999999998875421 2457999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
|+||+.+.++..+... .+...+++.+++.+||++..++.++
T Consensus 83 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 123 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK----------------------------------DEAEERAEELLELFELGEAADRPVG----- 123 (302)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhCCchh-----
Confidence 9999998765432110 0011245778999999988777664
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ . +++|+.++|..+++.++||+|++|++|+
T Consensus 124 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-E-GVTILLTTHYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999864 3 4556667888899999999999999999
Q ss_pred EEEecChhhHHH
Q 000524 403 IVYQGPRELVLE 414 (1444)
Q Consensus 403 iv~~G~~~~~~~ 414 (1444)
+++.|+.+++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999988754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=354.85 Aligned_cols=214 Identities=25% Similarity=0.363 Sum_probs=185.0
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 367888887763 24699999999999999999999999999999999998653 489999999876
Q ss_pred Ccc-cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000524 926 KQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 1004 (1444)
Q Consensus 926 ~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1004 (1444)
... ..++.+||++|+..+++.+||+||+.|....+. .+.++.++.++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 432 234679999999999999999999998765432 233445567899999999998777764 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcC
Q 000524 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083 (1444)
Q Consensus 1005 kRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~ 1083 (1444)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++...+|++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 68889999999985 89999998
Q ss_pred C
Q 000524 1084 L 1084 (1444)
Q Consensus 1084 ~ 1084 (1444)
.
T Consensus 218 ~ 218 (369)
T PRK11000 218 P 218 (369)
T ss_pred H
Confidence 5
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=379.30 Aligned_cols=207 Identities=29% Similarity=0.444 Sum_probs=174.0
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1444)
.+|+|+|++|+|||.++|+|+||||||||+|+|+|++.|. +|+|.+||+++++.++ |+.++||+|++.+|. -|
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gS 562 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GS 562 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhhc-Cc
Confidence 5899999999999999999999999999999999999998 9999999999988765 589999999986655 69
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
|+||+.++. |+.+.++.+.|+...+.. | .+..++..+||.||+.+.
T Consensus 563 I~eNi~l~~-------------------------p~~~~e~i~~A~~~ag~~-----~---fI~~lP~gy~t~v~E~G~- 608 (709)
T COG2274 563 IRENIALGN-------------------------PEATDEEIIEAAQLAGAH-----E---FIENLPMGYDTPVGEGGA- 608 (709)
T ss_pred HHHHHhcCC-------------------------CCCCHHHHHHHHHHhCcH-----H---HHHhcccccccccccCCC-
Confidence 999999863 222223333333322211 1 234688999999997654
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
+||||||||++|||||+++|+||+||||||+||+.+...|.+.|.++. .++|+|+..|+ ..+.+.+|+|++|++|+
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHR--l~ti~~adrIiVl~~Gk 684 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHR--LSTIRSADRIIVLDQGK 684 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEcc--chHhhhccEEEEccCCc
Confidence 899999999999999999999999999999999999999999999875 35676665543 45889999999999999
Q ss_pred EEEecChhhHHH
Q 000524 403 IVYQGPRELVLE 414 (1444)
Q Consensus 403 iv~~G~~~~~~~ 414 (1444)
|+.+|+++++++
T Consensus 685 iv~~gs~~ell~ 696 (709)
T COG2274 685 IVEQGSHEELLA 696 (709)
T ss_pred eeccCCHHHHHH
Confidence 999999999986
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=356.03 Aligned_cols=206 Identities=23% Similarity=0.316 Sum_probs=178.0
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1444)
..+|+|+|+.+++|++++|+|||||||||||++|+|..+|+ +|+|.++|+++....+ ++.++||+|++.+||++||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 35899999999999999999999999999999999999998 9999999998876544 4789999999999999999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1444)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1444)
.||+.|+.+.++... .+...+++++++.+||.+..+..+ ++
T Consensus 109 ~eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~l~L~~~~~~~~-----~~ 149 (377)
T PRK11607 109 EQNIAFGLKQDKLPK----------------------------------AEIASRVNEMLGLVHMQEFAKRKP-----HQ 149 (377)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 999999865432110 012234678899999987766544 57
Q ss_pred cchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000524 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1444)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1444)
|||||||||+|||||+.+|++||||||+++||..++..+.+.|+++.+..+ .+++.++|+..++..++|+|++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG-VTCVMVTHDQEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999988866444 5556688899999999999999999999
Q ss_pred EEecChhhHH
Q 000524 404 VYQGPRELVL 413 (1444)
Q Consensus 404 v~~G~~~~~~ 413 (1444)
+..|+++++.
T Consensus 229 ~~~g~~~~~~ 238 (377)
T PRK11607 229 VQIGEPEEIY 238 (377)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=352.44 Aligned_cols=214 Identities=23% Similarity=0.355 Sum_probs=187.0
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.++++|++..+. +..+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488999987763 24699999999999999999999999999999999998763 489999999876
Q ss_pred Cc-ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000524 926 KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 1004 (1444)
Q Consensus 926 ~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1004 (1444)
.. ...+|.+|||+|+..++|.+||.||+.|....+ ..+..+.+++++++++.++|.+..+.. +..||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 43 234678999999999999999999999976543 234455566789999999999887776 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcC
Q 000524 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083 (1444)
Q Consensus 1005 kRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~ 1083 (1444)
|||+|||||+.+|++|+|||||++||..++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 9999999999999999999999999999999999999988654 899999999986 78999999999985 89999998
Q ss_pred C
Q 000524 1084 L 1084 (1444)
Q Consensus 1084 ~ 1084 (1444)
.
T Consensus 234 ~ 234 (377)
T PRK11607 234 P 234 (377)
T ss_pred H
Confidence 6
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=342.94 Aligned_cols=205 Identities=21% Similarity=0.252 Sum_probs=154.6
Q ss_pred CCceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcC
Q 000524 843 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG 922 (1444)
Q Consensus 843 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g 922 (1444)
.|..+.+.+|.+.++. +..+++.+++..+..-+..+++|+||+||||+++++.|..+ +..|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~ 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP 425 (582)
T ss_pred CCCeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc
Confidence 4456888888877642 11268999999999999999999999999999999998654 2466666544
Q ss_pred ccCCcccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 923 YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 923 ~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
++.++|-.|..+-+-.+.|.+ +.+....+ |..+ ++.+++-+..+||..-.- ...+.+||||
T Consensus 426 --------r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~-pG~~-----~ee~r~hl~~~Gl~g~la----~~si~~LSGG 486 (582)
T KOG0062|consen 426 --------RLRIKYFAQHHVDFLDKNVNA-VDFMEKSF-PGKT-----EEEIRRHLGSFGLSGELA----LQSIASLSGG 486 (582)
T ss_pred --------cceecchhHhhhhHHHHHhHH-HHHHHHhC-CCCC-----HHHHHHHHHhcCCCchhh----hccccccCCc
Confidence 456789888766554445443 23333333 2222 223567788999975321 2225789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
||-||++|.....+|.+|+|||||+.||..+-..+-++|++. +..||+++|+-+. |-..|+++.+.++|.-.-+.|
T Consensus 487 QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ieg 562 (582)
T KOG0062|consen 487 QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEF-ISSLCKELWVVEDGKVTPIEG 562 (582)
T ss_pred chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHH-HhhcCceeEEEcCCcEEeeec
Confidence 999999999999999999999999999999999999999887 5689999999753 777899999999754444444
Q ss_pred C
Q 000524 1083 P 1083 (1444)
Q Consensus 1083 ~ 1083 (1444)
.
T Consensus 563 ~ 563 (582)
T KOG0062|consen 563 G 563 (582)
T ss_pred c
Confidence 4
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=352.00 Aligned_cols=202 Identities=25% Similarity=0.297 Sum_probs=178.1
Q ss_pred ceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcc---cc----cceEEEEecCCCC
Q 000524 871 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---TF----ARISGYCEQNDIH 943 (1444)
Q Consensus 871 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~----~~~~gyv~q~~~~ 943 (1444)
.+.+|+|+||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.++... .+ ++.+|||+|+..+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 45699999999999999999999999999999999998763 589999999886532 22 5689999999999
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000524 944 SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023 (1444)
Q Consensus 944 ~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLD 1023 (1444)
+|.+||+||+.|...+. ..+.+++.+++.++++.++|.+..++.+ ..||||||||++|||||+.+|+||+||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999876543 2345556678999999999988877764 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1024 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1024 EPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
|||++||+.++..+++.++++.++ |+|||+++|++. ++...+|++++|++ |+++..|+.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~ 214 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTP 214 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCH
Confidence 999999999999999999999754 899999999986 58899999999985 799999975
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=346.47 Aligned_cols=212 Identities=23% Similarity=0.357 Sum_probs=183.9
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|++.++. ++.+|+|+||++++||++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67788877763 2469999999999999999999999999999999999865 35899999998764
Q ss_pred cc--cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000524 927 QE--TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 1004 (1444)
Q Consensus 927 ~~--~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1004 (1444)
.. ..++.+||++|++.+++.+||.|++.|.+.++. ...++..+.++++++.+||.+..++.+ +.||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHH
Confidence 32 345679999999999999999999998776542 223344556899999999998888774 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1005 kRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
||++||+||+++|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999864 799999999986 68899999999985 899999986
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=355.89 Aligned_cols=217 Identities=26% Similarity=0.362 Sum_probs=184.3
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.+. ++.+|+|+||.+++||+++|+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 4 L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i~ 68 (402)
T PRK09536 4 IDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDVE 68 (402)
T ss_pred EEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEcC
Confidence 67888887763 35699999999999999999999999999999999998653 5899999998764
Q ss_pred c---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 927 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 927 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
. ...++.+||++|+..+++.+||+|++.+........ ....+..++.++++++.+++.+..++. ++.||||
T Consensus 69 ~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSgG 143 (402)
T PRK09536 69 ALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSGG 143 (402)
T ss_pred cCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHH
Confidence 3 335677999999999888999999998754211100 111233455689999999999888776 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
||||+.|||+|+++|+||+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|
T Consensus 144 erQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~G 221 (402)
T PRK09536 144 ERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAAG 221 (402)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 999999999999999999999999999999999999999999877999999999986 68889999999985 8999999
Q ss_pred CCC
Q 000524 1083 PLG 1085 (1444)
Q Consensus 1083 ~~~ 1085 (1444)
+..
T Consensus 222 ~~~ 224 (402)
T PRK09536 222 PPA 224 (402)
T ss_pred CHH
Confidence 863
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=329.94 Aligned_cols=206 Identities=29% Similarity=0.390 Sum_probs=175.0
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
+++|+++.++ .+.+|+|+|+++++|++++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 5677776663 2469999999999999999999999999999999999765 358999999987643
Q ss_pred -ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000524 928 -ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 1006 (1444)
Q Consensus 928 -~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkR 1006 (1444)
...++.++|++|++.+++.+||+|++.+....+. . .++.++++++.++|.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHH
Confidence 2335678999999988889999999987654321 1 1335788999999988777653 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1007 l~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999998877899999999986 57788999999986 7887764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=333.92 Aligned_cols=215 Identities=24% Similarity=0.298 Sum_probs=177.2
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCC---CceEEEEEEEcCcc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISGYP 924 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~---~~~~~G~i~i~g~~ 924 (1444)
.++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|... ..+.+|+|.++|.+
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 68 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKD 68 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEE
Confidence 5677776653 2369999999999999999999999999999999999761 02458999999987
Q ss_pred CCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000524 925 KKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 999 (1444)
Q Consensus 925 ~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~l 999 (1444)
... ..+++.++|++|++.++ .+||+||+.+....+. ....+..++.++++++.++|.+..+.... +..|
T Consensus 69 ~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~L 142 (227)
T cd03260 69 IYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGL 142 (227)
T ss_pred hhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccC
Confidence 542 22456789999998877 7999999988654431 11222234568899999999877665421 2579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEE
Q 000524 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1079 (1444)
Q Consensus 1000 SgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~ 1079 (1444)
|||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ +|||+++|++. ++.+.||++++|++ |+++
T Consensus 143 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~ 219 (227)
T cd03260 143 SGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GRLV 219 (227)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CEEE
Confidence 999999999999999999999999999999999999999999999876 99999999986 57788999999986 7999
Q ss_pred EEcCC
Q 000524 1080 YVGPL 1084 (1444)
Q Consensus 1080 y~G~~ 1084 (1444)
+.|+.
T Consensus 220 ~~g~~ 224 (227)
T cd03260 220 EFGPT 224 (227)
T ss_pred EecCc
Confidence 99875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=355.39 Aligned_cols=206 Identities=26% Similarity=0.380 Sum_probs=176.5
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1444)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|++.+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 45899999999999999999999999999999999999997 9999999998865443 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1444)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1444)
+||+.|+.+..+... .+...+++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~lgL~~~~~~~~-----~~ 133 (369)
T PRK11000 93 AENMSFGLKLAGAKK----------------------------------EEINQRVNQVAEVLQLAHLLDRKP-----KA 133 (369)
T ss_pred HHHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCCh-----hh
Confidence 999999765332100 011224677899999987777555 46
Q ss_pred cchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000524 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1444)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1444)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g-~tvI~vTHd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhC-CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865434 4555678888899999999999999999
Q ss_pred EEecChhhHH
Q 000524 404 VYQGPRELVL 413 (1444)
Q Consensus 404 v~~G~~~~~~ 413 (1444)
++.|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=331.23 Aligned_cols=207 Identities=28% Similarity=0.395 Sum_probs=172.0
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
+++|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~ 70 (218)
T cd03255 2 ELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISK 70 (218)
T ss_pred eEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhh
Confidence 567787776310 001469999999999999999999999999999999999865 348999999987543
Q ss_pred cc-------ccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000524 928 ET-------FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000 (1444)
Q Consensus 928 ~~-------~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1000 (1444)
.. .++.++|++|++.+++.+||+|++.+....+. ......++.++++++.+||.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (218)
T cd03255 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SELS 142 (218)
T ss_pred cchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcC
Confidence 11 24578999999999999999999998765432 223334456889999999988777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~v~ll~~g 1075 (1444)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++ +.||++++|++|
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~G 216 (218)
T cd03255 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRDG 216 (218)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeCC
Confidence 9999999999999999999999999999999999999999999977 5899999999986 35 489999999863
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=349.27 Aligned_cols=229 Identities=24% Similarity=0.369 Sum_probs=187.6
Q ss_pred cCCCCCccEEEEeceEEEEEEecCCCcCCChhHHHHHHHHHHHhhhccCCCccccceEeeceeeEEeCCeEEEEEcCCCC
Q 000524 110 VGIDLPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPAS 189 (1444)
Q Consensus 110 ~~~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~Gs 189 (1444)
..+..|.=.++|+|++.+-. ++++||+++||+|++||-+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCC
Confidence 46777778899999987632 224599999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCchhhHhHHH
Q 000524 190 GKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTEL 266 (1444)
Q Consensus 190 GKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 266 (1444)
||||+|++|.+..+ . +|+|.+||+++.+..+ |+.+|||||+..+|. .||.+||.++..- ..++.+.+.
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn~s----as~eeV~e~ 460 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGNPS----ASDEEVVEA 460 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCCCC----cCHHHHHHH
Confidence 99999999999998 4 8999999999987655 578999999876555 6999999997421 223444444
Q ss_pred HHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccccchhhhhHHHHHHHHhcCCccce
Q 000524 267 ARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346 (1444)
Q Consensus 267 ~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vll 346 (1444)
|++.. + .| -...|++.++|.||+++. -|||||||||++|||++.+|+|++
T Consensus 461 ~k~a~---~-----------------------hd---~i~~l~~GY~T~VGerG~-~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 461 CKRAG---L-----------------------HD---VISRLPDGYQTLVGERGL-MLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred HHHcC---c-----------------------HH---HHHhccccchhhHhhccc-ccccchHHHHHHHHHHhcCCCeEE
Confidence 44321 0 11 134588999999999876 599999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeEEEecChhhHHH
Q 000524 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1444)
Q Consensus 347 LDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~ 414 (1444)
+|||||.||+.|..+|++.+.... .++|+|+. .|.. .+..-||+|++|++|++...|++++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~I-vH~l-~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDVM--SGRTVIMI-VHRL-DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHhc--CCCeEEEE-Eecc-hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999998732 45666664 4543 4678899999999999999999999975
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=334.09 Aligned_cols=217 Identities=24% Similarity=0.312 Sum_probs=181.3
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 4677887766310 0012699999999999999999999999999999999998653 4799999998764
Q ss_pred cc------cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000524 927 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000 (1444)
Q Consensus 927 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1000 (1444)
.. ..++.++|++|++.+++.+|++|++.+....+. .......+.++++++.++|.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAY-----PAQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCC
Confidence 31 135678999999999999999999988654332 23334455688999999998877765 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEE
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1079 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~ 1079 (1444)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 57788999999985 8999
Q ss_pred EEcCC
Q 000524 1080 YVGPL 1084 (1444)
Q Consensus 1080 y~G~~ 1084 (1444)
+.|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 98874
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=322.38 Aligned_cols=221 Identities=27% Similarity=0.380 Sum_probs=187.6
Q ss_pred ccceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCcc----ceEEEEcCCCCCC
Q 000524 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHI 238 (1444)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1444)
....+++|||+.+++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...++ .-++--+|...+|
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 4578999999999999999999999999999999999999998 99999999999988764 3577889999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
++|||.||+..++..+.. +...... |.. ..+..+...++..+|+.+||.+.+|+..|+
T Consensus 92 ~~lTVlENv~va~~~~~~---~~~~l~~----------~~~---------~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~ 149 (250)
T COG0411 92 PGLTVLENVAVGAHARLG---LSGLLGR----------PRA---------RKEEREARERARELLEFVGLGELADRPAGN 149 (250)
T ss_pred CCCcHHHHHHHHhhhhhh---hhhhhcc----------ccc---------hhhHHHHHHHHHHHHHHcCCchhhcchhhc
Confidence 999999999998764421 0000000 000 000112334578899999999999988874
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.|+++.+ .++++|+.+-|++.-++++||+|++|
T Consensus 150 -----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 150 -----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred -----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEEec
Confidence 999999999999999999999999999999999999999999999875 35577777999999999999999999
Q ss_pred cCCeEEEecChhhHHH
Q 000524 399 SDGQIVYQGPRELVLE 414 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1444)
+.|+++.+|+++++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999864
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=336.38 Aligned_cols=216 Identities=26% Similarity=0.315 Sum_probs=177.5
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
+++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYP------------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecC------------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEeccc
Confidence 4677776653 114699999999999999999999999999999999997653 47999999987643
Q ss_pred c------cccceEEEEecCCCCCCCCcHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000524 928 E------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRL-----PPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 996 (1444)
Q Consensus 928 ~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1444)
. ..++.++|++|++.+++.+||+|++.+...... ..........+.++++++.++|.+..++. +
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 142 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----A 142 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----c
Confidence 1 235678999999998899999999987532110 00111123345688899999998776665 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecC
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1075 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~g 1075 (1444)
..||||||||++||++|+.+|+||+|||||+|||+.+...+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~- 220 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD- 220 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 899999999996 57779999999986
Q ss_pred cEEEEEcCC
Q 000524 1076 GQEIYVGPL 1084 (1444)
Q Consensus 1076 g~~~y~G~~ 1084 (1444)
|++++.|+.
T Consensus 221 G~i~~~~~~ 229 (241)
T cd03256 221 GRIVFDGPP 229 (241)
T ss_pred CEEEeecCH
Confidence 799999875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=333.63 Aligned_cols=214 Identities=22% Similarity=0.343 Sum_probs=180.8
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 46778877663 2469999999999999999999999999999999999765 35899999998764
Q ss_pred c-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000524 927 Q-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 1001 (1444)
Q Consensus 927 ~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1001 (1444)
. ...++.++|++|++..++.+||+|++.+...... .......++.+.++++.+||.+..+.. ++.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCH
Confidence 2 2335678999999988889999999987642111 123334455688999999998777765 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEE
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1081 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~ 1081 (1444)
|||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999986 57788999999985 899999
Q ss_pred cCC
Q 000524 1082 GPL 1084 (1444)
Q Consensus 1082 G~~ 1084 (1444)
|+.
T Consensus 218 g~~ 220 (240)
T PRK09493 218 GDP 220 (240)
T ss_pred CCH
Confidence 885
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=328.72 Aligned_cols=192 Identities=29% Similarity=0.370 Sum_probs=163.4
Q ss_pred eEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEEecCCC-CCCCCcHH
Q 000524 872 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI-HSPFVTVY 950 (1444)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~-~~~~lTv~ 950 (1444)
+.+|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++|.+......++.++|++|++. .+...|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 359999999999999999999999999999999999765 358999999987644344567999999974 33467999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000524 951 ESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030 (1444)
Q Consensus 951 e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD 1030 (1444)
||+.+...... . ..+.++++++.++|.+..++.+ ..||||||||++|||+|+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~~-----~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKELD-----A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhcC-----c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 99987543221 1 1235789999999998877764 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEE
Q 000524 1031 ARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1079 (1444)
Q Consensus 1031 ~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~ 1079 (1444)
+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999999777999999999986 57778999999986 6653
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=328.79 Aligned_cols=206 Identities=25% Similarity=0.331 Sum_probs=173.9
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 46778877762 12369999999999999999999999999999999999865 34899999998764
Q ss_pred cc------cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000524 927 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000 (1444)
Q Consensus 927 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1000 (1444)
.. .+++.++|++|++.+++.+|+.|++.+....+. ...+..++.++++++.++|.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 31 245678999999988889999999988754331 223334556889999999987766653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~g 1075 (1444)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.||++++|++|
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999999999999999999999999999998777999999999986 677889999999864
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=330.58 Aligned_cols=216 Identities=24% Similarity=0.316 Sum_probs=179.3
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 6 l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~ 74 (233)
T PRK11629 6 LQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMS 74 (233)
T ss_pred EEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcC
Confidence 7889998877421 011469999999999999999999999999999999999865 35899999998764
Q ss_pred ccc------c-cceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000524 927 QET------F-ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 999 (1444)
Q Consensus 927 ~~~------~-~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~l 999 (1444)
... . ++.++|++|+..+++.+|++|++.+....+ ....+..++.++++++.++|.+..++. +..|
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 146 (233)
T PRK11629 75 KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSEL 146 (233)
T ss_pred cCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhC
Confidence 321 1 256899999998889999999998865432 122334455688999999998776665 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCcEE
Q 000524 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1078 (1444)
Q Consensus 1000 SgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~ 1078 (1444)
|||||||++||++|+.+|+||+|||||+|||+.+...+.+.|+++++ +|+|||+++|++. ++ +.+|++++|++ |++
T Consensus 147 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~-~~~~~~~~l~~-G~i 223 (233)
T PRK11629 147 SGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LA-KRMSRQLEMRD-GRL 223 (233)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhhCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999875 5899999999985 34 45689999985 899
Q ss_pred EEEcCC
Q 000524 1079 IYVGPL 1084 (1444)
Q Consensus 1079 ~y~G~~ 1084 (1444)
+..|++
T Consensus 224 ~~~~~~ 229 (233)
T PRK11629 224 TAELSL 229 (233)
T ss_pred EEEecc
Confidence 998886
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=335.15 Aligned_cols=214 Identities=27% Similarity=0.362 Sum_probs=180.6
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEcc
Confidence 67888887763 23599999999999999999999999999999999998653 4799999998753
Q ss_pred c-----------ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000524 927 Q-----------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG 995 (1444)
Q Consensus 927 ~-----------~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 995 (1444)
. ...++.++|++|++.+++..|++|++.+...... ....+...+.++++++.++|.+..++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 1235578999999988889999999987543211 123334455688999999998776665
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000524 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075 (1444)
Q Consensus 996 ~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~g 1075 (1444)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 4579999999999999999999999999999999999999999999999877999999999986 57788999999986
Q ss_pred cEEEEEcCC
Q 000524 1076 GQEIYVGPL 1084 (1444)
Q Consensus 1076 g~~~y~G~~ 1084 (1444)
|++++.|+.
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 799998875
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=330.18 Aligned_cols=214 Identities=26% Similarity=0.393 Sum_probs=179.3
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++. +.+.+|+|+|+++++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 356777776631 11469999999999999999999999999999999999865 35899999998764
Q ss_pred c--ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000524 927 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 1004 (1444)
Q Consensus 927 ~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1004 (1444)
. ..+++.++|++|++.+++.+|++|++.+....+. ...+...+.++++++.++|.+..++.+ ..||+|||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 3 2345678999999988889999999988654432 223333456889999999988777653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1005 kRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999999875 699999999986 57788999999986 799988875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=341.24 Aligned_cols=218 Identities=20% Similarity=0.293 Sum_probs=180.5
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
++++|+++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEECC
Confidence 67888888774210 0123699999999999999999999999999999999998653 4899999998865
Q ss_pred c-----ccccceEEEEecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCc
Q 000524 927 Q-----ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK--PLIQSLVGLPGVSG 998 (1444)
Q Consensus 927 ~-----~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~ 998 (1444)
. ...++.+||++|++. .....||+|++.|..... ..+.++..+.++++++.+||. +..++. ++.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 134567999999863 233579999998865432 234455556789999999997 555554 467
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 999 lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.||++++|++ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 899999999985 57788999999986 89
Q ss_pred EEEEcCC
Q 000524 1078 EIYVGPL 1084 (1444)
Q Consensus 1078 ~~y~G~~ 1084 (1444)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13637 223 CELQGTP 229 (287)
T ss_pred EEEECCH
Confidence 9999975
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=311.61 Aligned_cols=210 Identities=23% Similarity=0.379 Sum_probs=181.0
Q ss_pred ccceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCcc----ceEEEEcCCCCCC
Q 000524 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHI 238 (1444)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1444)
+++++++|||+.+++||+++++|||||||||...++.|+..|+ +|+|.++|.+++.+... .-+||+||++..|
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 4567999999999999999999999999999999999999998 99999999999887553 3589999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
..+||+|||.-..+.+....+ ..+.+.+.+.+|+.|+|.|+++..-
T Consensus 92 r~LtV~dNi~~vlE~~~~d~~--------------------------------~~~~~~~l~~LL~ef~i~hlr~~~a-- 137 (243)
T COG1137 92 RKLTVEDNIMAVLEIREKDLK--------------------------------KAERKEELDALLEEFHITHLRDSKA-- 137 (243)
T ss_pred hcCcHHHHHHHHHhhhhcchh--------------------------------HHHHHHHHHHHHHHhchHHHhcCcc--
Confidence 999999999876654321000 0112345788999999999998654
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
-.||||||+|+.|||||+.+|+.++||||++|+||-+..+|.+.++.+.. . +.-|+..-|+..|+.+++||.+++
T Consensus 138 ---~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-r-giGvLITDHNVREtL~i~dRaYIi 212 (243)
T COG1137 138 ---YSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-R-GIGVLITDHNVRETLDICDRAYII 212 (243)
T ss_pred ---cccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-C-CceEEEccccHHHHHhhhheEEEE
Confidence 36999999999999999999999999999999999999999999999865 3 444555678889999999999999
Q ss_pred cCCeEEEecChhhHHH
Q 000524 399 SDGQIVYQGPRELVLE 414 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1444)
++|++..+|+++++.+
T Consensus 213 ~~G~vla~G~p~ei~~ 228 (243)
T COG1137 213 SDGKVLAEGSPEEIVN 228 (243)
T ss_pred ecCeEEecCCHHHHhc
Confidence 9999999999998864
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=338.66 Aligned_cols=203 Identities=25% Similarity=0.299 Sum_probs=173.7
Q ss_pred CceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcc---c----ccceEEEEecCCC
Q 000524 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDI 942 (1444)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~q~~~ 942 (1444)
+.+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.... . .++.++|++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 446799999999999999999999999999999999998653 479999999875421 1 1356899999999
Q ss_pred CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEE
Q 000524 943 HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022 (1444)
Q Consensus 943 ~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illL 1022 (1444)
+++.+||+|++.+...... .......+.++++++.++|.+..++.+ ..||||||||++||++|+.+|+||+|
T Consensus 113 ~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8889999999988654321 223344456889999999988777764 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1023 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1023 DEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999998754 899999999986 57888999999985 799998875
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=333.53 Aligned_cols=213 Identities=27% Similarity=0.372 Sum_probs=179.2
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
.++|+++.++. .+.+|+|+|+.|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 67 (242)
T cd03295 2 EFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcCc
Confidence 46777776631 13599999999999999999999999999999999998653 47999999987543
Q ss_pred ---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCcCCHH
Q 000524 928 ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP--LIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 928 ---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~lSgG 1002 (1444)
...++.++|++|++.+++.+||+||+.+....+. .+.+...+.+.++++.++|.+ ..++. ++.||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRY-----PHELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHH
Confidence 2345678999999999999999999988654431 233444556889999999985 55554 4679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEE
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1081 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~ 1081 (1444)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQV 217 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999765 899999999986 57888999999986 799998
Q ss_pred cCC
Q 000524 1082 GPL 1084 (1444)
Q Consensus 1082 G~~ 1084 (1444)
|+.
T Consensus 218 ~~~ 220 (242)
T cd03295 218 GTP 220 (242)
T ss_pred cCH
Confidence 875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=327.67 Aligned_cols=206 Identities=25% Similarity=0.354 Sum_probs=173.3
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
.++|+++.++ +.+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 4677777663 12369999999999999999999999999999999999765 348999999987542
Q ss_pred c------cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000524 928 E------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 1001 (1444)
Q Consensus 928 ~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1001 (1444)
. .+++.++|++|++.+++.+|++|++.+....+. ...+..++.++++++.++|.+..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1 245679999999999999999999988754432 223344556889999999988777653 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |+
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999999999999999999999999999777999999999985 57778999999986 44
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=347.64 Aligned_cols=206 Identities=25% Similarity=0.372 Sum_probs=176.6
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC--ccceEEEEcCCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1444)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 45999999999999999999999999999999999999998 999999999876432 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
|+||+.+.....+... .+....++.+++.+||++..++.++
T Consensus 131 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~~----- 171 (340)
T PRK13536 131 VRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADARVS----- 171 (340)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhCCChh-----
Confidence 9999997654432100 0011234667889999988887765
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
+|||||||||+||+||+++|++++|||||+|||+.++.++.+.|+++.. . +++|+.++|..+++.++||+|++|++|+
T Consensus 172 ~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~-g~tilisSH~l~e~~~~~d~i~il~~G~ 249 (340)
T PRK13536 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLEAGR 249 (340)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999864 3 4455567888999999999999999999
Q ss_pred EEEecChhhHHH
Q 000524 403 IVYQGPRELVLE 414 (1444)
Q Consensus 403 iv~~G~~~~~~~ 414 (1444)
++++|+.+++.+
T Consensus 250 i~~~g~~~~l~~ 261 (340)
T PRK13536 250 KIAEGRPHALID 261 (340)
T ss_pred EEEEcCHHHHHh
Confidence 999999998864
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=329.81 Aligned_cols=210 Identities=28% Similarity=0.405 Sum_probs=175.0
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
+++|+++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 66 (222)
T cd03224 2 EVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDITG 66 (222)
T ss_pred EEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCC
Confidence 5677776652 24699999999999999999999999999999999998653 47999999987543
Q ss_pred c---c-ccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCcCCHH
Q 000524 928 E---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 928 ~---~-~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
. . .++.++|++|++.+++.+|++|++.+....+. .......+.++++.+ ++.+..++. +..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G 136 (222)
T cd03224 67 LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGG 136 (222)
T ss_pred CCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHH
Confidence 2 1 24568999999999999999999988654331 122334567788887 576666655 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 137 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 214 (222)
T cd03224 137 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEG 214 (222)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeC
Confidence 999999999999999999999999999999999999999999877899999999986 57888999999985 7999888
Q ss_pred CC
Q 000524 1083 PL 1084 (1444)
Q Consensus 1083 ~~ 1084 (1444)
+.
T Consensus 215 ~~ 216 (222)
T cd03224 215 TA 216 (222)
T ss_pred CH
Confidence 74
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=328.08 Aligned_cols=200 Identities=29% Similarity=0.420 Sum_probs=167.3
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1444)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 45999999999999999999999999999999999999987 9999999998764332 4579999999988999999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1444)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1444)
+||+.++....+... .+....++.+++.+||++..++.+ ..
T Consensus 90 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (213)
T cd03259 90 AENIAFGLKLRGVPK----------------------------------AEIRARVRELLELVGLEGLLNRYP-----HE 130 (213)
T ss_pred HHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhcCh-----hh
Confidence 999988643221000 001123566788999987766555 46
Q ss_pred cchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000524 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1444)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1444)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|+|++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELG-ITTIYVTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998865334 4555578888889999999999999999
Q ss_pred EEec
Q 000524 404 VYQG 407 (1444)
Q Consensus 404 v~~G 407 (1444)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=332.65 Aligned_cols=212 Identities=26% Similarity=0.338 Sum_probs=178.8
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 46778877663 24699999999999999999999999999999999998653 4799999998764
Q ss_pred cccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000524 927 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 1006 (1444)
Q Consensus 927 ~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkR 1006 (1444)
. ..+.++|++|++.+++.+||+|++.+....+. ....+..+.++++++.++|.+..++. +..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 3 23457999999988888999999987644321 23334455689999999998776665 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEec-CcEEEEEcCC
Q 000524 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGPL 1084 (1444)
Q Consensus 1007 l~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~v~ll~~-gg~~~y~G~~ 1084 (1444)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++.+.||++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999986 67889999999985 5899888765
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=330.07 Aligned_cols=205 Identities=27% Similarity=0.367 Sum_probs=172.1
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc------cceEEEEcCCCCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHIG 239 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~~ 239 (1444)
++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999987 9999999998765321 357999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000524 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1444)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1444)
.+|++||+.+.....+... .+....++.+++.+||++..+..+
T Consensus 96 ~~t~~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 138 (233)
T cd03258 96 SRTVFENVALPLEIAGVPK----------------------------------AEIEERVLELLELVGLEDKADAYP--- 138 (233)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhcCh---
Confidence 9999999988654321100 001123567889999987766544
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc
Q 000524 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1444)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1444)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|++++|+
T Consensus 139 --~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 139 --AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELG-LTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999998765334 455557777888899999999999
Q ss_pred CCeEEEecChhhHH
Q 000524 400 DGQIVYQGPRELVL 413 (1444)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1444)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999887653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=335.57 Aligned_cols=217 Identities=25% Similarity=0.281 Sum_probs=177.6
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhh
Confidence 45777776653 023599999999999999999999999999999999998653 4899999998754
Q ss_pred c------ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000524 927 Q------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL-----PPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG 995 (1444)
Q Consensus 927 ~------~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 995 (1444)
. ..+++.++|++|++.+++.+||+|++.+...... .........++.++++++.++|.+..+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 1245679999999988899999999976421100 00111223345688999999998776665
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 996 ~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
+..||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|++. ++.+.||++++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 57788999999986
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|++++.|+.
T Consensus 222 -G~i~~~~~~ 230 (243)
T TIGR02315 222 -GEIVFDGAP 230 (243)
T ss_pred -CEEEecCCH
Confidence 789988875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=337.08 Aligned_cols=214 Identities=24% Similarity=0.326 Sum_probs=180.3
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
++++|+++.++. ...+|+|+|+++++||++||+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 70 (274)
T PRK13647 5 IEVEDLHFRYKD------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREVN 70 (274)
T ss_pred EEEEEEEEEeCC------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 778898887631 23599999999999999999999999999999999997653 4899999998764
Q ss_pred c---ccccceEEEEecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 927 Q---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 927 ~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
. ...++.+||++|++. .++..||.|++.|..... ....+...+.++++++.++|.+..++.+ ..||||
T Consensus 71 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG 142 (274)
T PRK13647 71 AENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSYG 142 (274)
T ss_pred CCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHH
Confidence 3 223467999999863 345689999998864322 2333444556889999999988777764 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 143 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 220 (274)
T PRK13647 143 QKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAEG 220 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999986 57788999999985 7999999
Q ss_pred CC
Q 000524 1083 PL 1084 (1444)
Q Consensus 1083 ~~ 1084 (1444)
+.
T Consensus 221 ~~ 222 (274)
T PRK13647 221 DK 222 (274)
T ss_pred CH
Confidence 85
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=335.72 Aligned_cols=215 Identities=20% Similarity=0.298 Sum_probs=181.3
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.++|+++.++ ++.+|+|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 378899988763 24699999999999999999999999999999999998653 489999999875
Q ss_pred Ccc------cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000524 926 KQE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 999 (1444)
Q Consensus 926 ~~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~l 999 (1444)
... ..++.++|++|+..+++.+||.|++.+...... ..+.+..++.+.++++.++|.+..+..+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 134568999999988899999999987543221 1223334456788999999988777653 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEE
Q 000524 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1078 (1444)
Q Consensus 1000 SgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~ 1078 (1444)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999985 57888999999985 899
Q ss_pred EEEcCC
Q 000524 1079 IYVGPL 1084 (1444)
Q Consensus 1079 ~y~G~~ 1084 (1444)
++.|+.
T Consensus 223 ~~~g~~ 228 (269)
T PRK11831 223 VAHGSA 228 (269)
T ss_pred EEeCCH
Confidence 999875
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=328.21 Aligned_cols=205 Identities=29% Similarity=0.370 Sum_probs=172.0
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC--ccceEEEEcCCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1444)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 45999999999999999999999999999999999999987 999999998765321 2357999999998999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
|+||+.+..+..+... .+....++.+++.+||++..++.++
T Consensus 90 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 130 (220)
T cd03265 90 GWENLYIHARLYGVPG----------------------------------AERRERIDELLDFVGLLEAADRLVK----- 130 (220)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCChh-----
Confidence 9999998654322100 0011245678999999877776554
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+..+ ++|+.++|+.+++.+.+|++++|++|+
T Consensus 131 ~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG-MTILLTTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 6999999999999999999999999999999999999999999999865334 455668888889999999999999999
Q ss_pred EEEecChhhH
Q 000524 403 IVYQGPRELV 412 (1444)
Q Consensus 403 iv~~G~~~~~ 412 (1444)
+++.|+.+++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999987653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=339.96 Aligned_cols=218 Identities=25% Similarity=0.306 Sum_probs=179.8
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
++++|+++.++... .....+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 67889988874211 0113599999999999999999999999999999999998653 4899999998763
Q ss_pred c-------ccccceEEEEecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000524 927 Q-------ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVS 997 (1444)
Q Consensus 927 ~-------~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 997 (1444)
. ..+++.+|||+|++. .+...||+||+.|..... ..+.++..+.++++++.++|. +..++. +.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 2 234567999999863 233479999998875432 223444455789999999997 555654 46
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCc
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg 1076 (1444)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ ++.+.+|++++|++ |
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-G 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999986 68889999999985 8
Q ss_pred EEEEEcCC
Q 000524 1077 QEIYVGPL 1084 (1444)
Q Consensus 1077 ~~~y~G~~ 1084 (1444)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (290)
T PRK13634 223 TVFLQGTP 230 (290)
T ss_pred EEEEECCH
Confidence 99999975
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=306.36 Aligned_cols=207 Identities=30% Similarity=0.446 Sum_probs=174.5
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCcc---ceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~l 241 (1444)
+.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|++++||++++++.+. +.-+..+|+..+-+..
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 45899999999999999999999999999999999999998 99999999999988764 5668999998887778
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
||+|-+.++..-.+.+.. |. +...+++..|...++.+.+. +..
T Consensus 91 tv~eVV~mGr~p~~~g~~-----------------~~---------------e~~~i~~~ala~~d~~~la~-----R~y 133 (259)
T COG4559 91 TVQEVVQMGRIPHRSGRE-----------------PE---------------EDERIAAQALAATDLSGLAG-----RDY 133 (259)
T ss_pred EHHHHHHhcccccccCCC-----------------ch---------------hhHHHHHHHHHHcChhhhhc-----cch
Confidence 999999998653321110 00 11234566777888877665 334
Q ss_pred cccchhhhhHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeE
Q 000524 322 RGISGGERKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~------~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1444)
+.|||||||||.+||.|+. ++++||||||||+||......+++..|++++. + ..|+.++|+..-+..++|+|
T Consensus 134 ~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g-~~V~~VLHDLNLAA~YaDri 211 (259)
T COG4559 134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-G-GAVLAVLHDLNLAAQYADRI 211 (259)
T ss_pred hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-C-CcEEEEEccchHHHHhhhee
Confidence 6799999999999999975 44689999999999999999999999999974 3 55666889999999999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 000524 396 ILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1444)
++|.+||++..|++++++
T Consensus 212 vll~~Grv~a~g~p~~vl 229 (259)
T COG4559 212 VLLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeeCCeEeecCCHHHhc
Confidence 999999999999998876
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=336.29 Aligned_cols=208 Identities=25% Similarity=0.336 Sum_probs=174.4
Q ss_pred ccceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-------cceEEEEcCCC
Q 000524 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHD 235 (1444)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d 235 (1444)
..+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 3457999999999999999999999999999999999999987 9999999998764321 24699999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccc
Q 000524 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTM 315 (1444)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1444)
.+++.+||+||+.+.....+... .+....++++++.+||++..++.
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 157 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQGVPR----------------------------------AEREERAAEALELVGLEGWEHKY 157 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCC
Confidence 89999999999998654321100 00112356788999998777766
Q ss_pred ccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeE
Q 000524 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1444)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1444)
++ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|++
T Consensus 158 ~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tiii~tH~~~~~~~~~d~v 231 (269)
T cd03294 158 PD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ-KTIVFITHDLDEALRLGDRI 231 (269)
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCEE
Confidence 54 6999999999999999999999999999999999999999999999865334 45555778888899999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 000524 396 ILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1444)
++|++|++++.|+.+++.
T Consensus 232 ~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 232 AIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=324.56 Aligned_cols=208 Identities=32% Similarity=0.473 Sum_probs=175.0
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
.++|+++.++ +..+|+|+|+++++| +++|+||||||||||+++|+|...+ .+|+|.++|.++..
T Consensus 2 ~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCcccc
Confidence 5677776653 236999999999999 9999999999999999999997653 48999999987543
Q ss_pred c--cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000524 928 E--TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 1005 (1444)
Q Consensus 928 ~--~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1005 (1444)
. ..++.++|++|++.+++.+||.|++.+....+. ...++..+.++++++.++|.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHH
Confidence 2 245678999999999999999999988655432 222333456889999999988777653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1006 Rl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999976 599999999986 47778999999986 7887654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=341.92 Aligned_cols=218 Identities=24% Similarity=0.347 Sum_probs=180.2
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.++++|+++.++... .....+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCEEc
Confidence 489999998885210 0123599999999999999999999999999999999998653 489999999775
Q ss_pred Cc-------------------ccccceEEEEecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc
Q 000524 926 KQ-------------------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 984 (1444)
Q Consensus 926 ~~-------------------~~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~ 984 (1444)
.. ..+++.+|||+|++ .+++ .||+||+.|..... ..+.++..+++.++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 13457799999986 3454 59999998864322 223444455788999999996
Q ss_pred -ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHH
Q 000524 985 -PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIF 1063 (1444)
Q Consensus 985 -~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~ 1063 (1444)
+..+.. +..||||||||++|||+|+.+|+||+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455544 4679999999999999999999999999999999999999999999999877999999999986 577
Q ss_pred HhcceEEEEecCcEEEEEcCC
Q 000524 1064 DAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1064 ~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
+.+|++++|++ |++++.|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 88999999986 899999985
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=325.67 Aligned_cols=208 Identities=24% Similarity=0.316 Sum_probs=174.6
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 56788877762 12369999999999999999999999999999999999865 34899999998754
Q ss_pred cc------cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000524 927 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000 (1444)
Q Consensus 927 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1000 (1444)
.. .+++.++|++|++.+++..|++|++.+....+ ....++..+.++++++.+++.+..++. +..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCC
Confidence 21 13567899999998888899999998865443 123334445678899999998876665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEE
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1078 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~ 1078 (1444)
||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++|.|||+++|+++ ++.+.+|++++|++ |++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i 215 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHL 215 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999777899999999986 57778999999986 564
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=338.81 Aligned_cols=218 Identities=25% Similarity=0.388 Sum_probs=176.5
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC-----ccceEEEEcCCCC-CC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-----PERTAAYISQHDN-HI 238 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 238 (1444)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999997 999999999886532 2467999999863 44
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCc--ccccccc
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE--VCADTMV 316 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~v 316 (1444)
..+||+||+.|+....+.. + .+....++++++.+||+ +..|+.
T Consensus 97 ~~~tv~e~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~- 141 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS-E---------------------------------EEIENRVKRAMNIVGLDYEDYKDKS- 141 (287)
T ss_pred ccccHHHHHHhHHHHCCCC-H---------------------------------HHHHHHHHHHHHHcCCCchhhccCC-
Confidence 5689999999865332110 0 01123467789999996 445544
Q ss_pred cCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEE
Q 000524 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1444)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1444)
++.||||||||++||+||+.+|++|+|||||+|||+.++.++.+.|+++++. .+++|+.++|+..++.++||+|+
T Consensus 142 ----~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 142 ----PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 4579999999999999999999999999999999999999999999998653 34556667888889999999999
Q ss_pred EEcCCeEEEecChhhHHH---HHHhcCCCCCC
Q 000524 397 LLSDGQIVYQGPRELVLE---FFESMGFKCPK 425 (1444)
Q Consensus 397 lL~~G~iv~~G~~~~~~~---~F~~~Gf~cp~ 425 (1444)
+|++|+++++|+.+++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988743 23344555443
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=338.14 Aligned_cols=217 Identities=26% Similarity=0.351 Sum_probs=180.0
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++... ...+.+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 57889988874210 0113599999999999999999999999999999999998653 4899999998863
Q ss_pred c-------ccccceEEEEecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000524 927 Q-------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGV 996 (1444)
Q Consensus 927 ~-------~~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 996 (1444)
. ..+++.+||++|++ .+++ .||.|++.|..... ..+.++.++.+.++++.++|. +..+.. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 13456799999986 3444 69999999875432 233455566789999999996 455554 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCc
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg 1076 (1444)
..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.||++++|++ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 679999999999999999999999999999999999999999999999877999999999985 57788999999985 8
Q ss_pred EEEEEcCC
Q 000524 1077 QEIYVGPL 1084 (1444)
Q Consensus 1077 ~~~y~G~~ 1084 (1444)
++++.|+.
T Consensus 221 ~i~~~g~~ 228 (288)
T PRK13643 221 HIISCGTP 228 (288)
T ss_pred EEEEECCH
Confidence 99999986
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=330.59 Aligned_cols=214 Identities=27% Similarity=0.360 Sum_probs=180.6
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 67788877663 24699999999999999999999999999999999998653 4899999998764
Q ss_pred cc----cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 927 QE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 927 ~~----~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
.. ..++.++|++|++..++.+||.||+.+...++. ..+.++.+..++++++.+++.+..+.. .+.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 31 134578999999988888999999987643321 122334456688999999998766654 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
||||++||++|+.+|++|+|||||+|||+.++..+.+.++++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeC
Confidence 999999999999999999999999999999999999999998877999999999985 68889999999985 7999988
Q ss_pred CC
Q 000524 1083 PL 1084 (1444)
Q Consensus 1083 ~~ 1084 (1444)
+.
T Consensus 220 ~~ 221 (241)
T PRK10895 220 TP 221 (241)
T ss_pred CH
Confidence 75
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=327.99 Aligned_cols=217 Identities=24% Similarity=0.294 Sum_probs=172.8
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.+... .....+|+|+|+++++||++||+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5678887776310 001269999999999999999999999999999999999865 34899999998764
Q ss_pred c------ccccceEEEEecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000524 927 Q------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVS 997 (1444)
Q Consensus 927 ~------~~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 997 (1444)
. ..+++.++|++|++ .+.+.+||+||+.+......+. ...+..+..++++++.+++. +..+.. +.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 3 23456799999998 4567899999998765443211 11111122236889999995 455554 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCc
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg 1076 (1444)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999876 899999999986 57778999999985 7
Q ss_pred EEEEEc
Q 000524 1077 QEIYVG 1082 (1444)
Q Consensus 1077 ~~~y~G 1082 (1444)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 877654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=330.72 Aligned_cols=210 Identities=29% Similarity=0.400 Sum_probs=172.3
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1444)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 35999999999999999999999999999999999999887 9999999998764432 3579999999988989999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1444)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1444)
+||+.++....+...+ + +. .+....++.+++.+||++..++.+ ..
T Consensus 92 ~e~l~~~~~~~~~~~~-----------------~--~~-----------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (239)
T cd03296 92 FDNVAFGLRVKPRSER-----------------P--PE-----------AEIRAKVHELLKLVQLDWLADRYP-----AQ 136 (239)
T ss_pred HHHHhhhhhhcccccc-----------------C--CH-----------HHHHHHHHHHHHHcCChhhhhcCh-----hh
Confidence 9999986543211000 0 00 001123567889999987666554 46
Q ss_pred cchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000524 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1444)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1444)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++...+.| |+.++|+..++.+.+|+|++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t-vii~sH~~~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVT-TVFVTHDQEEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 99999999999999999999999999999999999999999999987533444 55577777888999999999999999
Q ss_pred EEecChhhHH
Q 000524 404 VYQGPRELVL 413 (1444)
Q Consensus 404 v~~G~~~~~~ 413 (1444)
++.|+.+++.
T Consensus 216 ~~~~~~~~~~ 225 (239)
T cd03296 216 EQVGTPDEVY 225 (239)
T ss_pred EEecCHHHHh
Confidence 9999987663
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=330.55 Aligned_cols=214 Identities=24% Similarity=0.322 Sum_probs=178.1
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc---eEEEEEEEcCc
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISGY 923 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~ 923 (1444)
+.++|+++.++ +..+|+|+|++|++||+++|+|+||||||||+++|+|...+. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56788887763 235999999999999999999999999999999999976532 12799999998
Q ss_pred cCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCC
Q 000524 924 PKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK----PLIQSLVGLP 994 (1444)
Q Consensus 924 ~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~~ 994 (1444)
+... ...++.++|++|+..+++ .|++||+.+....+. ....++..+.++++++.++|. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 234567999999988888 999999988654431 122334455688999999997 444443
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
+..||||||||++||++|+.+|++|+|||||+|||+.+...+++.|+++++ ++|||+++|++. ++.+.+|++++|++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 467999999999999999999999999999999999999999999999876 489999999986 57788999999996
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|++++.|+.
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 799999875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=331.72 Aligned_cols=214 Identities=20% Similarity=0.272 Sum_probs=180.8
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.++++|+++.++ .+.+|+|+|+.+++||+++|+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 378899988763 24699999999999999999999999999999999998653 479999999865
Q ss_pred Cc----------------ccccceEEEEecCCCCCCCCcHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHHHcCCcccc-
Q 000524 926 KQ----------------ETFARISGYCEQNDIHSPFVTVYESLLYSAW-LRLPPEVDSETRKMFIEEVMELVELKPLI- 987 (1444)
Q Consensus 926 ~~----------------~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~-lr~~~~~~~~~~~~~v~~~l~~l~L~~~~- 987 (1444)
.. ..+++.++|++|++.+++.+||+||+.+... .. .......++.+.++++.+|+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 31 1235678999999999999999999987542 21 123344456788999999998753
Q ss_pred cccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcc
Q 000524 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFD 1067 (1444)
Q Consensus 988 ~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD 1067 (1444)
+.. ...||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+.||
T Consensus 147 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d 220 (257)
T PRK10619 147 GKY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 220 (257)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 443 4679999999999999999999999999999999999999999999999877999999999986 5777899
Q ss_pred eEEEEecCcEEEEEcCC
Q 000524 1068 ELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1068 ~v~ll~~gg~~~y~G~~ 1084 (1444)
++++|++ |++++.|+.
T Consensus 221 ~i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 221 HVIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEEC-CEEEEeCCH
Confidence 9999986 799998875
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=324.63 Aligned_cols=206 Identities=24% Similarity=0.355 Sum_probs=173.3
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
.++|+++.++ ++.+|+++|+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCc
Confidence 5677777663 24699999999999999999999999999999999998653 48999999987632
Q ss_pred -----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 928 -----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 928 -----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
..+++.++|++|++.+++.+|++|++.+...... ....++..+.++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 2345679999999998999999999987643111 1223344556889999999988777653 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |+
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 999999999999999999999999999999999999999999877899999999986 57788999999986 44
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=339.11 Aligned_cols=218 Identities=23% Similarity=0.311 Sum_probs=179.7
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++... .....+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 67889988874210 0113599999999999999999999999999999999998654 4799999986531
Q ss_pred ---------------------------cccccceEEEEecCC-CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 000524 927 ---------------------------QETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 978 (1444)
Q Consensus 927 ---------------------------~~~~~~~~gyv~q~~-~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l 978 (1444)
....++.+|||+|++ ..+...||+|++.|..... ..+.++..+++.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 112456799999985 2344579999998865432 234455566789999
Q ss_pred HHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000524 979 ELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1057 (1444)
Q Consensus 979 ~~l~L~-~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hq 1057 (1444)
+.+||. +..+.. +..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 566655 45799999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1058 PGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1058 ps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
+. ++.+.+|++++|++ |++++.|+.
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 85 57889999999985 799999986
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=336.35 Aligned_cols=215 Identities=26% Similarity=0.379 Sum_probs=181.3
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
-+.++|+++.++ +++.+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 478999998873 12359999999999999999999999999999999999865 3589999999876
Q ss_pred Cc-----ccccceEEEEecCCCC-CCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000524 926 KQ-----ETFARISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 999 (1444)
Q Consensus 926 ~~-----~~~~~~~gyv~q~~~~-~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~l 999 (1444)
.. ..+++.+||++|++.. ....||+|++.+..... ..+.++..+.++++++.++|.+..++. .+.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 31 2345679999999742 34579999998864322 223444456689999999998877766 4679
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEE
Q 000524 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1078 (1444)
Q Consensus 1000 SgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~ 1078 (1444)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.||++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 899999999986 46778999999986 799
Q ss_pred EEEcCC
Q 000524 1079 IYVGPL 1084 (1444)
Q Consensus 1079 ~y~G~~ 1084 (1444)
++.|+.
T Consensus 221 ~~~g~~ 226 (283)
T PRK13636 221 ILQGNP 226 (283)
T ss_pred EEeCCH
Confidence 999986
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=326.65 Aligned_cols=212 Identities=26% Similarity=0.395 Sum_probs=177.0
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcc
Confidence 45777777663 24699999999999999999999999999999999998653 4899999998754
Q ss_pred cc--cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000524 927 QE--TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 1004 (1444)
Q Consensus 927 ~~--~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1004 (1444)
.. ...+.++|++|++.+++.+|++|++.+.+..+ ....+...+.++++++.+||.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 31 22356899999998888999999998765433 1223334456889999999988776653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcC
Q 000524 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083 (1444)
Q Consensus 1005 kRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~ 1083 (1444)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++ ..+|++++|++ |++++.|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999975 5899999999986 35 45999999985 78998887
Q ss_pred C
Q 000524 1084 L 1084 (1444)
Q Consensus 1084 ~ 1084 (1444)
.
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 5
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=325.63 Aligned_cols=199 Identities=26% Similarity=0.420 Sum_probs=164.4
Q ss_pred eEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEEecCCCCC--CCCcH
Q 000524 872 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS--PFVTV 949 (1444)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~--~~lTv 949 (1444)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.. ..++.++|++|++.+. ..+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 4699999999999999999999999999999999998653 4899999998654 2456789999998763 33799
Q ss_pred HHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000524 950 YESLLYSAWLRLPP-EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1444)
Q Consensus 950 ~e~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsg 1028 (1444)
+||+.+....+... ....+..++.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 99998754321100 0112233456889999999987776653 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1029 LD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999999877899999999986 57788999999975 4 56654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=341.46 Aligned_cols=206 Identities=27% Similarity=0.385 Sum_probs=174.0
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC--ccceEEEEcCCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1444)
.++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 45999999999999999999999999999999999999987 999999998875322 2467999999998999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
|+||+.+..+..+... .+....++.+++.+||++..++.++
T Consensus 94 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~l~~~~~~~~~----- 134 (303)
T TIGR01288 94 VRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADVRVA----- 134 (303)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCchh-----
Confidence 9999987543321100 0011234567889999988777664
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ . +++|+.++|..+++.++||+|++|++|+
T Consensus 135 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~til~~sH~~~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLESGR 212 (303)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999864 3 4456667888889999999999999999
Q ss_pred EEEecChhhHHH
Q 000524 403 IVYQGPRELVLE 414 (1444)
Q Consensus 403 iv~~G~~~~~~~ 414 (1444)
+++.|+.+++.+
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=311.18 Aligned_cols=213 Identities=26% Similarity=0.378 Sum_probs=178.9
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
++++|++..| ++.++|++||+++++||+++|+|+|||||||||++|+|.... .+|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecC
Confidence 5667776554 456899999999999999999999999999999999998653 3899999999876
Q ss_pred cc----cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCcCCH
Q 000524 927 QE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKPLIQSLVGLPGVSGLST 1001 (1444)
Q Consensus 927 ~~----~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~lSg 1001 (1444)
.. ..++-++||||....||.+||+|||..++..+.. ++..+..++++.+.+ .|.+.++...| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 52 3456799999999999999999999987655432 112222267788777 47777777754 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEE
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1080 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y 1080 (1444)
||||.++|||||+++|++|+|||||.||-|.-...|.++|+++.++ |.||+.+-+... ...+.+||.++|.+ |++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999866 779998888765 47788999999985 89999
Q ss_pred EcCCC
Q 000524 1081 VGPLG 1085 (1444)
Q Consensus 1081 ~G~~~ 1085 (1444)
.|+..
T Consensus 218 ~G~~~ 222 (237)
T COG0410 218 SGTAA 222 (237)
T ss_pred ecCHH
Confidence 99963
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=337.38 Aligned_cols=217 Identities=21% Similarity=0.329 Sum_probs=179.5
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++... ...+.+|+|||++|++||++||+|+||||||||+++|+|...+ ..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i~ 72 (286)
T PRK13646 3 IRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 67889988874210 0123599999999999999999999999999999999998653 4799999998763
Q ss_pred c-------ccccceEEEEecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000524 927 Q-------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGV 996 (1444)
Q Consensus 927 ~-------~~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 996 (1444)
. ..+++.+|||+|++ .+++ .||.|++.|..... ..+.++..+.++++++.+||. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----P 143 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 13466799999986 3444 59999998865332 233444556789999999996 566654 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecC
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1075 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~g 1075 (1444)
..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~- 221 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE- 221 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 679999999999999999999999999999999999999999999999754 899999999986 57789999999985
Q ss_pred cEEEEEcCC
Q 000524 1076 GQEIYVGPL 1084 (1444)
Q Consensus 1076 g~~~y~G~~ 1084 (1444)
|++++.|+.
T Consensus 222 G~i~~~g~~ 230 (286)
T PRK13646 222 GSIVSQTSP 230 (286)
T ss_pred CEEEEECCH
Confidence 799999875
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=329.79 Aligned_cols=215 Identities=25% Similarity=0.362 Sum_probs=173.4
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1444)
..+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 45999999999999999999999999999999999999987 9999999998765432 2459999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
+||+||+.++....+... ... .. ...+ ..+....++++++.+||++..++.+
T Consensus 90 ~tv~~~l~~~~~~~~~~~-------~~~---~~---~~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (236)
T cd03219 90 LTVLENVMVAAQARTGSG-------LLL---AR---ARRE-----------EREARERAEELLERVGLADLADRPA---- 141 (236)
T ss_pred CCHHHHHHHHHhhccccc-------ccc---cc---cccc-----------HHHHHHHHHHHHHHcCccchhhCCh----
Confidence 999999998754321000 000 00 0000 0011234677899999987666544
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++. .+. +|+.++|+..++.+++|+|++|++
T Consensus 142 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~-tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 142 -GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGI-TVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCC-EEEEEecCHHHHHHhCCEEEEEeC
Confidence 47999999999999999999999999999999999999999999998865 444 455577888889999999999999
Q ss_pred CeEEEecChhhHH
Q 000524 401 GQIVYQGPRELVL 413 (1444)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1444)
|++++.|+++++.
T Consensus 219 G~i~~~~~~~~~~ 231 (236)
T cd03219 219 GRVIAEGTPDEVR 231 (236)
T ss_pred CEEEeecCHHHhc
Confidence 9999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=368.13 Aligned_cols=215 Identities=29% Similarity=0.431 Sum_probs=181.1
Q ss_pred CCceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcC
Q 000524 843 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG 922 (1444)
Q Consensus 843 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g 922 (1444)
....++|+||+|+|+..+ +..+|+|+|+.|++|+.+||+|||||||||++++|.+... +.+|+|.+||
T Consensus 347 ~~g~ief~nV~FsYPsRp----------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG 414 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRP----------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDG 414 (1228)
T ss_pred cccceEEEEEEecCCCCC----------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcC
Confidence 456799999999998643 3579999999999999999999999999999999998765 4689999999
Q ss_pred ccCCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------Cccccccccc
Q 000524 923 YPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE-------LKPLIQSLVG 992 (1444)
Q Consensus 923 ~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg 992 (1444)
.++.. ...+..+|.|.|+|.++ ..|++||+.|+- ++... +.++++.++.+ |.+-.||.+|
T Consensus 415 ~di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G~-----~dat~----~~i~~a~k~ana~~fi~~lp~g~~T~vg 484 (1228)
T KOG0055|consen 415 EDIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYGK-----PDATR----EEIEEAAKAANAHDFILKLPDGYDTLVG 484 (1228)
T ss_pred ccchhcchHHHHhhcCeeeechhhh-cccHHHHHhcCC-----CcccH----HHHHHHHHHccHHHHHHhhHHhhccccc
Confidence 98754 34677899999999877 489999998751 22222 23455555443 5556788888
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000524 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1072 (1444)
Q Consensus 993 ~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll 1072 (1444)
..++. ||||||||++|||||++||+||+||||||+||+++++.|+++|++. .+|+|.|+++|+.| ..+.+|++++|
T Consensus 485 e~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~-~~grTTivVaHRLS--tIrnaD~I~v~ 560 (1228)
T KOG0055|consen 485 ERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKA-SKGRTTIVVAHRLS--TIRNADKIAVM 560 (1228)
T ss_pred CCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHh-hcCCeEEEEeeehh--hhhccCEEEEE
Confidence 87654 9999999999999999999999999999999999999999999886 46999999999986 45559999999
Q ss_pred ecCcEEEEEcCC
Q 000524 1073 KRGGQEIYVGPL 1084 (1444)
Q Consensus 1073 ~~gg~~~y~G~~ 1084 (1444)
++ |+++..|..
T Consensus 561 ~~-G~IvE~G~h 571 (1228)
T KOG0055|consen 561 EE-GKIVEQGTH 571 (1228)
T ss_pred EC-CEEEEecCH
Confidence 96 899999985
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=324.17 Aligned_cols=200 Identities=30% Similarity=0.419 Sum_probs=167.9
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 35899999999999999999999999999999999999887 9999999998764432 3579999999988889999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1444)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1444)
+||+.++.+..+... .+....++.+++.+||++..+..+ +.
T Consensus 90 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (213)
T cd03301 90 YDNIAFGLKLRKVPK----------------------------------DEIDERVREVAELLQIEHLLDRKP-----KQ 130 (213)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhCCh-----hh
Confidence 999988654321100 001123567889999987777655 46
Q ss_pred cchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000524 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1444)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1444)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++...+. +|+.++|..+++.+++|+|++|++|++
T Consensus 131 LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~-tvi~~sH~~~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGT-TTIYVTHDQVEAMTMADRIAVMNDGQI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998753344 455577888889999999999999999
Q ss_pred EEec
Q 000524 404 VYQG 407 (1444)
Q Consensus 404 v~~G 407 (1444)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03301 210 QQIG 213 (213)
T ss_pred EecC
Confidence 9876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=330.40 Aligned_cols=206 Identities=21% Similarity=0.276 Sum_probs=176.5
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.++++|+++.+. ++.+|+|+|+.|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEH
Confidence 488999988874 23599999999999999999999999999999999998653 489999999765
Q ss_pred CcccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000524 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 1005 (1444)
Q Consensus 926 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1005 (1444)
. ..++.++|++|++.+++.+||+|++.+... . ..+..+.++++.++|.+..+.. +..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~----~-----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK----G-----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc----c-----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 3 235678999999988888999999987421 0 1234578899999998876665 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1006 Rl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
|++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ .|+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999986 57788999999986 788888764
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=324.12 Aligned_cols=211 Identities=25% Similarity=0.329 Sum_probs=172.6
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhh
Confidence 4677887776311 0124699999999999999999999999999999999998653 4899999998754
Q ss_pred cc---c---cc-ceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000524 927 QE---T---FA-RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 999 (1444)
Q Consensus 927 ~~---~---~~-~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~l 999 (1444)
.. . ++ +.++|++|++.+++.+|++|++.+....+. .......+.+.++++.+++.+..+..+ ..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 31 1 22 568999999988889999999988654331 122333456789999999987776653 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEE
Q 000524 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1078 (1444)
Q Consensus 1000 SgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~ 1078 (1444)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+ +.+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999999764 899999999986 34 55899999986 665
Q ss_pred E
Q 000524 1079 I 1079 (1444)
Q Consensus 1079 ~ 1079 (1444)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 4
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=325.06 Aligned_cols=201 Identities=28% Similarity=0.380 Sum_probs=168.6
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1444)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++||+|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999887 9999999988763 246799999999888889999
Q ss_pred HHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccccc
Q 000524 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1444)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1444)
||+.++....+... .+....++.+++.+||++..+..+ ..|
T Consensus 92 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------------------------------AEARERAEELLELVGLSGFENAYP-----HQL 132 (220)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc-----ccC
Confidence 99998654322100 001123567889999987666554 469
Q ss_pred chhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc--CCe
Q 000524 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (1444)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~--~G~ 402 (1444)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++....+. +|+.++|..+++.+.+|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~-tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGK-TVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCC-EEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 999999999999999999999999999999999999999999987643344 45557777888899999999999 799
Q ss_pred EEEecChh
Q 000524 403 IVYQGPRE 410 (1444)
Q Consensus 403 iv~~G~~~ 410 (1444)
++..++.+
T Consensus 212 i~~~~~~~ 219 (220)
T cd03293 212 IVAEVEVD 219 (220)
T ss_pred EEEEEEec
Confidence 99988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=335.56 Aligned_cols=224 Identities=26% Similarity=0.372 Sum_probs=179.5
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCC-------CccceEEEEcCCC-CC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF-------VPERTAAYISQHD-NH 237 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d-~~ 237 (1444)
.+|+|+|+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999998 99999999987521 1245799999986 24
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCc-ccccccc
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMV 316 (1444)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (1444)
+...||.||+.|+.+..+... .+...+++++++.+||. ...+.
T Consensus 97 l~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~-- 140 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIPK----------------------------------EKAEKIAAEKLEMVGLADEFWEK-- 140 (288)
T ss_pred cccchHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhccC--
Confidence 445799999998764332100 01122456788899996 34443
Q ss_pred cCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEE
Q 000524 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1444)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1444)
.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.+++|+|+
T Consensus 141 ---~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 141 ---SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-S-GQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred ---CcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEE
Confidence 3457999999999999999999999999999999999999999999998764 3 4456667888889999999999
Q ss_pred EEcCCeEEEecChhhHH---HHHHhcCCCCCCCCChhHHH
Q 000524 397 LLSDGQIVYQGPRELVL---EFFESMGFKCPKRKGVADFL 433 (1444)
Q Consensus 397 lL~~G~iv~~G~~~~~~---~~F~~~Gf~cp~~~~~adfl 433 (1444)
+|++|+++++|+++++. ++++..|+.+|.....++.+
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99999999999998874 34556677776654444433
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=323.13 Aligned_cols=208 Identities=24% Similarity=0.327 Sum_probs=177.1
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccc
Confidence 4667766553 2469999999999999999999999999999999999865 358999999987643
Q ss_pred ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHH
Q 000524 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRL 1007 (1444)
Q Consensus 928 ~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl 1007 (1444)
.. .+.++|++|++.+++.+|++|++.+....+. .. +..+.++++.+++.+..+..+ ..||||||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHH
Confidence 22 2568999999988888999999987654432 11 234788999999998777653 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCCC
Q 000524 1008 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1085 (1444)
Q Consensus 1008 ~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~~ 1085 (1444)
+||++++.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|+..
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 9999999999999999999999999999999999999877999999999986 57789999999985 7999999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=303.00 Aligned_cols=216 Identities=26% Similarity=0.374 Sum_probs=181.4
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
|+.+|++|++. .+.+|++||++++|||++||+|||||||||||++|+|...+ .+|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChh
Confidence 45678888874 35799999999999999999999999999999999998764 4799999999876
Q ss_pred cc---cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000524 927 QE---TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 1003 (1444)
Q Consensus 927 ~~---~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGq 1003 (1444)
+. ...+..+..+|+..+..-.||+|-+.++..-... ....++..+.++++|+..++.+++... ...|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchH
Confidence 53 3456778999998887668999999887422111 112224445688999999999887665 46799999
Q ss_pred HHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 1004 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 1004 rkRl~ia~~L~~------~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
||||.+||.|++ ++++||||||||.||...+..++++.|+++++|..|+|+.||... ....+|||++|++ ||
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-Ce
Confidence 999999999975 356999999999999999999999999999999999999999874 6678999999985 89
Q ss_pred EEEEcCCC
Q 000524 1078 EIYVGPLG 1085 (1444)
Q Consensus 1078 ~~y~G~~~ 1085 (1444)
++..|++.
T Consensus 219 v~a~g~p~ 226 (259)
T COG4559 219 VIASGSPQ 226 (259)
T ss_pred EeecCCHH
Confidence 99999874
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=347.13 Aligned_cols=207 Identities=24% Similarity=0.326 Sum_probs=175.7
Q ss_pred cceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-------cceEEEEcCCCC
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDN 236 (1444)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1444)
...+|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 346899999999999999999999999999999999999997 9999999998865432 247999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccc
Q 000524 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1444)
+++.+||+||+.|+.+..+... .+...+++++++.+||++..+..+
T Consensus 117 l~~~~Tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAGINA----------------------------------EERREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred CCCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhcCc
Confidence 9999999999999765432110 001123567899999987666554
Q ss_pred cCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEE
Q 000524 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1444)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1444)
+.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..+ ++|+.++|+.+++.+++|+|+
T Consensus 163 -----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g-~TIIivTHd~~~~~~~~Dri~ 236 (400)
T PRK10070 163 -----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ-RTIVFISHDLDEAMRIGDRIA 236 (400)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCC-CeEEEEECCHHHHHHhCCEEE
Confidence 47999999999999999999999999999999999999999999998865334 455557888899999999999
Q ss_pred EEcCCeEEEecChhhHH
Q 000524 397 LLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1444)
+|++|++++.|+++++.
T Consensus 237 vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 237 IMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEECCEEEecCCHHHHH
Confidence 99999999999988764
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=325.37 Aligned_cols=201 Identities=25% Similarity=0.335 Sum_probs=166.1
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-------cceEEEEcCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDNH 237 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|+++|+++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999999887 9999999998865432 2469999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccccc
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1444)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1444)
++.+||+||+.+.....+... .+.+.+++.+++.+||++..++.+
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~- 143 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------------------------------AEINSRALEMLAAVGLEHRANHRP- 143 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-
Confidence 999999999998654321100 001123567889999987666554
Q ss_pred CccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEE
Q 000524 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1444)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1444)
+.|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.. +|++++
T Consensus 144 ----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 144 ----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG-TAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHh-hCEEEE
Confidence 46999999999999999999999999999999999999999999998764334 455556777777665 589999
Q ss_pred EcCCeEEEecCh
Q 000524 398 LSDGQIVYQGPR 409 (1444)
Q Consensus 398 L~~G~iv~~G~~ 409 (1444)
|++|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999998864
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=329.47 Aligned_cols=214 Identities=23% Similarity=0.311 Sum_probs=180.1
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
++++|+++.+. .+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 35778887763 23699999999999999999999999999999999998653 4899999998753
Q ss_pred c----------------ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccc
Q 000524 927 Q----------------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990 (1444)
Q Consensus 927 ~----------------~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ 990 (1444)
. ..+++.++|++|++.+++..|+.||+.+..... .....+...+.++++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 2 123567999999999899999999998753221 1123344455688999999998877665
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceE
Q 000524 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDEL 1069 (1444)
Q Consensus 991 vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v 1069 (1444)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++...+|++
T Consensus 144 -----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 -----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred -----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998765 899999999986 577889999
Q ss_pred EEEecCcEEEEEcCC
Q 000524 1070 FLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1070 ~ll~~gg~~~y~G~~ 1084 (1444)
++|++ |++++.|+.
T Consensus 218 ~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 218 CFFDK-GRIVEQGKP 231 (252)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 799998875
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=335.39 Aligned_cols=216 Identities=23% Similarity=0.303 Sum_probs=181.8
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
-++++|+++.++.. ..+.+|+|+|++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 37889998887421 123599999999999999999999999999999999998653 489999999886
Q ss_pred Cc---ccccceEEEEecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000524 926 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 1001 (1444)
Q Consensus 926 ~~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1001 (1444)
.. ...++.+||++|++. .++..||+|++.|..... ..+.++.++.++++++.++|.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234567899999973 567789999998865432 2344455567899999999998777764 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEE
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1080 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y 1080 (1444)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++ ..+|++++|++ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999986 45 67999999985 89999
Q ss_pred EcCC
Q 000524 1081 VGPL 1084 (1444)
Q Consensus 1081 ~G~~ 1084 (1444)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13650 221 TSTP 224 (279)
T ss_pred ECCH
Confidence 9885
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=327.95 Aligned_cols=211 Identities=22% Similarity=0.325 Sum_probs=177.4
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 6 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 70 (237)
T PRK11614 6 LSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDIT 70 (237)
T ss_pred EEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEecC
Confidence 77889888763 23699999999999999999999999999999999998653 4899999998764
Q ss_pred cc----cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCcCCH
Q 000524 927 QE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKPLIQSLVGLPGVSGLST 1001 (1444)
Q Consensus 927 ~~----~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~lSg 1001 (1444)
.. ..++.++|++|+..+++.+||.||+.+..... ..+...+.++++++.+ ++.+..+.. ...|||
T Consensus 71 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 140 (237)
T PRK11614 71 DWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMSG 140 (237)
T ss_pred CCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCCH
Confidence 32 23567999999998899899999998754221 1122234567778887 476655544 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEE
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1081 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~ 1081 (1444)
|||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 141 G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 218 (237)
T PRK11614 141 GEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVLE 218 (237)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999986 68899999999986 799999
Q ss_pred cCC
Q 000524 1082 GPL 1084 (1444)
Q Consensus 1082 G~~ 1084 (1444)
|+.
T Consensus 219 ~~~ 221 (237)
T PRK11614 219 DTG 221 (237)
T ss_pred CCH
Confidence 986
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=323.50 Aligned_cols=193 Identities=25% Similarity=0.366 Sum_probs=163.3
Q ss_pred eEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc---ccccceEEEEecCCC-CCCCC
Q 000524 872 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDI-HSPFV 947 (1444)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~-~~~~l 947 (1444)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 469999999999999999999999999999999999765 348999999987542 234567899999974 35678
Q ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000524 948 TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027 (1444)
Q Consensus 948 Tv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTs 1027 (1444)
|++|++.+....+ .......++.++++++.++|.+..++.+ ..||||||||++|||+|+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998765432 1223333456889999999987766653 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000524 1028 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075 (1444)
Q Consensus 1028 gLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~g 1075 (1444)
|||+.++..+.+.|++++++|+|||+++|++. ++...||++++|++|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999986 577789999999864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=330.81 Aligned_cols=218 Identities=22% Similarity=0.262 Sum_probs=180.2
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
-+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 377888887763 2469999999999999999999999999999999999865 3589999999876
Q ss_pred Ccc---c-ccceEEEEecCCCCCCCCcHHHHHHHHHHhcCC----------C--CCCHHHHHHHHHHHHHHcCCcccccc
Q 000524 926 KQE---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLP----------P--EVDSETRKMFIEEVMELVELKPLIQS 989 (1444)
Q Consensus 926 ~~~---~-~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~----------~--~~~~~~~~~~v~~~l~~l~L~~~~~~ 989 (1444)
... . .+..++|++|++.+++.+||+||+.+....... . .....+....++++++.+++.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 233579999999999999999999886432110 0 00111233467889999999877766
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcce
Q 000524 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDE 1068 (1444)
Q Consensus 990 ~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~ 1068 (1444)
. +..||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |+|||+++|++. ++.+.||+
T Consensus 150 ~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 Q-----AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred C-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 5 3579999999999999999999999999999999999999999999999775 899999999986 67788999
Q ss_pred EEEEecCcEEEEEcCCC
Q 000524 1069 LFLMKRGGQEIYVGPLG 1085 (1444)
Q Consensus 1069 v~ll~~gg~~~y~G~~~ 1085 (1444)
+++|++ |++++.|+..
T Consensus 224 i~~l~~-g~i~~~~~~~ 239 (255)
T PRK11300 224 IYVVNQ-GTPLANGTPE 239 (255)
T ss_pred EEEEEC-CeEEecCCHH
Confidence 999985 7999998863
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=328.27 Aligned_cols=216 Identities=23% Similarity=0.281 Sum_probs=178.6
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc---eEEEEEEEcCc
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISGY 923 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~ 923 (1444)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 4 IEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred EEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 67888887763 245999999999999999999999999999999999976431 35899999998
Q ss_pred cCCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccCCCC
Q 000524 924 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL----IQSLVGLPGV 996 (1444)
Q Consensus 924 ~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~~~~ 996 (1444)
++.. ..+++.+||++|++.+++.+||.||+.+....+.. ....++..+.++++++.++|.+. .++. +
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~ 144 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP-----A 144 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----c
Confidence 7643 23456789999999888899999999886543211 11223344568899999998642 3333 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCc
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg 1076 (1444)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|++. ++.+.+|++++|++ |
T Consensus 145 ~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G 221 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-G 221 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 67999999999999999999999999999999999999999999999864 899999999986 57788999999985 7
Q ss_pred EEEEEcCC
Q 000524 1077 QEIYVGPL 1084 (1444)
Q Consensus 1077 ~~~y~G~~ 1084 (1444)
+++..|+.
T Consensus 222 ~i~~~g~~ 229 (250)
T PRK14247 222 QIVEWGPT 229 (250)
T ss_pred eEEEECCH
Confidence 99998875
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=333.21 Aligned_cols=205 Identities=22% Similarity=0.331 Sum_probs=170.0
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCC-CCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHD-NHIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 240 (1444)
..+|+|+|+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 35899999999999999999999999999999999999997 9999999998865332 35799999997 36778
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
+||+||+.|+.+..+... .+....++.+++.+||++..+..+
T Consensus 97 ~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~---- 138 (279)
T PRK13650 97 ATVEDDVAFGLENKGIPH----------------------------------EEMKERVNEALELVGMQDFKEREP---- 138 (279)
T ss_pred ccHHHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc----
Confidence 899999998754322100 011224577899999987666554
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.| |+.++|..+++ ..+|+|++|++
T Consensus 139 -~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t-ilivtH~~~~~-~~~dri~~l~~ 215 (279)
T PRK13650 139 -ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMT-VISITHDLDEV-ALSDRVLVMKN 215 (279)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCHHHH-HhCCEEEEEEC
Confidence 4799999999999999999999999999999999999999999999986533444 55566777777 58999999999
Q ss_pred CeEEEecChhhHH
Q 000524 401 GQIVYQGPRELVL 413 (1444)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1444)
|+++..|+++++.
T Consensus 216 G~i~~~g~~~~~~ 228 (279)
T PRK13650 216 GQVESTSTPRELF 228 (279)
T ss_pred CEEEEECCHHHHH
Confidence 9999999988765
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=331.19 Aligned_cols=207 Identities=21% Similarity=0.333 Sum_probs=172.0
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc------cceEEEEcCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1444)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 35899999999999999999999999999999999999987 9999999988764321 35699999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+.+||.||+.+......... .. +....++.+++.+||++..+..+
T Consensus 97 ~~~tv~enl~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~-- 141 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQLP---------AP------------------------LLHSTVMMKLEAVGLRGAAKLMP-- 141 (269)
T ss_pred CCCCHHHHHHHHHHHccCCC---------HH------------------------HHHHHHHHHHHHcCChhhhhCCh--
Confidence 99999999988643210000 00 01123466789999988777655
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.... +++|+.++|+.+++.+++|+|++|
T Consensus 142 ---~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d~v~~l 217 (269)
T PRK11831 142 ---SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSAL-GVTCVVVSHDVPEVLSIADHAYIV 217 (269)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHHHHhhCEEEEE
Confidence 4699999999999999999999999999999999999999999999886533 445555778888999999999999
Q ss_pred cCCeEEEecChhhHH
Q 000524 399 SDGQIVYQGPRELVL 413 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1444)
++|++++.|+.+++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 218 ADKKIVAHGSAQALQ 232 (269)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=327.69 Aligned_cols=219 Identities=21% Similarity=0.256 Sum_probs=176.0
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
++++|+++.++ ++.+|+|+|+.|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 35677877763 24699999999999999999999999999999999997411245899999998754
Q ss_pred cc---c-ccceEEEEecCCCCCCCCcHHHHHHHHHHhcCC--C--CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000524 927 QE---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLP--P--EVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVS 997 (1444)
Q Consensus 927 ~~---~-~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~--~--~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 997 (1444)
.. . .+..++|++|++..++.+|++|++.+....... . ..+.++..+.++++++.++|. +..+..++ .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 31 1 123489999999999999999999876432211 0 112233345688999999997 35554431 2
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-cceEEEEecCc
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDA-FDELFLMKRGG 1076 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~-fD~v~ll~~gg 1076 (1444)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++... +|++++|++ |
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G 221 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-G 221 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-C
Confidence 49999999999999999999999999999999999999999999999877899999999986 46666 799999985 7
Q ss_pred EEEEEcCC
Q 000524 1077 QEIYVGPL 1084 (1444)
Q Consensus 1077 ~~~y~G~~ 1084 (1444)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (243)
T TIGR01978 222 RIVKSGDV 229 (243)
T ss_pred EEEEecCH
Confidence 99999875
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=329.41 Aligned_cols=215 Identities=22% Similarity=0.247 Sum_probs=177.0
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 922 (1444)
-+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 478999988773 235999999999999999999999999999999999976532 2479999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK----PLIQSLVGL 993 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 993 (1444)
.++.. ..+++.++|++|++..++ +||+||+.+....+. .......++.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87532 234567999999988774 899999988654321 112233445688899999884 333443
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000524 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1073 (1444)
Q Consensus 994 ~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~ 1073 (1444)
.+.||||||||++|||+|+.+|++|+|||||+|||+.+...+++.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 46899999999999999999999999999999999999999999999996 4799999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000524 1074 RGGQEIYVGPL 1084 (1444)
Q Consensus 1074 ~gg~~~y~G~~ 1084 (1444)
+ |+++..|+.
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 5 899999875
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=327.55 Aligned_cols=205 Identities=22% Similarity=0.365 Sum_probs=171.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1444)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 45999999999999999999999999999999999999987 9999999998754332 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
+||+||+.+.....+.. . .+....++.+++.+||++..++.+
T Consensus 90 ~tv~~~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 131 (232)
T cd03218 90 LTVEENILAVLEIRGLS-K---------------------------------KEREEKLEELLEEFHITHLRKSKA---- 131 (232)
T ss_pred CcHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHHHcCChhhhhCCh----
Confidence 99999998864322110 0 001123567889999987666554
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+ ++|+.++|+.+++.+++|+|++|++
T Consensus 132 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~-~tii~~sH~~~~~~~~~d~i~~l~~ 208 (232)
T cd03218 132 -SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RG-IGVLITDHNVRETLSITDRAYIIYE 208 (232)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998864 34 4555577888899999999999999
Q ss_pred CeEEEecChhhHH
Q 000524 401 GQIVYQGPRELVL 413 (1444)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1444)
|++++.|+.+++.
T Consensus 209 G~i~~~~~~~~~~ 221 (232)
T cd03218 209 GKVLAEGTPEEIA 221 (232)
T ss_pred CeEEEEeCHHHhh
Confidence 9999999987653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=346.15 Aligned_cols=206 Identities=28% Similarity=0.448 Sum_probs=165.9
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1444)
++++|+|+++++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||++..+..+ ++.++||+|+|.+++ -|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GT 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCcccc-cc
Confidence 6899999999999999999999999999999999999987 9999999999887754 589999999996666 59
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
+||||.++..-. +. ++..+++.. ..+.+.+.-+...||.+|+.+ +
T Consensus 411 ireNi~l~~~~~---s~----------------------e~i~~al~~---------a~l~~~v~~p~GLdt~ige~G-~ 455 (559)
T COG4988 411 IRENILLARPDA---SD----------------------EEIIAALDQ---------AGLLEFVPKPDGLDTVIGEGG-A 455 (559)
T ss_pred HHHHhhccCCcC---CH----------------------HHHHHHHHH---------hcHHHhhcCCCcccchhccCC-C
Confidence 999999864210 00 000001000 011222222557789999754 5
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
+|||||+|||++||||+.+++++++||||++||.+|...|.+.|.++++ ++|+++ ++|.. +...-+|+|++|++|+
T Consensus 456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~-itHrl-~~~~~~D~I~vld~G~ 531 (559)
T COG4988 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLV-ITHRL-EDAADADRIVVLDNGR 531 (559)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEE-EEcCh-HHHhcCCEEEEecCCc
Confidence 8999999999999999999999999999999999999999999999874 355555 55543 4566789999999999
Q ss_pred EEEecChhhHHH
Q 000524 403 IVYQGPRELVLE 414 (1444)
Q Consensus 403 iv~~G~~~~~~~ 414 (1444)
++++|.++++.+
T Consensus 532 l~~~g~~~~L~~ 543 (559)
T COG4988 532 LVEQGTHEELSE 543 (559)
T ss_pred eeccCCHHHHhh
Confidence 999999999854
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=339.12 Aligned_cols=205 Identities=27% Similarity=0.383 Sum_probs=176.3
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC--ccceEEEEcCCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1444)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 45999999999999999999999999999999999999998 999999999875432 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
|+||+.+.+++.+... .+....++.+++.+||++..++.++
T Consensus 92 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~----- 132 (301)
T TIGR03522 92 VREYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKIG----- 132 (301)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCchh-----
Confidence 9999998765432110 0011235678999999988876654
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
.|||||||||+||+||+++|++++|||||+|||+.++..+.+.|+++. .+ ++|+.++|..+++.++||+|++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~--~~-~tiii~sH~l~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 133 QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--KD-KTIILSTHIMQEVEAICDRVIIINKGK 209 (301)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc--CC-CEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999874 24 556667888899999999999999999
Q ss_pred EEEecChhhHHH
Q 000524 403 IVYQGPRELVLE 414 (1444)
Q Consensus 403 iv~~G~~~~~~~ 414 (1444)
+++.|+.+++..
T Consensus 210 i~~~g~~~~~~~ 221 (301)
T TIGR03522 210 IVADKKLDELSA 221 (301)
T ss_pred EEEeCCHHHHHH
Confidence 999999998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=337.34 Aligned_cols=206 Identities=22% Similarity=0.323 Sum_probs=170.2
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCC-------CccceEEEEcCCCC-
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF-------VPERTAAYISQHDN- 236 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~- 236 (1444)
.++|+|||+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 45999999999999999999999999999999999999987 99999999987531 11357999999862
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCc-cccccc
Q 000524 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTM 315 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1444)
.+...||+||+.|+.+..+... .+...+++.+++.+||. +..++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVSE----------------------------------EDAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCChhhhhCC
Confidence 3445799999998754322100 01122467789999997 455554
Q ss_pred ccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeE
Q 000524 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1444)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1444)
+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++... +++|+.++|+.+++.+++|+|
T Consensus 143 ~-----~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~-g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 143 P-----FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEK-GLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEE
Confidence 4 5799999999999999999999999999999999999999999999986533 455666888888999999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 000524 396 ILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1444)
++|++|++++.|+.+++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIF 234 (290)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999988764
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=309.97 Aligned_cols=202 Identities=24% Similarity=0.388 Sum_probs=185.4
Q ss_pred CceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEEecCCCCCCCCcH
Q 000524 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTV 949 (1444)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv 949 (1444)
+++.+++|+||.++||++++++|+|||||||++++|.|... +.+|.|.++|.|.++.. +.++||.|.+.-++|.+||
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~tv 89 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEI-KNRIGYLPEERGLYPKMTV 89 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhhh-hhhcccChhhhccCccCcH
Confidence 45789999999999999999999999999999999999876 35899999999987643 4568999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000524 950 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1444)
Q Consensus 950 ~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgL 1029 (1444)
.|.|.|-|.++ .++.++....++..|+.+++....... ++.||-|++|++.+-.+++++|.+++||||.|||
T Consensus 90 ~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfisaviHePeLlILDEPFSGL 161 (300)
T COG4152 90 EDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161 (300)
T ss_pred HHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCC
Confidence 99999999987 456677777899999999999888776 4689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1030 DARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1030 D~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
||.+.+.+-+.+.++.++|.|||+++|+.+ .+-++||++++|++ |+.|..|+.
T Consensus 162 DPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v 214 (300)
T COG4152 162 DPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV 214 (300)
T ss_pred ChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH
Confidence 999999999999999999999999999997 69999999999986 799999986
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=327.73 Aligned_cols=204 Identities=24% Similarity=0.348 Sum_probs=168.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCC-----CCCCCeecEEEECCccCCCCC-----ccceEEEEcCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL-----DSSLKVSGRVTYNGHDMGEFV-----PERTAAYISQH 234 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l-----~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~ 234 (1444)
+++|+|+|+.+++|++++|+||||||||||+++|+|.+ +|. +|+|.++|+++.... .++.++|++|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 35999999999999999999999999999999999999 776 999999999875432 24579999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccc
Q 000524 235 DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT 314 (1444)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1444)
+.++ .+||+||+.++.+..+.... .+....++++++.+||.+..+.
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~ 135 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGIKLK---------------------------------EELDERVEEALRKAALWDEVKD 135 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCChHHhc
Confidence 8877 79999999986543211000 0011235678899999876655
Q ss_pred cccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCe
Q 000524 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1444)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1444)
.+. +..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ + ++|+.++|+.+++.+++|+
T Consensus 136 ~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~ 209 (227)
T cd03260 136 RLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADR 209 (227)
T ss_pred cCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCE
Confidence 431 357999999999999999999999999999999999999999999999864 2 5566678888889999999
Q ss_pred EEEEcCCeEEEecChhh
Q 000524 395 IILLSDGQIVYQGPREL 411 (1444)
Q Consensus 395 vilL~~G~iv~~G~~~~ 411 (1444)
+++|++|++++.|+.++
T Consensus 210 i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 210 TAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEeCCEEEEecCccc
Confidence 99999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=333.24 Aligned_cols=213 Identities=22% Similarity=0.304 Sum_probs=178.8
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
++++|+++.++ +++.+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 56778877663 12359999999999999999999999999999999999865 35899999998764
Q ss_pred c----ccccceEEEEecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000524 927 Q----ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 1001 (1444)
Q Consensus 927 ~----~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1001 (1444)
. ...++.+||++|++. .+...|+.||+.|..... ..+....++.++++++.++|.+..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 3 234567999999975 356689999998765432 1234444566889999999988777663 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEE
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1081 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~ 1081 (1444)
|||||++||+||+.+|+||+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++ ..+|++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 45 67999999986 799999
Q ss_pred cCC
Q 000524 1082 GPL 1084 (1444)
Q Consensus 1082 G~~ 1084 (1444)
|+.
T Consensus 217 g~~ 219 (274)
T PRK13644 217 GEP 219 (274)
T ss_pred CCH
Confidence 985
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=328.96 Aligned_cols=220 Identities=23% Similarity=0.253 Sum_probs=178.6
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc---eEEEEEEEcCc
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISGY 923 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~ 923 (1444)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 5 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~ 71 (253)
T PRK14267 5 IETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGR 71 (253)
T ss_pred EEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 67889888763 235999999999999999999999999999999999986532 34899999998
Q ss_pred cCC--c---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000524 924 PKK--Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 998 (1444)
Q Consensus 924 ~~~--~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 998 (1444)
++. . ..+++.++|++|++.+++.+||.||+.+....+.. ....+..++.++++++.+++.+...... ......
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 149 (253)
T PRK14267 72 NIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRL-NDYPSN 149 (253)
T ss_pred EccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhh-ccChhh
Confidence 764 1 23456799999999999999999999886543311 1123334456788999999853211111 112467
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEE
Q 000524 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1078 (1444)
Q Consensus 999 lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~ 1078 (1444)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 150 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i 226 (253)
T PRK14267 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYL-GKL 226 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 699999999986 57888999999986 799
Q ss_pred EEEcCC
Q 000524 1079 IYVGPL 1084 (1444)
Q Consensus 1079 ~y~G~~ 1084 (1444)
++.|+.
T Consensus 227 ~~~~~~ 232 (253)
T PRK14267 227 IEVGPT 232 (253)
T ss_pred EEeCCH
Confidence 999885
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=326.85 Aligned_cols=213 Identities=24% Similarity=0.329 Sum_probs=179.1
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecc
Confidence 67888887763 23599999999999999999999999999999999998653 5899999998652
Q ss_pred ------c---ccccceEEEEecCCCCCCCCcHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000524 927 ------Q---ETFARISGYCEQNDIHSPFVTVYESLLYS-AWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 996 (1444)
Q Consensus 927 ------~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~-a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1444)
. ...++.++|++|++.+++.+||.|++.+. .... ....++....+.++++.+|+.+..++.+
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP----- 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 0 12345789999999999999999999653 2221 1223334456889999999988777653
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCc
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg 1076 (1444)
..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g 217 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999777999999999986 57788999999985 8
Q ss_pred EEEEEcCC
Q 000524 1077 QEIYVGPL 1084 (1444)
Q Consensus 1077 ~~~y~G~~ 1084 (1444)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (242)
T PRK11124 218 HIVEQGDA 225 (242)
T ss_pred EEEEeCCH
Confidence 99999875
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=337.91 Aligned_cols=229 Identities=21% Similarity=0.244 Sum_probs=184.4
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
-+.++|++.+++............+...+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 478899887775321000000001235799999999999999999999999999999999998653 489999999876
Q ss_pred Ccc------cccceEEEEecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000524 926 KQE------TFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGV 996 (1444)
Q Consensus 926 ~~~------~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 996 (1444)
... .+++.++||+|++ .++|.+||.|++.+......+ ..+.++.++.+.++++.++|. +..++. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 431 2456799999997 578899999999886543221 234455666788999999995 344554 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecC
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1075 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~g 1075 (1444)
..||||||||++||+||+.+|++|++||||+|||..++..|++.|+++.++ |.|||+++|++. .+.+.+|++++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 679999999999999999999999999999999999999999999999765 899999999986 57778999999985
Q ss_pred cEEEEEcCC
Q 000524 1076 GQEIYVGPL 1084 (1444)
Q Consensus 1076 g~~~y~G~~ 1084 (1444)
|+++..|+.
T Consensus 238 G~ive~g~~ 246 (331)
T PRK15079 238 GHAVELGTY 246 (331)
T ss_pred CEEEEEcCH
Confidence 899999985
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=329.12 Aligned_cols=214 Identities=24% Similarity=0.297 Sum_probs=177.4
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 922 (1444)
.++++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 588899987763 235999999999999999999999999999999999976431 2589999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 993 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1444)
.++.. ..+++.++|++|++.+++ +|++||+.+....+ ....+..++.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 124567999999988887 89999998875432 1233334456888999999853 23333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000524 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1073 (1444)
Q Consensus 994 ~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~ 1073 (1444)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|++. ++.+.+|++++|+
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 467999999999999999999999999999999999999999999999864 899999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000524 1074 RGGQEIYVGPL 1084 (1444)
Q Consensus 1074 ~gg~~~y~G~~ 1084 (1444)
+ |++++.|+.
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 5 899999875
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=312.12 Aligned_cols=206 Identities=27% Similarity=0.379 Sum_probs=179.5
Q ss_pred CceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCccc----ccceEEEEecCCCCCC
Q 000524 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET----FARISGYCEQNDIHSP 945 (1444)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~q~~~~~~ 945 (1444)
+...+++|||+++++||++||+||||||||||+|+|+|...+ .+|+|.++|.++.... .+.-++--+|...+|+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 456899999999999999999999999999999999998764 4899999999876432 3445788899999999
Q ss_pred CCcHHHHHHHHHHhcC--------CCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhC
Q 000524 946 FVTVYESLLYSAWLRL--------PPE-VDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVAN 1016 (1444)
Q Consensus 946 ~lTv~e~l~f~a~lr~--------~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~ 1016 (1444)
.+||.||+..++..+. +.. ...++..++..++|+.+||.+.+|...| +||+||||||.|||||+.+
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 9999999998755331 111 1234455678899999999999999865 6999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1017 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1017 p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
|++|+||||.+||.+.....+.+.|+++.++ |.||+++-|+.+ -++.+||||++|+. |+++..|++
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P 234 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTP 234 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCH
Confidence 9999999999999999999999999999874 799999999997 49999999999996 899999987
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=371.23 Aligned_cols=207 Identities=26% Similarity=0.390 Sum_probs=167.4
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1444)
+++|+|+|++++||+.++|+||||||||||+++|+|.+ |. +|+|.+||+++.+..+ ++.++||+|++.+|. .
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~ 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-G 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCC-c
Confidence 35899999999999999999999999999999999999 76 8999999999987754 478999999987765 5
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
|++|||.++.. +.+.++..+++...+ .++.++ .|++..||.||+.+
T Consensus 438 TI~eNI~~g~~-------------------------~~~~eei~~al~~a~------l~~~i~--~lp~G~dT~vge~G- 483 (588)
T PRK11174 438 TLRDNVLLGNP-------------------------DASDEQLQQALENAW------VSEFLP--LLPQGLDTPIGDQA- 483 (588)
T ss_pred CHHHHhhcCCC-------------------------CCCHHHHHHHHHHhC------HHHHHH--hcccccccccccCC-
Confidence 99999998631 111111222211111 122222 46777899999875
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
..||||||||++||||++++|++|+||||||+||+.++..|.+.|+++. .++|+|+..|++ ++.+.+|+|++|++|
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iivl~~G 559 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWVMQDG 559 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEEEeCC
Confidence 4699999999999999999999999999999999999999999998864 356666644443 566789999999999
Q ss_pred eEEEecChhhHHH
Q 000524 402 QIVYQGPRELVLE 414 (1444)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1444)
+++++|+++++.+
T Consensus 560 ~i~e~G~~~eL~~ 572 (588)
T PRK11174 560 QIVQQGDYAELSQ 572 (588)
T ss_pred eEeecCCHHHHHh
Confidence 9999999999864
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=341.13 Aligned_cols=212 Identities=27% Similarity=0.421 Sum_probs=179.9
Q ss_pred CCceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcC
Q 000524 843 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG 922 (1444)
Q Consensus 843 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g 922 (1444)
.+..++|+||.+++. +++++|+++||+|++||.+||+|+|||||||++++|.+... .+|+|.|||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 345699999999985 23459999999999999999999999999999999998654 379999999
Q ss_pred ccCCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------ccccccc
Q 000524 923 YPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-------LIQSLVG 992 (1444)
Q Consensus 923 ~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg 992 (1444)
+++++ +..|+.+||||||..++ +-||.+|+.|+. .+.+.+ .|-++.+..++.+ -.+|.||
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn-----~sas~e----eV~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGN-----PSASDE----EVVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCC-----CCcCHH----HHHHHHHHcCcHHHHHhccccchhhHh
Confidence 98654 46788999999998887 479999999862 233333 3667777777655 4456677
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000524 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1072 (1444)
Q Consensus 993 ~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll 1072 (1444)
..| .-|||||||||+||||++++|+|+++|||||.||++|+..+++.+++. ..|+|+|++.|+. ++...||+|++|
T Consensus 483 erG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l 558 (591)
T KOG0057|consen 483 ERG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVL 558 (591)
T ss_pred hcc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEE
Confidence 765 469999999999999999999999999999999999999999999994 4589999999995 588999999999
Q ss_pred ecCcEEEEEcCC
Q 000524 1073 KRGGQEIYVGPL 1084 (1444)
Q Consensus 1073 ~~gg~~~y~G~~ 1084 (1444)
++ |++...|+-
T Consensus 559 ~n-G~v~e~gth 569 (591)
T KOG0057|consen 559 DN-GTVKEYGTH 569 (591)
T ss_pred EC-CeeEEeccH
Confidence 96 789999885
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=332.71 Aligned_cols=214 Identities=24% Similarity=0.352 Sum_probs=180.2
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++. ...+|+|||+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 678888877631 2349999999999999999999999999999999999865 35899999998764
Q ss_pred c---ccccceEEEEecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 927 Q---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 927 ~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
. ...++.+||++|++. .+...||.|++.+..... ..+.+...+.++++++.++|.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567899999974 334579999998765432 2334444566899999999988777764 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEE
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1081 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~ 1081 (1444)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999875 899999999986 67889999999986 799999
Q ss_pred cCC
Q 000524 1082 GPL 1084 (1444)
Q Consensus 1082 G~~ 1084 (1444)
|+.
T Consensus 220 g~~ 222 (277)
T PRK13652 220 GTV 222 (277)
T ss_pred CCH
Confidence 985
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=334.33 Aligned_cols=218 Identities=24% Similarity=0.305 Sum_probs=179.2
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.+.... ...+.+|+|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 72 (287)
T PRK13641 3 IKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHIT 72 (287)
T ss_pred EEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 67888887764110 0013599999999999999999999999999999999998653 5899999998753
Q ss_pred c-------ccccceEEEEecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000524 927 Q-------ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVS 997 (1444)
Q Consensus 927 ~-------~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 997 (1444)
. ...++.+||++|++. .+..+||.|++.|..... ....++..+.++++++.++|. +..++. ++
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (287)
T PRK13641 73 PETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----PF 144 (287)
T ss_pred cccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----cc
Confidence 2 123457899999963 233589999998765432 223444556789999999997 566665 45
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|++. ++.+.||++++|++ |+
T Consensus 145 ~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~ 222 (287)
T PRK13641 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-GK 222 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999777999999999986 57889999999986 89
Q ss_pred EEEEcCC
Q 000524 1078 EIYVGPL 1084 (1444)
Q Consensus 1078 ~~y~G~~ 1084 (1444)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13641 223 LIKHASP 229 (287)
T ss_pred EEEeCCH
Confidence 9999875
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=342.93 Aligned_cols=208 Identities=25% Similarity=0.308 Sum_probs=175.6
Q ss_pred ccceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCc----cCCCCCc-------cceEEEE
Q 000524 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH----DMGEFVP-------ERTAAYI 231 (1444)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~----~~~~~~~-------~~~~~yv 231 (1444)
....+|+|+|+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+ ++..... ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 4567999999999999999999999999999999999999997 999999996 3433221 2469999
Q ss_pred cCCCCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccc
Q 000524 232 SQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVC 311 (1444)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1444)
+|++.+++.+||+||+.++....+... .+.+..++++++.+||++.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchh
Confidence 999999999999999999865432110 0012245778999999887
Q ss_pred ccccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhh
Q 000524 312 ADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL 391 (1444)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~ 391 (1444)
.|..++ .|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+ ++|+.++|+.+++.++
T Consensus 158 ~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~-~TII~iTHdl~e~~~l 231 (382)
T TIGR03415 158 ADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLN-KTIIFVSHDLDEALKI 231 (382)
T ss_pred hcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHh
Confidence 776554 6999999999999999999999999999999999999999999998865334 5555588889999999
Q ss_pred cCeEEEEcCCeEEEecChhhHH
Q 000524 392 FDDIILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 392 fD~vilL~~G~iv~~G~~~~~~ 413 (1444)
+|+|++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=318.11 Aligned_cols=180 Identities=46% Similarity=0.787 Sum_probs=156.2
Q ss_pred ccceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCeecEEEECCccCCCCC--ccceEEEEcCCCCC
Q 000524 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD---SSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNH 237 (1444)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~---~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~ 237 (1444)
.++.+|+|+|+.+++|++++|+|||||||||||++|+|.++ |+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~---~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~ 94 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV---EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH 94 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc---ceEEEECCEECccchhhhcceEEEEeccccc
Confidence 34579999999999999999999999999999999999998 55 999999999876532 24679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccccc
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1444)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1444)
++.+||+||+.++.+.. .
T Consensus 95 ~~~~tv~~~l~~~~~~~--------------------------------------------------------------~ 112 (202)
T cd03233 95 FPTLTVRETLDFALRCK--------------------------------------------------------------G 112 (202)
T ss_pred CCCCcHHHHHhhhhhhc--------------------------------------------------------------c
Confidence 99999999998753210 1
Q ss_pred CccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEE
Q 000524 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1444)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1444)
+..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+..+.++|++.||+.+++.+.+|++++
T Consensus 113 ~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 113 NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence 12234699999999999999999999999999999999999999999999986544567788788888899999999999
Q ss_pred EcCCeEEEec
Q 000524 398 LSDGQIVYQG 407 (1444)
Q Consensus 398 L~~G~iv~~G 407 (1444)
|++|++++.|
T Consensus 193 l~~G~i~~~g 202 (202)
T cd03233 193 LYEGRQIYYG 202 (202)
T ss_pred EECCEEEecC
Confidence 9999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=337.86 Aligned_cols=214 Identities=22% Similarity=0.250 Sum_probs=175.9
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-------cceEEEEcCCC--
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHD-- 235 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d-- 235 (1444)
..+|+|||+.|++||+++|+|+||||||||+++|+|.++|+...+|+|.++|.++..... ++.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 569999999999999999999999999999999999998742348999999999865432 14799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccc
Q 000524 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTM 315 (1444)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1444)
.+.+.+||.+++.+.......... .+...++.++++.+||++..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~~---------------------------------~~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMSK---------------------------------AEAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCH---------------------------------HHHHHHHHHHHHHcCCCChHHH-
Confidence 688999999999876433210000 0112345677889999764332
Q ss_pred ccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeE
Q 000524 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1444)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1444)
. +..++.|||||||||+||+||+.+|++|++||||+|||..++.+|.+.|+++.+. .+++++.++|+...+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCCEE
Confidence 2 3566789999999999999999999999999999999999999999999998754 3556666889999999999999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 000524 396 ILLSDGQIVYQGPRELVLE 414 (1444)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1444)
++|++|+|++.|+.+++.+
T Consensus 233 ~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999988853
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=316.56 Aligned_cols=196 Identities=30% Similarity=0.575 Sum_probs=164.6
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc-eEEEEEEEcCcc
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITISGYP 924 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 924 (1444)
.+.|+|++|.++.+. +++.+|+|+|+.+++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~---------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKGR---------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccCC---------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 578999999987431 3457999999999999999999999999999999999986522 468999999987
Q ss_pred CCc--ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 925 KKQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 925 ~~~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
... ...++.++|++|++.+++.+||+|++.+.+..+ .+.. ...||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234567899999999999999999998753211 1222 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEE
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1081 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~ 1081 (1444)
||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ ++|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 678787777654578899999999986 788876
Q ss_pred c
Q 000524 1082 G 1082 (1444)
Q Consensus 1082 G 1082 (1444)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 5
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=324.53 Aligned_cols=203 Identities=29% Similarity=0.410 Sum_probs=170.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC--ccceEEEEcCCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1444)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 45999999999999999999999999999999999999987 999999999875421 2356999999998888999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
|+||+.+..+..+.... +....++++++.+||++..++.++
T Consensus 92 v~~~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~~~----- 132 (220)
T cd03263 92 VREHLRFYARLKGLPKS----------------------------------EIKEEVELLLRVLGLTDKANKRAR----- 132 (220)
T ss_pred HHHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHcCCHHHHhChhh-----
Confidence 99999886543321000 011235677889999877776554
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++++. + .+|+.++|+.+++.+.+|++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998753 3 556667788888889999999999999
Q ss_pred EEEecChhhH
Q 000524 403 IVYQGPRELV 412 (1444)
Q Consensus 403 iv~~G~~~~~ 412 (1444)
+++.|+.+++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988754
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=323.98 Aligned_cols=203 Identities=24% Similarity=0.397 Sum_probs=167.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 35999999999999999999999999999999999999987 9999999988765432 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHh-CCcccccccccCc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLEVCADTMVGDE 319 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 319 (1444)
+|++||+.++....+ . .+ ....++.+++.+ ++++..++.+
T Consensus 90 ~t~~~~l~~~~~~~~--~-----~~-----------------------------~~~~~~~~l~~~~~l~~~~~~~~--- 130 (222)
T cd03224 90 LTVEENLLLGAYARR--R-----AK-----------------------------RKARLERVYELFPRLKERRKQLA--- 130 (222)
T ss_pred CcHHHHHHHHhhhcC--c-----hh-----------------------------HHHHHHHHHHHHHhhhhhhhCch---
Confidence 999999988653221 0 00 011234456666 4665555444
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc
Q 000524 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1444)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1444)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++. . +++|+.++|+..++.+++|+|++|+
T Consensus 131 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~ 206 (222)
T cd03224 131 --GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-E-GVTILLVEQNARFALEIADRAYVLE 206 (222)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhccEEEEee
Confidence 46999999999999999999999999999999999999999999998864 3 4455557788888999999999999
Q ss_pred CCeEEEecChhhHH
Q 000524 400 DGQIVYQGPRELVL 413 (1444)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1444)
+|++++.|+.+++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (222)
T cd03224 207 RGRVVLEGTAAELL 220 (222)
T ss_pred CCeEEEeCCHHHHh
Confidence 99999999987653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=322.63 Aligned_cols=198 Identities=30% Similarity=0.432 Sum_probs=166.2
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC--ccceEEEEcCCCCCCCCCCH
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMTV 243 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1444)
++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999999987 999999999876421 24679999999988999999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1444)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1444)
+||+.+..+..+... .+....++++++.+||++..+..+ +.
T Consensus 96 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (218)
T cd03266 96 RENLEYFAGLYGLKG----------------------------------DELTARLEELADRLGMEELLDRRV-----GG 136 (218)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhhhh-----hh
Confidence 999987643321100 001224567889999987776554 46
Q ss_pred cchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000524 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1444)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1444)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.. .+ .+|+.++|+.+++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LG-KCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 34 4555577888889999999999999999
Q ss_pred EEec
Q 000524 404 VYQG 407 (1444)
Q Consensus 404 v~~G 407 (1444)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=327.72 Aligned_cols=214 Identities=29% Similarity=0.401 Sum_probs=172.1
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC------ccceEEEEcCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV------PERTAAYISQHDNHI 238 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 45999999999999999999999999999999999999887 999999999876543 135799999999899
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+.+||+||+.++..... .. .... .+..+ ......++.+++.+||.+..++.+
T Consensus 91 ~~~tv~~~l~~~~~~~~--~~---~~~~------~~~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~-- 142 (241)
T cd03256 91 ERLSVLENVLSGRLGRR--ST---WRSL------FGLFP---------------KEEKQRALAALERVGLLDKAYQRA-- 142 (241)
T ss_pred ccCcHHHHHHhhhcccc--hh---hhhh------cccCc---------------HHHHHHHHHHHHHcCChhhhCCCc--
Confidence 99999999987542110 00 0000 00000 001223567789999987666544
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|++++|
T Consensus 143 ---~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 143 ---DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG-ITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999999865334 45555778888899999999999
Q ss_pred cCCeEEEecChhhHH
Q 000524 399 SDGQIVYQGPRELVL 413 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1444)
++|++++.|+.+++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=324.57 Aligned_cols=195 Identities=25% Similarity=0.371 Sum_probs=163.6
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC------ccceEEEEcCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV------PERTAAYISQHDNHI 238 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1444)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 35999999999999999999999999999999999999987 999999999875432 235799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+.+||+||+.++.+..+... .+....++.+++.+||++..+..+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 136 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVPP----------------------------------RDANERVSAALEKVGLEGKAHALP-- 136 (216)
T ss_pred ccccHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh--
Confidence 99999999998754322100 001123567889999987766554
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+ ++|+.++|+.+++.+++|+|++|
T Consensus 137 ---~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~vsH~~~~~~~~~d~i~~l 211 (216)
T TIGR00960 137 ---MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RG-TTVLVATHDINLVETYRHRTLTL 211 (216)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999998854 34 45566788888899999999999
Q ss_pred cCCeE
Q 000524 399 SDGQI 403 (1444)
Q Consensus 399 ~~G~i 403 (1444)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99975
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=328.77 Aligned_cols=213 Identities=25% Similarity=0.353 Sum_probs=178.5
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++ ++.+|+|+|+++++|++++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 56788887763 2469999999999999999999999999999999999865 35899999998754
Q ss_pred c---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000524 927 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 1003 (1444)
Q Consensus 927 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGq 1003 (1444)
. ...++.++|++|++.+++.+||+|++.+..... ....+..++.++++++.++|.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 223456899999988878899999998754321 1112233456789999999988777764 5799999
Q ss_pred HHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhcceEEEEecCc
Q 000524 1004 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 1004 rkRl~ia~~L~------~~p~illLDEPTsgLD~~s~~~i~~~l~~~~-~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg 1076 (1444)
|||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||+++|++. ++.+.+|++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999997 56899999999986 57789999999986 7
Q ss_pred EEEEEcCC
Q 000524 1077 QEIYVGPL 1084 (1444)
Q Consensus 1077 ~~~y~G~~ 1084 (1444)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (258)
T PRK13548 218 RLVADGTP 225 (258)
T ss_pred EEEeeCCH
Confidence 99998875
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=319.95 Aligned_cols=194 Identities=25% Similarity=0.329 Sum_probs=164.4
Q ss_pred ccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcc-cccceEEEEecCCCCCCCCcHHHHHHH
Q 000524 877 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLLY 955 (1444)
Q Consensus 877 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f 955 (1444)
|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999865 3489999999876432 234678999999998899999999987
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 000524 956 SAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035 (1444)
Q Consensus 956 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~ 1035 (1444)
....+.. . .+..++.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||..++.
T Consensus 94 ~~~~~~~--~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGLK--L-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred ccccccC--c-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 5432211 1 1233456889999999988777763 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1036 IVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1036 ~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
.+++.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 999999998754 899999999986 57788999999986 7877653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=325.36 Aligned_cols=215 Identities=26% Similarity=0.317 Sum_probs=178.2
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++ .+.+|+|+|+++++||+++|+|+|||||||||++|+|...+ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecC
Confidence 56788877663 24699999999999999999999999999999999998653 4799999998754
Q ss_pred cc----cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCC--C---CCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000524 927 QE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP--P---EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997 (1444)
Q Consensus 927 ~~----~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~--~---~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1444)
.. ..++.++|++|++.+++.+||+||+.+....... . ....+..+..++++++.+++.+..+.. ++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AG 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hh
Confidence 31 1234699999999999999999999876432110 0 011223445689999999998877665 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.||++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999875 799999999986 57788999999986 78
Q ss_pred EEEEcCC
Q 000524 1078 EIYVGPL 1084 (1444)
Q Consensus 1078 ~~y~G~~ 1084 (1444)
++..|+.
T Consensus 220 ~~~~~~~ 226 (242)
T TIGR03411 220 VLAEGSL 226 (242)
T ss_pred EEeeCCH
Confidence 9988875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=321.38 Aligned_cols=198 Identities=25% Similarity=0.383 Sum_probs=166.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1444)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 45999999999999999999999999999999999999887 9999999988754 2356799999999889999999
Q ss_pred HHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccccc
Q 000524 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1444)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1444)
||+.+..+..+... .+....++++++.+||++..++.+ +.|
T Consensus 89 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 129 (210)
T cd03269 89 DQLVYLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKRV-----EEL 129 (210)
T ss_pred HHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCcH-----hhC
Confidence 99988654322100 001123567889999987776554 469
Q ss_pred chhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeEE
Q 000524 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1444)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv 404 (1444)
||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.+ .+ .+|+.++|+..++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~-~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AG-KTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999998764 34 45566788888899999999999999998
Q ss_pred Eec
Q 000524 405 YQG 407 (1444)
Q Consensus 405 ~~G 407 (1444)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 765
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=326.80 Aligned_cols=206 Identities=26% Similarity=0.387 Sum_probs=171.2
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1444)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 45999999999999999999999999999999999999987 9999999998765332 35789999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcc--cccccccCc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV--CADTMVGDE 319 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~~ 319 (1444)
||+||+.++.+..+... .+....++++++.+||++ ..++
T Consensus 91 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~l~~~~~~~~----- 131 (242)
T cd03295 91 TVEENIALVPKLLKWPK----------------------------------EKIRERADELLALVGLDPAEFADR----- 131 (242)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcHHHHhc-----
Confidence 99999998654321100 001123567789999985 4444
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc
Q 000524 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1444)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1444)
.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|+|++|+
T Consensus 132 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g-~tvii~sH~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 132 YPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELG-KTIVFVTHDIDEAFRLADRIAIMK 210 (242)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhCCEEEEEE
Confidence 3457999999999999999999999999999999999999999999999865334 455557777888899999999999
Q ss_pred CCeEEEecChhhHH
Q 000524 400 DGQIVYQGPRELVL 413 (1444)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1444)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999887663
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=358.93 Aligned_cols=209 Identities=27% Similarity=0.386 Sum_probs=178.8
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..++|+||+|+|+. +++.+|+|+|++|+|||++||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEE
Confidence 36999999999852 124699999999999999999999999999999999998763 48999999998
Q ss_pred CCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000524 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 994 (1444)
Q Consensus 925 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 994 (1444)
+++ ..+++.+|||+|++.+++ -|++||+.++. + .+ ++.++++++..++.+.. |+.+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 754 457788999999998886 69999997641 1 22 23478888888887644 5667654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|+++|+++ ..+.+|+|++|++
T Consensus 586 -G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~ 659 (686)
T TIGR03797 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA 659 (686)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999886 689999999985 5678999999986
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|+++..|+.
T Consensus 660 -G~iv~~G~~ 668 (686)
T TIGR03797 660 -GRVVQQGTY 668 (686)
T ss_pred -CEEEEECCH
Confidence 899999985
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=325.76 Aligned_cols=219 Identities=21% Similarity=0.297 Sum_probs=176.4
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCC---CCceEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~---~~~~~~G~i~i~g 922 (1444)
.++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|.. .+.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 467888887763 246999999999999999999999999999999999952 2112479999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1444)
.++.. ...++.++|++|++.+++ .|+.||+.+....+.. ...+...+.++++++.++|.+....... ..+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLK-ESAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcc
Confidence 87642 134567999999988776 6999999886544311 1223344568899999998653222111 1246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.||++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 5899999999986 57789999999985 79
Q ss_pred EEEEcCC
Q 000524 1078 EIYVGPL 1084 (1444)
Q Consensus 1078 ~~y~G~~ 1084 (1444)
+++.|+.
T Consensus 223 ~~~~~~~ 229 (250)
T PRK14245 223 MVEYDDT 229 (250)
T ss_pred EEEECCH
Confidence 9999975
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=331.98 Aligned_cols=214 Identities=26% Similarity=0.327 Sum_probs=180.6
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 6 l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i~ 72 (279)
T PRK13635 6 IRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVLS 72 (279)
T ss_pred EEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECC
Confidence 788999887631 123599999999999999999999999999999999998653 4899999998764
Q ss_pred cc---cccceEEEEecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 927 QE---TFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 927 ~~---~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
.. ..++.+||++|++. .++..||.||+.+..... ....++..+.++++++.++|.+..++.+ ..||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G 144 (279)
T PRK13635 73 EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGG 144 (279)
T ss_pred cCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHH
Confidence 32 24567999999973 566789999998865433 1233444566899999999998877764 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEE
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1081 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~ 1081 (1444)
||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++ ..+|++++|++ |++++.
T Consensus 145 ~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~~ 221 (279)
T PRK13635 145 QKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILEE 221 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999876 899999999986 35 46999999985 799999
Q ss_pred cCC
Q 000524 1082 GPL 1084 (1444)
Q Consensus 1082 G~~ 1084 (1444)
|+.
T Consensus 222 g~~ 224 (279)
T PRK13635 222 GTP 224 (279)
T ss_pred CCH
Confidence 985
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=313.94 Aligned_cols=190 Identities=57% Similarity=0.936 Sum_probs=162.2
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.++++|+++.++... .++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~~---------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCCC---------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 467889988874210 12469999999999999999999999999999999999743224589999999876
Q ss_pred CcccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000524 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 1005 (1444)
Q Consensus 926 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1005 (1444)
. ..+++.++|++|++.+++.+|++|++.+...++ .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 5 344567899999998889999999998643110 49999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1006 Rl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
|++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++.++.+.+|++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999887799999999998744778899999998658998875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=327.21 Aligned_cols=217 Identities=18% Similarity=0.250 Sum_probs=179.1
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 922 (1444)
.+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 377889888773 236999999999999999999999999999999999976432 2589999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 993 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1444)
.++.. ..+++.++|++|+..+++.+||+||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87531 2345679999999999999999999988654331 1123344556889999999853 23332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000524 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1073 (1444)
Q Consensus 994 ~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~ 1073 (1444)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 467999999999999999999999999999999999999999999999864 689999999986 5778999999997
Q ss_pred c-----CcEEEEEcCC
Q 000524 1074 R-----GGQEIYVGPL 1084 (1444)
Q Consensus 1074 ~-----gg~~~y~G~~ 1084 (1444)
+ .|++++.|+.
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 2 4899999875
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=326.11 Aligned_cols=220 Identities=23% Similarity=0.307 Sum_probs=177.5
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCC--C-ceEEEEEEEc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--G-GYITGNITIS 921 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~-~~~~G~i~i~ 921 (1444)
..+.++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|... + .+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 3588999988773 2359999999999999999999999999999999999642 1 1358999999
Q ss_pred CccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000524 922 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 996 (1444)
Q Consensus 922 g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1444)
|.++.. ...++.++|++|++.+++ .||+||+.+....+. ....+...+.++++++.+++.+....... ...
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLH-ESA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCc
Confidence 987642 123567999999988887 599999988754331 11223334568889999998643222221 124
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCc
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg 1076 (1444)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~v~~l~~-G 224 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDVTAFFYM-G 224 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCEEEEEEC-C
Confidence 6799999999999999999999999999999999999999999999985 4799999999986 57788999999986 7
Q ss_pred EEEEEcCC
Q 000524 1077 QEIYVGPL 1084 (1444)
Q Consensus 1077 ~~~y~G~~ 1084 (1444)
+++..|+.
T Consensus 225 ~i~~~g~~ 232 (253)
T PRK14242 225 KLIEVGPT 232 (253)
T ss_pred EEEEeCCH
Confidence 89988875
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=323.46 Aligned_cols=195 Identities=26% Similarity=0.377 Sum_probs=161.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-------cceEEEEcCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDNH 237 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999999987 9999999998765431 3579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccccc
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1444)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1444)
++.+||+||+.++....+... .+....++.+++.+||++..++.+
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 138 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------------------------------KERRERAEELLERVGLGDRLNHYP- 138 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhcCh-
Confidence 999999999998754322100 001123567889999987666554
Q ss_pred CccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEE
Q 000524 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1444)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1444)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+. +|+.++|+.+++. .+|++++
T Consensus 139 ----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~-tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 139 ----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGT-TIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred ----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC-eEEEEECCHHHHh-hhcEEEE
Confidence 469999999999999999999999999999999999999999999998653344 4555677777775 9999999
Q ss_pred EcCCeE
Q 000524 398 LSDGQI 403 (1444)
Q Consensus 398 L~~G~i 403 (1444)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=327.17 Aligned_cols=225 Identities=22% Similarity=0.265 Sum_probs=182.7
Q ss_pred cCCCCceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCC---ceEEE
Q 000524 840 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITG 916 (1444)
Q Consensus 840 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G 916 (1444)
+|..+..+.++|+++.++ .+.+|+|+|+++++||++||+|+|||||||||++|+|...+ .+.+|
T Consensus 14 ~~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G 80 (267)
T PRK14237 14 FPEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTG 80 (267)
T ss_pred cCCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcce
Confidence 344445789999998773 24699999999999999999999999999999999997642 13589
Q ss_pred EEEEcCccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc
Q 000524 917 NITISGYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 991 (1444)
Q Consensus 917 ~i~i~g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v 991 (1444)
+|.++|.+... ...++.++|++|++.+++ .||+||+.+..... .....+..++.++++++.++|.+..+...
T Consensus 81 ~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~ 157 (267)
T PRK14237 81 QILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL 157 (267)
T ss_pred EEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh
Confidence 99999987642 123567899999988877 69999998864322 11223344566889999999964322222
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEE
Q 000524 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1071 (1444)
Q Consensus 992 g~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~l 1071 (1444)
.. ....||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++. ++.|||+++|+++ ++.+.||++++
T Consensus 158 ~~-~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~ 234 (267)
T PRK14237 158 HK-SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAF 234 (267)
T ss_pred cC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEE
Confidence 22 256899999999999999999999999999999999999999999999985 4799999999986 58889999999
Q ss_pred EecCcEEEEEcCC
Q 000524 1072 MKRGGQEIYVGPL 1084 (1444)
Q Consensus 1072 l~~gg~~~y~G~~ 1084 (1444)
|++ |++++.|+.
T Consensus 235 l~~-G~i~~~g~~ 246 (267)
T PRK14237 235 FYL-GDLIEYDKT 246 (267)
T ss_pred EEC-CEEEEeCCH
Confidence 985 899999986
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=322.35 Aligned_cols=204 Identities=34% Similarity=0.536 Sum_probs=165.0
Q ss_pred cceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCeecEEEECCccCCCCCccceEEEEcCCCCCCCC
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD---SSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGE 240 (1444)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~---~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1444)
.+++|+|+|+.+++||+++|+||||||||||+++|+|.++ |+ +|+|.++|+++.....++.++|++|++.+++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 95 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcC
Confidence 3569999999999999999999999999999999999998 66 99999999887643345779999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHH-HHHHhCCcccccccccCc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDY-YLKVLGLEVCADTMVGDE 319 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~dt~vg~~ 319 (1444)
+||+||+.|+......... ... ......+. .++.+++++..++.
T Consensus 96 ~tv~enl~~~~~~~~~~~~---~~~----------------------------~~~~~~~~~~l~~~~l~~~~~~~---- 140 (226)
T cd03234 96 LTVRETLTYTAILRLPRKS---SDA----------------------------IRKKRVEDVLLRDLALTRIGGNL---- 140 (226)
T ss_pred CcHHHHHHHHHHhhccccc---chH----------------------------HHHHHHHHHHHHhhcchhhhccc----
Confidence 9999999987543211000 000 00011233 68888887665544
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc
Q 000524 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1444)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1444)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++..++.+.+|++++|+
T Consensus 141 -~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~ 218 (226)
T cd03234 141 -VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLS 218 (226)
T ss_pred -ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEe
Confidence 457999999999999999999999999999999999999999999998764 355666654444468999999999999
Q ss_pred CCeEEEec
Q 000524 400 DGQIVYQG 407 (1444)
Q Consensus 400 ~G~iv~~G 407 (1444)
+|+++++|
T Consensus 219 ~G~i~~~g 226 (226)
T cd03234 219 SGEIVYSG 226 (226)
T ss_pred CCEEEecC
Confidence 99999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=332.06 Aligned_cols=205 Identities=20% Similarity=0.286 Sum_probs=169.5
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC-------ccceEEEEcCCC--
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHD-- 235 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d-- 235 (1444)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 45999999999999999999999999999999999999998 999999999875421 245799999986
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCc-ccccc
Q 000524 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADT 314 (1444)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (1444)
.+++ .||.||+.|+....+... .+....++++++.+||+ +..++
T Consensus 97 ~l~~-~tv~e~i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~ 141 (286)
T PRK13646 97 QLFE-DTVEREIIFGPKNFKMNL----------------------------------DEVKNYAHRLLMDLGFSRDVMSQ 141 (286)
T ss_pred ccch-hhHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhC
Confidence 3444 699999998653221100 01122456788999996 55554
Q ss_pred cccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCe
Q 000524 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1444)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1444)
. ++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++... .+++|+.++|..+++.+.+|+
T Consensus 142 ~-----~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dr 215 (286)
T PRK13646 142 S-----PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADE 215 (286)
T ss_pred C-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCE
Confidence 4 4579999999999999999999999999999999999999999999998653 345666678888899999999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 000524 395 IILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1444)
|++|++|++++.|+++++.
T Consensus 216 i~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 216 VIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=321.41 Aligned_cols=212 Identities=26% Similarity=0.389 Sum_probs=180.0
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
.++|+++.+. .+.+|+|+|++++|||+++|+|+||||||||+++|+|...+ ..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 5677777663 24699999999999999999999999999999999998653 47999999987643
Q ss_pred c-cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000524 928 E-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 1006 (1444)
Q Consensus 928 ~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkR 1006 (1444)
. ..++.++|++|++..++.+|+.|++.+....+. .......+.++++++.+++.+..++.+ ..||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 2 234678999999998888999999987654431 223334456789999999988777663 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1007 l~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999999999999999999999765 899999999986 57889999999986 799888864
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=328.91 Aligned_cols=220 Identities=27% Similarity=0.353 Sum_probs=181.0
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc-eEEEEEEEcCcc
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITISGYP 924 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 924 (1444)
-+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 377888887763 246999999999999999999999999999999999986543 236999999987
Q ss_pred CCc--------ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCcccccccc
Q 000524 925 KKQ--------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-----PEVDSETRKMFIEEVMELVELKPLIQSLV 991 (1444)
Q Consensus 925 ~~~--------~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~v 991 (1444)
... ...++.++|++|++.+++.+||.|++.+......+ .....+..+..++++++.+++.+..+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 12345689999999989999999999875321100 01112334456899999999987777653
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEE
Q 000524 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELF 1070 (1444)
Q Consensus 992 g~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ 1070 (1444)
..||||||||++|||+|+.+|++|+|||||+|||..++..+.+.|++++++ |+|||+++|++. ++.+.+|+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 579999999999999999999999999999999999999999999999764 899999999986 5788999999
Q ss_pred EEecCcEEEEEcCCC
Q 000524 1071 LMKRGGQEIYVGPLG 1085 (1444)
Q Consensus 1071 ll~~gg~~~y~G~~~ 1085 (1444)
+|++ |++++.|+..
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9985 7899998864
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=327.63 Aligned_cols=217 Identities=25% Similarity=0.337 Sum_probs=179.7
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.+. ++.+|+|+|+.+++||+++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 56788887663 2469999999999999999999999999999999999765 34799999998753
Q ss_pred c---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 927 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 927 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
. ...++.++|++|+...++.+|+.|++.++...... .....+...+.++++++.++|.+..++. +..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHH
Confidence 2 23345689999998888889999999875211000 0111123345678999999998877765 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEc
Confidence 999999999999999999999999999999999999999998777999999999986 68889999999986 7899998
Q ss_pred CCC
Q 000524 1083 PLG 1085 (1444)
Q Consensus 1083 ~~~ 1085 (1444)
+..
T Consensus 221 ~~~ 223 (255)
T PRK11231 221 TPE 223 (255)
T ss_pred CHH
Confidence 864
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=318.07 Aligned_cols=222 Identities=26% Similarity=0.347 Sum_probs=192.5
Q ss_pred cceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-------cceEEEEcCCCC
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDN 236 (1444)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1444)
...-++|+|+.++.||+..|||-||||||||+++|.++.+|+ .|+|.++|.++...+. ++.++.|+|+-.
T Consensus 40 ~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 40 LVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred cEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 345689999999999999999999999999999999999998 9999999999876543 367999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccc
Q 000524 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1444)
++|..||.||..|+.+.+|+... +.+.+..+.|+..||+..++.++
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYADKYP 162 (386)
T ss_pred cccchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcCc
Confidence 99999999999999999886421 12335677899999999888655
Q ss_pred cCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEE
Q 000524 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1444)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1444)
++||||+||||.|||||+.+|+|||||||+|+|||--+.++.+-|.++-+..++| |+.++|+.+|.+++-|||.
T Consensus 163 -----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KT-IvFitHDLdEAlriG~rIa 236 (386)
T COG4175 163 -----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKT-IVFITHDLDEALRIGDRIA 236 (386)
T ss_pred -----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCe-EEEEecCHHHHHhccceEE
Confidence 4799999999999999999999999999999999999999999887776655555 5568999999999999999
Q ss_pred EEcCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhh
Q 000524 397 LLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436 (1444)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v 436 (1444)
+|.+|+||..|+++|++. .|...-+++|..++
T Consensus 237 imkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 237 IMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred EecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 999999999999999974 45555566676654
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=326.87 Aligned_cols=218 Identities=21% Similarity=0.267 Sum_probs=178.9
Q ss_pred CCceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCC--C-ceEEEEEE
Q 000524 843 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--G-GYITGNIT 919 (1444)
Q Consensus 843 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~-~~~~G~i~ 919 (1444)
....+.++|+++.++ ...+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.
T Consensus 10 ~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 345688999988774 2359999999999999999999999999999999999753 1 13589999
Q ss_pred EcCccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccc
Q 000524 920 ISGYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSL 990 (1444)
Q Consensus 920 i~g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~ 990 (1444)
++|.++.. ..+++.++|++|+..+++ .|++||+.+....+. ..+.+..++.++++++.+++.+ ..+..
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 153 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS 153 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC
Confidence 99987632 234567999999988777 899999987654321 1233344456889999999853 23332
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEE
Q 000524 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELF 1070 (1444)
Q Consensus 991 vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ 1070 (1444)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||+++|++. ++.+.+|+++
T Consensus 154 -----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~ 226 (260)
T PRK10744 154 -----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTA 226 (260)
T ss_pred -----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEE
Confidence 46799999999999999999999999999999999999999999999985 4789999999986 5778899999
Q ss_pred EEecCcEEEEEcCC
Q 000524 1071 LMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1071 ll~~gg~~~y~G~~ 1084 (1444)
+|++ |+++..|+.
T Consensus 227 ~l~~-G~i~~~g~~ 239 (260)
T PRK10744 227 FMYL-GELIEFGNT 239 (260)
T ss_pred EEEC-CEEEEeCCH
Confidence 9985 899999875
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=328.85 Aligned_cols=219 Identities=23% Similarity=0.290 Sum_probs=181.9
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..+.++|+++.++ .+.+|+|+|+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEE
Confidence 3588899988874 24699999999999999999999999999999999998653 47999999987
Q ss_pred CCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000524 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000 (1444)
Q Consensus 925 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1000 (1444)
+.. ...++.++|++|++..++..|++|++.+...-..+ .....+..++.++++++.++|.+..++. +..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 145 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLS 145 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCC
Confidence 543 22345689999999888889999999765211100 0001123345688999999998777765 45799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEE
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1079 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~ 1079 (1444)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+.+|++++|++ |+++
T Consensus 146 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~ 223 (265)
T PRK10253 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIV 223 (265)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 899999999986 58899999999985 7999
Q ss_pred EEcCCC
Q 000524 1080 YVGPLG 1085 (1444)
Q Consensus 1080 y~G~~~ 1085 (1444)
+.|+..
T Consensus 224 ~~g~~~ 229 (265)
T PRK10253 224 AQGAPK 229 (265)
T ss_pred EeCCHH
Confidence 999863
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=337.08 Aligned_cols=208 Identities=22% Similarity=0.256 Sum_probs=173.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc------cceEEEEcCCC--C
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHD--N 236 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d--~ 236 (1444)
..+|+|||+.|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 56999999999999999999999999999999999999987 9999999998865432 35799999997 5
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCc-cccccc
Q 000524 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTM 315 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1444)
++|.+||.||+.+..+....+. .+ .+....++++++.+||. +..++
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~~--------~~------------------------~~~~~~~~~~l~~vgl~~~~~~~- 157 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPKL--------SR------------------------QEVKDRVKAMMLKVGLLPNLINR- 157 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccCC--------CH------------------------HHHHHHHHHHHHHcCCChHHhcC-
Confidence 7889999999998654321000 00 01123456788999994 34444
Q ss_pred ccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeE
Q 000524 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1444)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1444)
.+..|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+.. +++++.++|+...+.+++|+|
T Consensus 158 ----~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 158 ----YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM-GLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred ----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEE
Confidence 455799999999999999999999999999999999999999999999986533 456666899999999999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 000524 396 ILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1444)
++|++|++++.|+.+++.
T Consensus 233 ~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999998875
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=329.70 Aligned_cols=213 Identities=24% Similarity=0.360 Sum_probs=177.0
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcc
Confidence 46788887763 23599999999999999999999999999999999997653 4899999998763
Q ss_pred c-----ccccceEEEEecCCCC-CCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000524 927 Q-----ETFARISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000 (1444)
Q Consensus 927 ~-----~~~~~~~gyv~q~~~~-~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1000 (1444)
. ...++.++|++|++.. ....|+.|++.+....+ ....++..+.++++++.++|.+..++. +..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCC
Confidence 1 1234678999999753 34568999998764332 123334445688999999998877665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEE
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1080 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y 1080 (1444)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 57788999999986 79999
Q ss_pred EcCC
Q 000524 1081 VGPL 1084 (1444)
Q Consensus 1081 ~G~~ 1084 (1444)
.|+.
T Consensus 217 ~g~~ 220 (271)
T PRK13638 217 HGAP 220 (271)
T ss_pred eCCH
Confidence 9875
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=330.07 Aligned_cols=203 Identities=25% Similarity=0.332 Sum_probs=169.7
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCC-CCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN-HIGEM 241 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1444)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++..
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 4899999999999999999999999999999999999987 9999999998765432 357999999863 45678
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
||+||+.|+.+..+... .+....++.+++.+||.+..+..+
T Consensus 96 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~----- 136 (274)
T PRK13647 96 TVWDDVAFGPVNMGLDK----------------------------------DEVERRVEEALKAVRMWDFRDKPP----- 136 (274)
T ss_pred cHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCCh-----
Confidence 99999998643221100 001224567899999987776655
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|++++. . +.+|+.++|..+++.+.+|+|++|++|
T Consensus 137 ~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-Q-GKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999999864 3 445566788888899999999999999
Q ss_pred eEEEecChhhH
Q 000524 402 QIVYQGPRELV 412 (1444)
Q Consensus 402 ~iv~~G~~~~~ 412 (1444)
++++.|+.+++
T Consensus 215 ~i~~~g~~~~~ 225 (274)
T PRK13647 215 RVLAEGDKSLL 225 (274)
T ss_pred EEEEECCHHHh
Confidence 99999998654
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=343.92 Aligned_cols=209 Identities=25% Similarity=0.417 Sum_probs=175.5
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1444)
+++|+|+|+.+++||+++|+||||||||||||+|+|.++|. +|+|.++|+++..... ++.++||+|++.+++.+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 46999999999999999999999999999999999999997 9999999998876432 46799999999888999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
||+||+.++..-.. + +... . . .+.+.+++++++.+||.+..++.+
T Consensus 93 tv~e~v~~~~~~~~-~-~~~~-------------~--~-------------~~~~~~v~~~le~vgl~~~~~~~~----- 137 (402)
T PRK09536 93 DVRQVVEMGRTPHR-S-RFDT-------------W--T-------------ETDRAAVERAMERTGVAQFADRPV----- 137 (402)
T ss_pred CHHHHHHhccchhc-c-cccC-------------C--C-------------HHHHHHHHHHHHHcCCchhhcCCh-----
Confidence 99999998642110 0 0000 0 0 011235678899999988777654
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
+.|||||||||.|||||+.+|++|+|||||+|||+.++.++.+.|+++++ .+ ++|+.++|+.+++.+++|++++|++|
T Consensus 138 ~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g-~TIIivsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DG-KTAVAAIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEECCHHHHHHhCCEEEEEECC
Confidence 47999999999999999999999999999999999999999999999875 44 45666788899999999999999999
Q ss_pred eEEEecChhhHH
Q 000524 402 QIVYQGPRELVL 413 (1444)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1444)
++++.|++++++
T Consensus 216 ~iv~~G~~~ev~ 227 (402)
T PRK09536 216 RVRAAGPPADVL 227 (402)
T ss_pred EEEEecCHHHHh
Confidence 999999998764
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=327.78 Aligned_cols=213 Identities=26% Similarity=0.351 Sum_probs=170.9
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC------ccceEEEEcCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV------PERTAAYISQHDNHI 238 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1444)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 45999999999999999999999999999999999999987 999999998876432 245699999999899
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+.+||+||+.++..... ... .... +.. ..+...+++++++.+||.+..+..+
T Consensus 92 ~~~tv~~~l~~~~~~~~--~~~---~~~~------~~~---------------~~~~~~~~~~~l~~~~l~~~~~~~~-- 143 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYK--PTW---RSLL------GRF---------------SEEDKERALSALERVGLADKAYQRA-- 143 (243)
T ss_pred ccccHHHHHhhcccccc--cch---hhhh------ccc---------------cHHHHHHHHHHHHHcCcHhhhcCCc--
Confidence 99999999987532110 000 0000 000 0001234567889999987666544
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
..|||||||||+||+||+.+|++++|||||+|||+.+...+.+.|+++.+..+ ++|+.++|+.+++.+++|++++|
T Consensus 144 ---~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 144 ---DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDG-ITVIINLHQVDLAKKYADRIVGL 219 (243)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEEEE
Confidence 47999999999999999999999999999999999999999999998865334 45555778888888999999999
Q ss_pred cCCeEEEecChhhH
Q 000524 399 SDGQIVYQGPRELV 412 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (1444)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999988765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=335.37 Aligned_cols=213 Identities=21% Similarity=0.242 Sum_probs=172.6
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CeecEEEECCccCCCCCc-------cceEEEEcCCC-
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHDMGEFVP-------ERTAAYISQHD- 235 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~-~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d- 235 (1444)
.++|+|||+.|++||+++|+|+||||||||+++|+|.+++.. ..+|+|.++|+++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 569999999999999999999999999999999999987422 138999999998865432 13699999997
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccc
Q 000524 236 -NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT 314 (1444)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1444)
.+.|.+||.+++....+...... ..+...+++++++.+||++..+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~---------------------------------~~~~~~~~~~~L~~~gL~~~~~- 145 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGN---------------------------------KKTRRQRAIDLLNQVGIPDPAS- 145 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCC---------------------------------HHHHHHHHHHHHHHCCCCChHH-
Confidence 47899999999876543211000 0011234677899999975221
Q ss_pred cccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCe
Q 000524 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1444)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1444)
+-+...+.|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.+.. +++++.++|+...+.+++|+
T Consensus 146 -~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~-g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 146 -RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKE-NMALVLITHDLALVAEAAHK 223 (326)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 1124456899999999999999999999999999999999999999999999987543 45666688999999999999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 000524 395 IILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1444)
|++|++|++++.|+.+++.
T Consensus 224 i~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999998875
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=328.02 Aligned_cols=218 Identities=28% Similarity=0.373 Sum_probs=180.6
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.++|+++.++ ++.+|+|+||.+++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 478999987763 2469999999999999999999999999999999999765 3479999999875
Q ss_pred Cc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000524 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 1001 (1444)
Q Consensus 926 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1001 (1444)
.. ..+++.++|++|+..+++.+|+.|++.+....... ........++.++++++.+++.+..++.+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 23456789999998888889999999875321110 00111223456889999999987777664 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEE
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1080 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y 1080 (1444)
|||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999986 57789999999985 78999
Q ss_pred EcCCC
Q 000524 1081 VGPLG 1085 (1444)
Q Consensus 1081 ~G~~~ 1085 (1444)
.|+..
T Consensus 229 ~~~~~ 233 (265)
T PRK10575 229 QGTPA 233 (265)
T ss_pred ecCHH
Confidence 98753
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=333.53 Aligned_cols=205 Identities=23% Similarity=0.351 Sum_probs=168.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCC----------------------
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF---------------------- 222 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~---------------------- 222 (1444)
..+|+|+|+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+....
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35899999999999999999999999999999999999997 89999998764210
Q ss_pred -----CccceEEEEcCCC-CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhh
Q 000524 223 -----VPERTAAYISQHD-NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEAN 296 (1444)
Q Consensus 223 -----~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~ 296 (1444)
..++.++||+|++ ..+...||+|||.|+....+... .+..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK----------------------------------EEAK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH----------------------------------HHHH
Confidence 1245799999985 34556799999998754322100 0112
Q ss_pred HHHHHHHHHhCCc-ccccccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 000524 297 VITDYYLKVLGLE-VCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG 375 (1444)
Q Consensus 297 ~~~~~~l~~lgL~-~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~ 375 (1444)
.+++.+++.+||+ +..+.. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g 215 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-Q-G 215 (305)
T ss_pred HHHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-C
Confidence 3467789999996 455544 457999999999999999999999999999999999999999999998863 3 4
Q ss_pred EEEEEEecCchhHHhhcCeEEEEcCCeEEEecChhhHH
Q 000524 376 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 376 t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~ 413 (1444)
++|+.++|+.+++.+.+|+|++|++|++++.|+++++.
T Consensus 216 ~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 216 KTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred CEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 55666888889999999999999999999999998864
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=319.00 Aligned_cols=195 Identities=25% Similarity=0.369 Sum_probs=165.0
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCC-CccceEEEEcCCCCCCCCCCH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF-VPERTAAYISQHDNHIGEMTV 243 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV 243 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 46999999999999999999999999999999999999887 99999999887542 124579999999988999999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1444)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1444)
+||+.+.....+. .+..++.+++.+||++..++.+ +.
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKV-----KG 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhH-----hh
Confidence 9999886432110 0113466788999987766554 46
Q ss_pred cchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000524 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1444)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1444)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.+ .+. +++.++|+.+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~-tii~~tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGI-TVLISSHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCC-EEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998764 344 455577888888899999999999999
Q ss_pred EEec
Q 000524 404 VYQG 407 (1444)
Q Consensus 404 v~~G 407 (1444)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=326.92 Aligned_cols=223 Identities=23% Similarity=0.295 Sum_probs=179.0
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++.....+ ..+.+.+|+|+|+++++||++||+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 67888887774210000 0113569999999999999999999999999999999999865 35899999998764
Q ss_pred cc------cccceEEEEecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000524 927 QE------TFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVS 997 (1444)
Q Consensus 927 ~~------~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 997 (1444)
.. ..++.++|++|++ .+.+.+||+|++.+...... .......++.++++++.+++. ...+.. +.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 31 1345799999996 45678999999976543211 122333455688999999996 555554 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCc
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg 1076 (1444)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+.+.+|++++|++ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999986 57778999999985 8
Q ss_pred EEEEEcCC
Q 000524 1077 QEIYVGPL 1084 (1444)
Q Consensus 1077 ~~~y~G~~ 1084 (1444)
++++.|+.
T Consensus 228 ~i~~~g~~ 235 (265)
T TIGR02769 228 QIVEECDV 235 (265)
T ss_pred EEEEECCH
Confidence 99999886
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=320.31 Aligned_cols=215 Identities=26% Similarity=0.332 Sum_probs=180.3
Q ss_pred cceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-C-CCCeecEEEECCccCCCCCc-------cceEEEEcCC
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD-S-SLKVSGRVTYNGHDMGEFVP-------ERTAAYISQH 234 (1444)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~-~-~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~ 234 (1444)
...+++|||+.+++||+++|+|.|||||||+.++|.|+++ + ....+|+|.++|.++-.+.. .+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999998 4 33567899999998765543 2579999999
Q ss_pred C--CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccc
Q 000524 235 D--NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCA 312 (1444)
Q Consensus 235 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1444)
+ .+.|.+||.+.+.-..+.+.... ...+...++.++|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHH
Confidence 6 67899999998876554321100 0112334567789999998642
Q ss_pred cccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhc
Q 000524 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392 (1444)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~f 392 (1444)
. +-+....+|||||||||.||.||+.+|++|+.|||||+||..++.+|++.|+++.+ ..++.++.|+|+..-+.+++
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhc
Confidence 2 33567789999999999999999999999999999999999999999999999987 45778888999999999999
Q ss_pred CeEEEEcCCeEEEecChhhHH
Q 000524 393 DDIILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 393 D~vilL~~G~iv~~G~~~~~~ 413 (1444)
|+|+||+.|+||+.|+.+++.
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999874
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=319.11 Aligned_cols=213 Identities=24% Similarity=0.361 Sum_probs=175.7
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
-+.++|+++.++... ....+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~~---------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQGE---------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCCC---------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEc
Confidence 478899988764210 113599999999999999999999999999999999998653 489999999876
Q ss_pred Cccc------c-cceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000524 926 KQET------F-ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 998 (1444)
Q Consensus 926 ~~~~------~-~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 998 (1444)
.... . ++.++|++|++.+++.+|+.|++.+....+. .......+.++++++.+++.+..+..+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4311 1 2568999999988899999999987654331 223344567899999999988777653 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 999 lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|++. .+ +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 899999999986 34 56999999986 67
Q ss_pred EEE
Q 000524 1078 EIY 1080 (1444)
Q Consensus 1078 ~~y 1080 (1444)
++.
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 754
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=341.73 Aligned_cols=202 Identities=24% Similarity=0.295 Sum_probs=174.8
Q ss_pred ceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcc---c----ccceEEEEecCCCC
Q 000524 871 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDIH 943 (1444)
Q Consensus 871 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~q~~~~ 943 (1444)
...+|+|+||+|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++... . .++.+||++|+..+
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 34689999999999999999999999999999999998653 479999999876431 1 13568999999999
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000524 944 SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023 (1444)
Q Consensus 944 ~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLD 1023 (1444)
++.+||+||+.|....+. ...++..+.++++++.++|.+..++.+ +.||||||||++|||+|+.+|++|+||
T Consensus 118 ~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999999999998765432 233444567889999999998877763 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1024 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1024 EPTsgLD~~s~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
|||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999875 4899999999986 67889999999986 799998875
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=343.49 Aligned_cols=213 Identities=26% Similarity=0.434 Sum_probs=180.4
Q ss_pred CCceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcC
Q 000524 843 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG 922 (1444)
Q Consensus 843 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g 922 (1444)
.+..+..+|++|.++. .+++++|+|++++||+.+||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 3456677799988852 23799999999999999999999999999999999998764 589999999
Q ss_pred ccCC---cccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccc------ccccC
Q 000524 923 YPKK---QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ------SLVGL 993 (1444)
Q Consensus 923 ~~~~---~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~------~~vg~ 993 (1444)
.+.. ...+++.++||+|++.+++ -|++||+.++. + +.+ ++.+.++++..+|.+..+ +.+|.
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~----~-~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR----P-DAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC----C-cCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8754 3568899999999998876 69999998752 1 122 334788899988877654 44554
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000524 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1073 (1444)
Q Consensus 994 ~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~ 1073 (1444)
+.++|||||+|||++||||+++++++++||||++||.++++.|++.|.++++ ++||++++|++. ....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 4579999999999999999999999999999999999999999999999986 599999999974 567789999998
Q ss_pred cCcEEEEEcCC
Q 000524 1074 RGGQEIYVGPL 1084 (1444)
Q Consensus 1074 ~gg~~~y~G~~ 1084 (1444)
+ |+++..|..
T Consensus 529 ~-G~l~~~g~~ 538 (559)
T COG4988 529 N-GRLVEQGTH 538 (559)
T ss_pred C-CceeccCCH
Confidence 5 899999875
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=321.12 Aligned_cols=212 Identities=25% Similarity=0.375 Sum_probs=179.9
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
+++|+++.++ .+.+|+|+|+++.+||+++|+||||||||||+++|+|...+ ..|+|.++|.++..
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 5677777663 24699999999999999999999999999999999998653 48999999987653
Q ss_pred c-cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000524 928 E-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 1006 (1444)
Q Consensus 928 ~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkR 1006 (1444)
. ..++.++|++|++..++..|+.||+.+....+. .......+.++++++.+++.+..++.+ +.||+||+||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 2 234678999999988889999999987654331 223333456789999999987777653 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1007 l~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
++||++|+.+|++++|||||+|||..++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999999998775 899999999986 57888999999985 799999885
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=322.36 Aligned_cols=206 Identities=26% Similarity=0.364 Sum_probs=169.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc--cceEEEEcCCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP--ERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~lT 242 (1444)
+.+|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 45999999999999999999999999999999999999987 9999999988754322 257999999988888999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
|+||+.+.....+... .+....++.+++.+||++..++.++
T Consensus 91 ~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~----- 131 (236)
T TIGR03864 91 VRQNLRYHAALHGLSR----------------------------------AEARERIAALLARLGLAERADDKVR----- 131 (236)
T ss_pred HHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCChh-----
Confidence 9999987643321100 0011235667889999877776554
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++..+.| |+.++|..+++. .+|++++|++|+
T Consensus 132 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t-iii~sH~~~~~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLS-VLWATHLVDEIE-ADDRLVVLHRGR 209 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCE-EEEEecChhhHh-hCCEEEEEeCCe
Confidence 699999999999999999999999999999999999999999999986533444 555677777775 499999999999
Q ss_pred EEEecChhhHHH
Q 000524 403 IVYQGPRELVLE 414 (1444)
Q Consensus 403 iv~~G~~~~~~~ 414 (1444)
+++.|+.+++.+
T Consensus 210 i~~~~~~~~~~~ 221 (236)
T TIGR03864 210 VLADGAAAELRG 221 (236)
T ss_pred EEEeCCHHHHHH
Confidence 999999877653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=330.01 Aligned_cols=217 Identities=23% Similarity=0.334 Sum_probs=176.7
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++... ...+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 67888888774210 0013599999999999999999999999999999999998653 5899999998754
Q ss_pred c-------ccccceEEEEecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000524 927 Q-------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGV 996 (1444)
Q Consensus 927 ~-------~~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 996 (1444)
. ..+++.++|++|++ .+++ .||+|++.+..... ....+...+.++++++.++|.+ ..+.. +
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 143 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----P 143 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 22456789999996 3444 69999998764332 1223344456789999999973 44554 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCc
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg 1076 (1444)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G 221 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-G 221 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999777899999999986 57788999999985 7
Q ss_pred EEEEEcCC
Q 000524 1077 QEIYVGPL 1084 (1444)
Q Consensus 1077 ~~~y~G~~ 1084 (1444)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (280)
T PRK13649 222 KLVLSGKP 229 (280)
T ss_pred EEEEeCCH
Confidence 99988875
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=320.01 Aligned_cols=201 Identities=27% Similarity=0.330 Sum_probs=162.2
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC------ccceEEEEcCCC--CC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV------PERTAAYISQHD--NH 237 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 237 (1444)
++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 5999999999999999999999999999999999999987 999999999876543 235799999998 46
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCc-ccccccc
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMV 316 (1444)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (1444)
++.+||+||+.+.....+..... + ......+.+++.+||. ...+..+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~~---------~-----------------------~~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSKK---------E-----------------------ARKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcHH---------H-----------------------HHHHHHHHHHHHCCCChhHhhCCc
Confidence 67899999998865432110000 0 0001124567888885 4445443
Q ss_pred cCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEE
Q 000524 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1444)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1444)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++...+. +|+.++|+.+++.+++|+|+
T Consensus 144 -----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~-tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 144 -----HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGL-TLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred -----hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHhcCeEE
Confidence 469999999999999999999999999999999999999999999998653244 55557777888888999999
Q ss_pred EEcCCeEEEec
Q 000524 397 LLSDGQIVYQG 407 (1444)
Q Consensus 397 lL~~G~iv~~G 407 (1444)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=322.14 Aligned_cols=220 Identities=20% Similarity=0.287 Sum_probs=178.5
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCC--Cc-eEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--GG-YITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 922 (1444)
.+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478889988763 2359999999999999999999999999999999999753 21 2479999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1444)
.++.. ..+++.++|++|+..+++.+|++||+.+...... .....+.++.++++++.+++......... ..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcC
Confidence 87632 2346679999999998999999999987543321 11223334567899999998642211111 1246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.||++++|++ |+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999975 689999999986 57789999999985 89
Q ss_pred EEEEcCC
Q 000524 1078 EIYVGPL 1084 (1444)
Q Consensus 1078 ~~y~G~~ 1084 (1444)
++..|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14256 225 LVECGET 231 (252)
T ss_pred EEEeCCH
Confidence 9999985
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=328.21 Aligned_cols=214 Identities=28% Similarity=0.351 Sum_probs=178.3
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.+. +++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECc
Confidence 56788887763 123599999999999999999999999999999999997653 4899999998763
Q ss_pred c-----ccccceEEEEecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000524 927 Q-----ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000 (1444)
Q Consensus 927 ~-----~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1000 (1444)
. ...++.++|++|++. .+...||.|++.+..... ....++..+.+.++++.++|.+..++.+ +.||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 123567999999963 333479999998764321 1233444556889999999988877764 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEE
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1080 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y 1080 (1444)
||||||+.||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++.+.||++++|++ |++++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 57788999999986 79999
Q ss_pred EcCC
Q 000524 1081 VGPL 1084 (1444)
Q Consensus 1081 ~G~~ 1084 (1444)
.|+.
T Consensus 218 ~g~~ 221 (275)
T PRK13639 218 EGTP 221 (275)
T ss_pred eCCH
Confidence 9875
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=321.65 Aligned_cols=210 Identities=25% Similarity=0.317 Sum_probs=173.7
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 2 EVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITK 66 (230)
T ss_pred EEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCC
Confidence 5677777663 2469999999999999999999999999999999999865 348999999987543
Q ss_pred c----cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCcCCHH
Q 000524 928 E----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE-LKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 928 ~----~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~lSgG 1002 (1444)
. ..++.++|++|+..+++.+|+.|++.+....+. .. ..+.++++++.++ +.+..++. +..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G 135 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGG 135 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHH
Confidence 1 124568999999999999999999987654321 11 1223567788776 55555554 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEE
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1081 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~ 1081 (1444)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~ 213 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVAS 213 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999998864 899999999986 57778999999985 799999
Q ss_pred cCCC
Q 000524 1082 GPLG 1085 (1444)
Q Consensus 1082 G~~~ 1085 (1444)
|+..
T Consensus 214 ~~~~ 217 (230)
T TIGR03410 214 GAGD 217 (230)
T ss_pred CCHH
Confidence 8863
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=322.03 Aligned_cols=198 Identities=24% Similarity=0.375 Sum_probs=167.3
Q ss_pred eeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEEecCCCCCCCCcHHHHHH
Q 000524 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLL 954 (1444)
Q Consensus 875 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~ 954 (1444)
|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.... ...+|++|++.+++.+||.|++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999865 35899999998764322 12489999999999999999998
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000524 955 YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034 (1444)
Q Consensus 955 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~ 1034 (1444)
+......+ ....++.++.+.++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 75321111 2233344556889999999988777653 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1035 AIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1035 ~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998765 899999999986 57888999999986 788888764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=326.15 Aligned_cols=217 Identities=27% Similarity=0.389 Sum_probs=178.7
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++ ++.+|+|+|+.+++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcc
Confidence 56778877663 24699999999999999999999999999999999997653 4799999998754
Q ss_pred c---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 927 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 927 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
. ...++.++|++|++..++.+||+|++.+....... ......+..+.++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 3 22345689999998777889999999875211000 00111223456889999999987777653 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.++|.|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999877899999999997 67789999999986 7899998
Q ss_pred CCC
Q 000524 1083 PLG 1085 (1444)
Q Consensus 1083 ~~~ 1085 (1444)
+..
T Consensus 220 ~~~ 222 (256)
T TIGR03873 220 PPR 222 (256)
T ss_pred CHH
Confidence 863
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=326.15 Aligned_cols=220 Identities=23% Similarity=0.269 Sum_probs=177.9
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCC---ceEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 922 (1444)
.+.++|+++.+. .+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 588999988873 24699999999999999999999999999999999997542 13589999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1444)
.++.. ..+++.++|++|++..++. ||.||+.+....+.. ........+.++++++.+++.+....... ..+.
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLH-EPGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhh-CCcc
Confidence 87642 2345678999999887774 999999887543321 11223334567899999999642211111 1246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ .+.+.+|++++|++ |+
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 239 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHL-GN 239 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 789999999986 57788999999985 79
Q ss_pred EEEEcCC
Q 000524 1078 EIYVGPL 1084 (1444)
Q Consensus 1078 ~~y~G~~ 1084 (1444)
++..|+.
T Consensus 240 i~~~g~~ 246 (267)
T PRK14235 240 LVEVGDT 246 (267)
T ss_pred EEEeCCH
Confidence 9999875
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=293.20 Aligned_cols=201 Identities=25% Similarity=0.388 Sum_probs=178.2
Q ss_pred eEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEEecCCCCCCCCcHHH
Q 000524 872 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 951 (1444)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e 951 (1444)
..+|+|||+.|.+||.++++||||||||||||+++|..++ ..|+|.+||.+++...- ..|.|+|++.+.|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 3589999999999999999999999999999999998774 58999999998764322 2489999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000524 952 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031 (1444)
Q Consensus 952 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~ 1031 (1444)
|+.|+..++ .+++.+|.+.+.+.+..+||.+..+.. +-.||||||||+.|||||+.+|+.|+||||.+.||+
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~-----i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKY-----IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccc-----eEeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999998887 467888999999999999999988776 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecC-cEEEEEcCCC
Q 000524 1032 RAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG-GQEIYVGPLG 1085 (1444)
Q Consensus 1032 ~s~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~v~ll~~g-g~~~y~G~~~ 1085 (1444)
-+++.++++|-++.+ +|+.++++||+.. |..-+++++++|+.| ||++..=|++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999875 4999999999986 455577999999865 6888777763
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=318.35 Aligned_cols=196 Identities=24% Similarity=0.347 Sum_probs=160.6
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-------cceEEEEcCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDNH 237 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999999987 9999999998765432 1469999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccccc
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1444)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1444)
++.+||+||+.+......... .+....++++++.+||++..+..+
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 139 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKSV----------------------------------KEAKERAYEMLEKVGLEHRINHRP- 139 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh-
Confidence 889999999998643221000 001123466888999987666544
Q ss_pred CccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEE
Q 000524 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1444)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1444)
+.|||||||||+||++|+.+|++++|||||+|||..++..+.+.|+++++..+.|+ +.++|+..++. .+|+|++
T Consensus 140 ----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti-i~~tH~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 140 ----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSF-LVVTHDLELAK-KLDRVLE 213 (221)
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEE-EEEeCCHHHHh-hcCEEEE
Confidence 46999999999999999999999999999999999999999999998865334454 55667666664 4799999
Q ss_pred EcCCeEE
Q 000524 398 LSDGQIV 404 (1444)
Q Consensus 398 L~~G~iv 404 (1444)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=332.18 Aligned_cols=223 Identities=18% Similarity=0.227 Sum_probs=179.9
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCC-c-eEEEEEEEcCcc
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG-G-YITGNITISGYP 924 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~-~-~~~G~i~i~g~~ 924 (1444)
++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|...+ + +.+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 6788888777421 1125699999999999999999999999999999999997642 2 358999999987
Q ss_pred CCcc---c----ccceEEEEecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000524 925 KKQE---T----FARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG 995 (1444)
Q Consensus 925 ~~~~---~----~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 995 (1444)
+... . .++.++|++|++ .+.|.+|+.+++........ ....++.++.+.++++.+||.+..+.+ ...
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l--~~~ 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRL--DVY 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHH--hCC
Confidence 6431 1 123689999998 46788999988766543321 123445566789999999997532211 112
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 996 ~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
...||||||||++||+||+.+|++|++||||+|||+.++..+++.|+++.+ .|.|+|++||+.+ .+.+.+|++++|+.
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~ 229 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYA 229 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999976 4899999999986 47788999999985
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|+++..|+.
T Consensus 230 -G~ive~g~~ 238 (326)
T PRK11022 230 -GQVVETGKA 238 (326)
T ss_pred -CEEEEECCH
Confidence 899999985
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=315.99 Aligned_cols=198 Identities=22% Similarity=0.293 Sum_probs=167.4
Q ss_pred EeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc-ccccceEEEEecCCCCCCCCcHHHH
Q 000524 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTVYES 952 (1444)
Q Consensus 874 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~q~~~~~~~lTv~e~ 952 (1444)
+++|+|+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.. ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 45799999999999999999999999999999998653 48999999987643 2345679999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000524 953 LLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032 (1444)
Q Consensus 953 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~ 1032 (1444)
+.+....+. . .....++.++++++.++|.+..++. ++.||||||||++||++|+.+|++++|||||+|||..
T Consensus 91 ~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 986532211 1 1122344578899999998877776 3579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcC
Q 000524 1033 AAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083 (1444)
Q Consensus 1033 s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~ 1083 (1444)
++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |+++..|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 999999999998765 899999999986 57788999999985 79888764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=322.42 Aligned_cols=219 Identities=21% Similarity=0.271 Sum_probs=176.5
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCC-ceEEEEEEEcCccC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG-GYITGNITISGYPK 925 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~-~~~~G~i~i~g~~~ 925 (1444)
+.++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56778887763 24699999999999999999999999999999999997532 24589999999876
Q ss_pred Cc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 926 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
.. ..+++.++|++|++.+++ .|++||+.+....+... ......++.++++++.++|.+....... ...+.||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLK-QNALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhc-CCcccCCHH
Confidence 43 234567899999988887 69999998865443210 1122334557899999999543211111 124679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999986 57789999999985 8999998
Q ss_pred CC
Q 000524 1083 PL 1084 (1444)
Q Consensus 1083 ~~ 1084 (1444)
+.
T Consensus 224 ~~ 225 (246)
T PRK14269 224 ES 225 (246)
T ss_pred CH
Confidence 75
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=317.99 Aligned_cols=192 Identities=26% Similarity=0.352 Sum_probs=160.5
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCccceEEEEcCCCC-CCCCCCH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDN-HIGEMTV 243 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 243 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 45999999999999999999999999999999999999987 9999999988754333467999999974 3556899
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1444)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1444)
+||+.++....+ + ....++++++.+||++..++.+ ..
T Consensus 90 ~e~l~~~~~~~~------------------------~--------------~~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (205)
T cd03226 90 REELLLGLKELD------------------------A--------------GNEQAETVLKDLDLYALKERHP-----LS 126 (205)
T ss_pred HHHHhhhhhhcC------------------------c--------------cHHHHHHHHHHcCCchhcCCCc-----hh
Confidence 999987543210 0 0113466789999987777655 46
Q ss_pred cchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000524 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1444)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1444)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+. +|+.++|..+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~-tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGK-AVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCC-EEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998864 344 455577888888899999999999997
Q ss_pred E
Q 000524 404 V 404 (1444)
Q Consensus 404 v 404 (1444)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=326.71 Aligned_cols=215 Identities=23% Similarity=0.319 Sum_probs=179.9
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEec
Confidence 4789999887631 124599999999999999999999999999999999998653 489999999886
Q ss_pred Cc---ccccceEEEEecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000524 926 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 1001 (1444)
Q Consensus 926 ~~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1001 (1444)
.. ..+++.++|++|++. .++.+||+||+.+..... ....+.....++++++.++|.+..++.+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 234567899999974 567789999998764322 1233444556889999999988777764 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEE
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1080 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y 1080 (1444)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|++. ++ ..+|++++|++ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999766 589999999986 34 57999999985 79998
Q ss_pred EcCC
Q 000524 1081 VGPL 1084 (1444)
Q Consensus 1081 ~G~~ 1084 (1444)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 8875
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=332.27 Aligned_cols=224 Identities=20% Similarity=0.288 Sum_probs=182.6
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc-eEEEEEEEcCcc
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITISGYP 924 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 924 (1444)
-+.++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 47899998777431 12356999999999999999999999999999999999976532 238999999987
Q ss_pred CCcc---c---cc-ceEEEEecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000524 925 KKQE---T---FA-RISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG 995 (1444)
Q Consensus 925 ~~~~---~---~~-~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 995 (1444)
+... . ++ +.++|++|++ .+.|.+|+.+++.+...... ....++..+++.++++.++|.+..+.. + ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CC
Confidence 6431 1 22 4799999998 57899999999876544332 234445556788999999997543221 1 23
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 996 ~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
...||||||||++||+||+.+|++|++||||+|||..++..|++.|+++.++ |.|+|+++|+++ .+.+.+|++++|+.
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 5689999999999999999999999999999999999999999999999765 899999999986 56778999999985
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|+++..|+.
T Consensus 238 -G~ive~g~~ 246 (330)
T PRK09473 238 -GRTMEYGNA 246 (330)
T ss_pred -CEEEEECCH
Confidence 899999986
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=334.20 Aligned_cols=217 Identities=21% Similarity=0.416 Sum_probs=173.1
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCC-------------------Ccc
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF-------------------VPE 225 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~-------------------~~~ 225 (1444)
.++|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 35999999999999999999999999999999999999997 99999999887542 124
Q ss_pred ceEEEEcCCCC-CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHH
Q 000524 226 RTAAYISQHDN-HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (1444)
Q Consensus 226 ~~~~yv~Q~d~-~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1444)
+.++||+|++. .+...||+||+.|+....+.. . .+...+++++++
T Consensus 116 ~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~ 161 (320)
T PRK13631 116 RRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVK-K---------------------------------SEAKKLAKFYLN 161 (320)
T ss_pred hcEEEEEECchhccccchHHHHHHhhHHhcCCC-H---------------------------------HHHHHHHHHHHH
Confidence 67999999862 333469999998864322110 0 001124567889
Q ss_pred HhCCc-ccccccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEec
Q 000524 305 VLGLE-VCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383 (1444)
Q Consensus 305 ~lgL~-~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q 383 (1444)
.+||+ ...+. .+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++|
T Consensus 162 ~~gL~~~~~~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~-g~TiiivtH 234 (320)
T PRK13631 162 KMGLDDSYLER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-N-NKTVFVITH 234 (320)
T ss_pred HcCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEec
Confidence 99996 34443 3457999999999999999999999999999999999999999999998764 3 445666788
Q ss_pred CchhHHhhcCeEEEEcCCeEEEecChhhHHH---HHHhcCCCCCC
Q 000524 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLE---FFESMGFKCPK 425 (1444)
Q Consensus 384 ~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~---~F~~~Gf~cp~ 425 (1444)
+.+++.+.+|+|++|++|++++.|+++++.+ .++..|..+|.
T Consensus 235 d~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 235 TMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 8888899999999999999999999987742 34445555544
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=366.10 Aligned_cols=134 Identities=22% Similarity=0.247 Sum_probs=107.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHh---hCCC
Q 000524 943 HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS 1018 (1444)
Q Consensus 943 ~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGqrkRl~ia~~L~---~~p~ 1018 (1444)
.+...||.|+|.++..-......+.++..+.+ ++++.+||.+. .+.. ...||||||||+.||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 44567999999876542211111223344455 58899999875 4554 3579999999999999998 5999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCcEEEEEcCC
Q 000524 1019 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-----RGGQEIYVGPL 1084 (1444)
Q Consensus 1019 illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~-----~gg~~~y~G~~ 1084 (1444)
+++|||||+|||..+...+++.|++++++|.|||+++|++. .+ +.+|++++|. .||+++..|+.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 99999999999999999999999999888999999999985 34 8999999996 36899999976
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=324.46 Aligned_cols=204 Identities=23% Similarity=0.359 Sum_probs=170.0
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCC-----------CccceEEEEcCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF-----------VPERTAAYISQH 234 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~-----------~~~~~~~yv~Q~ 234 (1444)
++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 5899999999999999999999999999999999999887 99999999887532 123579999999
Q ss_pred CCCCCCCCHHHHHHHhhhh-cCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccc
Q 000524 235 DNHIGEMTVRETLAFSARC-QGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCAD 313 (1444)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1444)
+.+++.+||+||+.++... ++. .. .+....++.+++.+||++..|
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~-~~---------------------------------~~~~~~~~~~l~~~gl~~~~~ 139 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVKGE-PK---------------------------------EEATARARELLAKVGLAGKET 139 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhcCC-CH---------------------------------HHHHHHHHHHHHHcCCcchhh
Confidence 9889999999999875321 110 00 001123566788999987666
Q ss_pred ccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcC
Q 000524 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393 (1444)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD 393 (1444)
+.+ +.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+. +|+.++|+.+++.+++|
T Consensus 140 ~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~-tvi~~tH~~~~~~~~~d 212 (250)
T PRK11264 140 SYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKR-TMVIVTHEMSFARDVAD 212 (250)
T ss_pred CCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCC-EEEEEeCCHHHHHHhcC
Confidence 544 47999999999999999999999999999999999999999999998864 344 45557888888999999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 000524 394 DIILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1444)
+|++|++|++++.|+.+++.
T Consensus 213 ~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 213 RAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999987763
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=356.62 Aligned_cols=220 Identities=21% Similarity=0.294 Sum_probs=184.8
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.+. ++.+|+|||+++++||+++|+||||||||||+++|+|...+++.+|+|.++|.++.
T Consensus 6 l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 72 (506)
T PRK13549 6 LEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ 72 (506)
T ss_pred EEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 78889888763 24699999999999999999999999999999999998654335899999998764
Q ss_pred ccc----ccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 927 QET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 927 ~~~----~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
... .++.+||++|++.+++.+||+|++.+....+.....+.+...+.++++++.+++.+..+..+ ..||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 147 (506)
T PRK13549 73 ASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLG 147 (506)
T ss_pred CCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHH
Confidence 321 24568999999988899999999988654321111223334456889999999987777664 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|.|||+++|++. ++.+.||++++|++ |++++.|
T Consensus 148 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~ 225 (506)
T PRK13549 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGTR 225 (506)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeeec
Confidence 999999999999999999999999999999999999999999877999999999986 57788999999985 7999999
Q ss_pred CCCc
Q 000524 1083 PLGR 1086 (1444)
Q Consensus 1083 ~~~~ 1086 (1444)
+..+
T Consensus 226 ~~~~ 229 (506)
T PRK13549 226 PAAG 229 (506)
T ss_pred cccc
Confidence 8753
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=320.40 Aligned_cols=201 Identities=29% Similarity=0.405 Sum_probs=169.2
Q ss_pred CceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc--ccccceEEEEe-cCCCCCCC
Q 000524 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ--ETFARISGYCE-QNDIHSPF 946 (1444)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~-q~~~~~~~ 946 (1444)
+.+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 345799999999999999999999999999999999997653 48999999986432 23456789997 55667788
Q ss_pred CcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000524 947 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1026 (1444)
Q Consensus 947 lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPT 1026 (1444)
+|++|++.+...++. ...++..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999999988654431 223334456788999999988877764 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1027 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1027 sgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999999765 899999999986 57788999999985 7887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=331.68 Aligned_cols=225 Identities=23% Similarity=0.252 Sum_probs=183.2
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
-++.+|+++.+....... ...+...+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 478899988775321100 001135699999999999999999999999999999999998653 479999999876
Q ss_pred Ccc------cccceEEEEecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000524 926 KQE------TFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGV 996 (1444)
Q Consensus 926 ~~~------~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 996 (1444)
... .+++.++|++|++ .+.|.+|+.+++........ .....+.++.+.++++.+||.+ ..++. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 431 2456799999997 57889999999876544321 2334455667899999999964 44554 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecC
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1075 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~g 1075 (1444)
..||||||||++||+||+.+|++|++||||++||..++..|++.|+++.++ |.|||++||+.+ .+.+.+|++++|+.
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 679999999999999999999999999999999999999999999999765 999999999986 46678999999985
Q ss_pred cEEEEEcCC
Q 000524 1076 GQEIYVGPL 1084 (1444)
Q Consensus 1076 g~~~y~G~~ 1084 (1444)
|++++.|+.
T Consensus 231 G~ive~g~~ 239 (327)
T PRK11308 231 GRCVEKGTK 239 (327)
T ss_pred CEEEEECCH
Confidence 899999985
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=326.17 Aligned_cols=219 Identities=26% Similarity=0.360 Sum_probs=177.7
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc------eEEEEEEE
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG------YITGNITI 920 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~------~~~G~i~i 920 (1444)
++++|+++.+. ++.+|+|+|+.|++||+++|+||||||||||+++|+|...+. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 56778877663 246999999999999999999999999999999999976532 12799999
Q ss_pred cCccCCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000524 921 SGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 996 (1444)
Q Consensus 921 ~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1444)
+|.+... ..+++.++|++|++..++.+||+|++.+....... .....+...+.++++++.++|.+..++. +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9987643 23455689999998766679999999875321110 0111123345688999999998776654 3
Q ss_pred CcCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhc
Q 000524 997 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAF 1066 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~---------~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~f 1066 (1444)
..||||||||++||++|+ .+|++|+|||||+|||+.+...+.+.|+++.++ |.|||+++|++. ++.+.+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 579999999999999999 599999999999999999999999999999776 899999999986 577889
Q ss_pred ceEEEEecCcEEEEEcCCC
Q 000524 1067 DELFLMKRGGQEIYVGPLG 1085 (1444)
Q Consensus 1067 D~v~ll~~gg~~~y~G~~~ 1085 (1444)
|++++|++ |++++.|+..
T Consensus 223 d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred CEEEEEEC-CeEEEecCHH
Confidence 99999985 7999999863
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=320.12 Aligned_cols=202 Identities=25% Similarity=0.301 Sum_probs=166.5
Q ss_pred ccceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCC--CccceEEEEc-CCCCCCC
Q 000524 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF--VPERTAAYIS-QHDNHIG 239 (1444)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~-Q~d~~~~ 239 (1444)
..+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 3467999999999999999999999999999999999999987 99999999875432 1245789997 5567778
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000524 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1444)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1444)
.+||+||+.+.....+... .+....++.+++.+||++..|+.++
T Consensus 109 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-- 152 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLPP----------------------------------ARFKKRLDELSELLDLEELLDTPVR-- 152 (236)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCChh--
Confidence 9999999988654322100 0011234667888999988887664
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc
Q 000524 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1444)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1444)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+ .+|+.++|+.+++.+++|++++|.
T Consensus 153 ---~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 153 ---QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG-TTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCC-CEEEEEecCHHHHHHhCCEEEEEe
Confidence 6999999999999999999999999999999999999999999999865334 455557788888899999999999
Q ss_pred CCeEEEec
Q 000524 400 DGQIVYQG 407 (1444)
Q Consensus 400 ~G~iv~~G 407 (1444)
+|++++.|
T Consensus 229 ~G~i~~~g 236 (236)
T cd03267 229 KGRLLYDG 236 (236)
T ss_pred CCEEEecC
Confidence 99998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=322.15 Aligned_cols=205 Identities=19% Similarity=0.339 Sum_probs=170.7
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC-----ccceEEEEcCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-----PERTAAYISQHDNHIG 239 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~~~ 239 (1444)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 45999999999999999999999999999999999999987 999999999876421 2457999999998899
Q ss_pred CCCHHHHHHHhhh-hcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 240 EMTVRETLAFSAR-CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 240 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
.+||+||+.++.. ..+.. . .+....++++++.+||++..+..+
T Consensus 91 ~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~-- 134 (240)
T PRK09493 91 HLTALENVMFGPLRVRGAS----------K------------------------EEAEKQARELLAKVGLAERAHHYP-- 134 (240)
T ss_pred CCcHHHHHHhHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChHHHhcCh--
Confidence 9999999987532 11100 0 001123567889999987666544
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
+.|||||||||+||+|++.+|++++|||||+|||..++..+.+.|++++. .+ ++|+.++|+.+++.+++|++++|
T Consensus 135 ---~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 135 ---SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EG-MTMVIVTHEIGFAEKVASRLIFI 209 (240)
T ss_pred ---hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999998764 34 45555778888899999999999
Q ss_pred cCCeEEEecChhhHH
Q 000524 399 SDGQIVYQGPRELVL 413 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1444)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988764
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=325.18 Aligned_cols=216 Identities=23% Similarity=0.282 Sum_probs=180.2
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 4789999887741 113589999999999999999999999999999999998653 489999999876
Q ss_pred Cc---ccccceEEEEecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000524 926 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 1001 (1444)
Q Consensus 926 ~~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1001 (1444)
.. ...++.++|++|++. +++..|+.+++.+..... ....+...+.++++++.+++.+..+.. ++.||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 43 234567899999974 677789999998864322 123344455688999999998877765 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEE
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1080 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y 1080 (1444)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++. .+|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998765 899999999986 455 4999999985 89999
Q ss_pred EcCCC
Q 000524 1081 VGPLG 1085 (1444)
Q Consensus 1081 ~G~~~ 1085 (1444)
.|+..
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 99863
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=336.51 Aligned_cols=203 Identities=21% Similarity=0.306 Sum_probs=175.7
Q ss_pred CceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCc----cCCc---cc---c-cceEEEEe
Q 000524 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY----PKKQ---ET---F-ARISGYCE 938 (1444)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~----~~~~---~~---~-~~~~gyv~ 938 (1444)
+...+|+|+||+|++||+++|+|+||||||||+++|+|...+ ..|+|.++|. ++.. .. + ++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 456799999999999999999999999999999999998653 4899999995 2211 11 1 24699999
Q ss_pred cCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCC
Q 000524 939 QNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1018 (1444)
Q Consensus 939 q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~ 1018 (1444)
|+..++|.+||+||+.|....+ ..+.+++.+.++++++.+||.+..+..+ ..||||||||++|||+|+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999876543 2344556677899999999998877764 5799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1019 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1019 illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
||+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~ 249 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTP 249 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999765 899999999986 67899999999985 899999986
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=327.97 Aligned_cols=218 Identities=20% Similarity=0.285 Sum_probs=179.7
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++.... ...+.+|+|||++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 5 l~~~~l~~~~~~~~~-------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~ 75 (280)
T PRK13633 5 IKCKNVSYKYESNEE-------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTS 75 (280)
T ss_pred EEEeeeEEEcCCCCC-------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecc
Confidence 778999888742100 012469999999999999999999999999999999999865 34899999998764
Q ss_pred c----ccccceEEEEecCCCC-CCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000524 927 Q----ETFARISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 1001 (1444)
Q Consensus 927 ~----~~~~~~~gyv~q~~~~-~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1001 (1444)
. ...++.+||++|++.. ....||.|++.|..... .....+.++.++++++.+||.+..++.+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 147 (280)
T PRK13633 76 DEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSG 147 (280)
T ss_pred ccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 3 2245679999999742 23468999998875432 2234444567899999999998887764 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEE
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1080 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y 1080 (1444)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++. .+|++++|++ |++++
T Consensus 148 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~~ 224 (280)
T PRK13633 148 GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVVM 224 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999764 999999999987 454 4999999986 79999
Q ss_pred EcCC
Q 000524 1081 VGPL 1084 (1444)
Q Consensus 1081 ~G~~ 1084 (1444)
.|+.
T Consensus 225 ~g~~ 228 (280)
T PRK13633 225 EGTP 228 (280)
T ss_pred ecCH
Confidence 9885
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=356.35 Aligned_cols=211 Identities=24% Similarity=0.367 Sum_probs=177.9
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..++++|++|+++. ++.+|+|+|++|+|||.+||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 472 ~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEE
Confidence 46999999999851 23599999999999999999999999999999999998764 58999999988
Q ss_pred CCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000524 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 994 (1444)
Q Consensus 925 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1444)
+.+ ..+++.+|||+|++.+++ .|++||+.++.. .+.+. +.++++++..++.+. .|+.+|..
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 654 456788999999998886 599999976421 12222 336777887777553 36677764
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++ +|+|+|+++|+++ ..+.+|++++|++
T Consensus 609 -G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~ 683 (708)
T TIGR01193 609 -GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH 683 (708)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999985 4899999999985 5688999999986
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|+++..|+.
T Consensus 684 -G~i~~~G~~ 692 (708)
T TIGR01193 684 -GKIIEQGSH 692 (708)
T ss_pred -CEEEEECCH
Confidence 899999984
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=317.32 Aligned_cols=197 Identities=31% Similarity=0.436 Sum_probs=165.9
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC--ccceEEEEcCCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1444)
.++|+|+|+.+++| +++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 35999999999999 99999999999999999999999987 999999998875432 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
|+||+.+..+..+... .+....++.+++.+||++..++.+ .
T Consensus 89 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 129 (211)
T cd03264 89 VREFLDYIAWLKGIPS----------------------------------KEVKARVDEVLELVNLGDRAKKKI-----G 129 (211)
T ss_pred HHHHHHHHHHHhCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHhCch-----h
Confidence 9999998654321100 001123567889999987777655 4
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++. + ++|+.++|+.+++.+++|++++|++|+
T Consensus 130 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 130 SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGK 206 (211)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998763 3 556667888888889999999999999
Q ss_pred EEEec
Q 000524 403 IVYQG 407 (1444)
Q Consensus 403 iv~~G 407 (1444)
+++.|
T Consensus 207 i~~~g 211 (211)
T cd03264 207 LVFEG 211 (211)
T ss_pred EEecC
Confidence 98765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=314.24 Aligned_cols=189 Identities=23% Similarity=0.373 Sum_probs=161.8
Q ss_pred eEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC---c----ccccceEEEEecCCCCC
Q 000524 872 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK---Q----ETFARISGYCEQNDIHS 944 (1444)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~gyv~q~~~~~ 944 (1444)
+.+|+|+|+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 469999999999999999999999999999999999865 34899999998742 1 12356799999999988
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000524 945 PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1024 (1444)
Q Consensus 945 ~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDE 1024 (1444)
+.+|++||+.+....+ ........+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999998865432 1233344556889999999988777663 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000524 1025 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1072 (1444)
Q Consensus 1025 PTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll 1072 (1444)
||+|||+.+...+.+.|+++.++|.|||+++|++. +.+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999998877999999999985 45789999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=368.32 Aligned_cols=210 Identities=25% Similarity=0.394 Sum_probs=177.0
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..++|+|+++.+. +++.+|+|+|++++||+++||+|+||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3699999986542 1246999999999999999999999999999999999976 4 48999999988
Q ss_pred CCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000524 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-------LIQSLVGLP 994 (1444)
Q Consensus 925 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 994 (1444)
+.+ ..+++.++||+|++.++. -|++||+.++. ++.+. +.++++++..++.+ -.||.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 654 456788999999998886 59999998751 12232 34677788777765 346777765
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
| .+||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +++|+|+++|+++ ..+.+|+|++|++
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 4 5799999999999999999999999999999999999999999999885 5899999999985 5678999999985
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|+++..|+.
T Consensus 559 -G~i~e~G~~ 567 (588)
T PRK11174 559 -GQIVQQGDY 567 (588)
T ss_pred -CeEeecCCH
Confidence 899998874
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=328.00 Aligned_cols=217 Identities=24% Similarity=0.313 Sum_probs=180.5
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCce-EEEEEEEcCcc
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-ITGNITISGYP 924 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~-~~G~i~i~g~~ 924 (1444)
-++++|+++.++. ..+.+|+|||++|++||++||+||||||||||+++|+|...+.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4788999887631 12359999999999999999999999999999999999765321 13899999988
Q ss_pred CCcc---cccceEEEEecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000524 925 KKQE---TFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000 (1444)
Q Consensus 925 ~~~~---~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1000 (1444)
.... ..++.+||++|++. .++..||.|++.|....+ ....++.++.++++++.++|.+..++. ++.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCC
Confidence 6532 24567899999974 566789999998764322 233445556789999999999877766 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEE
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1079 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~ 1079 (1444)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++ ..||++++|++ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 34 57999999985 7999
Q ss_pred EEcCC
Q 000524 1080 YVGPL 1084 (1444)
Q Consensus 1080 y~G~~ 1084 (1444)
+.|+.
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 99985
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=318.23 Aligned_cols=199 Identities=27% Similarity=0.397 Sum_probs=171.6
Q ss_pred EeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcc-cccceEEEEecCCCCCCCCcHHHH
Q 000524 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTVYES 952 (1444)
Q Consensus 874 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~lTv~e~ 952 (1444)
+|+|+|++|+|||+++|+|+||||||||+++|+|... +.+|+|.++|.+.... ..++.++|++|++.+++.+|+.|+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999765 3589999999876542 234578999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000524 953 LLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032 (1444)
Q Consensus 953 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~ 1032 (1444)
+.+..... ........+.+.++++.++|.+..++.+ ..||||||||++||++|+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 1223334456788999999988777764 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1033 AAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1033 s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999998765 999999999985 57788999999986 799998875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=319.80 Aligned_cols=211 Identities=21% Similarity=0.293 Sum_probs=176.3
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
++++|+++.++. + ..|||+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 567888887741 1 238999999999999999999999999999999865 34799999998764
Q ss_pred cc-cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000524 927 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 1005 (1444)
Q Consensus 927 ~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1005 (1444)
.. ..++.++|++|++.+++.+|+.||+.+..... ... .+..++.++++++.++|.+..++.+ ..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 32 12456899999999999999999998753211 111 1233556899999999998877764 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1006 Rl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998764 899999999986 57788999999986 799999885
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=327.32 Aligned_cols=205 Identities=25% Similarity=0.353 Sum_probs=169.9
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCC-CCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN-HIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 240 (1444)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++. .++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 34899999999999999999999999999999999999997 9999999998865432 357999999973 6777
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
+||.|||.++.+..+... .+....++++++.+||++..++.++
T Consensus 97 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~--- 139 (279)
T PRK13635 97 ATVQDDVAFGLENIGVPR----------------------------------EEMVERVDQALRQVGMEDFLNREPH--- 139 (279)
T ss_pred ccHHHHHhhhHhhCCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCcc---
Confidence 899999998654321100 0112246778999999877776554
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++... +++|+.++|..+++. .+|+|++|++
T Consensus 140 --~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~-~~tilivsH~~~~~~-~~d~i~~l~~ 215 (279)
T PRK13635 140 --RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK-GITVLSITHDLDEAA-QADRVIVMNK 215 (279)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 699999999999999999999999999999999999999999999986533 444555667777775 5999999999
Q ss_pred CeEEEecChhhHH
Q 000524 401 GQIVYQGPRELVL 413 (1444)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1444)
|++++.|+.+++.
T Consensus 216 G~i~~~g~~~~~~ 228 (279)
T PRK13635 216 GEILEEGTPEEIF 228 (279)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988765
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=328.83 Aligned_cols=219 Identities=20% Similarity=0.312 Sum_probs=177.2
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.++|+++.++... .....+|+|+|+++++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEc
Confidence 478999988774210 0013599999999999999999999999999999999998653 479999999875
Q ss_pred Cc--------ccccceEEEEecCCCC-CCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000524 926 KQ--------ETFARISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPG 995 (1444)
Q Consensus 926 ~~--------~~~~~~~gyv~q~~~~-~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~ 995 (1444)
.. ..+++.++|++|++.. ....|++||+.|..... ....+...+.++++++.++|. +..++.
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 31 2345678999999742 22369999998864322 123334445678899999994 555554
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 996 ~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
++.||||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.||++++|++
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 57889999999985
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 799998875
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=320.83 Aligned_cols=209 Identities=26% Similarity=0.348 Sum_probs=174.6
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 367888887763 2359999999999999999999999999999999999765 3489999999875
Q ss_pred Cc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCH
Q 000524 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLST 1001 (1444)
Q Consensus 926 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSg 1001 (1444)
.. ...++.++|++|++.+++ .|++|++.+....+ . . ....++++++.++|. +..++. ...|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G-E---KNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C-c---HHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 42 234567899999988776 69999997653322 1 1 123578899999996 455543 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEE
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1080 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y 1080 (1444)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 57788999999986 78988
Q ss_pred EcCC
Q 000524 1081 VGPL 1084 (1444)
Q Consensus 1081 ~G~~ 1084 (1444)
.|+.
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=321.56 Aligned_cols=219 Identities=26% Similarity=0.307 Sum_probs=175.7
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCC--Cc-eEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--GG-YITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 922 (1444)
-+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 378899988773 2359999999999999999999999999999999999632 21 2479999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1444)
.+... ..+++.++|++|+..+++ .||+||+.+....+. ....+..++.++++++.+++.+....... ..+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLH-DSAL 147 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHh-cCcc
Confidence 87632 134567999999988877 899999987654321 11223334567889999988532111111 1246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14239 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLD-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 699999999986 57889999999986 79
Q ss_pred EEEEcCC
Q 000524 1078 EIYVGPL 1084 (1444)
Q Consensus 1078 ~~y~G~~ 1084 (1444)
+++.|+.
T Consensus 225 i~~~g~~ 231 (252)
T PRK14239 225 LIEYNDT 231 (252)
T ss_pred EEEeCCH
Confidence 9999875
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=330.93 Aligned_cols=222 Identities=19% Similarity=0.235 Sum_probs=181.0
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCC---ceEEEEEEEc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITIS 921 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~ 921 (1444)
..+.++|+++.+.. +.+.+|+|+|++|++||++||+|+||||||||+++|+|.... .+.+|+|.+|
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 35899999988742 123599999999999999999999999999999999997532 2357999999
Q ss_pred CccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000524 922 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 996 (1444)
Q Consensus 922 g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1444)
|.++.. ...++.++||+|++.+++ .|++||+.|..... ...+.+..++.++++++.++|.+..++.++.. .
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~-~ 223 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN--GINDRKILEKIVEKSLKSAALWDEVKDDLDKA-G 223 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc--CCChHHHHHHHHHHHHHHcCCcchhhhhhhCC-c
Confidence 998752 234667999999998875 79999999864322 11122233445788899999865444444433 5
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCc
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg 1076 (1444)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.+|++++|++ |
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G 300 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-G 300 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 68999999999999999999999999999999999999999999999875 799999999986 46777999999985 8
Q ss_pred EEEEEcCC
Q 000524 1077 QEIYVGPL 1084 (1444)
Q Consensus 1077 ~~~y~G~~ 1084 (1444)
+++..|+.
T Consensus 301 ~i~e~g~~ 308 (329)
T PRK14257 301 WIEEAGET 308 (329)
T ss_pred EEEEeCCH
Confidence 99999986
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=332.08 Aligned_cols=208 Identities=20% Similarity=0.240 Sum_probs=174.5
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc------cceEEEEcCCC--C
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHD--N 236 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d--~ 236 (1444)
..+|+|||+.|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|+++..... ++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 56999999999999999999999999999999999999887 9999999998865432 35799999997 5
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcc-ccccc
Q 000524 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV-CADTM 315 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (1444)
+.+.+||.+++....+...... + .+...++.++++.+||+. ..++.
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 151 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSLS---------A------------------------AERREKALAMMAKVGLRPEHYDRY 151 (327)
T ss_pred cCCccCHHHHHHHHHHHccCCC---------H------------------------HHHHHHHHHHHHHCCCChHHhcCC
Confidence 8899999999987654321000 0 011234677899999963 45544
Q ss_pred ccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeE
Q 000524 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1444)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1444)
++.|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+.. +++++.++|+...+.+++|+|
T Consensus 152 -----p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~-g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 152 -----PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL-GLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred -----CccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEE
Confidence 45799999999999999999999999999999999999999999999986543 456666899999999999999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 000524 396 ILLSDGQIVYQGPRELVLE 414 (1444)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1444)
++|++|++++.|+.+++.+
T Consensus 226 ~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 9999999999999988753
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=324.31 Aligned_cols=219 Identities=21% Similarity=0.249 Sum_probs=176.1
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCC---ceEEEEEEEc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITIS 921 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~ 921 (1444)
..+.++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|.... .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3588999988773 24699999999999999999999999999999999997542 1358999999
Q ss_pred CccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000524 922 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 996 (1444)
Q Consensus 922 g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1444)
|.++.. ...++.++|++|++.+++ .||+||+.+.+..+. ... ..++.++++++.+++....+... ...+
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~-~~~~ 152 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKL-NESG 152 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhh-CCCc
Confidence 987531 234567899999998887 499999988764431 111 22345778888888753211111 1124
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec--
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR-- 1074 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~-- 1074 (1444)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++
T Consensus 153 ~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~ 230 (269)
T PRK14259 153 YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEE 230 (269)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccc
Confidence 67999999999999999999999999999999999999999999999854 799999999986 68889999999985
Q ss_pred --------CcEEEEEcCC
Q 000524 1075 --------GGQEIYVGPL 1084 (1444)
Q Consensus 1075 --------gg~~~y~G~~ 1084 (1444)
+|++++.|+.
T Consensus 231 ~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 231 VEGGSGGKVGYLVEFNET 248 (269)
T ss_pred cccccccccceEEEeCCH
Confidence 3678999886
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=338.51 Aligned_cols=195 Identities=24% Similarity=0.362 Sum_probs=168.7
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCC-------CccceEEEEcCCCCCCCCCC
Q 000524 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF-------VPERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 242 (1444)
|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++||+|++.+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999987 99999999887531 12467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
|+||+.|+.+.. ....++.+++.+||++..+..+ +
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~ 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYP-----G 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCc-----c
Confidence 999998853200 0113567889999987776554 4
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI-NIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 799999999999999999999999999999999999999999999987543 4455668888899999999999999999
Q ss_pred EEEecChhhHH
Q 000524 403 IVYQGPRELVL 413 (1444)
Q Consensus 403 iv~~G~~~~~~ 413 (1444)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999998874
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=321.17 Aligned_cols=219 Identities=19% Similarity=0.250 Sum_probs=174.9
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCC--c-eEEEEEEEcCc
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG--G-YITGNITISGY 923 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g~ 923 (1444)
-+++|+++.++ .+.+|+|+||++++||+++|+|+||||||||+++|+|.... . +.+|+|.++|.
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 35677776653 24699999999999999999999999999999999997541 1 35899999998
Q ss_pred cCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000524 924 PKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 998 (1444)
Q Consensus 924 ~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 998 (1444)
++.. ...++.++|++|++.+++. |++||+.+....+. .....+..++.++++++.++|.+...+.... .+..
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-Chhh
Confidence 7532 1245678999999888875 99999987643331 1112233445678999999997532222111 2467
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEE
Q 000524 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1078 (1444)
Q Consensus 999 lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~ 1078 (1444)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i 226 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRI 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999985 4899999999986 57788999999986 799
Q ss_pred EEEcCC
Q 000524 1079 IYVGPL 1084 (1444)
Q Consensus 1079 ~y~G~~ 1084 (1444)
++.|+.
T Consensus 227 ~~~~~~ 232 (251)
T PRK14244 227 VEYNTT 232 (251)
T ss_pred EEeCCH
Confidence 998875
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=353.69 Aligned_cols=210 Identities=26% Similarity=0.388 Sum_probs=177.4
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..++++|++|+++. ..+.+|+|+|++|+|||.+||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEe
Confidence 46999999999862 124599999999999999999999999999999999998764 48999999998
Q ss_pred CCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000524 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 994 (1444)
Q Consensus 925 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1444)
+++ ..+++.+|||+|++.+++ .|++||+.++. + +.+ ++.++++++..++.+. .|+.+|..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIP----DADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC----C-CCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 654 356889999999998885 69999997531 1 222 2346778888887654 35667654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|++ .++|+|+++|+++ ....+|++++|++
T Consensus 613 -G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 -GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER 686 (710)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 468999999999999999999999999999999999999999999986 4899999999985 5677999999985
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|+++..|+.
T Consensus 687 -G~i~~~G~~ 695 (710)
T TIGR03796 687 -GKVVQRGTH 695 (710)
T ss_pred -CEEEEecCH
Confidence 899999985
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=330.05 Aligned_cols=238 Identities=28% Similarity=0.440 Sum_probs=191.1
Q ss_pred HHhhcCCCCCccEEEEeceEEEEEEecCCCcCCChhHHHHHHHHHHHhhhccCCCccccceEeeceeeEEeCCeEEEEEc
Q 000524 106 RIDRVGIDLPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLG 185 (1444)
Q Consensus 106 ~~~~~~~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilG 185 (1444)
+-+++.++-|+-.+..|++++-. | ..++++|+|+||.+.+|+-++|+|
T Consensus 322 ~~~~m~LP~P~g~L~Ve~l~~~P------------------------------P--g~~~pil~~isF~l~~G~~lgIIG 369 (580)
T COG4618 322 AAERMPLPAPQGALSVERLTAAP------------------------------P--GQKKPILKGISFALQAGEALGIIG 369 (580)
T ss_pred ccCCCCCCCCCceeeEeeeeecC------------------------------C--CCCCcceecceeEecCCceEEEEC
Confidence 33356666677778888887621 1 123679999999999999999999
Q ss_pred CCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCcc---ceEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCchhhH
Q 000524 186 PPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYEL 262 (1444)
Q Consensus 186 p~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 262 (1444)
|||||||||.++|.|..+|. +|.|.+||.+++.+++. +.+||.||+-.+|+ -||.|||. |+.
T Consensus 370 PSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa---Rf~-------- 434 (580)
T COG4618 370 PSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA---RFG-------- 434 (580)
T ss_pred CCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH---hcc--------
Confidence 99999999999999999997 99999999999988764 78999999877776 59999995 221
Q ss_pred hHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccccchhhhhHHHHHHHHhcCC
Q 000524 263 LTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342 (1444)
Q Consensus 263 ~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p 342 (1444)
++.|.+...+|+...+ -| | -++.|++.+||.||+.+. +||||||||+++||||+++|
T Consensus 435 --------------~~~d~~kIieAA~lAg-vH----e---lIl~lP~GYdT~iG~~G~-~LSgGQRQRIaLARAlYG~P 491 (580)
T COG4618 435 --------------EEADPEKVIEAARLAG-VH----E---LILRLPQGYDTRIGEGGA-TLSGGQRQRIALARALYGDP 491 (580)
T ss_pred --------------ccCCHHHHHHHHHHcC-hH----H---HHHhCcCCccCccCCCCC-CCCchHHHHHHHHHHHcCCC
Confidence 1223333333322211 11 1 146799999999998654 89999999999999999999
Q ss_pred ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeEEEecChhhHHHHH
Q 000524 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFF 416 (1444)
Q Consensus 343 ~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~~F 416 (1444)
.+++||||-|.||+.....+.+.|.+.. ..|+|+|+.. | .|.+...+|+|++|++|++-.+|+++|++...
T Consensus 492 ~lvVLDEPNsNLD~~GE~AL~~Ai~~~k-~rG~~vvvia-H-RPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 492 FLVVLDEPNSNLDSEGEAALAAAILAAK-ARGGTVVVIA-H-RPSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred cEEEecCCCCCcchhHHHHHHHHHHHHH-HcCCEEEEEe-c-CHHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 9999999999999999999999998865 3566666644 3 45688999999999999999999999998743
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=322.57 Aligned_cols=201 Identities=25% Similarity=0.360 Sum_probs=167.5
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1444)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... .+.++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHH
Confidence 35999999999999999999999999999999999999987 99999999987542 34589999999889999999
Q ss_pred HHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccccc
Q 000524 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1444)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1444)
||+.+..+..+... .+....++.+++.+||++..++.+ ..|
T Consensus 89 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 129 (255)
T PRK11248 89 DNVAFGLQLAGVEK----------------------------------MQRLEIAHQMLKKVGLEGAEKRYI-----WQL 129 (255)
T ss_pred HHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCCh-----hhC
Confidence 99988643221100 001123567889999987666544 469
Q ss_pred chhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc--CCe
Q 000524 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (1444)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~--~G~ 402 (1444)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++...+ ++|+.++|+..++.+++|+|++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g-~tviivsH~~~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETG-KQVLLITHDIEEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEeCCCcE
Confidence 99999999999999999999999999999999999999999998754334 445557788889999999999998 599
Q ss_pred EEEecChh
Q 000524 403 IVYQGPRE 410 (1444)
Q Consensus 403 iv~~G~~~ 410 (1444)
++..++.+
T Consensus 209 i~~~~~~~ 216 (255)
T PRK11248 209 VVERLPLN 216 (255)
T ss_pred EEEEecCC
Confidence 99988654
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=321.63 Aligned_cols=206 Identities=21% Similarity=0.341 Sum_probs=170.7
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1444)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 46999999999999999999999999999999999999987 9999999998765432 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
+||+||+.+..+....... .+....++.+++.+||++..+..
T Consensus 93 ~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~----- 134 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDLSA---------------------------------EQREDRANELMEEFHIEHLRDSM----- 134 (241)
T ss_pred CcHHHHHhhhhhcccccCH---------------------------------HHHHHHHHHHHHHcCCHHHhhcc-----
Confidence 9999999876432110000 00122456788999998665544
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
.+.|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.. .+. +|+.++|+..++.+++|++++|++
T Consensus 135 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~-tiii~sH~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 135 GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGL-GVLITDHNVRETLAVCERAYIVSQ 212 (241)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCC-EEEEEEcCHHHHHHhcCEEEEEeC
Confidence 457999999999999999999999999999999999999999999998754 344 455567777889999999999999
Q ss_pred CeEEEecChhhHH
Q 000524 401 GQIVYQGPRELVL 413 (1444)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1444)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=320.76 Aligned_cols=219 Identities=21% Similarity=0.243 Sum_probs=176.6
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 922 (1444)
-+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 367888887763 246999999999999999999999999999999999975421 2579999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1444)
.++.. ...++.++|++|++.+++ .|++||+.|....... ...+...+.++++++.+++.+....... ....
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 146 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLK-KSAL 146 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhh-CCcc
Confidence 87632 123567899999998887 8999999886543211 1223344567889999988532111111 1246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
.||+|||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 147 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~-G~ 223 (251)
T PRK14270 147 KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLM-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEEC-Ce
Confidence 8999999999999999999999999999999999999999999999876 689999999986 67888999999985 79
Q ss_pred EEEEcCC
Q 000524 1078 EIYVGPL 1084 (1444)
Q Consensus 1078 ~~y~G~~ 1084 (1444)
+++.|+.
T Consensus 224 i~~~~~~ 230 (251)
T PRK14270 224 LIEFNKT 230 (251)
T ss_pred EEEeCCH
Confidence 9999886
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=354.64 Aligned_cols=122 Identities=24% Similarity=0.294 Sum_probs=102.2
Q ss_pred CcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHHHHHHHHhhCC---CEEEE
Q 000524 947 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIFM 1022 (1444)
Q Consensus 947 lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p---~illL 1022 (1444)
+||.|++.|...+.. .....+.++.+||.. ..+.. ...||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~~---------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIPK---------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhchh---------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 788999888654321 112467899999975 34443 3579999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCcEEEEEcCC
Q 000524 1023 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-----RGGQEIYVGPL 1084 (1444)
Q Consensus 1023 DEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~-----~gg~~~y~G~~ 1084 (1444)
||||+|||..+...+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 9999999999999999999999888999999999985 457899999995 57999999985
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=322.14 Aligned_cols=219 Identities=20% Similarity=0.263 Sum_probs=176.8
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCC--Cc-eEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--GG-YITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 922 (1444)
-+.++|+++.+. .+.+|+|+|++|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 478999988763 2369999999999999999999999999999999999754 21 1479999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1444)
.+... ...++.+||++|++.+++. ||+||+.+....+. ....++..+.++++++.+++.+....... ....
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLH-TQAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhh-CCcc
Confidence 87632 2345678999999888875 99999987644321 11233344567889999998642111111 1246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 231 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GE 231 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999865 799999999986 57889999999985 89
Q ss_pred EEEEcCC
Q 000524 1078 EIYVGPL 1084 (1444)
Q Consensus 1078 ~~y~G~~ 1084 (1444)
++..|+.
T Consensus 232 i~~~g~~ 238 (259)
T PRK14274 232 LVECNDT 238 (259)
T ss_pred EEEECCH
Confidence 9999875
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=328.29 Aligned_cols=207 Identities=25% Similarity=0.332 Sum_probs=170.6
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCC--C---CccceEEEEcCCCC-CC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE--F---VPERTAAYISQHDN-HI 238 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~--~---~~~~~~~yv~Q~d~-~~ 238 (1444)
+.+|+|+|+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 35999999999999999999999999999999999999987 9999999998741 1 12357999999863 34
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
...||+||+.++....+... .+....++++++.+||.+..++.+
T Consensus 96 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-- 139 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKLPE----------------------------------DEVRKRVDNALKRTGIEHLKDKPT-- 139 (283)
T ss_pred ccccHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhCCc--
Confidence 56899999988643221100 001124577889999987766554
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+ ++|+.++|..+++.+++|++++|
T Consensus 140 ---~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tillvsH~~~~~~~~~dri~~l 215 (283)
T PRK13636 140 ---HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG-LTIIIATHDIDIVPLYCDNVFVM 215 (283)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999875334 45555788888888999999999
Q ss_pred cCCeEEEecChhhHHH
Q 000524 399 SDGQIVYQGPRELVLE 414 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1444)
++|++++.|+.+++..
T Consensus 216 ~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 216 KEGRVILQGNPKEVFA 231 (283)
T ss_pred ECCEEEEeCCHHHHhc
Confidence 9999999999988753
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=323.85 Aligned_cols=194 Identities=21% Similarity=0.284 Sum_probs=164.7
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHH
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRE 245 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1444)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHH
Confidence 4899999999999999999999999999999999999987 9999999977643 2467999999998889899999
Q ss_pred HHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccccc
Q 000524 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1444)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1444)
|+.++... . ....++.+++.+||.+..+..+ ..||
T Consensus 101 nl~~~~~~-----~-----------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~~LS 135 (257)
T PRK11247 101 NVGLGLKG-----Q-----------------------------------WRDAALQALAAVGLADRANEWP-----AALS 135 (257)
T ss_pred HHHhcccc-----h-----------------------------------HHHHHHHHHHHcCChhHhcCCh-----hhCC
Confidence 99874210 0 0012456788899987666544 4799
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 000524 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1444)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~ 405 (1444)
|||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+..+.| |+.++|+..++.+++|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~t-viivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFT-VLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999876543444 5557788888889999999999999999
Q ss_pred ecChh
Q 000524 406 QGPRE 410 (1444)
Q Consensus 406 ~G~~~ 410 (1444)
+|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88754
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=308.45 Aligned_cols=190 Identities=47% Similarity=0.833 Sum_probs=162.3
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCC--CCceEEEEEEEcCc
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK--TGGYITGNITISGY 923 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~--~~~~~~G~i~i~g~ 923 (1444)
.+.++|+++.++... ....+.+|+|+|+++++||+++|+||||||||||+++|+|.. . +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 478899988874210 001246999999999999999999999999999999999976 4 45899999998
Q ss_pred cCCcccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000524 924 PKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 1003 (1444)
Q Consensus 924 ~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGq 1003 (1444)
+......++.++|++|++.+++.+|++|++.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8754445677999999998888999999997642110 499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1004 rkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
|||++||++|+.+|++++|||||+|||..++..+.+.|+++.++|+|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999999777999999999997568889999999986 7887764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=312.91 Aligned_cols=211 Identities=23% Similarity=0.219 Sum_probs=153.9
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCC---CCCCCeecEEEECCccCCCCCccceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL---DSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l---~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1444)
+.++.|.|+.|-.|+.++++||||-||||||+-|+.+- +|+ -.+-||.|+- .-.+-
T Consensus 277 k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn--------------------IDvLlCEQEv-vad~t 335 (807)
T KOG0066|consen 277 KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN--------------------IDVLLCEQEV-VADST 335 (807)
T ss_pred ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC--------------------CceEeeeeee-eecCc
Confidence 45788999999999999999999999999999999873 332 2345777763 33344
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHH--H-----HHHHHHhhhhhhhHHHHHHHHHhCCcccccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID--V-----YMKAIATEGQEANVITDYYLKVLGLEVCADT 314 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~--~-----~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1444)
|..+++.-+- ..|.+++.+..+++.+.. .+|.. + +.+..+.....++.+...+|.-||.+.-..
T Consensus 336 ~Ai~tvl~aD-----~kRl~lLeee~~L~~q~e---~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ- 406 (807)
T KOG0066|consen 336 SAIDTVLKAD-----KKRLALLEEEAKLMSQIE---EGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQ- 406 (807)
T ss_pred HHHHHHHHhh-----HHHHHHHHHHHHHHHHHH---cCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHh-
Confidence 5666665432 234455555555554432 23321 1 222233344455667788999999986443
Q ss_pred cccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCe
Q 000524 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1444)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1444)
++.....|||.|-||++||||+..|-+|.|||||++||-....++-+.|+.+. +| +++++|+....-+.|.+
T Consensus 407 ---~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk----KT-LLIVSHDQgFLD~VCtd 478 (807)
T KOG0066|consen 407 ---ERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK----KT-LLIVSHDQGFLDSVCTD 478 (807)
T ss_pred ---cCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh----he-eEEEecccchHHHHHHH
Confidence 34455799999999999999999999999999999999999999999998763 34 44477888899999999
Q ss_pred EEEEcCCeEE-EecChhhHH
Q 000524 395 IILLSDGQIV-YQGPRELVL 413 (1444)
Q Consensus 395 vilL~~G~iv-~~G~~~~~~ 413 (1444)
||-|++-++- |.|++.-..
T Consensus 479 IIHLD~qkLhyYrGNY~~FK 498 (807)
T KOG0066|consen 479 IIHLDNQKLHYYRGNYTLFK 498 (807)
T ss_pred HhhhhhhhhhhhcchHHHHH
Confidence 9999988775 557665443
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=319.42 Aligned_cols=202 Identities=25% Similarity=0.339 Sum_probs=166.3
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 46999999999999999999999999999999999999987 9999999988765432 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhC-CcccccccccCc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LEVCADTMVGDE 319 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 319 (1444)
+||+||+.++.+..+.. . ....+.+++.++ +++..++.
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~---------------------------~~~~~~~l~~~~~l~~~~~~~---- 128 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR----------S---------------------------RKIPDEIYELFPVLKEMLGRR---- 128 (230)
T ss_pred CcHHHHHHHHHHhcCcc----------h---------------------------HHHHHHHHHHHHhHHHHhhCC----
Confidence 99999998865422100 0 001234555565 44444443
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc
Q 000524 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1444)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1444)
++.||||||||++||++|+.+|++++|||||+|||+.++.++.+.|+++++.. +++|+.++|+.+++.+++|+|++|+
T Consensus 129 -~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 129 -GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEG-GMAILLVEQYLDFARELADRYYVME 206 (230)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999876533 4455557788888999999999999
Q ss_pred CCeEEEecChhhH
Q 000524 400 DGQIVYQGPRELV 412 (1444)
Q Consensus 400 ~G~iv~~G~~~~~ 412 (1444)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998776
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=319.97 Aligned_cols=219 Identities=21% Similarity=0.295 Sum_probs=175.7
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 922 (1444)
.+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|..... +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 367889888763 235999999999999999999999999999999999964321 2479999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1444)
.++.. ...++.++|++|++.+++ .|++||+.+....+. ....+..++.++++++.+++.+....... ..+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 145 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLK-KSAL 145 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHh-cCCC
Confidence 87642 124567899999988877 899999988654331 11223345568888999987532111111 1246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|++. ++.+.+|++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14240 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFLN-GE 222 (250)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 4899999999985 57888999999986 79
Q ss_pred EEEEcCC
Q 000524 1078 EIYVGPL 1084 (1444)
Q Consensus 1078 ~~y~G~~ 1084 (1444)
++..|+.
T Consensus 223 i~~~~~~ 229 (250)
T PRK14240 223 IVEFGDT 229 (250)
T ss_pred EEEeCCH
Confidence 9998874
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=320.09 Aligned_cols=218 Identities=23% Similarity=0.327 Sum_probs=176.4
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc---eEEEEEEEcCc
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISGY 923 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~ 923 (1444)
++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 67888887763 235999999999999999999999999999999999975421 25899999998
Q ss_pred cCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000524 924 PKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 998 (1444)
Q Consensus 924 ~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 998 (1444)
++.. ...++.++|++|++.+++ .|++|++.+...... ....+..++.++++++.+++.+..+... ...+..
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChhh
Confidence 7642 124567999999998887 899999987654321 1122334455788999999864321111 122468
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEE
Q 000524 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1078 (1444)
Q Consensus 999 lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~ 1078 (1444)
||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |++
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i 223 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GEL 223 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 799999999986 57888999999986 799
Q ss_pred EEEcCC
Q 000524 1079 IYVGPL 1084 (1444)
Q Consensus 1079 ~y~G~~ 1084 (1444)
+..|+.
T Consensus 224 ~~~g~~ 229 (250)
T PRK14262 224 IEYGPT 229 (250)
T ss_pred EEecCH
Confidence 988875
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=331.01 Aligned_cols=222 Identities=17% Similarity=0.200 Sum_probs=178.4
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCC--ceEEEEEEEcCcc
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG--GYITGNITISGYP 924 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~~~~G~i~i~g~~ 924 (1444)
+.++|++..+... .+...+|+|||++|++||++||+|+||||||||+++|+|.... .+.+|+|.++|.+
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 6788888777432 1235699999999999999999999999999999999997642 2357999999987
Q ss_pred CCcc---c----ccceEEEEecCCC--CCCCCcHHHHHHHHHHhcCC-CC--CCHHHHHHHHHHHHHHcCCcccc---cc
Q 000524 925 KKQE---T----FARISGYCEQNDI--HSPFVTVYESLLYSAWLRLP-PE--VDSETRKMFIEEVMELVELKPLI---QS 989 (1444)
Q Consensus 925 ~~~~---~----~~~~~gyv~q~~~--~~~~lTv~e~l~f~a~lr~~-~~--~~~~~~~~~v~~~l~~l~L~~~~---~~ 989 (1444)
+... . .++.++||+|++. +.|.+||.+++.+....... .. ....+.++.+.++++.+||.+.. +.
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 6431 1 1346899999976 56889999999754221110 00 11123445688999999997532 33
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcce
Q 000524 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDE 1068 (1444)
Q Consensus 990 ~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~ 1068 (1444)
. +..||||||||++||+||+.+|+||+|||||+|||+.++..+++.|+++.++ |.|||+++|+++ .+.+.+|+
T Consensus 155 ~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dr 228 (330)
T PRK15093 155 F-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADK 228 (330)
T ss_pred C-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 3 4689999999999999999999999999999999999999999999999875 899999999986 57788999
Q ss_pred EEEEecCcEEEEEcCC
Q 000524 1069 LFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1069 v~ll~~gg~~~y~G~~ 1084 (1444)
+++|.+ |++++.|+.
T Consensus 229 i~vm~~-G~ive~g~~ 243 (330)
T PRK15093 229 INVLYC-GQTVETAPS 243 (330)
T ss_pred EEEEEC-CEEEEECCH
Confidence 999985 899999985
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=321.40 Aligned_cols=220 Identities=21% Similarity=0.290 Sum_probs=178.0
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc-e--EEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-Y--ITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~--~~G~i~i~g 922 (1444)
.+.++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|..... + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478899988763 235999999999999999999999999999999999975432 1 479999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1444)
.++.. ...++.++|++|++.+++ .|++||+.+....+. ..+....++.++++++.+++.+...... ...+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 149 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKL-NKSAL 149 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHh-cCCcc
Confidence 87532 234567899999998887 899999987654432 1122333456788999998853211111 11246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec---
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR--- 1074 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~--- 1074 (1444)
.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+.
T Consensus 150 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~ 227 (259)
T PRK14260 150 GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDES 227 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCC
Confidence 8999999999999999999999999999999999999999999999865 699999999996 68889999999983
Q ss_pred -CcEEEEEcCC
Q 000524 1075 -GGQEIYVGPL 1084 (1444)
Q Consensus 1075 -gg~~~y~G~~ 1084 (1444)
.|++++.|+.
T Consensus 228 ~~G~i~~~~~~ 238 (259)
T PRK14260 228 RIGQMVEFGVT 238 (259)
T ss_pred CCceEEEeCCH
Confidence 4899999986
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=324.86 Aligned_cols=205 Identities=25% Similarity=0.357 Sum_probs=167.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC---ccceEEEEcCCCC-CCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---PERTAAYISQHDN-HIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 35899999999999999999999999999999999999987 999999999886432 2467999999974 6778
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
+||+||+.++....+... .+....++++++.+||++..++.+
T Consensus 99 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 140 (271)
T PRK13632 99 ATVEDDIAFGLENKKVPP----------------------------------KKMKDIIDDLAKKVGMEDYLDKEP---- 140 (271)
T ss_pred ccHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCCc----
Confidence 999999988643211100 001124577889999987777655
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
+.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++.. ++++|+.++|..+++. .+|++++|++
T Consensus 141 -~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~~ 217 (271)
T PRK13632 141 -QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAI-LADKVIVFSE 217 (271)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHHh-hCCEEEEEEC
Confidence 479999999999999999999999999999999999999999999998653 3344444566666664 7999999999
Q ss_pred CeEEEecChhhHH
Q 000524 401 GQIVYQGPRELVL 413 (1444)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1444)
|++++.|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999987764
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=319.91 Aligned_cols=219 Identities=23% Similarity=0.260 Sum_probs=176.0
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 922 (1444)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 367888887763 246999999999999999999999999999999999975431 3579999999
Q ss_pred ccCCc----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000524 923 YPKKQ----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 998 (1444)
Q Consensus 923 ~~~~~----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 998 (1444)
.++.. ...++.++|++|++.+++ .||.||+.+...... ....+...+.+.++++.+++.+....... .....
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhh-cCccc
Confidence 87531 234567999999998887 899999987643321 11223334567888888888542211111 12467
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEE
Q 000524 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1078 (1444)
Q Consensus 999 lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~ 1078 (1444)
||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 689999999986 67888999999986 799
Q ss_pred EEEcCC
Q 000524 1079 IYVGPL 1084 (1444)
Q Consensus 1079 ~y~G~~ 1084 (1444)
+..|+.
T Consensus 223 ~~~g~~ 228 (249)
T PRK14253 223 VEHDDT 228 (249)
T ss_pred EEeCCH
Confidence 998875
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=328.95 Aligned_cols=205 Identities=23% Similarity=0.337 Sum_probs=169.2
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC-------ccceEEEEcCCCC-
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHDN- 236 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~- 236 (1444)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 45999999999999999999999999999999999999997 999999999875321 1357999999863
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCc-cccccc
Q 000524 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTM 315 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1444)
.+..+||+||+.|+.+..+.. . .+...+++.+++.+||+ ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS-E---------------------------------DEAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC-H---------------------------------HHHHHHHHHHHHHcCCChhHhhCC
Confidence 344689999998865322110 0 00112456789999996 455554
Q ss_pred ccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeE
Q 000524 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1444)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1444)
+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++|+.+++.+++|+|
T Consensus 143 ~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 143 P-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-A-GHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEE
Confidence 4 46999999999999999999999999999999999999999999998753 3 555666888999999999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 000524 396 ILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1444)
++|++|++++.|+.+++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=315.19 Aligned_cols=197 Identities=27% Similarity=0.346 Sum_probs=162.2
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-------cceEEEEcCCCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDNHI 238 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~~ 238 (1444)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++|++|++.++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 5899999999999999999999999999999999999987 9999999998765432 24699999999899
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+.+||.||+.+.....+... .+....++.+++.+||.+..+..+
T Consensus 101 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 144 (228)
T PRK10584 101 PTLNALENVELPALLRGESS----------------------------------RQSRNGAKALLEQLGLGKRLDHLP-- 144 (228)
T ss_pred CCcCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCCh--
Confidence 99999999988643221100 001123567889999987666554
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++...+.|+|+ ++|+.+++ +.+|++++|
T Consensus 145 ---~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~-~sH~~~~~-~~~d~i~~l 219 (228)
T PRK10584 145 ---AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIL-VTHDLQLA-ARCDRRLRL 219 (228)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE-EecCHHHH-HhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999986533445444 66666666 559999999
Q ss_pred cCCeEEEe
Q 000524 399 SDGQIVYQ 406 (1444)
Q Consensus 399 ~~G~iv~~ 406 (1444)
++|++++.
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99999753
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=322.09 Aligned_cols=220 Identities=22% Similarity=0.262 Sum_probs=178.3
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCC---ceEEEEEEEc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITIS 921 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~ 921 (1444)
..++++|+++.+. ++.+|+|+|+.|++||+++|+|+||||||||+++|+|.... .+.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3588999998873 23599999999999999999999999999999999998542 1358999999
Q ss_pred CccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000524 922 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 996 (1444)
Q Consensus 922 g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1444)
|.+... ..+++.++|++|++.+++. |++||+.+....+. ....+..++.++++++.+++.+......+ ...
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 166 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLH-ENA 166 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhh-CCc
Confidence 987642 1345679999999888875 99999987654321 11222334568889999998642111111 124
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCc
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg 1076 (1444)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G 243 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-G 243 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-C
Confidence 67999999999999999999999999999999999999999999999975 799999999986 57788999999986 7
Q ss_pred EEEEEcCC
Q 000524 1077 QEIYVGPL 1084 (1444)
Q Consensus 1077 ~~~y~G~~ 1084 (1444)
+++..|+.
T Consensus 244 ~i~~~g~~ 251 (272)
T PRK14236 244 KLVEYGDT 251 (272)
T ss_pred EEEecCCH
Confidence 99999875
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=284.34 Aligned_cols=197 Identities=25% Similarity=0.384 Sum_probs=170.0
Q ss_pred CceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcc-------cccceEEEEecCCC
Q 000524 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-------TFARISGYCEQNDI 942 (1444)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~q~~~ 942 (1444)
....||++|++.|++||.+||+|||||||||||-+|+|...+ .+|+|.+.|++.... ...+.+|+|+|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 457899999999999999999999999999999999998764 489999999986431 13467999999999
Q ss_pred CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEE
Q 000524 943 HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022 (1444)
Q Consensus 943 ~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illL 1022 (1444)
+.|++|..||+.....++.....+ ......+.|+.+||.+..+.. +..|||||+|||+||||++..|+|||.
T Consensus 99 Lip~ltAlENV~lPleL~ge~~~~---~~~~A~~lL~~vGLg~Rl~Hy-----P~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGESSAD---SRAGAKALLEAVGLGKRLTHY-----PAQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCCcccc---HHHHHHHHHHHhCcccccccC-----ccccCchHHHHHHHHHHhcCCCCEEec
Confidence 999999999999888887532222 223467889999999877766 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEE
Q 000524 1023 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1079 (1444)
Q Consensus 1023 DEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~ 1079 (1444)
||||-+||..+...|.+.+-.+.++ |.|.|+++|+|+ +...|||.+-|.. |+++
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~ 225 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLV 225 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceec
Confidence 9999999999999999999888654 999999999985 6888999999986 6765
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=320.64 Aligned_cols=221 Identities=22% Similarity=0.270 Sum_probs=179.1
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 922 (1444)
.++++|+++.+. ...+|+|+|+++++||+++|+|+||||||||+++|+|...+. ...|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 478999988773 235999999999999999999999999999999999975432 2369999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1444)
.++.. ...++.++|++|+..+++ .|+.||+.+....... ....+..+.+.++++.+++.+..+...+. .+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 87531 234567899999988887 8999999876433211 12223345688999999986532222221 246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecC-
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG- 1075 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~v~ll~~g- 1075 (1444)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .|+|||+++|++. ++.+.||++++|++|
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999865 4899999999986 688899999999864
Q ss_pred ---cEEEEEcCC
Q 000524 1076 ---GQEIYVGPL 1084 (1444)
Q Consensus 1076 ---g~~~y~G~~ 1084 (1444)
|++++.|+.
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 899999986
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=316.03 Aligned_cols=195 Identities=26% Similarity=0.374 Sum_probs=163.1
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC------ccceEEEEcCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV------PERTAAYISQHDNHI 238 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 35999999999999999999999999999999999999987 999999999876532 235799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+.+||+||+.+.....+.. . .+....++++++.+||++..++.+
T Consensus 91 ~~~t~~~~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (214)
T cd03292 91 PDRNVYENVAFALEVTGVP-P---------------------------------REIRKRVPAALELVGLSHKHRALP-- 134 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC-H---------------------------------HHHHHHHHHHHHHcCCHHHhhCCh--
Confidence 9999999999875432110 0 001123567888999987766554
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+ ++|+.++|+.+++.+++|++++|
T Consensus 135 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~-~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 135 ---AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AG-TTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred ---hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999998754 34 45555778888888999999999
Q ss_pred cCCeE
Q 000524 399 SDGQI 403 (1444)
Q Consensus 399 ~~G~i 403 (1444)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=360.96 Aligned_cols=208 Identities=28% Similarity=0.434 Sum_probs=169.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1444)
+++|+|+|+.++|||.+||+||||||||||+++|.|.++|+ +|+|.+||+++++... ++.++||+|++.+|. .
T Consensus 342 ~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~ 417 (567)
T COG1132 342 KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-G 417 (567)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-c
Confidence 56999999999999999999999999999999999999997 9999999999987754 578999999987777 7
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
||+|||.++..- .+.++..+++... ..++.+. .|+++.||.||+.+.
T Consensus 418 TI~~NI~~g~~~-------------------------at~eei~~a~k~a------~~~d~I~--~lp~g~dt~vge~G~ 464 (567)
T COG1132 418 TIRENIALGRPD-------------------------ATDEEIEEALKLA------NAHEFIA--NLPDGYDTIVGERGV 464 (567)
T ss_pred cHHHHHhcCCCC-------------------------CCHHHHHHHHHHh------ChHHHHH--hCcccccceecCCCc
Confidence 999999997421 0111111111111 0122222 357788999996544
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
.||||||||++||||++.+|++|+||||||+||+.+...|.+.++++. .++|+++ +.|..+.+.+ +|+|++|++|
T Consensus 465 -~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~ii-IaHRlsti~~-aD~IiVl~~G 539 (567)
T COG1132 465 -NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLI-IAHRLSTIKN-ADRIIVLDNG 539 (567)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEE-EeccHhHHHh-CCEEEEEECC
Confidence 799999999999999999999999999999999999999999999765 3467777 6665555544 9999999999
Q ss_pred eEEEecChhhHHH
Q 000524 402 QIVYQGPRELVLE 414 (1444)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1444)
++++.|++++++.
T Consensus 540 ~i~e~G~h~eLl~ 552 (567)
T COG1132 540 RIVERGTHEELLA 552 (567)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999975
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=353.34 Aligned_cols=212 Identities=26% Similarity=0.432 Sum_probs=179.5
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..++|+|++|+|+. .++.+|+|+|++|+|||++||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 46999999999852 124599999999999999999999999999999999998764 48999999998
Q ss_pred CCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000524 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 994 (1444)
Q Consensus 925 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1444)
+++ ..+++.++||+|++.+++ .|++||+.+.. + +.+ ++.++++++..++.+. .||.+|..
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA----P-YAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC----C-CCC----HHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 654 356788999999998886 59999997641 1 222 2346778888877654 46667654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|+++ ..+.||+|++|++
T Consensus 599 -G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~ 674 (694)
T TIGR03375 599 -GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN 674 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 46799999999999999999999999999999999999999999999885 4899999999985 5688999999985
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|+++..|+.
T Consensus 675 -G~i~e~G~~ 683 (694)
T TIGR03375 675 -GRIVADGPK 683 (694)
T ss_pred -CEEEeeCCH
Confidence 899999974
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=322.76 Aligned_cols=223 Identities=20% Similarity=0.267 Sum_probs=179.4
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++++..+.. +...+.+.+|+|+|+.+++||+++|+|||||||||||++|+|...+ .+|+|.++|.++.
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 788999887742110 0000124699999999999999999999999999999999998653 4899999998764
Q ss_pred cc---cccceEEEEecCCC--CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCC
Q 000524 927 QE---TFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLS 1000 (1444)
Q Consensus 927 ~~---~~~~~~gyv~q~~~--~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lS 1000 (1444)
.. ..++.++|++|++. +.+.+|+.|++.+....+. ........+.++++++.++|. +..+.. +..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcC
Confidence 31 22356899999975 5678899999987654432 123334445688999999994 555554 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEE
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1079 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~ 1079 (1444)
||||||++||++|+.+|+||+|||||+|||+.+...+.+.|++++++ |+|||+++|+++ ++...||++++|++ |+++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~ 229 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVV 229 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 57778999999985 8999
Q ss_pred EEcCC
Q 000524 1080 YVGPL 1084 (1444)
Q Consensus 1080 y~G~~ 1084 (1444)
+.|+.
T Consensus 230 ~~~~~ 234 (267)
T PRK15112 230 ERGST 234 (267)
T ss_pred ecCCH
Confidence 88875
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=318.16 Aligned_cols=202 Identities=26% Similarity=0.314 Sum_probs=165.8
Q ss_pred eeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHH
Q 000524 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETL 247 (1444)
Q Consensus 168 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1444)
|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999999987 9999999998765432 248999999999999999999
Q ss_pred HHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccccchh
Q 000524 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGG 327 (1444)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (1444)
.++.+...... .. .+....++.+++.+||++..++.+ +.||||
T Consensus 76 ~~~~~~~~~~~--------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPDL--------SK------------------------SERRAIVEEHIALVGLTEAADKRP-----GQLSGG 118 (230)
T ss_pred HHHHHhcccCC--------CH------------------------HHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHH
Confidence 88632100000 00 001123567889999987776655 469999
Q ss_pred hhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeEEEec
Q 000524 328 ERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1444)
Q Consensus 328 qrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G 407 (1444)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+ .+|+.++|+.+++.+.+|+|++|++|++++.|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR-VTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 99999999999999999999999999999999999999998865434 45555778888899999999999999999988
Q ss_pred ChhhH
Q 000524 408 PRELV 412 (1444)
Q Consensus 408 ~~~~~ 412 (1444)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 65543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=312.53 Aligned_cols=191 Identities=23% Similarity=0.381 Sum_probs=163.1
Q ss_pred ccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc-------ccccceEEEEecCCCCCCCCcH
Q 000524 877 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTV 949 (1444)
Q Consensus 877 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~~~lTv 949 (1444)
|||+++++ |+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 99999999999999999999998653 48999999987531 1235678999999988889999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000524 950 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1444)
Q Consensus 950 ~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgL 1029 (1444)
+|++.+..... .....++.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 1233345688999999998766665 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1030 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1030 D~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
|+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999775 899999999986 57788999999986 7887765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=322.13 Aligned_cols=206 Identities=33% Similarity=0.500 Sum_probs=170.6
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1444)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 35999999999999999999999999999999999999887 9999999988764332 35689999998888889
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
||+||+.++....+. .. .+....++.+++.+||++..++.+
T Consensus 92 tv~e~l~~~~~~~~~-~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 132 (258)
T PRK13548 92 TVEEVVAMGRAPHGL-SR---------------------------------AEDDALVAAALAQVDLAHLAGRDY----- 132 (258)
T ss_pred CHHHHHHhhhcccCC-Cc---------------------------------HHHHHHHHHHHHHcCCHhHhcCCc-----
Confidence 999999885421110 00 001123567888999987666655
Q ss_pred cccchhhhhHHHHHHHHh------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeE
Q 000524 322 RGISGGERKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~------~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1444)
..|||||||||+||+||+ .+|++++|||||+|||+.++..+.+.|+++++..+ .+|+.++|+..++.+++|+|
T Consensus 133 ~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i 211 (258)
T PRK13548 133 PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERG-LAVIVVLHDLNLAARYADRI 211 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhcCEE
Confidence 469999999999999999 59999999999999999999999999999863344 45555778888899999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 000524 396 ILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1444)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999987764
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=335.72 Aligned_cols=199 Identities=24% Similarity=0.391 Sum_probs=169.4
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC-------ccceEEEEcCCCCCCCCCC
Q 000524 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 242 (1444)
|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 899999999999999999999999999999999987 999999998875321 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
|+||+.|+.+... . . +....++++++.+||++..+..+ +
T Consensus 92 v~enl~~~~~~~~--~----------~------------------------~~~~~~~~~l~~~gL~~~~~~~~-----~ 130 (354)
T TIGR02142 92 VRGNLRYGMKRAR--P----------S------------------------ERRISFERVIELLGIGHLLGRLP-----G 130 (354)
T ss_pred HHHHHHHHhhccC--h----------h------------------------HHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999998653210 0 0 01123567899999988777554 4
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+ ++++.++|+.+++..++|+|++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g-~tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFG-IPILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 6999999999999999999999999999999999999999999999875434 455557888889999999999999999
Q ss_pred EEEecChhhHH
Q 000524 403 IVYQGPRELVL 413 (1444)
Q Consensus 403 iv~~G~~~~~~ 413 (1444)
+++.|+.+++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999988774
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=334.39 Aligned_cols=194 Identities=24% Similarity=0.384 Sum_probs=169.1
Q ss_pred ccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc-------ccccceEEEEecCCCCCCCCcH
Q 000524 877 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTV 949 (1444)
Q Consensus 877 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~~~lTv 949 (1444)
|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 99999999999999999999999999999998653 48999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000524 950 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1444)
Q Consensus 950 ~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgL 1029 (1444)
+||+.|+.... .....++.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998865321 12234456899999999998877763 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1030 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1030 D~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
|+.++..+.+.|++++++ |+|||+++|++. ++...+|++++|++ |+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999875 899999999986 68888999999986 799999875
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=315.03 Aligned_cols=194 Identities=30% Similarity=0.410 Sum_probs=162.0
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC------ccceEEEEcCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV------PERTAAYISQHDNHI 238 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1444)
+.+|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 35999999999999999999999999999999999999887 999999999876542 235799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+.+||+||+.++....+... ......++++++.+||++..++.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 135 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKKE----------------------------------REIQRRVGAALRQVGLEHKADAFP-- 135 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh--
Confidence 99999999998754321100 001123567888999987666554
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+ ++|+.++|..+++.+++|++++|
T Consensus 136 ---~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 136 ---EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RG-TTVIVATHDLSLVDRVAHRVIIL 210 (214)
T ss_pred ---hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhcCEEEEe
Confidence 46999999999999999999999999999999999999999999998754 34 45555778888999999999999
Q ss_pred cCCe
Q 000524 399 SDGQ 402 (1444)
Q Consensus 399 ~~G~ 402 (1444)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=333.86 Aligned_cols=190 Identities=24% Similarity=0.390 Sum_probs=167.2
Q ss_pred ccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc-------ccccceEEEEecCCCCCCCCcH
Q 000524 877 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTV 949 (1444)
Q Consensus 877 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~~~lTv 949 (1444)
|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.++|++|+..++|.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 89999999999999999999999999999998653 48999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000524 950 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1444)
Q Consensus 950 ~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgL 1029 (1444)
+||+.|... ...++.++++++.++|.+..+..+ ..||||||||++|||+|+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 112345889999999988777764 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1030 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1030 D~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
|+.++..+++.|+++.++ |+|||+++|++. ++...+|++++|++ |+++..|+.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 213 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPL 213 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCH
Confidence 999999999999999765 899999999986 68899999999986 899999986
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=322.74 Aligned_cols=207 Identities=24% Similarity=0.321 Sum_probs=170.3
Q ss_pred cceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc------cceEEEEcCCC--
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHD-- 235 (1444)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d-- 235 (1444)
.+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 356999999999999999999999999999999999999987 9999999998765422 35699999986
Q ss_pred CCCCCCCHHHHHHHhhhhc-CCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCc-cccc
Q 000524 236 NHIGEMTVRETLAFSARCQ-GVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCAD 313 (1444)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~d 313 (1444)
.+++.+||+||+.+..... ... . .+....++.+++.+||+ ...+
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~~~~---------------------~-------------~~~~~~~~~~l~~~gl~~~~~~ 145 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLTSLD---------------------E-------------SEQKARIAELLDMVGLRSEDAD 145 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCC---------------------H-------------HHHHHHHHHHHHHcCCChhhhh
Confidence 4667899999998754311 000 0 00112356788999996 5555
Q ss_pred ccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcC
Q 000524 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393 (1444)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD 393 (1444)
.. ++.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+...+.+++|
T Consensus 146 ~~-----~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d 219 (265)
T TIGR02769 146 KL-----PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAF-GTAYLFITHDLRLVQSFCQ 219 (265)
T ss_pred CC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHHhc
Confidence 44 45799999999999999999999999999999999999999999999886533 4456667888888999999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 000524 394 DIILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1444)
++++|++|++++.|+.+++.
T Consensus 220 ~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 220 RVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEEeCCEEEEECCHHHHc
Confidence 99999999999999988764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=319.62 Aligned_cols=203 Identities=26% Similarity=0.393 Sum_probs=166.1
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1444)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 35999999999999999999999999999999999999987 9999999998765432 3569999999989999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHh-CCcccccccccCc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLEVCADTMVGDE 319 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 319 (1444)
+||+||+.++..... . + + ....++.+++.+ +|.+..++.
T Consensus 95 ~tv~~~l~~~~~~~~---~-~---~-----------------------------~~~~~~~~l~~~~~l~~~~~~~---- 134 (237)
T PRK11614 95 MTVEENLAMGGFFAE---R-D---Q-----------------------------FQERIKWVYELFPRLHERRIQR---- 134 (237)
T ss_pred CcHHHHHHHhhhccC---h-h---H-----------------------------HHHHHHHHHHHHHHHHHHHhCc----
Confidence 999999987542110 0 0 0 001123445555 355444443
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc
Q 000524 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1444)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1444)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.| |+.++|+.+++.+.+|++++|+
T Consensus 135 -~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~t-iii~sH~~~~~~~~~d~i~~l~ 211 (237)
T PRK11614 135 -AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMT-IFLVEQNANQALKLADRGYVLE 211 (237)
T ss_pred -hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCE-EEEEeCcHHHHHhhCCEEEEEe
Confidence 347999999999999999999999999999999999999999999998764 3445 5557788888999999999999
Q ss_pred CCeEEEecChhhHH
Q 000524 400 DGQIVYQGPRELVL 413 (1444)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1444)
+|++++.|+.+++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999988764
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=317.22 Aligned_cols=207 Identities=23% Similarity=0.291 Sum_probs=167.0
Q ss_pred EeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC----CCCeecEEEECCccCCCCCc-cceEEEEcCCCC--CCC
Q 000524 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS----SLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDN--HIG 239 (1444)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~----~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~ 239 (1444)
+|+|+|+.+++|++++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57899999999999999999999999999999999987 6 9999999998765433 257999999974 556
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000524 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1444)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1444)
.+|+.|++.+.....+... .+....++.+++.+||++.. ...+.
T Consensus 78 ~~t~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~--~~~~~ 121 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLS----------------------------------KQARALILEALEAVGLPDPE--EVLKK 121 (230)
T ss_pred ccCHHHHHHHHHHHcCccH----------------------------------HHHHHHHHHHHHHcCCCchH--HHHhC
Confidence 7899999987543211000 00112356789999997320 11123
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc
Q 000524 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1444)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1444)
.+..|||||||||+||++++.+|++++|||||+|||..+...+.+.|+++++.. +++|+.++|..+++..++|+|++|+
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~ 200 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLF-GTGILLITHDLGVVARIADEVAVMD 200 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 445799999999999999999999999999999999999999999999886533 4455557788889999999999999
Q ss_pred CCeEEEecChhhHH
Q 000524 400 DGQIVYQGPRELVL 413 (1444)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1444)
+|+++..|+.+++.
T Consensus 201 ~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 201 DGRIVERGTVKEIF 214 (230)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=319.10 Aligned_cols=206 Identities=21% Similarity=0.296 Sum_probs=165.0
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CeecEEEECCccCCCC-----CccceEEEEcCCCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHDMGEF-----VPERTAAYISQHDNHI 238 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1444)
.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+. ..+|+|.++|+++... ..++.++|++|++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 48999999999999999999999999999999999998621 1389999999886421 1246799999998777
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCc----ccccc
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE----VCADT 314 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1444)
+ +||+||+.++....+.... .+....++..++.+|+. +..++
T Consensus 101 ~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 L-MSIYDNISYGPKIHGTKDK---------------------------------KKLDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred c-CcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHhCCchhhHHHHhC
Confidence 4 8999999986533211000 00112345567777763 33444
Q ss_pred cccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCe
Q 000524 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1444)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1444)
. ++.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. .+ ++|+.++|+.+++.+++|+
T Consensus 147 ~-----~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 147 N-----ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK--ES-YTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhCCE
Confidence 3 45799999999999999999999999999999999999999999999984 24 4555578888889999999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 000524 395 IILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1444)
|++|++|+++.+|+.+++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=319.43 Aligned_cols=206 Identities=24% Similarity=0.390 Sum_probs=168.7
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCeecEEEECCccCCCC-----CccceEEEEcCCCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNHI 238 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1444)
.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ ...+|+|.++|+++... ..++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 5899999999999999999999999999999999999763 22389999999987642 1246799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCc----ccccc
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE----VCADT 314 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1444)
+ +||+||+.+..+..+.... .+....++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKDK---------------------------------KELDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCcchhhHhhC
Confidence 8 9999999986543210000 00112356778899997 44444
Q ss_pred cccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCe
Q 000524 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1444)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1444)
. ++.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++ + .+|+.++|+..++.+++|+
T Consensus 141 ~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 141 S-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDR 212 (247)
T ss_pred C-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCE
Confidence 3 457999999999999999999999999999999999999999999998764 3 4556678888889999999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 000524 395 IILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1444)
|++|++|+++++|+.+++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=369.12 Aligned_cols=205 Identities=26% Similarity=0.371 Sum_probs=165.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1444)
+++|+|+|++++|||.++|+||||||||||+|+|+|.++|+ +|+|.+||+++.+..+ ++.++||+|++.+|+ .
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-G 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-c
Confidence 45899999999999999999999999999999999999998 9999999999987764 578999999987765 5
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
|++|||.++.. . .. +... +++...+ .++.+ -.|++..||.+|+.+
T Consensus 542 TI~eNi~~~~~-~---~~-e~i~---------------------~al~~a~------l~~~i--~~lp~G~dt~ige~G- 586 (686)
T TIGR03797 542 SIFENIAGGAP-L---TL-DEAW---------------------EAARMAG------LAEDI--RAMPMGMHTVISEGG- 586 (686)
T ss_pred cHHHHHhcCCC-C---CH-HHHH---------------------HHHHHcC------cHHHH--HhccccccccccCCC-
Confidence 99999998632 0 00 1111 1111000 11112 235677899999765
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
.+||||||||++|||||+++|++++||||||+||+.+..+|.+.|+++ ++|+|+ ++|.. ++.+.+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~Ii-ItHr~-~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIV-IAHRL-STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEE-EecCh-HHHHcCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999874 356555 55544 556779999999999
Q ss_pred eEEEecChhhHHH
Q 000524 402 QIVYQGPRELVLE 414 (1444)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1444)
+++++|+++++++
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=329.76 Aligned_cols=217 Identities=18% Similarity=0.199 Sum_probs=171.4
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CeecEEEECCccCCCCCc-------cceEEEEcCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHDMGEFVP-------ERTAAYISQHDN 236 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~-~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1444)
..+|+|||+.|++||+++|+|+||||||||+++|+|.+++.. ..+|+|.++|+++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 569999999999999999999999999999999999986421 238999999998865432 246999999975
Q ss_pred --CCCCCCHHHHHHHhhhhcCC-CchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccc
Q 000524 237 --HIGEMTVRETLAFSARCQGV-GSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCAD 313 (1444)
Q Consensus 237 --~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1444)
+.+.+||.+++.+....... +..+ .. ..+.+..+.++|+.+||++..+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~----------------~~-------------~~~~~~~~~~~L~~~gL~~~~~ 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWW----------------QR-------------FGWRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhcccccc----------------cc-------------HHHHHHHHHHHHHHCCCCChHH
Confidence 57889999999764321100 0000 00 0001234577899999975321
Q ss_pred ccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcC
Q 000524 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393 (1444)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD 393 (1444)
+-+..+..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++.+.. +++|+.++|+...+.+++|
T Consensus 151 --~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 151 --AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN-NTTILLISHDLQMLSQWAD 227 (330)
T ss_pred --HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCC
Confidence 1134456799999999999999999999999999999999999999999999986533 4566668999999999999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 000524 394 DIILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1444)
+|++|++|+|++.|+.+++.
T Consensus 228 ri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 228 KINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999988774
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=318.67 Aligned_cols=211 Identities=22% Similarity=0.328 Sum_probs=171.3
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1444)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 35999999999999999999999999999999999999987 9999999988765432 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
+||+||+.++..... ..+...... . ..+....++++++.+||++..++.+
T Consensus 92 ~tv~~nl~~~~~~~~--~~~~~~~~~-------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (242)
T TIGR03411 92 LTVFENLELALPRDK--SVFASLFFR-------------L-----------SAEEKDRIEEVLETIGLADEADRLA---- 141 (242)
T ss_pred CCHHHHHHHhhhccc--ccccccccc-------------c-----------HHHHHHHHHHHHHHcCCchhhcCCh----
Confidence 999999998643110 000000000 0 0011234677899999987766554
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
+.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ +. +|+.++|..+++.++||+|++|++
T Consensus 142 -~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~-tii~~sH~~~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 142 -GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KH-SVVVVEHDMEFVRSIADKVTVLHQ 217 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CC-EEEEEECCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998753 34 555577888899999999999999
Q ss_pred CeEEEecChhhH
Q 000524 401 GQIVYQGPRELV 412 (1444)
Q Consensus 401 G~iv~~G~~~~~ 412 (1444)
|+++++|+.+++
T Consensus 218 g~~~~~~~~~~~ 229 (242)
T TIGR03411 218 GSVLAEGSLDQV 229 (242)
T ss_pred CeEEeeCCHHHH
Confidence 999999998765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=317.55 Aligned_cols=216 Identities=24% Similarity=0.283 Sum_probs=175.6
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCce---EEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY---ITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~---~~G~i~i~g 922 (1444)
-+.++|+++.++ ++.+|+|+|+.|++||+++|+|+||||||||+++|+|...+.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 367788887763 2469999999999999999999999999999999999764322 379999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 993 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1444)
.++.. ..+++.++|++|++.+++.+|+.||+.+...... ....+...+.++++++.+++.. ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87642 1345678999999999999999999987643321 1122333455677777777643 23333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000524 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1073 (1444)
Q Consensus 994 ~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~ 1073 (1444)
+..||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 467999999999999999999999999999999999999999999999864 799999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000524 1074 RGGQEIYVGPL 1084 (1444)
Q Consensus 1074 ~gg~~~y~G~~ 1084 (1444)
+ |++++.|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14272 222 V-GDLVEHGPT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 799999875
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=363.49 Aligned_cols=211 Identities=28% Similarity=0.437 Sum_probs=178.5
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..++|+|++|.++. ++.+|+|+|+.++|||++||+||||||||||++.|.|..++ .+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEe
Confidence 46999999999862 34699999999999999999999999999999999997663 58999999988
Q ss_pred CCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCC
Q 000524 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-------PLIQSLVGLP 994 (1444)
Q Consensus 925 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~ 994 (1444)
+++ ..+++.++||+|+..++. -||+||+.++. + +.++ +.++++++..++. +..||.+|.
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~----~-~at~----eei~~a~k~a~~~d~I~~lp~g~dt~vge- 461 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR----P-DATD----EEIEEALKLANAHEFIANLPDGYDTIVGE- 461 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC----C-CCCH----HHHHHHHHHhChHHHHHhCcccccceecC-
Confidence 664 456788999999999987 89999998762 1 1222 2355566555443 356888884
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
+...||||||||++||||++++|+||+||||||+||+.++..|++.++++. +++|+++++|+++ ....+|+|++|++
T Consensus 462 ~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~ 538 (567)
T COG1132 462 RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN 538 (567)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC
Confidence 456899999999999999999999999999999999999999999999886 5789999999986 4455999999996
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|+++..|..
T Consensus 539 -G~i~e~G~h 547 (567)
T COG1132 539 -GRIVERGTH 547 (567)
T ss_pred -CEEEEecCH
Confidence 789999985
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=320.29 Aligned_cols=206 Identities=22% Similarity=0.328 Sum_probs=170.9
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC----------------ccceE
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV----------------PERTA 228 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~----------------~~~~~ 228 (1444)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 35999999999999999999999999999999999999987 999999998875321 14579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhh-cCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhC
Q 000524 229 AYISQHDNHIGEMTVRETLAFSARC-QGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (1444)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (1444)
+|++|++.+++.+||.||+.++... .+.. . .+....++++++.+|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~g 135 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGMA-R---------------------------------AEAEKRAMELLDMVG 135 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHHHcC
Confidence 9999999899999999999875321 1000 0 001123566789999
Q ss_pred CcccccccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchh
Q 000524 308 LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPE 387 (1444)
Q Consensus 308 L~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~ 387 (1444)
|++..+.. ++.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++.. +++++.++|..++
T Consensus 136 l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tiiivsH~~~~ 209 (252)
T TIGR03005 136 LADKADHM-----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEH-DLTMLLVTHEMGF 209 (252)
T ss_pred ChhHhhcC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHH
Confidence 98766644 35799999999999999999999999999999999999999999999886533 4555567788888
Q ss_pred HHhhcCeEEEEcCCeEEEecChhhHH
Q 000524 388 TYDLFDDIILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 388 ~~~~fD~vilL~~G~iv~~G~~~~~~ 413 (1444)
+.+++|++++|++|++++.|+.+++.
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999987763
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=322.92 Aligned_cols=216 Identities=23% Similarity=0.289 Sum_probs=179.9
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
-+.++|+++.++.. ....+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 37889998887411 12359999999999999999999999999999999999875 3589999999876
Q ss_pred Cc---ccccceEEEEecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000524 926 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 1001 (1444)
Q Consensus 926 ~~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1001 (1444)
.. ...++.+||++|++. .++..||.||+.+..... ....+...+.++++++.++|.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234567999999974 566789999998765432 123334445688999999998877765 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEE
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1080 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y 1080 (1444)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++.. + ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 9999999999863 4 46999999986 78999
Q ss_pred EcCC
Q 000524 1081 VGPL 1084 (1444)
Q Consensus 1081 ~G~~ 1084 (1444)
.|+.
T Consensus 221 ~g~~ 224 (277)
T PRK13642 221 EAAP 224 (277)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=320.89 Aligned_cols=221 Identities=21% Similarity=0.278 Sum_probs=172.6
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1444)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.++++
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 45999999999999999999999999999999999999987 9999999998765432 2358899999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
+||+||+.++....... +...... + .+..+ ....+....++.+++.+||++..+..+
T Consensus 95 ~tv~enl~~~~~~~~~~---~~~~~~~------~-~~~~~---------~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 151 (255)
T PRK11300 95 MTVIENLLVAQHQQLKT---GLFSGLL------K-TPAFR---------RAESEALDRAATWLERVGLLEHANRQA---- 151 (255)
T ss_pred CcHHHHHHHhhhccccc---hhhhhhc------c-ccccc---------cchhHHHHHHHHHHHhCChhhhhhCCh----
Confidence 99999999864311000 0000000 0 00000 000011234567889999987666554
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++.+++|++++|++
T Consensus 152 -~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 152 -GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEH-NVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4699999999999999999999999999999999999999999999876532 45555577888899999999999999
Q ss_pred CeEEEecChhhHH
Q 000524 401 GQIVYQGPRELVL 413 (1444)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1444)
|++++.|+.+++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999987763
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=316.10 Aligned_cols=201 Identities=25% Similarity=0.340 Sum_probs=166.9
Q ss_pred EeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc--eEEEEEEEcCccCCcccc-cceEEEEecCCC--CCCCCc
Q 000524 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG--YITGNITISGYPKKQETF-ARISGYCEQNDI--HSPFVT 948 (1444)
Q Consensus 874 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~gyv~q~~~--~~~~lT 948 (1444)
+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999986531 158999999988654322 357899999984 557789
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc---ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000524 949 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK---PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025 (1444)
Q Consensus 949 v~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~---~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEP 1025 (1444)
+.|++.+...... . ..+..++.++++++.+++. +..+.. +..||||||||++||++|+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG--K-LSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC--c-cHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543321 1 1233345689999999997 344444 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1026 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1026 TsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
|+|||..+...+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999764 899999999986 67788999999986 899988875
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=317.87 Aligned_cols=214 Identities=21% Similarity=0.296 Sum_probs=175.1
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc--eEEEEEEEcC
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG--YITGNITISG 922 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~--~~~G~i~i~g 922 (1444)
..++++|+++.++ +.+|+|+|+.+++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 3578899987762 24899999999999999999999999999999999986531 1579999999
Q ss_pred ccCCcccc-cceEEEEecCCC--CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc---cccccccCCCC
Q 000524 923 YPKKQETF-ARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP---LIQSLVGLPGV 996 (1444)
Q Consensus 923 ~~~~~~~~-~~~~gyv~q~~~--~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~vg~~~~ 996 (1444)
.++..... ++.++|++|++. +.+..|+.+++.+.+.... ... .++.++++++.++|.+ ..++. .
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 87653222 356899999974 4466899998866433221 111 2245889999999976 23443 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecC
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1075 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~g 1075 (1444)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~- 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH- 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 679999999999999999999999999999999999999999999998764 899999999986 57788999999985
Q ss_pred cEEEEEcCC
Q 000524 1076 GQEIYVGPL 1084 (1444)
Q Consensus 1076 g~~~y~G~~ 1084 (1444)
|++++.|+.
T Consensus 217 G~i~~~~~~ 225 (254)
T PRK10418 217 GRIVEQGDV 225 (254)
T ss_pred CEEEEecCH
Confidence 799998875
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=308.07 Aligned_cols=173 Identities=24% Similarity=0.305 Sum_probs=135.7
Q ss_pred eeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEEecCCCCCCCCcHHHHHH
Q 000524 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLL 954 (1444)
Q Consensus 875 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~ 954 (1444)
|.==.+.|..||+++++||||-||||+.++|+|..++. +|+ .. .-.++|=||--.-....||++-|.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd--eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC--CCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 44456788999999999999999999999999976543 454 11 123577777655556789999775
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000524 955 YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034 (1444)
Q Consensus 955 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~ 1034 (1444)
-...-+.. ..-+..++++-++|++..+..+ .+|||||.|||+||.+|.+++++.+||||++.||++.+
T Consensus 424 ~~~~~~~~-------~s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFG-------SSYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhcc-------cchhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 43222111 1123467888999999988874 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEe
Q 000524 1035 AIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMK 1073 (1444)
Q Consensus 1035 ~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~ 1073 (1444)
..+-++||+...+ +.|.+++-|+... +--..||+++..
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999998754 7899999999652 334578888875
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=324.33 Aligned_cols=203 Identities=27% Similarity=0.391 Sum_probs=168.3
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc----cceEEEEcCCCC-CCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDN-HIGE 240 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~-~~~~ 240 (1444)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 4899999999999999999999999999999999999987 9999999998865322 357999999975 4677
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
.||+||+.|+.+..+.. . .+....++.+++.+||++..++.+
T Consensus 93 ~tv~enl~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gl~~~~~~~~---- 134 (274)
T PRK13644 93 RTVEEDLAFGPENLCLP-P---------------------------------IEIRKRVDRALAEIGLEKYRHRSP---- 134 (274)
T ss_pred chHHHHHHhhHHHcCCC-H---------------------------------HHHHHHHHHHHHHCCCHHHhcCCc----
Confidence 89999998865322110 0 001123567889999988777655
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.. .+ ++|+.++|+..++ ..+|+|++|++
T Consensus 135 -~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g-~til~~tH~~~~~-~~~d~v~~l~~ 210 (274)
T PRK13644 135 -KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KG-KTIVYITHNLEEL-HDADRIIVMDR 210 (274)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CC-CEEEEEecCHHHH-hhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998764 34 4555567777777 56999999999
Q ss_pred CeEEEecChhhHH
Q 000524 401 GQIVYQGPRELVL 413 (1444)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1444)
|++++.|+.+++.
T Consensus 211 G~i~~~g~~~~~~ 223 (274)
T PRK13644 211 GKIVLEGEPENVL 223 (274)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988764
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=317.87 Aligned_cols=219 Identities=25% Similarity=0.266 Sum_probs=176.3
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 922 (1444)
-+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..... ..+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 378899988763 246999999999999999999999999999999999964321 1379999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1444)
.++.. ...++.++|++|++.+++. ||+||+.|....+.. ......++.+.++++.+++.+....... ....
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLH-DSAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhh-cChh
Confidence 87642 2335678999999988874 999999987554321 1223334567888999888542111111 1246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~ 225 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999875 689999999986 57788999999986 79
Q ss_pred EEEEcCC
Q 000524 1078 EIYVGPL 1084 (1444)
Q Consensus 1078 ~~y~G~~ 1084 (1444)
++..|+.
T Consensus 226 i~~~g~~ 232 (253)
T PRK14261 226 LIEFDKT 232 (253)
T ss_pred EEEcCCH
Confidence 9998885
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=287.22 Aligned_cols=206 Identities=27% Similarity=0.385 Sum_probs=177.4
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1444)
..+|+|+|+.|.+||.+.++||||||||||||+++|..+|+ .|+|++||.+++- |...-|.|+|++.++|=+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~g--PgaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEG--PGAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccC--CCccceeEeccCccchhhHHH
Confidence 55899999999999999999999999999999999999998 9999999998864 344568999999999999999
Q ss_pred HHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccccc
Q 000524 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1444)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1444)
||++|+.+++|.++. . ...++...+...||++..+.. +-.|
T Consensus 93 dNvafgL~l~Gi~k~-------~---------------------------R~~~a~q~l~~VgL~~~~~~~-----i~qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA-------Q---------------------------RREIAHQMLALVGLEGAEHKY-----IWQL 133 (259)
T ss_pred HHHHHHHHhcCCCHH-------H---------------------------HHHHHHHHHHHhCcccccccc-----eEee
Confidence 999999999886432 1 123456788999999876644 4579
Q ss_pred chhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc--CCe
Q 000524 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (1444)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~--~G~ 402 (1444)
||||||||.|||||..+|+.|+||||+.+||.-|+.++...|-++.+..++ -+..++|..+|..-+++++++|+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk-~~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGK-QVLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCC-eEEEEeccHHHHHhhhheeEEecCCCce
Confidence 999999999999999999999999999999999999999988887765554 45558899999999999999998 589
Q ss_pred EEEecChhhHHHH
Q 000524 403 IVYQGPRELVLEF 415 (1444)
Q Consensus 403 iv~~G~~~~~~~~ 415 (1444)
|+..=+.+-...|
T Consensus 213 vv~~~~~df~rR~ 225 (259)
T COG4525 213 VVERLPLDFARRY 225 (259)
T ss_pred eeEecCCCHHHHh
Confidence 9988777644444
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=323.68 Aligned_cols=205 Identities=25% Similarity=0.353 Sum_probs=170.7
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCC-CCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN-HIGEM 241 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1444)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 4899999999999999999999999999999999999987 9999999998764322 356899999963 34468
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
||.||+.++....+... .+....++.+++.+||.+..++.+
T Consensus 95 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 135 (277)
T PRK13652 95 TVEQDIAFGPINLGLDE----------------------------------ETVAHRVSSALHMLGLEELRDRVP----- 135 (277)
T ss_pred cHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCCc-----
Confidence 99999987653221100 001124567899999987777655
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
+.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.... +++|+.++|..+++.+.+|+|++|++|
T Consensus 136 ~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 136 HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETY-GMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999986533 455566778888999999999999999
Q ss_pred eEEEecChhhHH
Q 000524 402 QIVYQGPRELVL 413 (1444)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1444)
++++.|+.+++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998874
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=311.67 Aligned_cols=211 Identities=23% Similarity=0.345 Sum_probs=175.3
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.+... .+.+.+|+|+||++++|+++||+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5678888776310 012569999999999999999999999999999999999765 35899999998764
Q ss_pred cc------cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000524 927 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000 (1444)
Q Consensus 927 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1000 (1444)
.. .+++.++|++|++.+++.+|+.||+.+...... ....++..+.++++++.++|.+..++. ++.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCC
Confidence 21 245679999999988888999999988654321 123344455689999999998877766 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCcEE
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1078 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~ 1078 (1444)
+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ +.+.+|++++|++ |++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999876 4899999999985 5689999999986 553
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=324.37 Aligned_cols=205 Identities=25% Similarity=0.344 Sum_probs=169.0
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC----ccceEEEEcCCCC-CCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV----PERTAAYISQHDN-HIG 239 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 239 (1444)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 45999999999999999999999999999999999999987 999999999876422 2467999999974 344
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000524 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1444)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1444)
..||.||+.|+....+... .+....++++++.+||++..++.+
T Consensus 100 ~~~v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~--- 142 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPP----------------------------------EEIRERVDESLKKVGMYEYRRHAP--- 142 (280)
T ss_pred cccHHHHHHhhHhhcCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc---
Confidence 5799999998754321100 001224577899999988777665
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc
Q 000524 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1444)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1444)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.| |+.++|...++.. +|++++|+
T Consensus 143 --~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~t-illvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 143 --HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGIT-IILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecChHHHhc-CCEEEEEE
Confidence 4699999999999999999999999999999999999999999999986533444 5556777777765 99999999
Q ss_pred CCeEEEecChhhHH
Q 000524 400 DGQIVYQGPRELVL 413 (1444)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1444)
+|+++++|+.+++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (280)
T PRK13633 219 SGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999998875
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=316.90 Aligned_cols=219 Identities=20% Similarity=0.242 Sum_probs=175.6
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 922 (1444)
.+.++|+++.+. ++.+|+|+|++|++|++++|+||||||||||+++|+|...+. +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 367888887763 235999999999999999999999999999999999976532 2369999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1444)
.++.. ...++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+....... ....
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLH-KSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhh-CCcc
Confidence 87532 1345679999999988875 999999887543311 1122234457788888887642222211 2246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 899999999999999999999999999999999999999999999984 5899999999986 57788999999985 79
Q ss_pred EEEEcCC
Q 000524 1078 EIYVGPL 1084 (1444)
Q Consensus 1078 ~~y~G~~ 1084 (1444)
+++.|+.
T Consensus 224 i~~~~~~ 230 (251)
T PRK14249 224 LVEYGRT 230 (251)
T ss_pred EEEeCCH
Confidence 9999875
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=318.41 Aligned_cols=215 Identities=25% Similarity=0.265 Sum_probs=175.2
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc-
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP- 924 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~- 924 (1444)
-+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccc
Confidence 378899988763 23599999999999999999999999999999999998653 47999999987
Q ss_pred ----CCcc---c----ccceEEEEecCCC--CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 000524 925 ----KKQE---T----FARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSL 990 (1444)
Q Consensus 925 ----~~~~---~----~~~~~gyv~q~~~--~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ 990 (1444)
+... . .++.++|++|+.. +.+.+|+.|++.+...... ..........+.++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2346899999974 5677899999876432111 1122234456789999999974 45544
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceE
Q 000524 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDEL 1069 (1444)
Q Consensus 991 vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v 1069 (1444)
+..||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|++++++ |.|||+++|++. .+.+.+|++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 4579999999999999999999999999999999999999999999998765 899999999986 566789999
Q ss_pred EEEecCcEEEEEcCC
Q 000524 1070 FLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1070 ~ll~~gg~~~y~G~~ 1084 (1444)
++|++ |++++.|+.
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 899999875
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=321.93 Aligned_cols=204 Identities=22% Similarity=0.301 Sum_probs=167.7
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC---ccceEEEEcCCCC-CCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---PERTAAYISQHDN-HIGEM 241 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (1444)
.+|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 4899999999999999999999999999999999999987 999999999876432 2457999999974 67888
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
|+++|+.|.....+... .+....++.+++.+||.+..++.+
T Consensus 100 ~v~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 140 (269)
T PRK13648 100 IVKYDVAFGLENHAVPY----------------------------------DEMHRRVSEALKQVDMLERADYEP----- 140 (269)
T ss_pred cHHHHHHhhHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCc-----
Confidence 99999988654321100 001123567789999987666544
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
+.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++....+.|+ +.++|...++.. +|+|++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~ti-iivtH~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITI-ISITHDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE-EEEecCchHHhc-CCEEEEEECC
Confidence 47999999999999999999999999999999999999999999998764334454 446666677765 9999999999
Q ss_pred eEEEecChhhHH
Q 000524 402 QIVYQGPRELVL 413 (1444)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1444)
++++.|+.+++.
T Consensus 219 ~i~~~g~~~~~~ 230 (269)
T PRK13648 219 TVYKEGTPTEIF 230 (269)
T ss_pred EEEEecCHHHHh
Confidence 999999988764
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=349.77 Aligned_cols=218 Identities=25% Similarity=0.321 Sum_probs=183.2
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
++++|++++++ ++.+|+|+|+++++||++||+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 77888887763 24699999999999999999999999999999999998653 4899999998754
Q ss_pred cc----cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000524 927 QE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 1001 (1444)
Q Consensus 927 ~~----~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1001 (1444)
.. ..++.++|++|++.+++.+||+|++.|....+.. ...+.+..++.++++++.++|.+..+..+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 21 1245689999999888999999999886432211 11223334456889999999988777664 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEE
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1081 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~ 1081 (1444)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|.|||+++|++. ++.+.||++++|++ |+++..
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~ 222 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 57789999999986 799999
Q ss_pred cCCCc
Q 000524 1082 GPLGR 1086 (1444)
Q Consensus 1082 G~~~~ 1086 (1444)
|+..+
T Consensus 223 ~~~~~ 227 (501)
T PRK10762 223 REVAD 227 (501)
T ss_pred cCcCc
Confidence 98754
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=317.94 Aligned_cols=219 Identities=22% Similarity=0.290 Sum_probs=178.5
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCC---ceEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 922 (1444)
.+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 478999998874 24699999999999999999999999999999999997542 13589999999
Q ss_pred ccCCc----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000524 923 YPKKQ----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 998 (1444)
Q Consensus 923 ~~~~~----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 998 (1444)
.++.. ...++.++|++|++.+++ .|++||+.+...... ....++....+.++++.+++.+..++... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87642 134567899999988887 899999987643221 12333334456788999998753322211 12468
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEE
Q 000524 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1078 (1444)
Q Consensus 999 lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~ 1078 (1444)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999986 57889999999986 799
Q ss_pred EEEcCC
Q 000524 1079 IYVGPL 1084 (1444)
Q Consensus 1079 ~y~G~~ 1084 (1444)
+..|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 999885
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=314.11 Aligned_cols=196 Identities=24% Similarity=0.337 Sum_probs=163.5
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC------ccceEEEEcCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV------PERTAAYISQHDNHI 238 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1444)
+.+|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 35999999999999999999999999999999999999987 999999999876432 135799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+.+||+||+.+.....+... .+....++.+++.+||.+..++.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 135 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGASG----------------------------------DDIRRRVSAALDKVGLLDKAKNFP-- 135 (222)
T ss_pred ccccHHHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc--
Confidence 99999999988654321100 001123456788899987666544
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
..|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.+ . +++++.++|+.+++...+|+|++|
T Consensus 136 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l 210 (222)
T PRK10908 136 ---IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-V-GVTVLMATHDIGLISRRSYRMLTL 210 (222)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999998754 3 455666788888999999999999
Q ss_pred cCCeEE
Q 000524 399 SDGQIV 404 (1444)
Q Consensus 399 ~~G~iv 404 (1444)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999985
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=316.91 Aligned_cols=219 Identities=18% Similarity=0.226 Sum_probs=177.5
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCC--c-eEEEEEEEc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG--G-YITGNITIS 921 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~-~~~G~i~i~ 921 (1444)
..+..+++++.+. ++.+|+|+|+.++|||+++|+|+||||||||+++|+|...+ + +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFYG-------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEeC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 3466677666552 35699999999999999999999999999999999997643 1 258999999
Q ss_pred CccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000524 922 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 996 (1444)
Q Consensus 922 g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1444)
|.++.. ..+++.++|++|++.++ .+|+.||+.+....+. . .....+.++++++.++|.+..+...+ ...
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCc
Confidence 987632 13456799999998877 5999999988755432 1 12234568899999998654332222 234
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe---
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK--- 1073 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~--- 1073 (1444)
+.||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++. +++|||+++|++. ++.+.+|++++|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 6899999999999999999999999999999999999999999999985 4799999999986 5788999999996
Q ss_pred ----cCcEEEEEcCC
Q 000524 1074 ----RGGQEIYVGPL 1084 (1444)
Q Consensus 1074 ----~gg~~~y~G~~ 1084 (1444)
++|+++..|+.
T Consensus 226 ~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 226 SQGTRTGYLVEMGPT 240 (261)
T ss_pred ccccCCceEEEeCCH
Confidence 46899999985
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=327.02 Aligned_cols=211 Identities=20% Similarity=0.284 Sum_probs=168.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCeecEEEECCccCCCC-----CccceEEEEcCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1444)
..+|+|+|+.|++|++++|+|||||||||||++|+|..++. ...+|+|.++|+++... ..++.++||+|++.+
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 35899999999999999999999999999999999998631 02389999999998632 235679999999877
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccccc
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1444)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1444)
+ +.||+||+.|+....+... .+ ..+..++.+++.++|.+..++.++
T Consensus 175 ~-~~ti~eNi~~~~~~~~~~~-~~--------------------------------~~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 F-EMSIFDNVAYGPRNNGIND-RK--------------------------------ILEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred C-CCcHHHHHHhHHHhcCCCh-HH--------------------------------HHHHHHHHHHHHcCCcchhhhhhh
Confidence 7 4899999998643321100 00 001123456677777654455665
Q ss_pred CccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEE
Q 000524 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1444)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1444)
. ....|||||||||+||||++.+|+|++|||||+|||+.+...+.++|+++.+ + .+|+.++|....+.+.+|+|++
T Consensus 221 ~-~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~-~Tii~iTH~l~~i~~~~Driiv 296 (329)
T PRK14257 221 K-AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--K-YSIIIVTHSMAQAQRISDETVF 296 (329)
T ss_pred C-CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEE
Confidence 4 4558999999999999999999999999999999999999999999998753 3 4566678888888999999999
Q ss_pred EcCCeEEEecChhhHH
Q 000524 398 LSDGQIVYQGPRELVL 413 (1444)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1444)
|++|++++.|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999874
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=317.52 Aligned_cols=200 Identities=24% Similarity=0.375 Sum_probs=166.2
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC---ccceEEEEcCCCCCCCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---PERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (1444)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++ .|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 5899999999999999999999999999999999999987 999999998875432 2457999999987776 69
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCc-ccccccccCccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMVGDEMI 321 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 321 (1444)
|+||+.++....+ . ....++.+++.+||+ +..++ ..
T Consensus 93 v~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~ 129 (241)
T PRK14250 93 VKDNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYATR-----DV 129 (241)
T ss_pred HHHHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhhC-----Cc
Confidence 9999987532110 0 001245678889996 34443 34
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
..|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++....+. +|+.++|+.+++.+++|+|++|++|
T Consensus 130 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~-tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNL-TVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC-EEEEEeccHHHHHHhCCEEEEEeCC
Confidence 579999999999999999999999999999999999999999999987653344 5555788888899999999999999
Q ss_pred eEEEecChhhHH
Q 000524 402 QIVYQGPRELVL 413 (1444)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1444)
+++..|+.+++.
T Consensus 209 ~i~~~~~~~~~~ 220 (241)
T PRK14250 209 ILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCHHHHh
Confidence 999999988763
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=312.31 Aligned_cols=194 Identities=30% Similarity=0.444 Sum_probs=160.1
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC---ccceEEEEcCCCC-CCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---PERTAAYISQHDN-HIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 46999999999999999999999999999999999999987 999999998876432 2357999999874 4678
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
+||+||+.++....+... .+....++.+++.+||++..+..+
T Consensus 91 ~t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 132 (211)
T cd03225 91 PTVEEEVAFGLENLGLPE----------------------------------EEIEERVEEALELVGLEGLRDRSP---- 132 (211)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 999999988643221000 001123566788999987666544
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++. . +++|+.++|+.+++..++|+|++|++
T Consensus 133 -~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 133 -FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-E-GKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999998865 3 45566678888899999999999999
Q ss_pred Ce
Q 000524 401 GQ 402 (1444)
Q Consensus 401 G~ 402 (1444)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=321.91 Aligned_cols=215 Identities=20% Similarity=0.277 Sum_probs=175.2
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--G-GYITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 922 (1444)
.+.++|+++.++ ...+|+|+|+.|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 588999988773 2359999999999999999999999999999999999642 1 12589999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 993 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1444)
.++.. ...++.++|++|++.+++. ||.||+.+....+.. .+....++.+.++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1245679999999988874 999999986543211 122233456788899988742 23332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000524 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1073 (1444)
Q Consensus 994 ~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~ 1073 (1444)
+..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 467999999999999999999999999999999999999999999999865 689999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000524 1074 RGGQEIYVGPL 1084 (1444)
Q Consensus 1074 ~gg~~~y~G~~ 1084 (1444)
+ |+++..|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 6 799999875
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=320.09 Aligned_cols=215 Identities=20% Similarity=0.256 Sum_probs=174.9
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--G-GYITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 922 (1444)
-+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 478999988774 2359999999999999999999999999999999999632 1 13579999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 993 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1444)
.++.. ..+++.++|++|++.+++. |++||+.+...... .......++.++++++.+++.+ ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87642 1245679999999888874 99999987643221 1112233455788899998853 22332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000524 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1073 (1444)
Q Consensus 994 ~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~ 1073 (1444)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 467999999999999999999999999999999999999999999999865 689999999986 5788999999998
Q ss_pred cCcEEEEEcCC
Q 000524 1074 RGGQEIYVGPL 1084 (1444)
Q Consensus 1074 ~gg~~~y~G~~ 1084 (1444)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 5 799999875
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-32 Score=349.48 Aligned_cols=212 Identities=27% Similarity=0.414 Sum_probs=178.0
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..++++|++|.++. +.+.+|+|+|+.++|||++||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p--~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEe
Confidence 46999999999852 124599999999999999999999999999999999998664 48999999998
Q ss_pred CCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000524 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 994 (1444)
Q Consensus 925 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1444)
+++ ..+++.++||+|++.+++ .|++||+.+.. + +.+ ++.++++++..++.+. .|+.+|..
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN----P-GAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC----C-CCC----HHHHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 654 356778999999988876 69999997631 1 222 2346677777776554 46666654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|+++ ....||++++|++
T Consensus 591 -g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~ 666 (694)
T TIGR01846 591 -GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEK 666 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeC
Confidence 46899999999999999999999999999999999999999999999984 5899999999985 4567999999986
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|++++.|+.
T Consensus 667 -G~i~~~g~~ 675 (694)
T TIGR01846 667 -GQIAESGRH 675 (694)
T ss_pred -CEEEEeCCH
Confidence 899999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=319.56 Aligned_cols=206 Identities=19% Similarity=0.304 Sum_probs=165.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CeecEEEECCccCCCCC-----ccceEEEEcCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHDMGEFV-----PERTAAYISQHDNH 237 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~--~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1444)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|.. ..+|+|.++|+++.... .++.++|++|++.+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 358999999999999999999999999999999999987510 13899999998875321 24569999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCc----cccc
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE----VCAD 313 (1444)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 313 (1444)
++ +||+||+.|+.+..+... . +....++.+++.+|+. +..+
T Consensus 105 ~~-~tv~enl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGANK----------K------------------------DLDGVVENALRSAALWDETSDRLK 149 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCCcchhhhhc
Confidence 77 899999998654321100 0 0012356678888874 2334
Q ss_pred ccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcC
Q 000524 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393 (1444)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD 393 (1444)
+ .++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.+++|
T Consensus 150 ~-----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~-~tiiivsH~~~~~~~~~d 221 (258)
T PRK14268 150 S-----PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--D-YTIVIVTHNMQQAARISD 221 (258)
T ss_pred C-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHHhCC
Confidence 3 3457999999999999999999999999999999999999999999998742 4 555667888888999999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 000524 394 DIILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1444)
+|++|++|++++.|+.+++.
T Consensus 222 ~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 222 YTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=314.28 Aligned_cols=204 Identities=27% Similarity=0.414 Sum_probs=171.2
Q ss_pred EeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCHHH
Q 000524 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRE 245 (1444)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (1444)
+|+|+|+.++|||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|++|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999997 9999999998765432 467999999998999999999
Q ss_pred HHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccccc
Q 000524 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1444)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1444)
|+.++....+... .+....++++++.+||.+..++.+ +.||
T Consensus 91 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 131 (235)
T cd03299 91 NIAYGLKKRKVDK----------------------------------KEIERKVLEIAEMLGIDHLLNRKP-----ETLS 131 (235)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHHhcCc-----ccCC
Confidence 9988643221000 001123456788999987777655 4699
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 000524 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1444)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~ 405 (1444)
|||||||+||+|++.+|++++|||||+|||+.++..+.+.|++++...+.| ++.++|..+++.+.+|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~t-ili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT-VLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986533445 5556777788899999999999999999
Q ss_pred ecChhhHH
Q 000524 406 QGPRELVL 413 (1444)
Q Consensus 406 ~G~~~~~~ 413 (1444)
.|+.+++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987664
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=316.41 Aligned_cols=215 Identities=25% Similarity=0.337 Sum_probs=175.1
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCC--c-eEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG--G-YITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g 922 (1444)
.+.++|+++.+. .+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 378899988773 24699999999999999999999999999999999997641 1 2589999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 993 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1444)
.+... ...++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.. ..+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 143 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDR---- 143 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhcc----
Confidence 87532 124567899999988776 799999987643321 1122333456788999999853 2232
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000524 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1073 (1444)
Q Consensus 994 ~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~ 1073 (1444)
....||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 144 -~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 144 -NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred -ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 2468999999999999999999999999999999999999999999999854 799999999986 5788899999998
Q ss_pred cCcEEEEEcCC
Q 000524 1074 RGGQEIYVGPL 1084 (1444)
Q Consensus 1074 ~gg~~~y~G~~ 1084 (1444)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 5 799988875
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=311.36 Aligned_cols=195 Identities=25% Similarity=0.371 Sum_probs=163.0
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 000524 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1444)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1444)
|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999987 9999999998765432 367999999999999999999998
Q ss_pred HhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccccchhh
Q 000524 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1444)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1444)
++..... ... + +.+..++++++.+||++..++.+ ..|||||
T Consensus 93 ~~~~~~~-~~~--------~-------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 133 (211)
T cd03298 93 LGLSPGL-KLT--------A-------------------------EDRQAIEVALARVGLAGLEKRLP-----GELSGGE 133 (211)
T ss_pred ccccccc-Ccc--------H-------------------------HHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHH
Confidence 7542110 000 0 01123567889999987776654 4799999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeEEEec
Q 000524 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1444)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G 407 (1444)
|||++||++++.+|++++|||||+|||..++..+.+.|+++++..+ .+|+.++|+..++.+++|++++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETK-MTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999999998865334 45555788888999999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=322.55 Aligned_cols=205 Identities=21% Similarity=0.310 Sum_probs=166.5
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC-------ccceEEEEcCCCC-
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHDN- 236 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~- 236 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35899999999999999999999999999999999999987 999999999875421 2356999999862
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcc-ccccc
Q 000524 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV-CADTM 315 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (1444)
.+...||+||+.+.....+... .+....++.+++.+||.. ..+..
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 142 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVSQ----------------------------------EEAEALAREKLALVGISESLFEKN 142 (280)
T ss_pred hhccccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 3334799999988643221100 001123566788899963 44443
Q ss_pred ccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeE
Q 000524 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1444)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1444)
++.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+ ++|+.++|...++.+++|++
T Consensus 143 -----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tiiivsH~~~~~~~~~d~i 215 (280)
T PRK13649 143 -----PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SG-MTIVLVTHLMDDVANYADFV 215 (280)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeccHHHHHHhCCEE
Confidence 457999999999999999999999999999999999999999999998864 34 45555778888888999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 000524 396 ILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1444)
++|++|++++.|+.+++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=313.50 Aligned_cols=206 Identities=28% Similarity=0.333 Sum_probs=172.3
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC-ccceEEEEcCCCCCCCCCCH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-PERTAAYISQHDNHIGEMTV 243 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV 243 (1444)
+++|+|+|+.++||++++|+||||||||||+++|+|.++|+ +|+|+++|+++.+.. .++.++|++|++..++.+|+
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 35999999999999999999999999999999999999987 999999999876533 24679999999988889999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1444)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1444)
+||+.+.....+... ......++.+++.+||++..++.+ ..
T Consensus 90 ~~nl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (232)
T cd03300 90 FENIAFGLRLKKLPK----------------------------------AEIKERVAEALDLVQLEGYANRKP-----SQ 130 (232)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 999988654321100 001123567889999987776554 47
Q ss_pred cchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000524 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1444)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1444)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++....+.|+|+ ++|...++.+.+|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii-~sh~~~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF-VTHDQEEALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE-EeCCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999886533445554 67777888999999999999999
Q ss_pred EEecChhhHH
Q 000524 404 VYQGPRELVL 413 (1444)
Q Consensus 404 v~~G~~~~~~ 413 (1444)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999877663
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=312.76 Aligned_cols=197 Identities=23% Similarity=0.318 Sum_probs=166.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .+.++|++|++.+++.+|++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 46999999999999999999999999999999999999987 999999998775422 35799999999889999999
Q ss_pred HHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccccc
Q 000524 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1444)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1444)
||+.+.....+.. +..+..+++.+||++..|..+ ..|
T Consensus 89 ~~~~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~~L 125 (223)
T TIGR03740 89 ENLKVHTTLLGLP--------------------------------------DSRIDEVLNIVDLTNTGKKKA-----KQF 125 (223)
T ss_pred HHHHHHHHHcCCC--------------------------------------HHHHHHHHHHcCCcHHHhhhH-----hhC
Confidence 9998764322100 012456788899987666544 469
Q ss_pred chhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeEE
Q 000524 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1444)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv 404 (1444)
|||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.. .+.| |+.++|+..++.+.+|+|++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~t-iii~sH~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGIT-VILSSHILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCE-EEEEcCCHHHHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999998754 3444 555677778889999999999999999
Q ss_pred EecChh
Q 000524 405 YQGPRE 410 (1444)
Q Consensus 405 ~~G~~~ 410 (1444)
+.|+..
T Consensus 204 ~~~~~~ 209 (223)
T TIGR03740 204 YQGKIN 209 (223)
T ss_pred EecChh
Confidence 999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=308.71 Aligned_cols=202 Identities=23% Similarity=0.276 Sum_probs=172.4
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
-+.++|+++.++ ++.+|+++|+.+++||+++|+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 478899987763 23599999999999999999999999999999999998653 479999999876
Q ss_pred CcccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000524 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 1005 (1444)
Q Consensus 926 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1005 (1444)
.....++.++|++|++.+++.+|+.|++.+....+. .. .++.++++++.++|.+..++.+ ..||+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543344568999999988888999999987654321 11 2234678899999987777664 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 1006 Rl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
|++||++++.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|++. ++.+.+|+++++..
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 999999999999999999999999999999999999998888999999999996 68899999999863
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=310.24 Aligned_cols=224 Identities=22% Similarity=0.310 Sum_probs=180.7
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCC-C-c-eEEEEEEEcCc
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT-G-G-YITGNITISGY 923 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~-~-~-~~~G~i~i~g~ 923 (1444)
++.+|++.++.... +...+++||||++++||++||+|.|||||||+.++|.|... + + ..+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~~---------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTDA---------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecCC---------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 45677776665321 24579999999999999999999999999999999999765 2 2 46789999998
Q ss_pred cCCc---c---c-ccceEEEEecCCC--CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000524 924 PKKQ---E---T-FARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLP 994 (1444)
Q Consensus 924 ~~~~---~---~-~~~~~gyv~q~~~--~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 994 (1444)
++-. + . +-+.+++++|++. +.|.+||.+-+.=......... ..++..+.+.++|+.+|+.+....+ +.
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~--~~ 149 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRL--KS 149 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHH--hh
Confidence 6432 2 1 2357899999975 5688999887765444322111 3445566789999999998753322 22
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEe
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMK 1073 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~v~ll~ 1073 (1444)
....|||||||||.||.||+.+|++|+.||||++||...+++|++.|+++.+ .|.|+|++|||.. -+.+.||||.||.
T Consensus 150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY 228 (316)
T COG0444 150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY 228 (316)
T ss_pred CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE
Confidence 3568999999999999999999999999999999999999999999999986 5999999999997 4889999999998
Q ss_pred cCcEEEEEcCC
Q 000524 1074 RGGQEIYVGPL 1084 (1444)
Q Consensus 1074 ~gg~~~y~G~~ 1084 (1444)
. |++|+.|+.
T Consensus 229 a-G~iVE~g~~ 238 (316)
T COG0444 229 A-GRIVEEGPV 238 (316)
T ss_pred C-cEEEEeCCH
Confidence 5 899999996
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=315.29 Aligned_cols=219 Identities=24% Similarity=0.319 Sum_probs=174.2
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCC--Cc-eEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--GG-YITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 922 (1444)
-+.++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 378899988763 2469999999999999999999999999999999999643 11 2479999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1444)
.++.. ...++.++|++|++.+++ .|++|++.+....+.. ...+..++.+.+.++.+++......... ..+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~ 147 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLH-ESAL 147 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHh-cCcc
Confidence 87632 234567999999988887 6999999886543321 1222223456778888887432111111 1246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|++. ++.+.+|++++|++ |+
T Consensus 148 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14255 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLT-GN 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 589999999986 57788999999985 79
Q ss_pred EEEEcCC
Q 000524 1078 EIYVGPL 1084 (1444)
Q Consensus 1078 ~~y~G~~ 1084 (1444)
++..|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14255 225 LIEFADT 231 (252)
T ss_pred EEEeCCH
Confidence 9998875
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=320.51 Aligned_cols=204 Identities=27% Similarity=0.384 Sum_probs=168.8
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCC--C---ccceEEEEcCCCC-CCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF--V---PERTAAYISQHDN-HIG 239 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~--~---~~~~~~yv~Q~d~-~~~ 239 (1444)
.+|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... . .++.++|++|++. .+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 5899999999999999999999999999999999999987 99999999987421 1 2457999999863 344
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000524 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1444)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1444)
.+||+||+.++....+. .+ .+....+..+++.+||++..++.++
T Consensus 93 ~~tv~e~i~~~~~~~~~-~~---------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~-- 136 (275)
T PRK13639 93 APTVEEDVAFGPLNLGL-SK---------------------------------EEVEKRVKEALKAVGMEGFENKPPH-- 136 (275)
T ss_pred cccHHHHHHHHHHHcCC-CH---------------------------------HHHHHHHHHHHHHCCCchhhcCChh--
Confidence 57999999875322110 00 0011235678899999877776554
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc
Q 000524 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1444)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1444)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++.+++|++++|+
T Consensus 137 ---~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~-~~til~vtH~~~~~~~~~d~i~~l~ 211 (275)
T PRK13639 137 ---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-E-GITIIISTHDVDLVPVYADKVYVMS 211 (275)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 6999999999999999999999999999999999999999999999864 3 4556667888888999999999999
Q ss_pred CCeEEEecChhhHH
Q 000524 400 DGQIVYQGPRELVL 413 (1444)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1444)
+|++++.|+.+++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (275)
T PRK13639 212 DGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999998874
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=350.14 Aligned_cols=219 Identities=26% Similarity=0.308 Sum_probs=182.5
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
-++++|+++.+. ++.+|+|+||++++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEEC
Confidence 378889888763 24699999999999999999999999999999999998653 489999999876
Q ss_pred Ccc----cccceEEEEecCCCCCCCCcHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000524 926 KQE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLR----LPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997 (1444)
Q Consensus 926 ~~~----~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr----~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1444)
... ..++.++|++|++.+++.+||+|++.+..... .....+.++.++.++++++.+||.+..++.+ .
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 432 12346899999998899999999998753211 0000122334456889999999988777764 5
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
.||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|.|||+++|++. ++.+.||++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999878999999999986 57788999999985 79
Q ss_pred EEEEcCCCc
Q 000524 1078 EIYVGPLGR 1086 (1444)
Q Consensus 1078 ~~y~G~~~~ 1086 (1444)
+++.|+..+
T Consensus 223 i~~~g~~~~ 231 (510)
T PRK09700 223 SVCSGMVSD 231 (510)
T ss_pred Eeeecchhh
Confidence 999998743
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=320.82 Aligned_cols=205 Identities=25% Similarity=0.335 Sum_probs=168.2
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCC--CC---ccceEEEEcCCCC-CC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE--FV---PERTAAYISQHDN-HI 238 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~--~~---~~~~~~yv~Q~d~-~~ 238 (1444)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. .. .++.++|++|++. .+
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 35899999999999999999999999999999999999987 9999999998742 11 1357999999875 34
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
...|+.||+.+..+..+... .+....++.+++.+||++..++.+
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVPE----------------------------------AEITRRVDEALTLVDAQHFRHQPI-- 134 (271)
T ss_pred ccccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhcCCc--
Confidence 55689999988643221100 001123566788999987766554
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+ ++|+.++|+..++.+++|++++|
T Consensus 135 ---~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tii~vtH~~~~~~~~~d~i~~l 209 (271)
T PRK13638 135 ---QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QG-NHVIISSHDIDLIYEISDAVYVL 209 (271)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999764 34 45566788888899999999999
Q ss_pred cCCeEEEecChhhHH
Q 000524 399 SDGQIVYQGPRELVL 413 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1444)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 210 RQGQILTHGAPGEVF 224 (271)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=317.50 Aligned_cols=213 Identities=23% Similarity=0.306 Sum_probs=169.2
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCeecEEEECCccCCCCC---ccceEEEEcCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEFV---PERTAAYISQHDNHIG 239 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~ 239 (1444)
.++|+|+|+.+++|++++|+||||||||||+++|+|.++|. ...+|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 35899999999999999999999999999999999998741 123899999999876432 2457999999998899
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000524 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1444)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1444)
.+||+||+.++.+..+.... . .+....++++++.+||.+..+... +.
T Consensus 96 ~~tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~ 142 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVKS--------K------------------------KELQERVRWALEKAQLWDEVKDRL-DA 142 (250)
T ss_pred CCcHHHHHHHHHHhccccCC--------H------------------------HHHHHHHHHHHHHcCCCcchhhhh-cC
Confidence 99999999986543210000 0 001123566788899864211111 23
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc
Q 000524 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1444)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1444)
.+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. .+ ++++.++|+..++.+.+|+|++|+
T Consensus 143 ~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~sH~~~~~~~~~d~i~~l~ 219 (250)
T PRK14247 143 PAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK--KD-MTIVLVTHFPQQAARISDYVAFLY 219 (250)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhcCEEEEEE
Confidence 445799999999999999999999999999999999999999999999874 24 455667788888899999999999
Q ss_pred CCeEEEecChhhHH
Q 000524 400 DGQIVYQGPRELVL 413 (1444)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1444)
+|++++.|+.+++.
T Consensus 220 ~G~i~~~g~~~~~~ 233 (250)
T PRK14247 220 KGQIVEWGPTREVF 233 (250)
T ss_pred CCeEEEECCHHHHH
Confidence 99999999988764
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=319.36 Aligned_cols=205 Identities=23% Similarity=0.330 Sum_probs=169.2
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCC----------------CccceE
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF----------------VPERTA 228 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~----------------~~~~~~ 228 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 45999999999999999999999999999999999999987 99999999877421 113579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhh-hcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhC
Q 000524 229 AYISQHDNHIGEMTVRETLAFSAR-CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (1444)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (1444)
+|++|++.+++.+||+||+.++.. ..... . .+....+.++++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS-K---------------------------------QEARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC-H---------------------------------HHHHHHHHHHHHHcC
Confidence 999999999999999999987532 11100 0 001223567889999
Q ss_pred Ccccc-cccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCch
Q 000524 308 LEVCA-DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP 386 (1444)
Q Consensus 308 L~~~~-dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~ 386 (1444)
|.+.. +. ..+.||||||||++||+||+.+|++++|||||+|||+.+...+.+.|++++. . +.+|+.++|+..
T Consensus 141 l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsH~~~ 213 (257)
T PRK10619 141 IDERAQGK-----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMG 213 (257)
T ss_pred CChhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH
Confidence 97643 43 3457999999999999999999999999999999999999999999998864 3 455555778888
Q ss_pred hHHhhcCeEEEEcCCeEEEecChhhHH
Q 000524 387 ETYDLFDDIILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 387 ~~~~~fD~vilL~~G~iv~~G~~~~~~ 413 (1444)
++.+++|+|++|++|++++.|+.+++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 888999999999999999999988764
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=320.74 Aligned_cols=210 Identities=24% Similarity=0.360 Sum_probs=170.9
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1444)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 35999999999999999999999999999999999999987 9999999988754322 35699999998888999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
||.||+.++..... .. .+ .. . ......++.+++.+||++..++.++
T Consensus 101 tv~e~l~~~~~~~~-~~--------------~~-~~-~-------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 146 (265)
T PRK10575 101 TVRELVAIGRYPWH-GA--------------LG-RF-G-------------AADREKVEEAISLVGLKPLAHRLVD---- 146 (265)
T ss_pred cHHHHHHhCccccc-cc--------------cc-CC-C-------------HHHHHHHHHHHHHcCCHHHhcCCcc----
Confidence 99999987532100 00 00 00 0 0011235678899999876666554
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|++++...+ ++|+.++|..+++.+.+|+|++|++|
T Consensus 147 -~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~-~tiii~sH~~~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 147 -SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG-LTVIAVLHDINMAARYCDYLVALRGG 224 (265)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999999865334 45555778888999999999999999
Q ss_pred eEEEecChhhHH
Q 000524 402 QIVYQGPRELVL 413 (1444)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1444)
++++.|+.+++.
T Consensus 225 ~i~~~~~~~~~~ 236 (265)
T PRK10575 225 EMIAQGTPAELM 236 (265)
T ss_pred eEEEecCHHHhc
Confidence 999999887653
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=357.90 Aligned_cols=206 Identities=21% Similarity=0.276 Sum_probs=166.7
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1444)
++|+|+|++++|||.++|+|+||||||||+++|+|.++|+ +|+|.+||+++++..+ ++.++||+|++.+|+. |
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-T 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-h
Confidence 4899999999999999999999999999999999999998 9999999999887654 5789999999988875 9
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
++|||.++.. . . .+...+.+ ...+ .++.++. |++..||.+|+.+ .
T Consensus 431 i~~NI~~~~~---~-~-d~~i~~a~---------------------~~~g------l~~~i~~--lp~Gldt~i~e~g-~ 475 (592)
T PRK10790 431 FLANVTLGRD---I-S-EEQVWQAL---------------------ETVQ------LAELARS--LPDGLYTPLGEQG-N 475 (592)
T ss_pred HHHHHHhCCC---C-C-HHHHHHHH---------------------HHcC------cHHHHHh--ccccccccccCCC-C
Confidence 9999998631 0 0 01111111 0000 1112222 5667899999854 4
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
.||||||||++|||||+++|++++||||||+||+.++..|.+.|+++. .++|+|+..|++ +....+|+|++|++|+
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tvIivtHr~--~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTLVVIAHRL--STIVEADTILVLHRGQ 551 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999998864 346666654443 5567799999999999
Q ss_pred EEEecChhhHHH
Q 000524 403 IVYQGPRELVLE 414 (1444)
Q Consensus 403 iv~~G~~~~~~~ 414 (1444)
++..|+++++++
T Consensus 552 i~~~G~~~~L~~ 563 (592)
T PRK10790 552 AVEQGTHQQLLA 563 (592)
T ss_pred EEEEcCHHHHHh
Confidence 999999999864
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=358.42 Aligned_cols=210 Identities=21% Similarity=0.337 Sum_probs=179.5
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..++++|++|.++. ++.+|+|+|++++|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEE
Confidence 46999999999851 13599999999999999999999999999999999998764 47999999998
Q ss_pred CCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000524 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 994 (1444)
Q Consensus 925 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 994 (1444)
+++ ..+++.++||+|++.+++. |++||+.++. +.+ ++.++++++.+|+.+.. |+.+|..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 654 3567889999999999875 9999998752 122 23478889998877644 5566653
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
..+||||||||++|||||+++|+||+||||||+||+.+++.|.+.|+++.+ ++|+|+++|+++ ....||+|++|++
T Consensus 474 -g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~ 549 (592)
T PRK10790 474 -GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHR 549 (592)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEEC
Confidence 467999999999999999999999999999999999999999999998854 699999999984 5778999999985
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|+++..|+.
T Consensus 550 -G~i~~~G~~ 558 (592)
T PRK10790 550 -GQAVEQGTH 558 (592)
T ss_pred -CEEEEEcCH
Confidence 899999985
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=319.91 Aligned_cols=207 Identities=20% Similarity=0.247 Sum_probs=169.2
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCC--CCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN--HIG 239 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~--~~~ 239 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999997 9999999988753221 246999999874 567
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCc-ccccccccC
Q 000524 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMVGD 318 (1444)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 318 (1444)
.+||.|++.+..+....... .+....++.+++.+||. +..++.+
T Consensus 103 ~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 147 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLEP---------------------------------EQREKQIIETLRQVGLLPDHASYYP-- 147 (267)
T ss_pred chhHHHHHHHHHHhccCCCH---------------------------------HHHHHHHHHHHHHcCCChHHHhcCc--
Confidence 88999999886543210000 00112356789999994 4555443
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++.. +++|+.++|+.+++..++|++++|
T Consensus 148 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 148 ---HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQ-GISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred ---hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHhcCEEEEE
Confidence 4799999999999999999999999999999999999999999999986533 445555788888999999999999
Q ss_pred cCCeEEEecChhhHH
Q 000524 399 SDGQIVYQGPRELVL 413 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1444)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999987764
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=311.96 Aligned_cols=200 Identities=26% Similarity=0.398 Sum_probs=160.6
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCccceEEEEcCCCCCC--CCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHI--GEMT 242 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lT 242 (1444)
.++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++. ..++.++|++|++.+. +.+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHH--HHHhheEEeccccccccCCCCc
Confidence 46999999999999999999999999999999999999987 999999998764 2346799999997653 3489
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
|+||+.++...... .+.. + . .+....++.+++.+||++..++.+ .
T Consensus 87 v~e~l~~~~~~~~~--~~~~--------------~--~------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 131 (213)
T cd03235 87 VRDVVLMGLYGHKG--LFRR--------------L--S------------KADKAKVDEALERVGLSELADRQI-----G 131 (213)
T ss_pred HHHHHHhccccccc--cccC--------------C--C------------HHHHHHHHHHHHHcCCHHHHhCCc-----c
Confidence 99999885431100 0000 0 0 001123567889999987666554 4
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ . +++|+.++|+.+++.+++|++++|++|
T Consensus 132 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-E-GMTILVVTHDLGLVLEYFDRVLLLNRT- 208 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEcCc-
Confidence 6999999999999999999999999999999999999999999999865 3 445666788888999999999999886
Q ss_pred EEEec
Q 000524 403 IVYQG 407 (1444)
Q Consensus 403 iv~~G 407 (1444)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=309.58 Aligned_cols=192 Identities=25% Similarity=0.347 Sum_probs=159.8
Q ss_pred CceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEEecCCCCCCCCcH
Q 000524 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTV 949 (1444)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv 949 (1444)
+.+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ..+...+.+.+||
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~tv 101 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELTG 101 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCcH
Confidence 45679999999999999999999999999999999999765 358999999976421 1112234567999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000524 950 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1444)
Q Consensus 950 ~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgL 1029 (1444)
+||+.+....+. ...+..++.++++++.++|.+..++.+ ..||||||||++|||+|+.+|++|+|||||+||
T Consensus 102 ~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 102 RENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999987654321 223344456788999999988777764 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1030 DARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1030 D~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
|+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999998777899999999986 57778999999985 7887765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=306.62 Aligned_cols=199 Identities=22% Similarity=0.289 Sum_probs=164.9
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
++++|+++.++ .+.+|+|+|+.+++||++||+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 45677777653 24699999999999999999999999999999999998653 4799999998754
Q ss_pred c--ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000524 927 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 1004 (1444)
Q Consensus 927 ~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1004 (1444)
. ..+++.++|++|++.+++.+|+.|++.+....+. . ..++.++++++.+||.+..++. +..||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHH
Confidence 3 2345678999999988899999999987654321 1 1234578999999998777765 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000524 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1072 (1444)
Q Consensus 1005 kRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll 1072 (1444)
||++||++|+++|++|+|||||+|||+.+...+++.|+++.++|+|||+++|++. ++-+.-+|++.+
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999999999999999999998777899999999986 344443565554
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=321.40 Aligned_cols=207 Identities=25% Similarity=0.340 Sum_probs=168.4
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC---ccceEEEEcCCCC-CCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---PERTAAYISQHDN-HIGEM 241 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (1444)
++|+|+|+.|++|++++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++. .++..
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 4899999999999999999999999999999999999886112399999999886432 2357999999974 67789
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
||+||+.|..+..+.. . .+...+++.+++.+||++..++.+
T Consensus 101 tv~enl~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~L~~~~~~~~----- 141 (282)
T PRK13640 101 TVGDDVAFGLENRAVP-R---------------------------------PEMIKIVRDVLADVGMLDYIDSEP----- 141 (282)
T ss_pred CHHHHHHhhHHhCCCC-H---------------------------------HHHHHHHHHHHHHCCChhHhcCCc-----
Confidence 9999998864322110 0 011224567889999987666544
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.| |+.++|..+++ ..+|++++|++|
T Consensus 142 ~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~t-vli~tH~~~~~-~~~d~i~~l~~G 219 (282)
T PRK13640 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLT-VISITHDIDEA-NMADQVLVLDDG 219 (282)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCHHHH-HhCCEEEEEECC
Confidence 5799999999999999999999999999999999999999999999886533445 44466766676 579999999999
Q ss_pred eEEEecChhhHH
Q 000524 402 QIVYQGPRELVL 413 (1444)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1444)
++++.|+.+++.
T Consensus 220 ~i~~~g~~~~~~ 231 (282)
T PRK13640 220 KLLAQGSPVEIF 231 (282)
T ss_pred EEEEeCCHHHHh
Confidence 999999998774
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=319.31 Aligned_cols=218 Identities=22% Similarity=0.379 Sum_probs=174.9
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.++|+++.++ +++.+|+|+|++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEh
Confidence 478999988773 124699999999999999999999999999999999998653 589999999876
Q ss_pred CcccccceEEEEecCCCCC--CCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 926 KQETFARISGYCEQNDIHS--PFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 926 ~~~~~~~~~gyv~q~~~~~--~~lTv~e~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
.....++.++|++|++.+. ...+++|++.+....+.. ........++.++++++.++|.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4332234689999997653 234788887653211000 01111223445788999999988777764 469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEc
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G 1082 (1444)
||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+.+|+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999986 578899999777 4 8999999
Q ss_pred CCC
Q 000524 1083 PLG 1085 (1444)
Q Consensus 1083 ~~~ 1085 (1444)
+..
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 864
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=316.88 Aligned_cols=203 Identities=24% Similarity=0.314 Sum_probs=167.4
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCC------C---CccceEEEEcCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE------F---VPERTAAYISQHDN 236 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~------~---~~~~~~~yv~Q~d~ 236 (1444)
.+|+|+|+.+++||+++|+|||||||||||++|+|..+|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 5999999999999999999999999999999999999987 9999999987631 1 11357999999999
Q ss_pred CCCCCCHHHHHHHhh-hhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccc
Q 000524 237 HIGEMTVRETLAFSA-RCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTM 315 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1444)
+++.+||+||+.+.. ...+... .+....++.+++.+||++..+..
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~ 138 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLSK----------------------------------DQALARAEKLLERLRLKPYADRF 138 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCC
Confidence 999999999997532 1111000 00112356788999998766655
Q ss_pred ccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeE
Q 000524 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1444)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1444)
+ +.|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.. .+ ++++.++|+..++.+++|++
T Consensus 139 ~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~sh~~~~~~~~~d~i 211 (242)
T PRK11124 139 P-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TG-ITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhcCEE
Confidence 4 47999999999999999999999999999999999999999999998753 34 45555778888888999999
Q ss_pred EEEcCCeEEEecChhhH
Q 000524 396 ILLSDGQIVYQGPRELV 412 (1444)
Q Consensus 396 ilL~~G~iv~~G~~~~~ 412 (1444)
++|++|+++++|+.+++
T Consensus 212 ~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 212 VYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999987754
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=306.42 Aligned_cols=195 Identities=26% Similarity=0.320 Sum_probs=165.7
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
+++|+++.++ .+.+|+|+|++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccc
Confidence 4667776653 24699999999999999999999999999999999998653 47999999987532
Q ss_pred --ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000524 928 --ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 1005 (1444)
Q Consensus 928 --~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1005 (1444)
..+++.++|++|++.+++.+|++|++.+.... . .++.++++++.+++.+..++. +..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHH
Confidence 23456789999998888899999999874311 1 134578899999998877665 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000524 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1072 (1444)
Q Consensus 1006 Rl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll 1072 (1444)
|++||++|+.+|++|+|||||+|||+.+...+++.|+++.++|+|+|+++|++. ++...+|+++++
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999999999999999999999999999998777999999999986 677889999877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=356.95 Aligned_cols=213 Identities=22% Similarity=0.321 Sum_probs=179.5
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..++++|++|+++. +.+.+|+|+|++|+|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEE
Confidence 46999999999852 124699999999999999999999999999999999998764 47999999998
Q ss_pred CCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000524 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 994 (1444)
Q Consensus 925 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1444)
.++ ..+++.++||+|++.+++ -|++||+.++. +.+.+ ++.++++++.+++.+. .|+.+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 654 346788999999998886 69999997641 21222 2347778888776543 46777764
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
...||||||||++|||+|+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|+++ ..+.||+|++|++
T Consensus 478 -g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~ 553 (582)
T PRK11176 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED 553 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 36799999999999999999999999999999999999999999999874 4799999999984 6788999999985
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|+++..|+.
T Consensus 554 -g~i~e~g~~ 562 (582)
T PRK11176 554 -GEIVERGTH 562 (582)
T ss_pred -CEEEEeCCH
Confidence 899999984
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=320.11 Aligned_cols=209 Identities=23% Similarity=0.372 Sum_probs=171.3
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1444)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++..++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 45999999999999999999999999999999999999987 9999999998765332 35699999999888899
Q ss_pred CHHHHHHHhhhhc-CCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 242 TVRETLAFSARCQ-GVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 242 TV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
||+||+.++..-. ..... . . ......++.+++.+||++..++.+
T Consensus 97 tv~~~~~~~~~~~~~~~~~----------------~--~-------------~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (265)
T PRK10253 97 TVQELVARGRYPHQPLFTR----------------W--R-------------KEDEEAVTKAMQATGITHLADQSV---- 141 (265)
T ss_pred cHHHHHHhCcccccccccC----------------C--C-------------HHHHHHHHHHHHHcCCHHHhcCCc----
Confidence 9999998752100 00000 0 0 001123567889999987666544
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
+.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.+++|+|++|++
T Consensus 142 -~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~ 219 (265)
T PRK10253 142 -DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREK-GYTLAAVLHDLNQACRYASHLIALRE 219 (265)
T ss_pred -ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5799999999999999999999999999999999999999999999986533 44555577888899999999999999
Q ss_pred CeEEEecChhhHH
Q 000524 401 GQIVYQGPRELVL 413 (1444)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1444)
|++++.|+.+++.
T Consensus 220 G~i~~~g~~~~~~ 232 (265)
T PRK10253 220 GKIVAQGAPKEIV 232 (265)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=320.08 Aligned_cols=216 Identities=23% Similarity=0.317 Sum_probs=171.6
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC--------ccceEEEEcCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--------PERTAAYISQHDN 236 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--------~~~~~~yv~Q~d~ 236 (1444)
+++|+|+|+.+++||+++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 45999999999999999999999999999999999999875223699999998875321 1356899999998
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccc
Q 000524 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1444)
+++.+||+||+.+...... . ..... ... . ..+.+..++.+++.+||++..|..+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~--~-------~~~~~--~~~-~--------------~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGST--P-------FWRTC--FSW-F--------------TREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhcccc--c-------chhhh--ccc-c--------------cHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 9999999999987642100 0 00000 000 0 0011234677899999987776654
Q ss_pred cCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEE
Q 000524 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1444)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1444)
..|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++++.. +++|+.++|+.+++.+.+|+|+
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tvii~tH~~~~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND-GITVVVTLHQVDYALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 4699999999999999999999999999999999999999999999987533 4555657788888999999999
Q ss_pred EEcCCeEEEecChhhH
Q 000524 397 LLSDGQIVYQGPRELV 412 (1444)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (1444)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=317.49 Aligned_cols=205 Identities=21% Similarity=0.288 Sum_probs=168.5
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC---ccceEEEEcCCCC-CCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---PERTAAYISQHDN-HIGE 240 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (1444)
..+|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35899999999999999999999999999999999999987 999999999876432 2467999999974 6778
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
.||.||+.++.+..+.. + .+....++.+++.+||.+..++.+
T Consensus 97 ~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 138 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP-R---------------------------------EEMIKRVDEALLAVNMLDFKTREP---- 138 (277)
T ss_pred CCHHHHHHhhHHHcCCC-H---------------------------------HHHHHHHHHHHHHCCCHhHhhCCc----
Confidence 89999998764321110 0 001123567888999987666544
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++...+.| |+.++|..+++. .+|+|++|++
T Consensus 139 -~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~t-iil~sH~~~~~~-~~d~i~~l~~ 215 (277)
T PRK13642 139 -ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLT-VLSITHDLDEAA-SSDRILVMKA 215 (277)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHH-hCCEEEEEEC
Confidence 4799999999999999999999999999999999999999999999886533444 555777777775 6999999999
Q ss_pred CeEEEecChhhHH
Q 000524 401 GQIVYQGPRELVL 413 (1444)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1444)
|+++..|+.+++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=319.58 Aligned_cols=210 Identities=20% Similarity=0.293 Sum_probs=174.1
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.++|+++.++. +...+|+|||+.|++||+++|+|+||||||||+++|+|... .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 3789999888742 12358999999999999999999999999999999999864 369999999876
Q ss_pred Cc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccC------CCC
Q 000524 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL------PGV 996 (1444)
Q Consensus 926 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~------~~~ 996 (1444)
.. ...++.++|++|++.+++ .|++||+.... ... ++.++++++.+||.+..+..++. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 234667999999999887 59999995321 111 23478889999998766665431 234
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCc
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg 1076 (1444)
..||||||||++|||||+.+|+||+|||||+|||+.+...+++.|++.. .++|||+++|++. .+ ..+|++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-C
Confidence 6799999999999999999999999999999999999999999999874 4899999999984 34 45999999985 7
Q ss_pred EEEEEcCC
Q 000524 1077 QEIYVGPL 1084 (1444)
Q Consensus 1077 ~~~y~G~~ 1084 (1444)
+++++|++
T Consensus 213 ~i~~~g~~ 220 (275)
T cd03289 213 KVRQYDSI 220 (275)
T ss_pred eEeecCCH
Confidence 99999986
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=312.83 Aligned_cols=201 Identities=23% Similarity=0.382 Sum_probs=168.1
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 000524 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1444)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1444)
|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999987 9999999998765432 357999999999999999999998
Q ss_pred HhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccccchhh
Q 000524 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1444)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1444)
+..... .... . .....++.+++.+||++..++.+. .|||||
T Consensus 94 ~~~~~~-~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 134 (232)
T PRK10771 94 LGLNPG-LKLN-----A----------------------------AQREKLHAIARQMGIEDLLARLPG-----QLSGGQ 134 (232)
T ss_pred cccccc-cCCC-----H----------------------------HHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHH
Confidence 753210 0000 0 011235678899999877776554 699999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeEEEecC
Q 000524 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1444)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~ 408 (1444)
||||+||++++.+|++++|||||+|||..++..+.+.|+++.+..+. +|+.++|+..++.+.+|+|++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~-tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQL-TLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988653344 45557788888899999999999999999999
Q ss_pred hhhHH
Q 000524 409 RELVL 413 (1444)
Q Consensus 409 ~~~~~ 413 (1444)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 88764
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=321.31 Aligned_cols=209 Identities=26% Similarity=0.412 Sum_probs=172.6
Q ss_pred cceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCC---CccceEEEEcCCCCCCCC
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF---VPERTAAYISQHDNHIGE 240 (1444)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~---~~~~~~~yv~Q~d~~~~~ 240 (1444)
.+++|+||||++.||+.+|++||||+||||+|++|....+.+ +|.|+++|+++... ..|+.+|.||||..+|.
T Consensus 550 ~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN- 625 (790)
T KOG0056|consen 550 GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN- 625 (790)
T ss_pred CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcceeec-
Confidence 357999999999999999999999999999999999999887 99999999998654 34678999999887776
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1444)
.|+..||.|+.. + ..|.+.+..|.+. + + --++++.++.++|+||+++
T Consensus 626 dTI~yNIryak~----~--------------------AsneevyaAAkAA--~----I---HdrIl~fPegY~t~VGERG 672 (790)
T KOG0056|consen 626 DTILYNIRYAKP----S--------------------ASNEEVYAAAKAA--Q----I---HDRILQFPEGYNTRVGERG 672 (790)
T ss_pred ceeeeheeecCC----C--------------------CChHHHHHHHHHh--h----H---HHHHhcCchhhhhhhhhcc
Confidence 599999988631 1 1121222221111 1 1 1257889999999999998
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1444)
.+ |||||||||+|||+++..|.+++|||.||+||..+.+.|..+|.+++. ++|+|+..|. -.+.-.+|.|+++++
T Consensus 673 Lk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHR--LSTivnAD~ILvi~~ 747 (790)
T KOG0056|consen 673 LK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHR--LSTIVNADLILVISN 747 (790)
T ss_pred cc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeee--ehheecccEEEEEeC
Confidence 86 999999999999999999999999999999999999999999999884 5677765543 335567899999999
Q ss_pred CeEEEecChhhHHH
Q 000524 401 GQIVYQGPRELVLE 414 (1444)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1444)
|+|++.|.++|++.
T Consensus 748 G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 748 GRIVERGRHEELLK 761 (790)
T ss_pred CeEeecCcHHHHHh
Confidence 99999999999875
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=315.37 Aligned_cols=213 Identities=25% Similarity=0.319 Sum_probs=168.5
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCeecEEEECCccCCCCCc----cceEEEEcCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL--DSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHI 238 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l--~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 238 (1444)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|+++..... +..++|++|++.++
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 45999999999999999999999999999999999995 566 9999999998765432 23489999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcc-ccccccc
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV-CADTMVG 317 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg 317 (1444)
+.+|++|++.+......... .+. ..+ ..+....++.+++.+||+. ..++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~----------~~~------~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSAR----------GEE------PLD-----------LLDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhccc----------ccc------ccc-----------HHHHHHHHHHHHHHcCCchhhcccccc
Confidence 99999999988643211000 000 000 0011234677899999973 4554443
Q ss_pred CccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhh-cCeEE
Q 000524 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-FDDII 396 (1444)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~-fD~vi 396 (1444)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+ ++|+.++|+.+++... +|+++
T Consensus 143 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~vsH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 143 ----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PD-RSFLIITHYQRLLNYIKPDYVH 216 (243)
T ss_pred ----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CC-cEEEEEEecHHHHHhhcCCeEE
Confidence 14999999999999999999999999999999999999999999998854 34 4555577778888887 89999
Q ss_pred EEcCCeEEEecChhhHH
Q 000524 397 LLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1444)
+|++|++++.|+.+++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999987553
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=324.03 Aligned_cols=206 Identities=19% Similarity=0.296 Sum_probs=166.3
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCC----C----CccceEEEEcCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE----F----VPERTAAYISQHDN 236 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~----~----~~~~~~~yv~Q~d~ 236 (1444)
..+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 24 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~ 100 (289)
T PRK13645 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPE 100 (289)
T ss_pred cceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcc
Confidence 35899999999999999999999999999999999999987 9999999988642 1 12457999999863
Q ss_pred -CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCc-ccccc
Q 000524 237 -HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADT 314 (1444)
Q Consensus 237 -~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (1444)
.+...||+||+.|+....+... .+....++.+++.+||+ +..++
T Consensus 101 ~~~~~~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~ 146 (289)
T PRK13645 101 YQLFQETIEKDIAFGPVNLGENK----------------------------------QEAYKKVPELLKLVQLPEDYVKR 146 (289)
T ss_pred hhhhhhHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhHhcC
Confidence 2334699999988643221100 00112346678889994 45554
Q ss_pred cccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCe
Q 000524 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1444)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1444)
.+ +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|..+++.+++|+
T Consensus 147 ~~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiiiisH~~~~~~~~~d~ 220 (289)
T PRK13645 147 SP-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY-KKRIIMVTHNMDQVLRIADE 220 (289)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCE
Confidence 43 4799999999999999999999999999999999999999999999886533 44555578888889999999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 000524 395 IILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1444)
|++|++|++++.|+.+++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 221 VIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999988764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=346.74 Aligned_cols=220 Identities=23% Similarity=0.340 Sum_probs=181.2
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
++++|+++.++ ++.+|+|||+++++||++||+||||||||||+++|+|...+++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 56778887763 24699999999999999999999999999999999997653224899999998764
Q ss_pred ccc----ccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCcCC
Q 000524 927 QET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-EVDSETRKMFIEEVMELVELKPLI-QSLVGLPGVSGLS 1000 (1444)
Q Consensus 927 ~~~----~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~lS 1000 (1444)
... .++.+||++|++.+++.+||.|++.+....+... ....+..++.++++++.++|.+.. +.. +..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 321 2356899999998889999999998764332111 122333445688999999998654 343 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEE
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1080 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y 1080 (1444)
|||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+.||++++|++ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999888999999999986 57788999999986 78999
Q ss_pred EcCCCc
Q 000524 1081 VGPLGR 1086 (1444)
Q Consensus 1081 ~G~~~~ 1086 (1444)
.|+...
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 988753
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=316.55 Aligned_cols=210 Identities=22% Similarity=0.318 Sum_probs=164.7
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCeecEEEECCccCCCC--C---ccceEEEEcCCCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEF--V---PERTAAYISQHDNHI 238 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~--~---~~~~~~yv~Q~d~~~ 238 (1444)
.+|+|+|+.+++|++++|+|||||||||||++|+|..+ |....+|+|.++|+++... . .++.++|++|++.++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 58999999999999999999999999999999999864 1001389999999887532 1 145799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+ .||+||+.++....+.... ......++.+++.+||.+...+.. +
T Consensus 100 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14242 100 P-KSIFENVAYGLRVNGVKDK---------------------------------AYLAERVERSLRHAALWDEVKDRL-H 144 (253)
T ss_pred c-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-h
Confidence 7 5999999987543221000 001123456677888754221222 2
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. .+ .+|+.++|+..++.+++|+|++|
T Consensus 145 ~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tvii~tH~~~~~~~~~d~v~~l 221 (253)
T PRK14242 145 ESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK--AR-YTIIIVTHNMQQAARVSDVTAFF 221 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cC-CeEEEEEecHHHHHHhCCEEEEE
Confidence 3456799999999999999999999999999999999999999999999874 24 45555778888899999999999
Q ss_pred cCCeEEEecChhhHH
Q 000524 399 SDGQIVYQGPRELVL 413 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1444)
++|++++.|+.+++.
T Consensus 222 ~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 222 YMGKLIEVGPTEQIF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987663
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=312.65 Aligned_cols=206 Identities=27% Similarity=0.408 Sum_probs=171.0
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1444)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 35999999999999999999999999999999999999987 9999999998765433 3579999999988989999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1444)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1444)
+||+.+..+..+... ......++++++.++|....++.+ +.
T Consensus 90 ~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (237)
T TIGR00968 90 RDNIAFGLEIRKHPK----------------------------------AKIKARVEELLELVQLEGLGDRYP-----NQ 130 (237)
T ss_pred HHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 999988654321100 000123466788899976666544 46
Q ss_pred cchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000524 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1444)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1444)
||||||||++||++|+.+|++++|||||+|||..+...+.+.|++++...++|+|+ ++|...++.+++|+|++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli-~sH~~~~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKI 209 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHhhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999876532445444 66777888999999999999999
Q ss_pred EEecChhhHH
Q 000524 404 VYQGPRELVL 413 (1444)
Q Consensus 404 v~~G~~~~~~ 413 (1444)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (237)
T TIGR00968 210 EQIGSPDEVY 219 (237)
T ss_pred EEecCHHHHH
Confidence 9999988764
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=354.68 Aligned_cols=212 Identities=28% Similarity=0.425 Sum_probs=179.8
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..++|+|+++.++. +++.+|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 46999999999852 123599999999999999999999999999999999998653 48999999998
Q ss_pred CCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc------cccccCCC
Q 000524 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI------QSLVGLPG 995 (1444)
Q Consensus 925 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~------~~~vg~~~ 995 (1444)
+.+ ..+++.++||+|++.+++ .|++||+.++. + +. .++.++++++.+++.+.. ||.+|..
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~- 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEG- 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCC-
Confidence 654 346778999999998876 59999997752 1 11 233478899999987653 5666654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000524 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075 (1444)
Q Consensus 996 ~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~g 1075 (1444)
...||||||||++|||+|+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|+++ ....+|++++|++
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~- 548 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDN- 548 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeC-
Confidence 46799999999999999999999999999999999999999999999985 5899999999986 4567999999986
Q ss_pred cEEEEEcCC
Q 000524 1076 GQEIYVGPL 1084 (1444)
Q Consensus 1076 g~~~y~G~~ 1084 (1444)
|+++..|+.
T Consensus 549 G~i~~~g~~ 557 (574)
T PRK11160 549 GQIIEQGTH 557 (574)
T ss_pred CeEEEeCCH
Confidence 899999874
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=358.32 Aligned_cols=209 Identities=22% Similarity=0.381 Sum_probs=167.2
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1444)
+++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 45999999999999999999999999999999999999998 9999999999887654 478999999987776 6
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
|++|||.++..-. .+.++..+++...+ .++.++ .|++..||.+|+.+
T Consensus 432 Ti~~Ni~~~~~~~------------------------~~~~~i~~al~~~~------l~~~i~--~lp~Gldt~ig~~g- 478 (582)
T PRK11176 432 TIANNIAYARTEQ------------------------YSREQIEEAARMAY------AMDFIN--KMDNGLDTVIGENG- 478 (582)
T ss_pred hHHHHHhcCCCCC------------------------CCHHHHHHHHHHhC------cHHHHH--hcccccCceeCCCC-
Confidence 9999998753100 01111111111100 112222 26777899999865
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
+.||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. .++|+|+ ++|.. +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~-VtHr~-~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLV-IAHRL-STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEE-Eecch-HHHHhCCEEEEEECC
Confidence 5799999999999999999999999999999999999999999998863 3456555 45544 567789999999999
Q ss_pred eEEEecChhhHHH
Q 000524 402 QIVYQGPRELVLE 414 (1444)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1444)
+++++|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999998864
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=313.52 Aligned_cols=220 Identities=24% Similarity=0.296 Sum_probs=175.4
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.++|+++.++ ++.+|+|||+++++||++||+|+||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 378899987763 2359999999999999999999999999999999999621124589999999876
Q ss_pred Ccc---cccc-eEEEEecCCCCCCCCcHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000524 926 KQE---TFAR-ISGYCEQNDIHSPFVTVYESLLYSAWLRLP----PEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGV 996 (1444)
Q Consensus 926 ~~~---~~~~-~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~----~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 996 (1444)
... ..++ .++|++|++.+++.+|+.|++.+....... .+....+..+.+.++++.+++. ...+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 1222 478999999999999999998765432110 1112222335678899999997 34554431
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-cceEEEEecC
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDA-FDELFLMKRG 1075 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~-fD~v~ll~~g 1075 (1444)
..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+... +|++++|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeC-
Confidence 259999999999999999999999999999999999999999999999877999999999986 35454 899999985
Q ss_pred cEEEEEcCC
Q 000524 1076 GQEIYVGPL 1084 (1444)
Q Consensus 1076 g~~~y~G~~ 1084 (1444)
|++++.|+.
T Consensus 228 G~i~~~~~~ 236 (252)
T CHL00131 228 GKIIKTGDA 236 (252)
T ss_pred CEEEEecCh
Confidence 899999976
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=317.00 Aligned_cols=224 Identities=25% Similarity=0.328 Sum_probs=178.8
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.+.... ..+. ..++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~---~~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSGK-HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---cccc-cCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 67888887764100 0000 013569999999999999999999999999999999999765 35899999998754
Q ss_pred cc------cccceEEEEecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000524 927 QE------TFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVS 997 (1444)
Q Consensus 927 ~~------~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 997 (1444)
.. ..++.++|++|+. .+.+..|+.|++.+..... ...........++++++.+++. ...++. ..
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 31 2356799999997 3567789999987643211 1123344455689999999996 455554 45
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCc
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg 1076 (1444)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++ |.|||+++|++. ++.+.+|++++|++ |
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-G 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998765 899999999986 57788999999985 7
Q ss_pred EEEEEcCCC
Q 000524 1077 QEIYVGPLG 1085 (1444)
Q Consensus 1077 ~~~y~G~~~ 1085 (1444)
++++.|+..
T Consensus 229 ~i~~~g~~~ 237 (268)
T PRK10419 229 QIVETQPVG 237 (268)
T ss_pred EEeeeCChh
Confidence 999999864
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=317.72 Aligned_cols=219 Identities=21% Similarity=0.224 Sum_probs=174.0
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--G-GYITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 922 (1444)
-+.++|+++.++ .+.+|+|+|++|++||++||+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 488999988774 1358999999999999999999999999999999999753 1 13589999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1444)
.+... ..+++.++|++|++.+++ .|++||+.+....+. ..+.+..+..+.++++.+++......... ..+.
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~-~~~~ 166 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLH-DNAY 166 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHh-cCcc
Confidence 87632 234567999999988877 599999988654321 11222234456777877765321111111 1246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 167 ~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~-G~ 243 (271)
T PRK14238 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLN-GY 243 (271)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999865 799999999986 57788999999986 79
Q ss_pred EEEEcCC
Q 000524 1078 EIYVGPL 1084 (1444)
Q Consensus 1078 ~~y~G~~ 1084 (1444)
+++.|+.
T Consensus 244 i~~~g~~ 250 (271)
T PRK14238 244 VNEYDDT 250 (271)
T ss_pred EEEeCCH
Confidence 9999875
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=316.80 Aligned_cols=219 Identities=18% Similarity=0.231 Sum_probs=175.1
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc---eEEEEEEEc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITIS 921 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~ 921 (1444)
.-+.++|+++.+. ++.+|+|+|+.+++||+++|+|+||||||||+++|+|..... +.+|+|.++
T Consensus 19 ~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (274)
T PRK14265 19 SVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85 (274)
T ss_pred ceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEEC
Confidence 3588999988763 246999999999999999999999999999999999975321 247999999
Q ss_pred CccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000524 922 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 996 (1444)
Q Consensus 922 g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1444)
|.++.. ..+++.++|++|+..+++. ||.|++.+....+. ... ..++.++++++.+++......... ..+
T Consensus 86 g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~-~~~ 159 (274)
T PRK14265 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKG-NLDELVEDSLRRAAIWEEVKDKLK-EKG 159 (274)
T ss_pred CEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---chH-HHHHHHHHHHHHcccchhhHHHhc-CCc
Confidence 987532 2345678999999887764 99999987643321 111 223446778888887432111111 124
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe---
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK--- 1073 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~--- 1073 (1444)
..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 160 ~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~ 237 (274)
T PRK14265 160 TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEI 237 (274)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 67999999999999999999999999999999999999999999999865 799999999996 6888999999997
Q ss_pred -----cCcEEEEEcCC
Q 000524 1074 -----RGGQEIYVGPL 1084 (1444)
Q Consensus 1074 -----~gg~~~y~G~~ 1084 (1444)
+.|++++.|+.
T Consensus 238 ~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 238 DEYGKRRGKLVEFSPT 253 (274)
T ss_pred ccccccCceEEEeCCH
Confidence 25899999986
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=316.50 Aligned_cols=212 Identities=21% Similarity=0.315 Sum_probs=167.5
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCeecEEEECCccCC--CCC---ccceEEEEcCCCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMG--EFV---PERTAAYISQHDNHI 238 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~--~~~---~~~~~~yv~Q~d~~~ 238 (1444)
++|+|+|+.+++||+++|+||||||||||+++|+|.++|+ ...+|+|.++|+++. +.. .++.++|++|++.++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 5899999999999999999999999999999999998762 123899999999875 221 235799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+.+||.||+.++....+..... .+....++.+++.+||........ +
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKSK--------------------------------KELDERVEWALKKAALWDEVKDRL-N 144 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCCH--------------------------------HHHHHHHHHHHHHcCCccchhhhh-c
Confidence 9999999998865422110000 001123456778888743111111 2
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
...+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ + .+|+.++|..+++.+++|+|++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 145 DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSDYVAFL 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998753 3 45555778888899999999999
Q ss_pred cCCeEEEecChhhHH
Q 000524 399 SDGQIVYQGPRELVL 413 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1444)
++|++++.|+.+++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 222 YLGKLIEVGPTRKVF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=346.15 Aligned_cols=211 Identities=21% Similarity=0.311 Sum_probs=180.6
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.++|+++.++ ++.+|+|+|+++++|+++||+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 378899988774 24699999999999999999999999999999999998653 489999999876
Q ss_pred Ccc---c-ccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000524 926 KQE---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 1001 (1444)
Q Consensus 926 ~~~---~-~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1001 (1444)
... . .++.+||++|++.+++.+||+|++.|... . ....++.++++++.++|.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP--K-----RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc--c-----chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 431 1 22458999999999999999999987531 1 1223456889999999988777664 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEE
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1081 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~ 1081 (1444)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999888999999999986 57788999999986 799999
Q ss_pred cCCC
Q 000524 1082 GPLG 1085 (1444)
Q Consensus 1082 G~~~ 1085 (1444)
|+..
T Consensus 222 g~~~ 225 (510)
T PRK15439 222 GKTA 225 (510)
T ss_pred cChH
Confidence 9864
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=364.61 Aligned_cols=206 Identities=23% Similarity=0.320 Sum_probs=165.4
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1444)
+++|+|+|++|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|. .
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-G 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-c
Confidence 35899999999999999999999999999999999999998 9999999999887654 578999999987775 6
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
|++|||.++.. +.+.++..+++...+ .++.++ .++...||.+|+.+
T Consensus 568 Ti~eNi~l~~~-------------------------~~~~~~i~~al~~~~------l~~~i~--~lp~gl~t~i~e~G- 613 (710)
T TIGR03796 568 TVRDNLTLWDP-------------------------TIPDADLVRACKDAA------IHDVIT--SRPGGYDAELAEGG- 613 (710)
T ss_pred cHHHHhhCCCC-------------------------CCCHHHHHHHHHHhC------CHHHHH--hCcCcccceeccCC-
Confidence 99999987521 011111111111100 111222 36667899999765
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
.+||||||||++||||++++|++++||||||+||+.+...|.+.|++ .++|+|+ ++|.. ++...+|+|++|++|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~Ii-itHrl-~~i~~~D~Iivl~~G 687 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCII-VAHRL-STIRDCDEIIVLERG 687 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEE-EecCH-HHHHhCCEEEEEeCC
Confidence 57999999999999999999999999999999999999999999975 3456666 55544 455679999999999
Q ss_pred eEEEecChhhHHH
Q 000524 402 QIVYQGPRELVLE 414 (1444)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1444)
+++++|+++++++
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=317.68 Aligned_cols=213 Identities=22% Similarity=0.279 Sum_probs=174.3
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCC---ceEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 922 (1444)
.+.++|+++.+. ++.+|+|+||.|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 488999988763 24699999999999999999999999999999999997542 13589999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 993 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1444)
.++.. ...++.++|++|+..+++. ||.|++.+....+. ... ..++.++++++.++|.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87532 2345679999999887775 99999987654432 112 23446889999999853 23332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEE-EE
Q 000524 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELF-LM 1072 (1444)
Q Consensus 994 ~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~-ll 1072 (1444)
+..||||||||++||++|+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|+++ +|
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 467999999999999999999999999999999999999999999999976 489999999986 5778899975 56
Q ss_pred ecCcEEEEEcCC
Q 000524 1073 KRGGQEIYVGPL 1084 (1444)
Q Consensus 1073 ~~gg~~~y~G~~ 1084 (1444)
++ |+++..|+.
T Consensus 254 ~~-G~i~~~g~~ 264 (285)
T PRK14254 254 TG-GELVEFDDT 264 (285)
T ss_pred eC-CEEEEeCCH
Confidence 74 899998874
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=314.85 Aligned_cols=210 Identities=18% Similarity=0.249 Sum_probs=164.8
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCeecEEEECCccCCCC--C---ccceEEEEcCCCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEF--V---PERTAAYISQHDNHI 238 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~--~---~~~~~~yv~Q~d~~~ 238 (1444)
++|+|+|+.|++|++++|+||||||||||+++|+|.++ |....+|+|.++|+++... . .++.++|++|++.++
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 58999999999999999999999999999999999986 2112389999999887421 1 246799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+ .||+||+.+..+....... .+....++.+++.+||........ +
T Consensus 107 ~-~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 151 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEKLSR---------------------------------AEMDERVEWALTKAALWNEVKDKL-H 151 (260)
T ss_pred c-CcHHHHHhhhHhhcCCCCH---------------------------------HHHHHHHHHHHHHcCCChhhHHHH-h
Confidence 7 8999999886532210000 001123566788888742111111 2
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
.....||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++. .+ ++|+.++|+..++.+++|++++|
T Consensus 152 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~-~tiii~sH~~~~~~~~~d~i~~l 228 (260)
T PRK10744 152 QSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK--QD-YTVVIVTHNMQQAARCSDYTAFM 228 (260)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHHhCCEEEEE
Confidence 3345799999999999999999999999999999999999999999999874 24 45566778888888999999999
Q ss_pred cCCeEEEecChhhHH
Q 000524 399 SDGQIVYQGPRELVL 413 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1444)
++|+++..|+.+++.
T Consensus 229 ~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 229 YLGELIEFGNTDTIF 243 (260)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=316.80 Aligned_cols=211 Identities=27% Similarity=0.420 Sum_probs=162.6
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
++++|+++.++. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehH
Confidence 356777776531 123599999999999999999999999999999999998653 4799999998753
Q ss_pred c---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-c-----CCCCC
Q 000524 927 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV-G-----LPGVS 997 (1444)
Q Consensus 927 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v-g-----~~~~~ 997 (1444)
. ..+++.++|++|++.+++ .||.||+.+... ..... .+.+.++..++.+..+.+. | ...+.
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~----~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 137 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSME----RVIEAAKLAGAHDFISELPEGYDTIVGEQGA 137 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHH----HHHHHHHHcCcHHHHHhCcccccchhhcCCC
Confidence 2 234567999999987764 699999976421 11111 1223333334333222110 0 11246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|++++ +|+|||+++|++. ++ +.+|++++|++ |+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~ 213 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIVMEK-GR 213 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEEEEC-CE
Confidence 899999999999999999999999999999999999999999999986 4899999999986 35 56999999985 79
Q ss_pred EEEEcCC
Q 000524 1078 EIYVGPL 1084 (1444)
Q Consensus 1078 ~~y~G~~ 1084 (1444)
+++.|+.
T Consensus 214 i~~~~~~ 220 (237)
T cd03252 214 IVEQGSH 220 (237)
T ss_pred EEEEcCH
Confidence 9999875
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=314.75 Aligned_cols=211 Identities=20% Similarity=0.288 Sum_probs=167.6
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCeecEEEECCccCCCC-----CccceEEEEcCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1444)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 35899999999999999999999999999999999998641 12389999999987532 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccccc
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1444)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1444)
++ .||+||+.++.+..+.... .+....++.+++.+||.+..+...
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~i~~~~- 157 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKDK---------------------------------KVLDEIVETSLKQAALWDQVKDDL- 157 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCchhhhhh-
Confidence 77 6999999986532211000 001123456788888864322222
Q ss_pred CccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEE
Q 000524 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1444)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1444)
+...+.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++. .+ ++|+.++|..+++.+++|++++
T Consensus 158 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiii~tH~~~~~~~~~d~i~~ 234 (267)
T PRK14237 158 HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK--KN-YTIIIVTHNMQQAARASDYTAF 234 (267)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cC-CEEEEEecCHHHHHHhcCEEEE
Confidence 34566899999999999999999999999999999999999999999999874 24 4556677888889999999999
Q ss_pred EcCCeEEEecChhhHH
Q 000524 398 LSDGQIVYQGPRELVL 413 (1444)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1444)
|++|++++.|+.+++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 235 FYLGDLIEYDKTRNIF 250 (267)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988763
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=307.02 Aligned_cols=199 Identities=21% Similarity=0.318 Sum_probs=165.0
Q ss_pred EeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC-ccceEEEEcCCCCCCCCCCHHH
Q 000524 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-PERTAAYISQHDNHIGEMTVRE 245 (1444)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (1444)
+++|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 357999999999999999999999999999999999987 999999999875432 2467999999999999999999
Q ss_pred HHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccccc
Q 000524 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1444)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1444)
|+.+...... ... .+....++++++.+||++..++.+ +.||
T Consensus 90 n~~~~~~~~~-~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-KLN---------------------------------AEQQEKVVDAAQQVGIADYLDRLP-----EQLS 130 (213)
T ss_pred HHHhHhhccC-Ccc---------------------------------HHHHHHHHHHHHHcCcHHHhhCCc-----ccCC
Confidence 9987532100 000 001123566889999987666554 4799
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 000524 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1444)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~ 405 (1444)
||||||++||++++.+|++++|||||+|||..++..+.+.|+++.... +++|+.++|+.+++.+++|++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~-~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSER-QRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 999999999999999999999999999999999999999999886533 4555557888888889999999999999999
Q ss_pred ecC
Q 000524 406 QGP 408 (1444)
Q Consensus 406 ~G~ 408 (1444)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=315.49 Aligned_cols=218 Identities=19% Similarity=0.250 Sum_probs=174.2
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCC--c-eEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG--G-YITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g 922 (1444)
.+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|.... . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 378899988763 23699999999999999999999999999999999996431 1 2479999999
Q ss_pred ccCC-----cccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000524 923 YPKK-----QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 997 (1444)
Q Consensus 923 ~~~~-----~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1444)
.++. ...+++.++|++|++.+++ .|+.||+.+....+. .. ...++.++++++.+++.+..+.... ..+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLK-QSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhc-CCcc
Confidence 8753 1234567899999988877 599999987654321 11 1233456778888887532111111 1246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec---
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR--- 1074 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~--- 1074 (1444)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999975 589999999986 68899999999982
Q ss_pred -----CcEEEEEcCC
Q 000524 1075 -----GGQEIYVGPL 1084 (1444)
Q Consensus 1075 -----gg~~~y~G~~ 1084 (1444)
.|+++..|+.
T Consensus 229 ~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 229 EGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccCceEEEeCCH
Confidence 4899999875
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=303.62 Aligned_cols=196 Identities=27% Similarity=0.391 Sum_probs=170.5
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC-------ccceEEEEcCCCCCCCCCC
Q 000524 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 242 (1444)
++++..+.-.+|||-|+||||||||+|+|+|+..|+ +|.|.+||..+.+.. .+|++|||+||-.+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 577777775799999999999999999999999998 999999998764321 2589999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
|+-||.|+.... .....|.+.+.||++|..+.+ +.
T Consensus 93 VrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~R~-----P~ 127 (352)
T COG4148 93 VRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLDRY-----PG 127 (352)
T ss_pred Eecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHhhC-----CC
Confidence 999999975321 001246788999999988754 45
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
.|||||||||+|||||++.|++|+||||.+.||-....+|+-.|.++.++ -+.-|+.++|-..|+.+++|+|++|++|+
T Consensus 128 ~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e-~~IPIlYVSHS~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDE-INIPILYVSHSLDEVLRLADRVVVLENGK 206 (352)
T ss_pred ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHh-cCCCEEEEecCHHHHHhhhheEEEecCCe
Confidence 79999999999999999999999999999999999999999999998764 45667778999999999999999999999
Q ss_pred EEEecChhhHHH
Q 000524 403 IVYQGPRELVLE 414 (1444)
Q Consensus 403 iv~~G~~~~~~~ 414 (1444)
+...|+.+++.+
T Consensus 207 V~A~g~~e~v~~ 218 (352)
T COG4148 207 VKASGPLEEVWG 218 (352)
T ss_pred EEecCcHHHHhc
Confidence 999999998853
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=360.67 Aligned_cols=208 Identities=28% Similarity=0.469 Sum_probs=168.3
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1444)
.++|+|+|++|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|. .
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~ 553 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-G 553 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhh-h
Confidence 35899999999999999999999999999999999999998 9999999999987654 578999999987776 5
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
|++|||.++.. +.+.++..+++...+ .++.++ .|++..||.+|+.+
T Consensus 554 TI~eNi~~~~~-------------------------~~~~~~i~~a~~~~~------l~~~i~--~lp~gl~T~i~e~G- 599 (694)
T TIGR03375 554 TLRDNIALGAP-------------------------YADDEEILRAAELAG------VTEFVR--RHPDGLDMQIGERG- 599 (694)
T ss_pred hHHHHHhCCCC-------------------------CCCHHHHHHHHHHcC------hHHHHH--hCcccccceecCCC-
Confidence 99999987521 111111111111111 111222 46778899999865
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
..||||||||++||||++++|++++||||||+||+.+...|.+.|+++. .++|+|+ ++|.. ++.+.+|+|++|++|
T Consensus 600 ~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~ii-ItHrl-~~~~~~D~iivl~~G 675 (694)
T TIGR03375 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVL-VTHRT-SLLDLVDRIIVMDNG 675 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEE-EecCH-HHHHhCCEEEEEeCC
Confidence 4799999999999999999999999999999999999999999998864 3456666 44544 456889999999999
Q ss_pred eEEEecChhhHHH
Q 000524 402 QIVYQGPRELVLE 414 (1444)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1444)
+++++|+++++++
T Consensus 676 ~i~e~G~~~eLl~ 688 (694)
T TIGR03375 676 RIVADGPKDQVLE 688 (694)
T ss_pred EEEeeCCHHHHHH
Confidence 9999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=316.93 Aligned_cols=209 Identities=25% Similarity=0.373 Sum_probs=170.3
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 46999999999999999999999999999999999999887 9999999988754322 35699999998888889
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
||.||+.++..-.. ..+ .... .+....++.+++.+||++..++.+
T Consensus 92 tv~~~i~~~~~~~~--~~~----------------~~~~------------~~~~~~~~~~l~~~~l~~~~~~~~----- 136 (255)
T PRK11231 92 TVRELVAYGRSPWL--SLW----------------GRLS------------AEDNARVNQAMEQTRINHLADRRL----- 136 (255)
T ss_pred cHHHHHHhccchhh--hhc----------------cCCC------------HHHHHHHHHHHHHcCCHHHHcCCc-----
Confidence 99999988531000 000 0000 001123567888999987666654
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
+.|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.. .+ ++|+.++|+.+++.+++|++++|++|
T Consensus 137 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~-~tiii~tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 137 TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QG-KTVVTVLHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEECCHHHHHHhcCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998764 34 45555778888999999999999999
Q ss_pred eEEEecChhhHH
Q 000524 402 QIVYQGPRELVL 413 (1444)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1444)
++++.|+.+++.
T Consensus 215 ~i~~~~~~~~~~ 226 (255)
T PRK11231 215 HVMAQGTPEEVM 226 (255)
T ss_pred eEEEEcCHHHhc
Confidence 999999987663
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=360.60 Aligned_cols=206 Identities=23% Similarity=0.391 Sum_probs=162.3
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1444)
+++|+|+|++++|||.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|. .
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-G 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCccccc-c
Confidence 46899999999999999999999999999999999999998 9999999999887654 478999999987665 6
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
|+||||.++..-. +.++..+++...+ .++.++ .|++..||.+|+.+
T Consensus 570 TIreNI~~g~~~~-------------------------~~e~i~~al~~a~------l~~~i~--~lp~GldT~ige~G- 615 (711)
T TIGR00958 570 SVRENIAYGLTDT-------------------------PDEEIMAAAKAAN------AHDFIM--EFPNGYDTEVGEKG- 615 (711)
T ss_pred CHHHHHhcCCCCC-------------------------CHHHHHHHHHHcC------CHHHHH--hCCCccCCcccCCC-
Confidence 9999999863210 0011111111100 111222 35667899999764
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
..||||||||++||||++++|+|++||||||+||+.+...|.+ ... ..++|+|+ ++|.. ++.+.+|+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~---~~~~TvIi-ItHrl-~~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS---RASRTVLL-IAHRL-STVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc---cCCCeEEE-EeccH-HHHHhCCEEEEEECC
Confidence 5799999999999999999999999999999999999998888 221 23455555 55554 456779999999999
Q ss_pred eEEEecChhhHHH
Q 000524 402 QIVYQGPRELVLE 414 (1444)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1444)
+|+++|+++++++
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999999865
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=316.18 Aligned_cols=208 Identities=27% Similarity=0.396 Sum_probs=170.0
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1444)
..+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 45999999999999999999999999999999999999987 9999999998765432 34689999998778889
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
||+||+.++..... ... . .+ . .+....++.+++.+||.+..++.+
T Consensus 91 tv~e~l~~~~~~~~---------~~~------~-~~-~-------------~~~~~~~~~~l~~~~l~~~~~~~~----- 135 (256)
T TIGR03873 91 TVRDVVALGRIPHR---------SLW------A-GD-S-------------PHDAAVVDRALARTELSHLADRDM----- 135 (256)
T ss_pred CHHHHHHhcchhhh---------hhc------c-CC-C-------------HHHHHHHHHHHHHcCcHhhhcCCc-----
Confidence 99999987531000 000 0 00 0 001123567788999987666554
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
..|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.. .+ ++|+.++|..+++.+++|+|++|++|
T Consensus 136 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 136 STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TG-VTVVAALHDLNLAASYCDHVVVLDGG 213 (256)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 46999999999999999999999999999999999999999999998753 34 45666778888999999999999999
Q ss_pred eEEEecChhhH
Q 000524 402 QIVYQGPRELV 412 (1444)
Q Consensus 402 ~iv~~G~~~~~ 412 (1444)
++++.|+.+++
T Consensus 214 ~i~~~g~~~~~ 224 (256)
T TIGR03873 214 RVVAAGPPREV 224 (256)
T ss_pred CEEEecCHHHh
Confidence 99999998765
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=312.80 Aligned_cols=218 Identities=22% Similarity=0.283 Sum_probs=176.0
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCC--C-ceEEEEEEEcCc
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--G-GYITGNITISGY 923 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g~ 923 (1444)
+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... + .+.+|+|.+||.
T Consensus 4 l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 70 (250)
T PRK14266 4 IEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGV 70 (250)
T ss_pred EEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCE
Confidence 67888887763 2469999999999999999999999999999999999643 1 125799999998
Q ss_pred cCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000524 924 PKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 998 (1444)
Q Consensus 924 ~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 998 (1444)
++.. ...++.++|++|++.+++. |+.||+.+...... ..+.+...+.+.++++.+++.+....... .....
T Consensus 71 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~ 146 (250)
T PRK14266 71 DIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLD-KSALG 146 (250)
T ss_pred EcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCccc
Confidence 7642 1345679999999888874 99999987643221 11223345668889999998643222222 22568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEE
Q 000524 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1078 (1444)
Q Consensus 999 lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~ 1078 (1444)
||+|||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 147 LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~i 223 (250)
T PRK14266 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GEI 223 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CeE
Confidence 999999999999999999999999999999999999999999999854 899999999986 68888999999985 799
Q ss_pred EEEcCC
Q 000524 1079 IYVGPL 1084 (1444)
Q Consensus 1079 ~y~G~~ 1084 (1444)
++.|+.
T Consensus 224 ~~~g~~ 229 (250)
T PRK14266 224 IESGLT 229 (250)
T ss_pred EEeCCH
Confidence 999875
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=296.29 Aligned_cols=168 Identities=28% Similarity=0.415 Sum_probs=148.3
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
.++|+++.++ ...+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEccc
Confidence 4677776653 23599999999999999999999999999999999998653 48999999987643
Q ss_pred --ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000524 928 --ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 1005 (1444)
Q Consensus 928 --~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1005 (1444)
..+++.++|++|++.+++..|+.|++. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567899999998888899999873 8999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000524 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075 (1444)
Q Consensus 1006 Rl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~g 1075 (1444)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. ++.+.+|++++|++|
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999877899999999986 577789999999874
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=344.40 Aligned_cols=216 Identities=28% Similarity=0.328 Sum_probs=179.9
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
-++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 377889888763 24699999999999999999999999999999999997653 479999999876
Q ss_pred Cc----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000524 926 KQ----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 1001 (1444)
Q Consensus 926 ~~----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1001 (1444)
.. ..+++.+||++|++.+++.+||.|++.+....+.....+..+.++.++++++.++|.+..+.. +..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCH
Confidence 42 123567899999998899999999998853211111122334445688999999998766655 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEE
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1081 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~ 1081 (1444)
|||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+.||++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999878999999999986 57788999999986 788876
Q ss_pred cC
Q 000524 1082 GP 1083 (1444)
Q Consensus 1082 G~ 1083 (1444)
++
T Consensus 222 ~~ 223 (501)
T PRK11288 222 FD 223 (501)
T ss_pred cC
Confidence 65
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=312.21 Aligned_cols=215 Identities=23% Similarity=0.314 Sum_probs=174.6
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCC--c--eEEEEEEEcC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG--G--YITGNITISG 922 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~--~~~G~i~i~g 922 (1444)
+.++++++++. ++.+|+|+||.+.+||+++|+|+||||||||+++|+|...+ | .+.|++.++|
T Consensus 11 i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g 77 (257)
T PRK14246 11 FNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFG 77 (257)
T ss_pred eeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECC
Confidence 77888887763 34699999999999999999999999999999999997542 2 1236666666
Q ss_pred ccCCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccCCC
Q 000524 923 YPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL----IQSLVGLPG 995 (1444)
Q Consensus 923 ~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~~~ 995 (1444)
.+... ...++.++|++|++.+++.+|++||+.+...... ....++..+.++++++.+++.+. .+..
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----- 150 (257)
T PRK14246 78 KDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP----- 150 (257)
T ss_pred cccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC-----
Confidence 65432 2345678999999999999999999988643321 11233344568899999999642 2332
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000524 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075 (1444)
Q Consensus 996 ~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~g 1075 (1444)
+..||+|||||++|||+|+.+|++|+|||||+|||..+...+.+.|+++.+ ++|||+++|++. .+.+.||++++|++
T Consensus 151 ~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~- 227 (257)
T PRK14246 151 ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN- 227 (257)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-
Confidence 467999999999999999999999999999999999999999999999864 699999999986 57789999999985
Q ss_pred cEEEEEcCC
Q 000524 1076 GQEIYVGPL 1084 (1444)
Q Consensus 1076 g~~~y~G~~ 1084 (1444)
|+++..|+.
T Consensus 228 g~i~~~g~~ 236 (257)
T PRK14246 228 GELVEWGSS 236 (257)
T ss_pred CEEEEECCH
Confidence 799999875
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=312.47 Aligned_cols=214 Identities=26% Similarity=0.297 Sum_probs=172.6
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc--
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP-- 924 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~-- 924 (1444)
+.++|+++.++ ...+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (253)
T TIGR02323 4 LQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSGA 68 (253)
T ss_pred EEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEeccccc
Confidence 67888887763 23589999999999999999999999999999999998653 48999999976
Q ss_pred ---CCcc-------cccceEEEEecCCC--CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccc
Q 000524 925 ---KKQE-------TFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLV 991 (1444)
Q Consensus 925 ---~~~~-------~~~~~~gyv~q~~~--~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v 991 (1444)
+... ..++.++|++|++. ..+.+|+.|++.+..... .. .......+.++++++.+++.+ ..++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~- 145 (253)
T TIGR02323 69 ELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDL- 145 (253)
T ss_pred ccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcC-
Confidence 3221 12346899999975 345678999986542211 11 111233456889999999963 55554
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEE
Q 000524 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELF 1070 (1444)
Q Consensus 992 g~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ 1070 (1444)
++.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.++ |.|||+++|++. ++.+.+|+++
T Consensus 146 ----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~ 220 (253)
T TIGR02323 146 ----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLL 220 (253)
T ss_pred ----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEE
Confidence 4679999999999999999999999999999999999999999999998764 899999999986 5777899999
Q ss_pred EEecCcEEEEEcCC
Q 000524 1071 LMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1071 ll~~gg~~~y~G~~ 1084 (1444)
+|++ |++++.|+.
T Consensus 221 ~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 221 VMQQ-GRVVESGLT 233 (253)
T ss_pred EEEC-CEEEEECCH
Confidence 9986 799999875
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=315.53 Aligned_cols=212 Identities=21% Similarity=0.333 Sum_probs=166.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CeecEEEECCccCCCC-----CccceEEEEcCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|.- ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccccc
Confidence 358999999999999999999999999999999999986410 1389999999887421 124579999999989
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccccc
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1444)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1444)
++.+||+||+.++....+.... .+....++.+++.+||........
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (258)
T PRK14241 97 FPTMSIRDNVVAGLKLNGVRNK---------------------------------KDLDELVEKSLRGANLWNEVKDRL- 142 (258)
T ss_pred CCCCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhHh-
Confidence 9999999999886543210000 001123566788888742111111
Q ss_pred CccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEE
Q 000524 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1444)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1444)
+..+..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ +. +|+.++|+..++.+++|+|++
T Consensus 143 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~-tviivsH~~~~~~~~~d~i~~ 219 (258)
T PRK14241 143 DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DY-TIVIVTHNMQQAARVSDQTAF 219 (258)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CC-EEEEEecCHHHHHHhCCEEEE
Confidence 234457999999999999999999999999999999999999999999998853 34 555577888889999999999
Q ss_pred Ec------CCeEEEecChhhHH
Q 000524 398 LS------DGQIVYQGPRELVL 413 (1444)
Q Consensus 398 L~------~G~iv~~G~~~~~~ 413 (1444)
|+ +|++++.|+.+++.
T Consensus 220 l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 220 FNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EecccCCCCceEEecCCHHHHH
Confidence 97 79999999988764
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=314.15 Aligned_cols=210 Identities=18% Similarity=0.275 Sum_probs=166.3
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC---CCCCCCeecEEEECCccCCCCC-----ccceEEEEcCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK---LDSSLKVSGRVTYNGHDMGEFV-----PERTAAYISQHDN 236 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~---l~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~ 236 (1444)
+++|+|+|+.+++|++++|+||||||||||+++|+|. .++. ..+|+|.++|+++.... .++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 3599999999999999999999999999999999997 3331 13899999999875421 2357999999988
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccc
Q 000524 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1444)
+++ .||+||+.++.+..+.... ......++++++.+||.+...+..
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKDN---------------------------------AFIRQRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCcchhhhh
Confidence 776 6999999886543211000 001123566788888864322222
Q ss_pred cCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEE
Q 000524 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1444)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1444)
+...+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. .+ ++|+.++|+..++.+.+|+|+
T Consensus 141 -~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~d~v~ 216 (250)
T PRK14245 141 -KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK--KD-YTIVIVTHNMQQAARVSDKTA 216 (250)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHhhCCEEE
Confidence 23455799999999999999999999999999999999999999999999874 24 455557788888999999999
Q ss_pred EEcCCeEEEecChhhHH
Q 000524 397 LLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1444)
+|++|+++++|+.+++.
T Consensus 217 ~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 217 FFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999998874
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=308.89 Aligned_cols=195 Identities=22% Similarity=0.369 Sum_probs=161.7
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCC-----CccceEEEEcCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNHIG 239 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~ 239 (1444)
+.+|+|+|+.++||++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 45999999999999999999999999999999999999987 99999999987421 12467999999998899
Q ss_pred CCCHHHHHHHhhh-hcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 240 EMTVRETLAFSAR-CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 240 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
.+||+||+.++.. .++.. . .+....++.+++.+||++..++.+
T Consensus 90 ~~t~~e~l~~~~~~~~~~~------~----------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 133 (213)
T cd03262 90 HLTVLENITLAPIKVKGMS------K----------------------------AEAEERALELLEKVGLADKADAYP-- 133 (213)
T ss_pred CCcHHHHHHhHHHHhcCCC------H----------------------------HHHHHHHHHHHHHcCCHhHhhhCc--
Confidence 9999999988642 11100 0 001123566788999987666554
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
+.|||||||||+||++++.+|++++|||||+|||+.+...+.+.|++++. .+ ++|+.++|+..++.+++|+|++|
T Consensus 134 ---~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 134 ---AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EG-MTMVVVTHEMGFAREVADRVIFM 208 (213)
T ss_pred ---cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999999864 34 44555788888999999999999
Q ss_pred cCCeE
Q 000524 399 SDGQI 403 (1444)
Q Consensus 399 ~~G~i 403 (1444)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=308.73 Aligned_cols=203 Identities=22% Similarity=0.370 Sum_probs=166.9
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
-+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 478899988763 2369999999999999999999999999999999999764 3489999999875
Q ss_pred Cc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCH
Q 000524 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLST 1001 (1444)
Q Consensus 926 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSg 1001 (1444)
.. ..+++.++|++|++.+++ .|++||+.+....+.. .. .++.++++++.+++. ...++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 42 224567899999988877 5999999875443321 11 123477899999996 345554 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCc
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~gg 1076 (1444)
|||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++ |.|||+++|++. ++ +.+|++++|++.+
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~ 214 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHA 214 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEeccc
Confidence 9999999999999999999999999999999999999999998764 899999999986 35 5699999996433
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=352.30 Aligned_cols=200 Identities=29% Similarity=0.452 Sum_probs=164.6
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1444)
++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+ .|
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~t 429 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-AT 429 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhc-cc
Confidence 5899999999999999999999999999999999999998 9999999999887654 467999999987765 69
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCC------cccccccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL------EVCADTMV 316 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL------~~~~dt~v 316 (1444)
++||+.++..- .+.++ ++..++..|+ ++..||.|
T Consensus 430 i~~Ni~~~~~~-------------------------~~~~~---------------i~~al~~~~l~~~i~~p~GldT~v 469 (574)
T PRK11160 430 LRDNLLLAAPN-------------------------ASDEA---------------LIEVLQQVGLEKLLEDDKGLNAWL 469 (574)
T ss_pred HHHHhhcCCCc-------------------------cCHHH---------------HHHHHHHcCCHHHHcCccccCchh
Confidence 99999886310 00001 1112222222 56789999
Q ss_pred cCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEE
Q 000524 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1444)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1444)
|+.+ +.||||||||++|||+++++|++++|||||++||+.++..|.+.|++.. .++|+|++. |..+. ...+|+|+
T Consensus 470 ge~g-~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiit-Hr~~~-~~~~d~i~ 544 (574)
T PRK11160 470 GEGG-RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMIT-HRLTG-LEQFDRIC 544 (574)
T ss_pred cCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEe-cChhH-HHhCCEEE
Confidence 9764 5799999999999999999999999999999999999999999999864 356666654 44444 46799999
Q ss_pred EEcCCeEEEecChhhHHH
Q 000524 397 LLSDGQIVYQGPRELVLE 414 (1444)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1444)
+|++|++++.|+++++++
T Consensus 545 ~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 545 VMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEeCCeEEEeCCHHHHHh
Confidence 999999999999998864
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=316.11 Aligned_cols=211 Identities=21% Similarity=0.323 Sum_probs=166.2
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCeecEEEECCccCCCC-----CccceEEEEcCCCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNHI 238 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1444)
.+|+|+|+.|+||++++|+|||||||||||++|+|.++|. ...+|+|+++|+++... ..++.++|++|++..+
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 112 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPF 112 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCC
Confidence 5899999999999999999999999999999999998741 01389999999987532 1245799999998878
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+. ||.||+.++.+.++.... + .+....++.+++.+||.+...... +
T Consensus 113 ~~-tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 158 (267)
T PRK14235 113 PK-SIYENVAYGPRIHGLARS--------K------------------------AELDEIVETSLRKAGLWEEVKDRL-H 158 (267)
T ss_pred CC-cHHHHHHHHHHhcccccc--------h------------------------HHHHHHHHHHHHHcCCchhhhHHh-h
Confidence 74 999999987543221000 0 001123566788889864211111 2
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
..++.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+ +. +|+.++|+.+++.+++|++++|
T Consensus 159 ~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~-tiiivtH~~~~~~~~~d~v~~l 235 (267)
T PRK14235 159 EPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NY-TIVIVTHSMQQAARVSQRTAFF 235 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CC-eEEEEEcCHHHHHhhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999998753 44 5555778888889999999999
Q ss_pred cCCeEEEecChhhHH
Q 000524 399 SDGQIVYQGPRELVL 413 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1444)
++|+++.+|+.+++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 236 HLGNLVEVGDTEKMF 250 (267)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987763
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=314.11 Aligned_cols=207 Identities=24% Similarity=0.348 Sum_probs=167.6
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCcc-----CCCCCc-------cceEEEEc
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD-----MGEFVP-------ERTAAYIS 232 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~-----~~~~~~-------~~~~~yv~ 232 (1444)
+.+|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 35899999999999999999999999999999999999987 9999999987 654322 24699999
Q ss_pred CCCC--CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcc
Q 000524 233 QHDN--HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV 310 (1444)
Q Consensus 233 Q~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 310 (1444)
|++. +.+.+|+.||+.+.....+... + .+....++++++.+|+.+
T Consensus 96 q~~~~~~~~~~~~~~~i~~~~~~~~~~~-~--------------------------------~~~~~~~~~~l~~~~l~~ 142 (258)
T PRK11701 96 QHPRDGLRMQVSAGGNIGERLMAVGARH-Y--------------------------------GDIRATAGDWLERVEIDA 142 (258)
T ss_pred eCcccccCccccHHHHHHHHHHHhccCc-H--------------------------------HHHHHHHHHHHHHcCCCh
Confidence 9973 5777899999976432110000 0 001123567888999964
Q ss_pred -cccccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHH
Q 000524 311 -CADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETY 389 (1444)
Q Consensus 311 -~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~ 389 (1444)
..++. +..|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++.... +.+|+.++|+..++.
T Consensus 143 ~~~~~~-----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~isH~~~~~~ 216 (258)
T PRK11701 143 ARIDDL-----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL-GLAVVIVTHDLAVAR 216 (258)
T ss_pred hHHhCC-----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHH
Confidence 44543 35799999999999999999999999999999999999999999999876533 456666888888999
Q ss_pred hhcCeEEEEcCCeEEEecChhhHH
Q 000524 390 DLFDDIILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 390 ~~fD~vilL~~G~iv~~G~~~~~~ 413 (1444)
+.+|+|++|++|++++.|+.+++.
T Consensus 217 ~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 217 LLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999988763
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=325.73 Aligned_cols=201 Identities=28% Similarity=0.411 Sum_probs=165.2
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1444)
.++|+|+|+++++||.+||+|++|||||||++.|+|-++|+ +|+|+.||.++.+... ++.++.++|.. |+..-
T Consensus 351 ~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~-hlF~~ 426 (573)
T COG4987 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRV-HLFSG 426 (573)
T ss_pred cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccch-HHHHH
Confidence 46999999999999999999999999999999999999998 9999999999887765 46889999976 55567
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhC-------Ccccccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-------LEVCADT 314 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 314 (1444)
|+|+||..+.. +... +.+ -++++..| .++..||
T Consensus 427 Tlr~NL~lA~~-------------------------~AsD-Eel--------------~~aL~qvgL~~l~~~~p~gl~t 466 (573)
T COG4987 427 TLRDNLRLANP-------------------------DASD-EEL--------------WAALQQVGLEKLLESAPDGLNT 466 (573)
T ss_pred HHHHHHhhcCC-------------------------CCCH-HHH--------------HHHHHHcCHHHHHHhChhhhhc
Confidence 99999998632 1111 111 11223333 3456688
Q ss_pred cccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCe
Q 000524 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1444)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1444)
.+|+.+ +.||||||||++|||+|++++++++|||||.|||+.|..++++.|.+.+ .++|+++ ++|+... .+.||+
T Consensus 467 ~lge~G-~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~-vTHrL~~-le~~dr 541 (573)
T COG4987 467 WLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLM-VTHRLRG-LERMDR 541 (573)
T ss_pred hhccCC-CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEE-Eeccccc-HhhcCE
Confidence 999755 5799999999999999999999999999999999999999999998754 4566655 5665554 467899
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 000524 395 IILLSDGQIVYQGPRELVLE 414 (1444)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1444)
|++|++|+++++|.+.+++.
T Consensus 542 Iivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 542 IIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEEEECCeeeecCCHHhhhc
Confidence 99999999999999998874
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=361.10 Aligned_cols=211 Identities=26% Similarity=0.402 Sum_probs=175.6
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 924 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1444)
..++|+||+|+|+.. +++.+|+|+|++|+|||++||+||||||||||+++|+|...+ .+|+|.+||.|
T Consensus 477 ~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 544 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVP 544 (711)
T ss_pred CeEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEE
Confidence 469999999998631 124699999999999999999999999999999999998764 48999999998
Q ss_pred CCc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000524 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 994 (1444)
Q Consensus 925 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1444)
+++ ..+++.++||+|++.++. .|++||+.++. + +.+ ++.++++++..++.+. .|+.+|..
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~ 614 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL----T-DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614 (711)
T ss_pred HHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC----C-CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC
Confidence 654 346778999999998875 79999998752 1 122 3347788888887654 45666654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
..+||||||||++|||+|+++|+||+||||||+||++++..+++ .. ..+++|+|+++|+++ ..+.+|+|++|++
T Consensus 615 -G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~ 688 (711)
T TIGR00958 615 -GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKK 688 (711)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEEC
Confidence 46899999999999999999999999999999999999999998 22 235899999999985 5678999999985
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|+++..|+.
T Consensus 689 -G~ive~Gt~ 697 (711)
T TIGR00958 689 -GSVVEMGTH 697 (711)
T ss_pred -CEEEEeeCH
Confidence 899999984
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=312.88 Aligned_cols=211 Identities=20% Similarity=0.315 Sum_probs=165.9
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCeecEEEECCccCCCCC-----ccceEEEEcCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEFV-----PERTAAYISQHDNH 237 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1444)
+.+|+|+|+.+++||+++|+|||||||||||++|+|..+|. ...+|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 35899999999999999999999999999999999998751 113899999999875321 24579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccccc
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1444)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1444)
++ +|++||+.|.....+.... .+...+++.+++.+||........
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 141 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKDK---------------------------------KELDKIVEWALKKAALWDEVKDDL- 141 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhhhhHh-
Confidence 87 8999999986543221000 001123456678888742110111
Q ss_pred CccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEE
Q 000524 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1444)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1444)
+...+.||||||||++||++++.+|++++|||||+|||+.++.++.+.|+++.. +. +|+.++|+..++.+++|+|++
T Consensus 142 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~-tiiivsH~~~~~~~~~d~v~~ 218 (251)
T PRK14270 142 KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EY-TIVIVTHNMQQASRVSDYTAF 218 (251)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CC-eEEEEEcCHHHHHHhcCEEEE
Confidence 234557999999999999999999999999999999999999999999998753 34 455577778889999999999
Q ss_pred EcCCeEEEecChhhHH
Q 000524 398 LSDGQIVYQGPRELVL 413 (1444)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1444)
|++|++++.|+.+++.
T Consensus 219 l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 219 FLMGDLIEFNKTEKIF 234 (251)
T ss_pred EECCeEEEeCCHHHHh
Confidence 9999999999988764
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=305.96 Aligned_cols=192 Identities=27% Similarity=0.395 Sum_probs=160.1
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC-------ccceEEEEcCCCCCCCCCC
Q 000524 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 242 (1444)
|+|+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999987 999999998864311 2357999999998898999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
++||+.+..... .. . .....++.+++.+||++..+..+ +
T Consensus 92 ~~~~l~~~~~~~---~~--------~-------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 130 (214)
T cd03297 92 VRENLAFGLKRK---RN--------R-------------------------EDRISVDELLDLLGLDHLLNRYP-----A 130 (214)
T ss_pred HHHHHHHHHhhC---CH--------H-------------------------HHHHHHHHHHHHcCCHhHhhcCc-----c
Confidence 999998764211 00 0 00123566788999987666544 4
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++...+ ++|+.++|+.+++.+++|++++|++|+
T Consensus 131 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN-IPVIFVTHDLSEAEYLADRIVVMEDGR 209 (214)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-cEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999875334 455667788888999999999999999
Q ss_pred EEEec
Q 000524 403 IVYQG 407 (1444)
Q Consensus 403 iv~~G 407 (1444)
++.+|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=312.24 Aligned_cols=197 Identities=25% Similarity=0.372 Sum_probs=167.9
Q ss_pred EeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc---ccccceEEEEecCCCCCCCCcHH
Q 000524 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTVY 950 (1444)
Q Consensus 874 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv~ 950 (1444)
+|+|+|+.+++||+++|+|+||||||||+++|+|... .+|+|.++|.+... ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999763 27999999987643 12345689999998888889999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 000524 951 ESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1023 (1444)
Q Consensus 951 e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~-------~p~illLD 1023 (1444)
|++.+.... ....+...+.++++++.++|.+..++. +..||||||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 112223345688999999998776665 35799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCC
Q 000524 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1024 EPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~ 1084 (1444)
|||+|||+.++..+.+.|++++++|.|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 217 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRR 217 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999877999999999986 58889999999985 799999875
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=342.02 Aligned_cols=123 Identities=23% Similarity=0.292 Sum_probs=98.9
Q ss_pred CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhh---CCCEEE
Q 000524 946 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELVA---NPSIIF 1021 (1444)
Q Consensus 946 ~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGqrkRl~ia~~L~~---~p~ill 1021 (1444)
.+||.|.+.|...+. .. ....++++.+||... .+.. ...|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~i------~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---SI------SRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---ch------hHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 356667766654331 00 124577888898652 3433 46799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCcEEEEEcCC
Q 000524 1022 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-----RGGQEIYVGPL 1084 (1444)
Q Consensus 1022 LDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~-----~gg~~~y~G~~ 1084 (1444)
|||||+|||+.+...+++.|+++.++|.|||+++|++. ....+|+++.|. +||++++.|+.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999985 447899999994 57999999985
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=343.68 Aligned_cols=206 Identities=24% Similarity=0.314 Sum_probs=173.5
Q ss_pred eEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEEecCCCCCCCC
Q 000524 872 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQNDIHSPFV 947 (1444)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~~~~~~l 947 (1444)
+.+|+|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++... ..++.++|++|+...++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 4699999999999999999999999999999999998653 489999999876421 2345689999999888899
Q ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000524 948 TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027 (1444)
Q Consensus 948 Tv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTs 1027 (1444)
||+|++.+..........+.+...+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987532111111123333456889999999987776653 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCCCc
Q 000524 1028 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGR 1086 (1444)
Q Consensus 1028 gLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~~~ 1086 (1444)
|||+.+...+.+.|++++++|+|||+++|++. ++.+.||++++|++ |+++..|+...
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 99999999999999999878999999999986 57788999999986 79999998643
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=312.42 Aligned_cols=212 Identities=21% Similarity=0.294 Sum_probs=167.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCeecEEEECCccCCCC-----CccceEEEEcCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1444)
+.+|+|+|+.|++||+++|+|||||||||||++|+|.++ |+...+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 359999999999999999999999999999999999986 3111389999999987532 124679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccccc
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1444)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1444)
++.+||+||+.++.+..+.... .+....++++++.+||........
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVNR---------------------------------SEADEIVESSLKRVALWDEVKDRL- 142 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-
Confidence 9999999999876432110000 001123566788888854211111
Q ss_pred CccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEE
Q 000524 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1444)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1444)
+..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|..+++.+++|++++
T Consensus 143 ~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~ 219 (252)
T PRK14256 143 KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSDYTAF 219 (252)
T ss_pred hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCCEEEE
Confidence 123557999999999999999999999999999999999999999999999853 3 4556677888889999999999
Q ss_pred EcCCeEEEecChhhHH
Q 000524 398 LSDGQIVYQGPRELVL 413 (1444)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1444)
|++|+++..|+.+++.
T Consensus 220 l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 220 FYMGDLVECGETKKIF 235 (252)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988763
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=312.69 Aligned_cols=210 Identities=20% Similarity=0.332 Sum_probs=164.9
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCeecEEEECCccCCCC-----CccceEEEEcCCCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNHI 238 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1444)
.+|+|+|+.+++||+++|+|||||||||||++|+|..+ |+...+|+|.++|+++... ..++.++|++|++.++
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 58999999999999999999999999999999999853 4222389999999987431 1245799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+ +||+||+.++....+.... + .....++.+++.+|+.....+.. +
T Consensus 99 ~-~tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14239 99 P-MSIYENVVYGLRLKGIKDK-Q--------------------------------VLDEAVEKSLKGASIWDEVKDRL-H 143 (252)
T ss_pred c-CcHHHHHHHHHHHcCCCcH-H--------------------------------HHHHHHHHHHHHcCCchhHHHHH-h
Confidence 7 8999999986543211000 0 01123455677777743211111 2
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
..++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.+.+|+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 144 DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQASRISDRTGFF 220 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHHHhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998753 3 45556778888899999999999
Q ss_pred cCCeEEEecChhhHH
Q 000524 399 SDGQIVYQGPRELVL 413 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1444)
++|++++.|+.+++.
T Consensus 221 ~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 221 LDGDLIEYNDTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=310.59 Aligned_cols=219 Identities=26% Similarity=0.302 Sum_probs=170.6
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.++ ++.+|+|+|+.|++|++++|+|+||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56788877763 23599999999999999999999999999999999997421145899999998764
Q ss_pred cc----cccceEEEEecCCCCCCCCcHHHHHHHHH-HhcC--C-CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000524 927 QE----TFARISGYCEQNDIHSPFVTVYESLLYSA-WLRL--P-PEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVS 997 (1444)
Q Consensus 927 ~~----~~~~~~gyv~q~~~~~~~lTv~e~l~f~a-~lr~--~-~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 997 (1444)
.. ..++.++|++|++.+++.+|+.+++.+.. .++. . .........+.++++++.+++. +..+..+ .+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 31 12346899999998888888777654321 1110 0 0111222345678899999995 3444432 13
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-cceEEEEecCc
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDA-FDELFLMKRGG 1076 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~-fD~v~ll~~gg 1076 (1444)
.||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|+++.+.|+|||+++|++. .+... +|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-G 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999999877899999999986 35454 899999985 7
Q ss_pred EEEEEcCC
Q 000524 1077 QEIYVGPL 1084 (1444)
Q Consensus 1077 ~~~y~G~~ 1084 (1444)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (248)
T PRK09580 223 RIVKSGDF 230 (248)
T ss_pred eEEEeCCH
Confidence 99999875
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=300.76 Aligned_cols=178 Identities=26% Similarity=0.327 Sum_probs=150.2
Q ss_pred eEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc-----ccccceEEEEecCCC-CCC
Q 000524 872 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-----ETFARISGYCEQNDI-HSP 945 (1444)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~q~~~-~~~ 945 (1444)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++. ...
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 4699999999999999999999999999999999998653 48999999987531 123567899999973 233
Q ss_pred CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000524 946 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025 (1444)
Q Consensus 946 ~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEP 1025 (1444)
..||+||+.+..... ..+.+...+.++++++.++|.+..++.+ ..||||||||++|||+|+.+|++|+||||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 479999998865432 1233344456889999999988777763 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000524 1026 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPG 1059 (1444)
Q Consensus 1026 TsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps 1059 (1444)
|+|||+.+...+.+.|+++.++|+|||+++|++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999877999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=311.56 Aligned_cols=220 Identities=21% Similarity=0.231 Sum_probs=175.4
Q ss_pred ceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCc---eEEEEEEEc
Q 000524 845 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITIS 921 (1444)
Q Consensus 845 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~ 921 (1444)
..+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+. +.+|+|.++
T Consensus 15 ~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~ 81 (265)
T PRK14252 15 QKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 (265)
T ss_pred ceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEc
Confidence 3588999988774 236999999999999999999999999999999999976421 258999999
Q ss_pred CccCC----c---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000524 922 GYPKK----Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLP 994 (1444)
Q Consensus 922 g~~~~----~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 994 (1444)
|.+.. . ..+++.++|++|++.+++. |++||+.+...... .......++.++++++.+++.+....... .
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~ 157 (265)
T PRK14252 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG--VKRRSILEERVENALRNAALWDEVKDRLG-D 157 (265)
T ss_pred CccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC--CChHHHHHHHHHHHHHHcCCchhhhHHHh-C
Confidence 87642 1 1345678999999988885 99999987643321 11112224457888888887531111111 1
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~ 1074 (1444)
....||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++
T Consensus 158 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~ 235 (265)
T PRK14252 158 LAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYM 235 (265)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 2457999999999999999999999999999999999999999999999865 699999999986 57789999999985
Q ss_pred CcEEEEEcCC
Q 000524 1075 GGQEIYVGPL 1084 (1444)
Q Consensus 1075 gg~~~y~G~~ 1084 (1444)
|+++..|+.
T Consensus 236 -G~i~~~g~~ 244 (265)
T PRK14252 236 -GELIEFGAT 244 (265)
T ss_pred -CEEEEeCCH
Confidence 899999875
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=311.95 Aligned_cols=206 Identities=24% Similarity=0.281 Sum_probs=165.7
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CeecEEEECCccCCCCCc-cceEEEEcCCCC--CCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHDMGEFVP-ERTAAYISQHDN--HIGEM 241 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~-~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~~l 241 (1444)
++|+|+|+.+++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|+++..... ++.++||+|++. +.+.+
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 48999999999999999999999999999999999998810 028999999998764322 257999999974 44667
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcc---cccccccC
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV---CADTMVGD 318 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~dt~vg~ 318 (1444)
|+.+++.+.++..+.. . ....++.+++.+||.+ ..++
T Consensus 97 ~~~~~~~~~~~~~~~~-~-----------------------------------~~~~~~~~l~~~~l~~~~~~~~~---- 136 (254)
T PRK10418 97 TMHTHARETCLALGKP-A-----------------------------------DDATLTAALEAVGLENAARVLKL---- 136 (254)
T ss_pred cHHHHHHHHHHHcCCC-h-----------------------------------HHHHHHHHHHHcCCCChhhhhhc----
Confidence 9999987643321100 0 0123466788999975 2333
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
..+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|..+++.+.+|++++|
T Consensus 137 -~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~-g~til~~sH~~~~~~~~~d~v~~l 214 (254)
T PRK10418 137 -YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKR-ALGMLLVTHDMGVVARLADDVAVM 214 (254)
T ss_pred -CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHHHHhCCEEEEE
Confidence 345799999999999999999999999999999999999999999999986533 445666778888888999999999
Q ss_pred cCCeEEEecChhhHH
Q 000524 399 SDGQIVYQGPRELVL 413 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1444)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 215 SHGRIVEQGDVETLF 229 (254)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999988764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=313.96 Aligned_cols=210 Identities=19% Similarity=0.306 Sum_probs=165.1
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCeecEEEECCccCCCC-----CccceEEEEcCCCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNHI 238 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1444)
.+|+|+|+.|++||+++|+|||||||||||++|+|.++ |+...+|+|.++|+++... ..++.++|++|++.++
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 58999999999999999999999999999999999986 3222489999999987531 1245799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+. ||+||+.|..+..+.... .+...+++.+++.+||.+...... +
T Consensus 106 ~~-tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~l-~ 150 (259)
T PRK14274 106 PQ-SIFDNVAYGPRIHGTKNK---------------------------------KKLQEIVEKSLKDVALWDEVKDRL-H 150 (259)
T ss_pred cc-CHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhhh-h
Confidence 75 999999886433211000 001123456677888753211111 2
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. .++ +++.++|+.+++.+.+|++++|
T Consensus 151 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~-tiiivtH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 151 TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK--EKY-TIVIVTHNMQQAARVSDQTAFF 227 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--cCC-EEEEEEcCHHHHHHhCCEEEEE
Confidence 3455799999999999999999999999999999999999999999999874 244 4555777788889999999999
Q ss_pred cCCeEEEecChhhHH
Q 000524 399 SDGQIVYQGPRELVL 413 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1444)
++|+++.+|+++++.
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999988764
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=324.68 Aligned_cols=211 Identities=24% Similarity=0.367 Sum_probs=178.5
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.++++|++++++.+ ..++|+|+|+++++||++||+|+||||||||++.|+|... +.+|+|++||.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 68999999999743 3469999999999999999999999999999999999765 4589999999886
Q ss_pred Cc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCC
Q 000524 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS-------LVGLPG 995 (1444)
Q Consensus 926 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-------~vg~~~ 995 (1444)
.. ...++.++.++|...++ .-|+++||..+. | +.+ ++.++++++.+||++.... .+|. +
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF-~~Tlr~NL~lA~----~-~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge-~ 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLF-SGTLRDNLRLAN----P-DAS----DEELWAALQQVGLEKLLESAPDGLNTWLGE-G 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHH-HHHHHHHHhhcC----C-CCC----HHHHHHHHHHcCHHHHHHhChhhhhchhcc-C
Confidence 43 33566788899987665 469999997642 2 222 3448899999999876544 4554 4
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000524 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075 (1444)
Q Consensus 996 ~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~g 1075 (1444)
.+.||||||||++|||+|++|.++++|||||.|||+.|+++|++.|.+-++ |+|+|++||+.. -.+.||+|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 578999999999999999999999999999999999999999999988764 899999999975 4688999999985
Q ss_pred cEEEEEcCC
Q 000524 1076 GQEIYVGPL 1084 (1444)
Q Consensus 1076 g~~~y~G~~ 1084 (1444)
|+++..|..
T Consensus 548 Gkiie~G~~ 556 (573)
T COG4987 548 GKIIEEGTH 556 (573)
T ss_pred CeeeecCCH
Confidence 899999975
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=308.81 Aligned_cols=209 Identities=25% Similarity=0.411 Sum_probs=168.1
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|+++.+.. ..+.+|+|+|+.+++|++++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEhH
Confidence 667888776531 123599999999999999999999999999999999998653 4799999998753
Q ss_pred c---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccccc------CCCCC
Q 000524 927 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG------LPGVS 997 (1444)
Q Consensus 927 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg------~~~~~ 997 (1444)
. ...++.++|++|++..++ .|+.|++.+... ... ...+.++++.+++.+..+..+. .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 223567899999988776 699999876421 111 2235678888999877665431 11245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||+++|++. ..+.+|++++|++ |+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~--~~~~~d~v~~l~~-g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS--LLDLVDRIIVMDS-GR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH--HHHhCCEEEEEeC-Ce
Confidence 89999999999999999999999999999999999999999999998764 89999999986 3479999999986 78
Q ss_pred EEEEc
Q 000524 1078 EIYVG 1082 (1444)
Q Consensus 1078 ~~y~G 1082 (1444)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 77654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=314.70 Aligned_cols=209 Identities=21% Similarity=0.323 Sum_probs=162.7
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCeecEEEECCccCCCC-----CccceEEEEcCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1444)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.+++. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 35899999999999999999999999999999999998631 01389999999886421 123569999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccccc
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1444)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1444)
++ .||+||+.+++...+... + ....++.+++.+++....+...
T Consensus 106 ~~-~tv~enl~~~~~~~~~~~------~-----------------------------~~~~~~~~l~~~~l~~~l~~~~- 148 (269)
T PRK14259 106 FP-KSIYENIAFGARINGYTG------D-----------------------------MDELVERSLRKAAVWDECKDKL- 148 (269)
T ss_pred ch-hhHHHHHhhhhhhcCCcH------H-----------------------------HHHHHHHHHHHhCCcchhhhhh-
Confidence 87 599999998754322100 0 0012344566666632111111
Q ss_pred CccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEE
Q 000524 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1444)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1444)
+..++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ + .+|+.++|+..++.+++|++++
T Consensus 149 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~-~tiiivtH~~~~~~~~~d~i~~ 225 (269)
T PRK14259 149 NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--N-FTIVIVTHNMQQAVRVSDMTAF 225 (269)
T ss_pred CCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhcCEEEE
Confidence 234457999999999999999999999999999999999999999999998742 4 4566678888899999999999
Q ss_pred EcC-----------CeEEEecChhhHH
Q 000524 398 LSD-----------GQIVYQGPRELVL 413 (1444)
Q Consensus 398 L~~-----------G~iv~~G~~~~~~ 413 (1444)
|++ |++++.|+.+++.
T Consensus 226 l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 226 FNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EeccccccccccccceEEEeCCHHHHH
Confidence 996 6789999998874
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=301.22 Aligned_cols=194 Identities=24% Similarity=0.275 Sum_probs=160.5
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
.++|+++.++ .+.+|+|+|+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEccc
Confidence 4567766653 34699999999999999999999999999999999997653 48999999987543
Q ss_pred --ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000524 928 --ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 1005 (1444)
Q Consensus 928 --~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1005 (1444)
..+++.++|++|++.+++.+|+.|++.+....+. . + ++.++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHH
Confidence 2245678999999888888999999987644331 1 1 234788999999988777654 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEE
Q 000524 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1071 (1444)
Q Consensus 1006 Rl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~l 1071 (1444)
|++||++++.+|++|+|||||+|||+.+...+++.|++++++|+|||+++|++.. ..+|+++.
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 9999999999999999999999999999999999999987789999999999852 23466553
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=303.28 Aligned_cols=197 Identities=28% Similarity=0.373 Sum_probs=164.0
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1444)
+.++|++..++ ++.+|+|+|++|++||++||+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 56788876653 2469999999999999999999999999999999999765 34799999998753
Q ss_pred cccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000524 927 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 1006 (1444)
Q Consensus 927 ~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkR 1006 (1444)
...+++.++|++|++.+++.+||.|++.+....+. .. ++.++++++.++|.+..+..+ +.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22255678999999888889999999987543321 11 124789999999987666553 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000524 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1073 (1444)
Q Consensus 1007 l~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~ 1073 (1444)
++||++|+.+|++|+|||||+|||+.+...+++.|++++++|+|||+++|++. ++. . |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~-~-~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLP-G-ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhc-c-CcEEeec
Confidence 99999999999999999999999999999999999998878999999999985 344 3 8887774
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=298.62 Aligned_cols=170 Identities=41% Similarity=0.670 Sum_probs=148.0
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCeecEEEECCccCCCCCccceEEEEcCCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL--DSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l--~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1444)
+++|+|+|+.+++|++++|+||||||||||+++|+|.+ +|. +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 45999999999999999999999999999999999999 887 9999999998765334567999999998899999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
++||+.+..++ .
T Consensus 99 ~~~~i~~~~~~--------------------------------------------------------------------~ 110 (194)
T cd03213 99 VRETLMFAAKL--------------------------------------------------------------------R 110 (194)
T ss_pred HHHHHHHHHHh--------------------------------------------------------------------c
Confidence 99999763210 0
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCc-hhHHhhcCeEEEEcCC
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPA-PETYDLFDDIILLSDG 401 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~-~~~~~~fD~vilL~~G 401 (1444)
.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++.. .+.|+|+ ++|.. .++.+.+|++++|++|
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii-~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIIC-SIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEE-EecCchHHHHHhcCEEEEEeCC
Confidence 4999999999999999999999999999999999999999999998754 3556555 55554 4788899999999999
Q ss_pred eEEEec
Q 000524 402 QIVYQG 407 (1444)
Q Consensus 402 ~iv~~G 407 (1444)
++++.|
T Consensus 189 ~i~~~~ 194 (194)
T cd03213 189 RVIYFG 194 (194)
T ss_pred EEEecC
Confidence 998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=275.64 Aligned_cols=202 Identities=29% Similarity=0.390 Sum_probs=170.5
Q ss_pred CccccceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc-------cceEEEEc
Q 000524 160 SRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYIS 232 (1444)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~ 232 (1444)
+...+.+||++|++.|++||.++|+|||||||||||-+|+|+-.|+ +|+|.+.|+++..+.. .+.+|+|+
T Consensus 18 ~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVF 94 (228)
T COG4181 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVF 94 (228)
T ss_pred CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEE
Confidence 3445688999999999999999999999999999999999999998 9999999999876542 36899999
Q ss_pred CCCCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccc
Q 000524 233 QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCA 312 (1444)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1444)
|.-.++|+||..||+...+.+++-..+ +........|+.+||.+-.
T Consensus 95 QSF~Lip~ltAlENV~lPleL~ge~~~----------------------------------~~~~~A~~lL~~vGLg~Rl 140 (228)
T COG4181 95 QSFHLIPNLTALENVALPLELRGESSA----------------------------------DSRAGAKALLEAVGLGKRL 140 (228)
T ss_pred EeeeccccchhhhhccchhhhcCCccc----------------------------------cHHHHHHHHHHHhCccccc
Confidence 999999999999999998877652211 0112345678999998766
Q ss_pred cccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhc
Q 000524 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392 (1444)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~f 392 (1444)
+- .+.+|||||+|||+||||+...|+|||-||||-.||..|..+|.+.|-.+.+.. +++++.++|+ +....-|
T Consensus 141 ~H-----yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~-G~TlVlVTHD-~~LA~Rc 213 (228)
T COG4181 141 TH-----YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRER-GTTLVLVTHD-PQLAARC 213 (228)
T ss_pred cc-----CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhc-CceEEEEeCC-HHHHHhh
Confidence 54 345799999999999999999999999999999999999999999998887654 5555556665 4577889
Q ss_pred CeEEEEcCCeEEE
Q 000524 393 DDIILLSDGQIVY 405 (1444)
Q Consensus 393 D~vilL~~G~iv~ 405 (1444)
||++-|.+|+++.
T Consensus 214 ~R~~r~~~G~l~~ 226 (228)
T COG4181 214 DRQLRLRSGRLVE 226 (228)
T ss_pred hheeeeecceecc
Confidence 9999999999974
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=292.91 Aligned_cols=209 Identities=22% Similarity=0.355 Sum_probs=184.3
Q ss_pred ccceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCccceEEEEcCCCCCCCCCC
Q 000524 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1444)
.++++++|+||.++||+|++++|||||||||.+++|+|.++|+ +|+|+++|.+++... +.+|||+|.+--+++.+|
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~t 88 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEERGLYPKMT 88 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhhccCccCc
Confidence 4578999999999999999999999999999999999999998 999999999887543 356999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
|.|.|.|-++++|+... +.....+++|+.+++....... +.
T Consensus 89 v~dql~yla~LkGm~~~----------------------------------e~~~~~~~wLer~~i~~~~~~k-----Ik 129 (300)
T COG4152 89 VEDQLKYLAELKGMPKA----------------------------------EIQKKLQAWLERLEIVGKKTKK-----IK 129 (300)
T ss_pred HHHHHHHHHHhcCCcHH----------------------------------HHHHHHHHHHHhccccccccch-----HH
Confidence 99999999999986421 1233467899999998766544 45
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
.||-|.+|++-+-.+++++|++++||||+|||||-.+..+-+.+.++.. .+++|+..+|.++.+.++||+|++|++|+
T Consensus 130 ~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~--~GatIifSsH~Me~vEeLCD~llmL~kG~ 207 (300)
T COG4152 130 ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE--EGATIIFSSHRMEHVEELCDRLLMLKKGQ 207 (300)
T ss_pred HhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh--cCCEEEEecchHHHHHHHhhhhheecCCc
Confidence 7999999999999999999999999999999999999999999998864 35566667888999999999999999999
Q ss_pred EEEecChhhHHHHH
Q 000524 403 IVYQGPRELVLEFF 416 (1444)
Q Consensus 403 iv~~G~~~~~~~~F 416 (1444)
.|.+|+.+++..-|
T Consensus 208 ~V~~G~v~~ir~~~ 221 (300)
T COG4152 208 TVLYGTVEDIRRSF 221 (300)
T ss_pred eEEeccHHHHHHhc
Confidence 99999999998744
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=310.76 Aligned_cols=212 Identities=19% Similarity=0.273 Sum_probs=167.1
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC---ccceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---PERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 241 (1444)
+.+|+|+|+.+++|++++|+||||||||||+++|+|.++|....+|+|+++|+++.+.. .++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 35899999999999999999999999999999999997531113899999999886542 2457999999988887 6
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1444)
||+||+.++.+.++.... . ......++.+++.+||........ +...
T Consensus 94 tv~eni~~~~~~~~~~~~-------------------~-------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 140 (246)
T PRK14269 94 SIYENISYAPKLHGMIKN-------------------K-------------DEEEALVVDCLQKVGLFEEVKDKL-KQNA 140 (246)
T ss_pred cHHHHhhhHHhhcCcccC-------------------h-------------HHHHHHHHHHHHHcCCChhhhHHh-cCCc
Confidence 999999986533211000 0 001123466788889853211111 2345
Q ss_pred cccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCC
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1444)
+.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. .+ ++|+.++|+.+++.+.+|+|++|++|
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~tH~~~~~~~~~d~i~~l~~G 217 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS--HN-LSMIMVTHNMQQGKRVADYTAFFHLG 217 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--CC-CEEEEEecCHHHHHhhCcEEEEEECC
Confidence 6799999999999999999999999999999999999999999999874 24 45666778888899999999999999
Q ss_pred eEEEecChhhHH
Q 000524 402 QIVYQGPRELVL 413 (1444)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1444)
++++.|+.+++.
T Consensus 218 ~i~~~g~~~~~~ 229 (246)
T PRK14269 218 ELIEFGESKEFF 229 (246)
T ss_pred EEEEECCHHHHH
Confidence 999999988764
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=377.06 Aligned_cols=213 Identities=23% Similarity=0.335 Sum_probs=168.4
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC---------------------------------------
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--------------------------------------- 205 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~--------------------------------------- 205 (1444)
.++|+|+|+.|+||+.+||+||||||||||+++|+|.++|.
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999999981
Q ss_pred ------------CCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHh
Q 000524 206 ------------LKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRE 270 (1444)
Q Consensus 206 ------------~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e 270 (1444)
...+|+|++||+++.+... ++.++||+|++.+| +.||+|||.++..
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~------------------ 1321 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKE------------------ 1321 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCC------------------
Confidence 0138999999999987754 57899999998777 5799999998631
Q ss_pred hhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccccchhhhhHHHHHHHHhcCCccceeecC
Q 000524 271 NEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEI 350 (1444)
Q Consensus 271 ~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEp 350 (1444)
+.+.++..+|+...+ .++. +-.|++..||.||+.+. .||||||||++|||||+++|+||+||||
T Consensus 1322 -------~at~eeI~~A~k~A~------l~~f--I~~LP~GydT~VGe~G~-~LSGGQkQRIaIARALlr~p~ILLLDEa 1385 (1466)
T PTZ00265 1322 -------DATREDVKRACKFAA------IDEF--IESLPNKYDTNVGPYGK-SLSGGQKQRIAIARALLREPKILLLDEA 1385 (1466)
T ss_pred -------CCCHHHHHHHHHHcC------CHHH--HHhCccccCCccCCCCC-cCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 001111111111111 1111 22588899999997654 6999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcC----CeEE-EecChhhHHH
Q 000524 351 STGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD----GQIV-YQGPRELVLE 414 (1444)
Q Consensus 351 tsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~----G~iv-~~G~~~~~~~ 414 (1444)
||+||+.+...|.+.|+++....++|+|+ +.|.. ++.+.+|+|++|++ |+++ ++|+++++++
T Consensus 1386 TSaLD~~sE~~I~~~L~~~~~~~~~TvIi-IaHRl-sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1386 TSSLDSNSEKLIEKTIVDIKDKADKTIIT-IAHRI-ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred ccccCHHHHHHHHHHHHHHhccCCCEEEE-EechH-HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 99999999999999999864223556666 55544 56678999999999 9955 8999999863
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=312.92 Aligned_cols=209 Identities=25% Similarity=0.340 Sum_probs=163.0
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
+++|+++.++. .++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhhh
Confidence 56777766531 113589999999999999999999999999999999998653 48999999976532
Q ss_pred ---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCcccccccccCCCCC
Q 000524 928 ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRK-----MFIEEVMELV--ELKPLIQSLVGLPGVS 997 (1444)
Q Consensus 928 ---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~vg~~~~~ 997 (1444)
...++.++|++|++.+++ .||+||+.+.... ....... ..+++.++.+ ++.+..+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~ 137 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GV 137 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CC
Confidence 234567899999988776 6999999764321 1111100 1133444444 444443332 46
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
.||+|||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++. +|+|||+++|++. ++ ..||++++|++ |+
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~ 213 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TI-ENADRIVVLED-GK 213 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEecC-Ce
Confidence 799999999999999999999999999999999999999999999986 4899999999986 45 45999999986 78
Q ss_pred EEEEcCC
Q 000524 1078 EIYVGPL 1084 (1444)
Q Consensus 1078 ~~y~G~~ 1084 (1444)
+++.|+.
T Consensus 214 i~~~~~~ 220 (234)
T cd03251 214 IVERGTH 220 (234)
T ss_pred EeeeCCH
Confidence 8888764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=311.88 Aligned_cols=212 Identities=20% Similarity=0.306 Sum_probs=166.6
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCeecEEEECCccCCCCC-----ccceEEEEcCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEFV-----PERTAAYISQHDNH 237 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1444)
+++|+|+|+.+++|++++|+||||||||||+++|+|..+ |....+|+|+++|+++.+.. .++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 469999999999999999999999999999999999976 21123899999998865321 24579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccccc
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1444)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1444)
++. ||+||+.+.....+..... .+.+..++.+++.+||.+...+.+
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 143 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKNK--------------------------------KKLDEIVEKSLTSVGLWEELGDRL- 143 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCCH--------------------------------HHHHHHHHHHHHHcCCCchhhhHh-
Confidence 875 9999998864322110000 001123566788899865322222
Q ss_pred CccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEE
Q 000524 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1444)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1444)
+...+.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++. .+ .+|+.++|...++.+.+|+|++
T Consensus 144 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiiisH~~~~~~~~~d~i~~ 220 (251)
T PRK14244 144 KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--KN-FTIIVVTHSMKQAKKVSDRVAF 220 (251)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHhhcCEEEE
Confidence 23456799999999999999999999999999999999999999999999874 24 4555577888888999999999
Q ss_pred EcCCeEEEecChhhHH
Q 000524 398 LSDGQIVYQGPRELVL 413 (1444)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1444)
|++|++++.|+.+++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 221 FQSGRIVEYNTTQEIF 236 (251)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999987764
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=310.89 Aligned_cols=211 Identities=21% Similarity=0.345 Sum_probs=165.9
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCeecEEEECCccCCCC-----CccceEEEEcCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS--SLKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~--~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1444)
..+|+|+|+.+++||+++|+|||||||||||++|+|.++| ....+|+|.++|.++... ..++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 3589999999999999999999999999999999999874 111389999999887532 124679999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccccc
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1444)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1444)
++ +||+||+.++....+.... + ..+..+++.++.+|+....+.. .
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~-~ 140 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKSK-----H----------------------------KLDRIVEESLKKAALWDEVKSE-L 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH-----H----------------------------HHHHHHHHHHHHcCCCchhHHH-H
Confidence 77 8999999986532211000 0 0112245567777775321111 2
Q ss_pred CccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEE
Q 000524 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1444)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1444)
+..++.||||||||++||+||+.+|++++|||||+|||..+...+.+.|+++.. + ++|+.++|+.+++.+++|+|++
T Consensus 141 ~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tili~sH~~~~~~~~~d~i~~ 217 (250)
T PRK14262 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--N-YTIVIVTHNIGQAIRIADYIAF 217 (250)
T ss_pred hCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--C-cEEEEEeCCHHHHHHhCCEEEE
Confidence 344568999999999999999999999999999999999999999999998753 4 4555577878888999999999
Q ss_pred EcCCeEEEecChhhHH
Q 000524 398 LSDGQIVYQGPRELVL 413 (1444)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1444)
|++|+++..|+.+++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 218 MYRGELIEYGPTREIV 233 (250)
T ss_pred EECCEEEEecCHHHHH
Confidence 9999999999988764
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=296.29 Aligned_cols=170 Identities=28% Similarity=0.414 Sum_probs=148.8
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (178)
T cd03229 2 ELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLTD 66 (178)
T ss_pred EEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccc
Confidence 4677776653 24699999999999999999999999999999999997653 48999999987542
Q ss_pred -----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000524 928 -----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 1002 (1444)
Q Consensus 928 -----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1002 (1444)
..+++.++|++|++..++..|++|++.+. ||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 23456799999999888889999987532 8999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecC
Q 000524 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1075 (1444)
Q Consensus 1003 qrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~v~ll~~g 1075 (1444)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++|
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 999999999999999999999999999999999999999999877 899999999985 576789999999864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=313.08 Aligned_cols=210 Identities=29% Similarity=0.419 Sum_probs=162.4
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
+++|+++.++.. +++.+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~~~----------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPSR----------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCCC----------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhh
Confidence 467777665310 12359999999999999999999999999999999999865 348999999987532
Q ss_pred ---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccc-------ccCCCCC
Q 000524 928 ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-------VGLPGVS 997 (1444)
Q Consensus 928 ---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------vg~~~~~ 997 (1444)
...++.++|++|++.+++ .||+|++.+....+ ..+ .+++.++..++.+..+.+ .. ....
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 138 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDE----EVEEAAKKANIHDFIMSLPDGYDTLVG-ERGS 138 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHH----HHHHHHHHcChHHHHHhhccccceeec-cCCc
Confidence 223456999999987776 69999997642111 111 123334444443322221 11 1246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcE
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 998 ~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~ 1077 (1444)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|++. ++ +.||++++|++ |+
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~ 214 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQ 214 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CE
Confidence 899999999999999999999999999999999999999999999986 7899999999986 45 48999999986 78
Q ss_pred EEEEcCC
Q 000524 1078 EIYVGPL 1084 (1444)
Q Consensus 1078 ~~y~G~~ 1084 (1444)
+++.|+.
T Consensus 215 i~~~~~~ 221 (238)
T cd03249 215 VVEQGTH 221 (238)
T ss_pred EEEeCCH
Confidence 9998874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=361.03 Aligned_cols=207 Identities=26% Similarity=0.364 Sum_probs=166.1
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1444)
++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|++||+++.+... ++.++||+|++.+|+ .|
T Consensus 488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gT 563 (708)
T TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS-GS 563 (708)
T ss_pred cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehh-HH
Confidence 5899999999999999999999999999999999999998 9999999999877654 578999999987775 59
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
|+|||.++.+- +.+.++..+++...+ .++.++ .++...||.||+.+ .
T Consensus 564 I~eNi~l~~~~------------------------~~~~~~i~~a~~~a~------l~~~i~--~lp~gldt~i~e~G-~ 610 (708)
T TIGR01193 564 ILENLLLGAKE------------------------NVSQDEIWAACEIAE------IKDDIE--NMPLGYQTELSEEG-S 610 (708)
T ss_pred HHHHHhccCCC------------------------CCCHHHHHHHHHHhC------CHHHHH--hcccccCcEecCCC-C
Confidence 99999986311 001111111111110 111222 36677899999754 5
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEcCCe
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1444)
+||||||||++||||++++|++|+||||||+||+.+...+.+.|+++ .++|+|+ ++|.. ++.+.+|+|++|++|+
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~Ii-itHr~-~~~~~~D~i~~l~~G~ 685 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIF-VAHRL-SVAKQSDKIIVLDHGK 685 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEE-Eecch-HHHHcCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999873 3456555 55544 4568899999999999
Q ss_pred EEEecChhhHHH
Q 000524 403 IVYQGPRELVLE 414 (1444)
Q Consensus 403 iv~~G~~~~~~~ 414 (1444)
+++.|+++++++
T Consensus 686 i~~~G~~~~L~~ 697 (708)
T TIGR01193 686 IIEQGSHDELLD 697 (708)
T ss_pred EEEECCHHHHHh
Confidence 999999998865
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=306.68 Aligned_cols=194 Identities=20% Similarity=0.292 Sum_probs=164.7
Q ss_pred CceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEEecCCCCCCCCcH
Q 000524 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTV 949 (1444)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv 949 (1444)
..+.+|+++|+.++|||+++|+||||||||||+++|+|...+ .+|+|.++|. .+++.|+....+.+|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G~I~~~g~----------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVGKVDRNGE----------VSVIAISAGLSGQLTG 102 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCE----------EeEEecccCCCCCCcH
Confidence 446799999999999999999999999999999999998653 4799999984 3566777667778999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000524 950 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1444)
Q Consensus 950 ~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgL 1029 (1444)
.|++.+..... ....+.....++++++.+++.+..+.. ++.||||||||++||++|+.+|++|+|||||+||
T Consensus 103 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 103 IENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VKKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 99998764432 123344445677889999998877665 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCcEEEEEcCCC
Q 000524 1030 DARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1085 (1444)
Q Consensus 1030 D~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg~~~y~G~~~ 1085 (1444)
|+.+...+.+.|+++.+.|+|||+++|++. ++.+.+|++++|++ |++++.|+..
T Consensus 175 D~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~ 228 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GKLKDYGELD 228 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999777999999999985 57788999999985 7999998863
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=311.09 Aligned_cols=211 Identities=25% Similarity=0.379 Sum_probs=167.0
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1444)
.++++|+++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYDE------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeH
Confidence 3678888877631 23589999999999999999999999999999999998653 479999999875
Q ss_pred Cc---ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-c-----CCCC
Q 000524 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV-G-----LPGV 996 (1444)
Q Consensus 926 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v-g-----~~~~ 996 (1444)
.. ..+++.++|++|++.+++. |++|++.+... ... ...+++.++.+++.+..+.+. | ...+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NAT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 42 2345678999999887775 99999976421 111 122455566666654443321 1 1124
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCc
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 997 ~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~~gg 1076 (1444)
..||||||||++||++|+.+|++|+|||||+|||+.+...+++.|+++. +|+|||+++|++. ++ +.+|++++|++ |
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g 213 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-G 213 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-C
Confidence 6899999999999999999999999999999999999999999999985 5899999999986 34 56999999985 7
Q ss_pred EEEEEcCC
Q 000524 1077 QEIYVGPL 1084 (1444)
Q Consensus 1077 ~~~y~G~~ 1084 (1444)
++++.|+.
T Consensus 214 ~~~~~~~~ 221 (229)
T cd03254 214 KIIEEGTH 221 (229)
T ss_pred eEEEeCCH
Confidence 88888764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=313.02 Aligned_cols=213 Identities=29% Similarity=0.393 Sum_probs=168.6
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-----CCeecEEEECCccCCCCCc---cceEEEEcCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS-----LKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN 236 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~-----~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~ 236 (1444)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ ...+|+|.++|+++..... ++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 35999999999999999999999999999999999999874 1137999999998764332 346899999987
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccc
Q 000524 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1444)
.++.+||+||+.++...... .. +..+ .+....++.+++.+||++..++.
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~--~~-------------~~~~---------------~~~~~~~~~~l~~~~l~~~~~~~- 142 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHAR--RA-------------GALT---------------HRDGEIAWQALALAGATALVGRD- 142 (272)
T ss_pred CCCCCcHHHHHhhccccccc--cc-------------ccCC---------------HHHHHHHHHHHHHcCcHhhhcCC-
Confidence 66779999999875311000 00 0000 00112356788999998665544
Q ss_pred cCccccccchhhhhHHHHHHHHh---------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchh
Q 000524 317 GDEMIRGISGGERKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPE 387 (1444)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~---------~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~ 387 (1444)
+..|||||||||+||++|+ .+|++|+|||||+|||+.+...+.+.|+++.+..+ ++|+.++|...+
T Consensus 143 ----~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tviiisH~~~~ 217 (272)
T PRK13547 143 ----VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN-LGVLAIVHDPNL 217 (272)
T ss_pred ----cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHH
Confidence 4479999999999999999 59999999999999999999999999999865334 445557788888
Q ss_pred HHhhcCeEEEEcCCeEEEecChhhHH
Q 000524 388 TYDLFDDIILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 388 ~~~~fD~vilL~~G~iv~~G~~~~~~ 413 (1444)
+.+++|++++|++|++++.|+.+++.
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHHc
Confidence 88999999999999999999987763
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=311.66 Aligned_cols=210 Identities=20% Similarity=0.273 Sum_probs=167.5
Q ss_pred cceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCeecEEEECCccCCCC-----CccceEEEEcCCCC
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEF-----VPERTAAYISQHDN 236 (1444)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~ 236 (1444)
++.+|+|+|+.++||++++|+||||||||||+++|+|.++|. ...+|+|+++|+++... ..++.++|++|++.
T Consensus 20 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 99 (261)
T PRK14263 20 NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN 99 (261)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc
Confidence 356999999999999999999999999999999999999761 01389999999987532 12456999999987
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccc
Q 000524 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1444)
++ .+|++||+.++....+.. . +....++.+++.+||.+..+...
T Consensus 100 ~~-~~tv~enl~~~~~~~~~~------~-----------------------------~~~~~~~~~l~~~~l~~~i~~~~ 143 (261)
T PRK14263 100 PF-SMSIFDNVAFGLRLNRYK------G-----------------------------DLGDRVKHALQGAALWDEVKDKL 143 (261)
T ss_pred cc-cccHHHHHHHHHhhcCch------H-----------------------------HHHHHHHHHHHHcCCchhhhhhh
Confidence 77 599999999875432100 0 00123456677888754322222
Q ss_pred cCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEE
Q 000524 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1444)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1444)
+...+.||||||||++|||||+.+|++++|||||+|||+.+..++.+.|+++. .+ ++++.++|+..++.+++|+|+
T Consensus 144 -~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~--~~-~tii~isH~~~~i~~~~d~v~ 219 (261)
T PRK14263 144 -KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK--KD-YTIALVTHNMQQAIRVADTTA 219 (261)
T ss_pred -hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHHhCCEEE
Confidence 23456799999999999999999999999999999999999999999999874 23 456667888888999999999
Q ss_pred EEc--------CCeEEEecChhhHH
Q 000524 397 LLS--------DGQIVYQGPRELVL 413 (1444)
Q Consensus 397 lL~--------~G~iv~~G~~~~~~ 413 (1444)
+|+ +|++++.|+.+++.
T Consensus 220 ~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 220 FFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EEecccccccCCceEEEeCCHHHHH
Confidence 996 89999999988764
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=317.86 Aligned_cols=232 Identities=27% Similarity=0.412 Sum_probs=192.4
Q ss_pred cCcccCCCCceeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEE
Q 000524 836 RGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIT 915 (1444)
Q Consensus 836 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~ 915 (1444)
..|.+|.+...++.+++.+.. +. .++.+|+|+||.+.|||.+||+||||||||||.++|.|-.. +..
T Consensus 324 ~~m~LP~P~g~L~Ve~l~~~P---Pg--------~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~~ 390 (580)
T COG4618 324 ERMPLPAPQGALSVERLTAAP---PG--------QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTS 390 (580)
T ss_pred CCCCCCCCCceeeEeeeeecC---CC--------CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cCC
Confidence 457788878889999998843 21 34689999999999999999999999999999999999765 358
Q ss_pred EEEEEcCccCCcc---cccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHHcCCcccc
Q 000524 916 GNITISGYPKKQE---TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSET-----RKMFIEEVMELVELKPLI 987 (1444)
Q Consensus 916 G~i~i~g~~~~~~---~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~-----~~~~v~~~l~~l~L~~~~ 987 (1444)
|.|++||.+.++. .+-+.+||.||+-.+++ -||.||+. |...+.+.+. +...|+|++ +.+.+-.
T Consensus 391 G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa-----Rf~~~~d~~kIieAA~lAgvHelI--l~lP~GY 462 (580)
T COG4618 391 GSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA-----RFGEEADPEKVIEAARLAGVHELI--LRLPQGY 462 (580)
T ss_pred CcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH-----hccccCCHHHHHHHHHHcChHHHH--HhCcCCc
Confidence 9999999987663 46688999999999886 69999994 3333333332 112233332 4677788
Q ss_pred cccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcc
Q 000524 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFD 1067 (1444)
Q Consensus 988 ~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD 1067 (1444)
||.+|..+ .+||||||||+++||||-.+|.+++||||-|+||.+.+..+.++|..+.++|+|+|+++|.|+ +...+|
T Consensus 463 dT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~D 539 (580)
T COG4618 463 DTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVD 539 (580)
T ss_pred cCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcc
Confidence 99999754 689999999999999999999999999999999999999999999999989999999999996 788999
Q ss_pred eEEEEecCcEEEEEcCCCcchhHHHHHHH
Q 000524 1068 ELFLMKRGGQEIYVGPLGRHSCQLISYFE 1096 (1444)
Q Consensus 1068 ~v~ll~~gg~~~y~G~~~~~~~~~~~yF~ 1096 (1444)
+|++|+ +|++--|||. ++++.-..
T Consensus 540 kilvl~-~G~~~~FG~r----~eVLa~~~ 563 (580)
T COG4618 540 KILVLQ-DGRIAAFGPR----EEVLAKVL 563 (580)
T ss_pred eeeeec-CChHHhcCCH----HHHHHHhc
Confidence 999998 5899999997 45555543
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=312.85 Aligned_cols=211 Identities=24% Similarity=0.327 Sum_probs=167.9
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCeecEEEECCccCCCCC----ccceEEEEcCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEFV----PERTAAYISQHDNHI 238 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~ 238 (1444)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|. ...+|+|.++|+++.+.. .++.++|++|++.++
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 45899999999999999999999999999999999998751 013899999998876432 246799999998878
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+ +||+||+.++......... .+....++.+++.+||.+..++.. +
T Consensus 114 ~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~l-~ 158 (276)
T PRK14271 114 P-MSIMDNVLAGVRAHKLVPR---------------------------------KEFRGVAQARLTEVGLWDAVKDRL-S 158 (276)
T ss_pred C-ccHHHHHHHHHHhccCCCH---------------------------------HHHHHHHHHHHHHcCCCchhhhHh-h
Confidence 7 8999999876432110000 001123456678888865332222 2
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
..++.|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++.. + ++|+.++|+.+++.+++|++++|
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~dri~~l 235 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAARISDRAALF 235 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998753 3 45566788888999999999999
Q ss_pred cCCeEEEecChhhHH
Q 000524 399 SDGQIVYQGPRELVL 413 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1444)
++|++++.|+.+++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 236 FDGRLVEEGPTEQLF 250 (276)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988774
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=309.95 Aligned_cols=210 Identities=22% Similarity=0.352 Sum_probs=163.8
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCeecEEEECCccCCCC-----CccceEEEEcCCCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS--SLKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNHI 238 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~--~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1444)
++|+|+|+++++||+++|+|||||||||||++|+|.+++ ....+|+|.++|+++.+. ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 589999999999999999999999999999999998753 112389999999987531 1245799999998878
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+ +||+||+.++....+.... .+....++.+++.+++.+...... +
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~-~ 141 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK---------------------------------KKLDEIVEKSLKGAALWDEVKDRL-K 141 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhHHHH-h
Confidence 7 8999999986543221000 001123455566777642111111 2
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. .+. +|+.++|+.+++.+.+|+|++|
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~-tiii~sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 142 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK--KDY-TIVIVTHNMQQASRISDKTAFF 218 (250)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCC-eEEEEEeCHHHHHhhCCEEEEE
Confidence 3345799999999999999999999999999999999999999999999874 244 4555777888899999999999
Q ss_pred cCCeEEEecChhhHH
Q 000524 399 SDGQIVYQGPRELVL 413 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1444)
++|++++.|+.+++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 219 LNGEIVEFGDTVDLF 233 (250)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=309.84 Aligned_cols=208 Identities=23% Similarity=0.347 Sum_probs=164.5
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CeecEEEECCccCCCC-----CccceEEEEcCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1444)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 459999999999999999999999999999999999987631 1379999999887532 124579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCc----cccc
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE----VCAD 313 (1444)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 313 (1444)
++.+|+.||+.++....+.... + +....++..++.+++. +..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRDR-D--------------------------------HLMEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCCH-H--------------------------------HHHHHHHHHHHHcCcchhhhhhhc
Confidence 9999999999876432211000 0 0011233445555543 2233
Q ss_pred ccccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcC
Q 000524 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393 (1444)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD 393 (1444)
+ .++.||||||||++||++|+.+|++++|||||+|||..+...+.+.|+++++ + ++|+.++|+..++.+.+|
T Consensus 144 ~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d 215 (252)
T PRK14272 144 T-----PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--V-TTIIIVTHNMHQAARVSD 215 (252)
T ss_pred C-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHHhCC
Confidence 3 3457999999999999999999999999999999999999999999998752 4 555667788888999999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 000524 394 DIILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1444)
+|++|++|++++.|+.+++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 216 TTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=302.47 Aligned_cols=196 Identities=28% Similarity=0.395 Sum_probs=160.9
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc------cceEEEEcCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1444)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++....+ ++.++|++|++.++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 56999999999999999999999999999999999999987 9999999998754322 35799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+.+|+.||+.++........ . .+....++++++.+||.+..+..+
T Consensus 95 ~~~t~~~n~~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 139 (220)
T TIGR02982 95 GFLTARQNVQMALELQPNLS---------Y------------------------QEARERARAMLEAVGLGDHLDYYP-- 139 (220)
T ss_pred CCCCHHHHHHHHHHhccCCC---------H------------------------HHHHHHHHHHHHHcCChhhhhcCh--
Confidence 98999999998653221000 0 001124567889999987666544
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++....++|+|+ ++|... +.+.+|+|++|
T Consensus 140 ---~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~-~sh~~~-~~~~~d~v~~l 214 (220)
T TIGR02982 140 ---HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILI-VTHDNR-ILDVADRIVHM 214 (220)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEE-EeCCHH-HHhhCCEEEEE
Confidence 5799999999999999999999999999999999999999999999986534555555 555554 56899999999
Q ss_pred cCCeE
Q 000524 399 SDGQI 403 (1444)
Q Consensus 399 ~~G~i 403 (1444)
++|++
T Consensus 215 ~~g~~ 219 (220)
T TIGR02982 215 EDGKL 219 (220)
T ss_pred ECCEE
Confidence 99986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=315.23 Aligned_cols=221 Identities=23% Similarity=0.298 Sum_probs=175.6
Q ss_pred eeEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCC---ceEEEEEEEcC
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITISG 922 (1444)
Q Consensus 846 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 922 (1444)
.+.++|+++.+. .+.+|+++|++|++||+++|+|+|||||||||++|+|.... .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588999988763 24699999999999999999999999999999999997532 13589999999
Q ss_pred ccCCc-----ccccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCC---------CC-CHHHHHHHHHHHHHHcCCcccc
Q 000524 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP---------EV-DSETRKMFIEEVMELVELKPLI 987 (1444)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~---------~~-~~~~~~~~v~~~l~~l~L~~~~ 987 (1444)
.++.. ...++.++|++|+..+++ .||+||+.+....+... .. ..+..++.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87542 123567999999988777 59999999864322100 01 1122345688999999885422
Q ss_pred cccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcc
Q 000524 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFD 1067 (1444)
Q Consensus 988 ~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD 1067 (1444)
..... ..+..||||||||++||++|+.+|+||||||||+|||+.++..+++.|+++++ +.|||+++|+++ .+.+.+|
T Consensus 191 ~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 22221 22468999999999999999999999999999999999999999999999976 589999999986 5778899
Q ss_pred eEE-EEecCcEEEEEcCC
Q 000524 1068 ELF-LMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1068 ~v~-ll~~gg~~~y~G~~ 1084 (1444)
+++ +|++ |++++.|+.
T Consensus 268 ~i~~~l~~-G~i~~~g~~ 284 (305)
T PRK14264 268 QTAVFLTG-GELVEYDDT 284 (305)
T ss_pred EEEEEecC-CEEEEeCCH
Confidence 974 6675 899999985
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=303.30 Aligned_cols=210 Identities=23% Similarity=0.277 Sum_probs=166.3
Q ss_pred eEEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEc--Cc-
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITIS--GY- 923 (1444)
Q Consensus 847 ~~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~--g~- 923 (1444)
+.++|+++.++.... ...++.+|+|+|++|++||+++|+|+||||||||+++|+|...+ ..|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCc
Confidence 567888877642100 00124699999999999999999999999999999999998653 47999998 42
Q ss_pred -cCCc---cc----ccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCC
Q 000524 924 -PKKQ---ET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSLVGLP 994 (1444)
Q Consensus 924 -~~~~---~~----~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~ 994 (1444)
+... .. .++.++|++|++.+++.+||.|++.+..... ....+...+.+.++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 3221 11 1346899999998899999999998764332 12233344567889999999763 3443
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000524 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1073 (1444)
Q Consensus 995 ~~~~lSgGqrkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~v~ll~ 1073 (1444)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+.+|+++.+.
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 4679999999999999999999999999999999999999999999999877999999999964 4567899998774
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=346.91 Aligned_cols=207 Identities=25% Similarity=0.303 Sum_probs=173.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCC------ccceEEEEcCCC--C
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV------PERTAAYISQHD--N 236 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~ 236 (1444)
+.+|+|||+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++ .
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~ 413 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYAS 413 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhh
Confidence 46999999999999999999999999999999999999987 999999999876442 135799999987 5
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCc-cccccc
Q 000524 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTM 315 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1444)
+++.+||.|++.+.....+...+ .+...+++++|+.+||+ ...+..
T Consensus 414 l~~~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~L~~~gL~~~~~~~~ 460 (623)
T PRK10261 414 LDPRQTVGDSIMEPLRVHGLLPG---------------------------------KAAAARVAWLLERVGLLPEHAWRY 460 (623)
T ss_pred cCCCCCHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCCHHHhhCC
Confidence 88999999999886543211000 00123456789999996 455655
Q ss_pred ccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeE
Q 000524 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1444)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1444)
+ ..|||||||||+||+||+.+|++|||||||+|||..++.++.+.|+++.+.. +.+|+.++|+...+.+++|+|
T Consensus 461 ~-----~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~-g~tvi~isHdl~~v~~~~dri 534 (623)
T PRK10261 461 P-----HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDF-GIAYLFISHDMAVVERISHRV 534 (623)
T ss_pred c-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEE
Confidence 4 4799999999999999999999999999999999999999999999987543 455666889999999999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 000524 396 ILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1444)
++|++|++++.|+.+++.
T Consensus 535 ~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 535 AVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred EEEECCEEEEecCHHHHh
Confidence 999999999999998874
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=309.10 Aligned_cols=201 Identities=26% Similarity=0.387 Sum_probs=166.5
Q ss_pred EeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCCCH
Q 000524 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMTV 243 (1444)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 243 (1444)
+|+|+|+.+++|++++|+||||||||||+++|+|.++ . +|+|.++|+++....+ ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999999999999999999999999999984 3 8999999998765433 2468999999888888999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1444)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1444)
+||+.+..... . .. .+....++++++.+||++..++.+ +.
T Consensus 87 ~~nl~~~~~~~-~-~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (248)
T PRK03695 87 FQYLTLHQPDK-T-RT---------------------------------EAVASALNEVAEALGLDDKLGRSV-----NQ 126 (248)
T ss_pred HHHHHhcCccC-C-Cc---------------------------------HHHHHHHHHHHHHcCCHhHhcCCc-----cc
Confidence 99998753210 0 00 001123567889999987666554 46
Q ss_pred cchhhhhHHHHHHHHhc-------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEE
Q 000524 324 ISGGERKRVTTGEMMVG-------PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1444)
Q Consensus 324 LSGGqrqRvsia~al~~-------~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1444)
||||||||++||+||+. +|++++|||||+|||+.++..+.+.|++++. . +++|+.++|+..++.+++|+++
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-Q-GIAVVMSSHDLNHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999997 6799999999999999999999999998864 3 4456667888888999999999
Q ss_pred EEcCCeEEEecChhhHH
Q 000524 397 LLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1444)
+|++|++++.|+.+++.
T Consensus 205 ~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 205 LLKQGKLLASGRRDEVL 221 (248)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999987653
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=309.73 Aligned_cols=210 Identities=21% Similarity=0.329 Sum_probs=163.8
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCeecEEEECCccCCC-C---CccceEEEEcCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGE-F---VPERTAAYISQHDNHI 238 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~-~---~~~~~~~yv~Q~d~~~ 238 (1444)
+.+|+|+|+.+++|++++|+||||||||||+++|+|..+|. ...+|+|.++|.++.. . ..++.++|++|++.++
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 45899999999999999999999999999999999998752 0138999999988742 1 1245799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000524 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1444)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1444)
+ .||+||+.++....+.... + .....++..++.+|+.+...... +
T Consensus 96 ~-~tv~~~l~~~~~~~~~~~~-----~----------------------------~~~~~~~~~~~~~~l~~~~~~~~-~ 140 (249)
T PRK14253 96 P-MSIYENVAYGLRAQGIKDK-----K----------------------------VLDEVVERSLRGAALWDEVKDRL-K 140 (249)
T ss_pred c-ccHHHHHHhHHHhcCCCch-----H----------------------------HHHHHHHHHHHHcCCchhhhHHh-h
Confidence 7 8999999886432211000 0 00112344566667643211111 2
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEE
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1444)
.....|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ + ++|+.++|...++.+.+|++++|
T Consensus 141 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sh~~~~~~~~~d~i~~l 217 (249)
T PRK14253 141 SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--N-YTIVIVTHSMQQARRISDRTAFF 217 (249)
T ss_pred cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEecCHHHHHHhCCEEEEE
Confidence 34457999999999999999999999999999999999999999999999753 3 45555777888899999999999
Q ss_pred cCCeEEEecChhhH
Q 000524 399 SDGQIVYQGPRELV 412 (1444)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (1444)
++|++++.|+.+++
T Consensus 218 ~~G~i~~~g~~~~~ 231 (249)
T PRK14253 218 LMGELVEHDDTQVI 231 (249)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999998765
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=296.02 Aligned_cols=169 Identities=36% Similarity=0.611 Sum_probs=145.5
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCeecEEEECCccCCCCCccceEEEEcCCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1444)
+++|+|+|+.+++|++++|+|||||||||||++|+|... |+ +|+|.++|+++. ...++.++|++|++.+++.+|
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~---~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~t 95 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLT 95 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEEECCEehH-HHhhhceEEecccCccccCCc
Confidence 469999999999999999999999999999999999863 55 999999998875 223467999999998999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1444)
|+||+.++..+ +
T Consensus 96 v~~~l~~~~~~--------------------------------------------------~------------------ 107 (192)
T cd03232 96 VREALRFSALL--------------------------------------------------R------------------ 107 (192)
T ss_pred HHHHHHHHHHH--------------------------------------------------h------------------
Confidence 99999864210 0
Q ss_pred ccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCch-hHHhhcCeEEEEcC-
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP-ETYDLFDDIILLSD- 400 (1444)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~-~~~~~fD~vilL~~- 400 (1444)
.|||||||||+||++++.+|++++|||||+|||+.++..+.+.|++++. .+.|+|+ ++|..+ ++.+.+|+|++|++
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii-vtH~~~~~~~~~~d~i~~l~~~ 185 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILC-TIHQPSASIFEKFDRLLLLKRG 185 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEE-EEcCChHHHHhhCCEEEEEcCC
Confidence 5999999999999999999999999999999999999999999998764 3555555 555555 57889999999999
Q ss_pred CeEEEec
Q 000524 401 GQIVYQG 407 (1444)
Q Consensus 401 G~iv~~G 407 (1444)
|++++.|
T Consensus 186 g~i~~~g 192 (192)
T cd03232 186 GKTVYFG 192 (192)
T ss_pred CeEEeCC
Confidence 9999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=308.33 Aligned_cols=211 Identities=18% Similarity=0.263 Sum_probs=165.3
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CeecEEEECCccCCCC-----CccceEEEEcCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1444)
+.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++||+|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP 96 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence 359999999999999999999999999999999999998741 1259999999887532 124679999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccccc
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1444)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1444)
++. ||+||+.++....+.... + +....++..++.+||.+......
T Consensus 97 ~~~-tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~l~~~~- 141 (251)
T PRK14249 97 FPK-SIFDNVAFGPRMLGTTAQ-S--------------------------------RLDEVVEKSLRQAALWDEVKDNL- 141 (251)
T ss_pred CcC-cHHHHHhhHHHhcCCChh-h--------------------------------HHHHHHHHHHHHhCCchhhhhHh-
Confidence 875 999999987543221000 0 00112344566666643211111
Q ss_pred CccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEE
Q 000524 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1444)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1444)
+.....|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. .+ .+|+.++|+..++.+.+|++++
T Consensus 142 ~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tilivsh~~~~~~~~~d~i~~ 218 (251)
T PRK14249 142 HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK--QN-YTIAIVTHNMQQAARASDWTGF 218 (251)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHhhCCEEEE
Confidence 23456799999999999999999999999999999999999999999999873 34 4556678888899999999999
Q ss_pred EcCCeEEEecChhhHH
Q 000524 398 LSDGQIVYQGPRELVL 413 (1444)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1444)
|++|++++.|+.+++.
T Consensus 219 l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 219 LLTGDLVEYGRTGEIF 234 (251)
T ss_pred EeCCeEEEeCCHHHHH
Confidence 9999999999988764
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=306.12 Aligned_cols=211 Identities=19% Similarity=0.299 Sum_probs=162.2
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCeecEEEECCccCCCC-----CccceEEEEcCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1444)
+.+|+|+|+.+++||+++|+|||||||||||++|+|..+ |+...+|+|.++|.++... ..++.++|++|++.+
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 358999999999999999999999999999999999865 3212389999999887431 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccccc
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1444)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1444)
++ .||+||+.+..+..+.... +. .+..+...++.+|+........
T Consensus 98 ~~-~tv~~nl~~~~~~~~~~~~-~~--------------------------------~~~~~~~~l~~~~l~~~i~~~~- 142 (252)
T PRK14255 98 FP-FSIYENVIYGLRLAGVKDK-AV--------------------------------LDEAVETSLKQAAIWDEVKDHL- 142 (252)
T ss_pred CC-CcHHHHHHHHHHHcCCCCH-HH--------------------------------HHHHHHHHHHHcCCccchhhHH-
Confidence 87 7999999986543221100 00 0011234455565532111111
Q ss_pred CccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEE
Q 000524 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1444)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1444)
+..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. + .+|+.++|+..++.+.+|+|++
T Consensus 143 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~ 219 (252)
T PRK14255 143 HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--Q-YTIILVTHSMHQASRISDKTAF 219 (252)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--C-CEEEEEECCHHHHHHhCCEEEE
Confidence 233457999999999999999999999999999999999999999999998753 3 4555578888889999999999
Q ss_pred EcCCeEEEecChhhHH
Q 000524 398 LSDGQIVYQGPRELVL 413 (1444)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1444)
|++|+++..|+..++.
T Consensus 220 l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 220 FLTGNLIEFADTKQMF 235 (252)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999887763
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=297.52 Aligned_cols=190 Identities=24% Similarity=0.293 Sum_probs=156.4
Q ss_pred EEeceeeeeecchhhhhccccCCceEEeeccEEEEeCCeEEEEecCCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000524 848 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 927 (1444)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1444)
+++|+++.++ ++.+|+|+|+.+++||+++|+|+||||||||+++|+|.....+..|+|.+||.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~ 68 (200)
T cd03217 2 EIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68 (200)
T ss_pred eEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc
Confidence 5677776653 246999999999999999999999999999999999974212458999999987653
Q ss_pred c---c-ccceEEEEecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000524 928 E---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 1003 (1444)
Q Consensus 928 ~---~-~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGq 1003 (1444)
. . .++.++|++|++..++..|+++++ +.. ...|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l----------------------------------~~~-----~~~LS~G~ 109 (200)
T cd03217 69 LPPEERARLGIFLAFQYPPEIPGVKNADFL----------------------------------RYV-----NEGFSGGE 109 (200)
T ss_pred CCHHHHhhCcEEEeecChhhccCccHHHHH----------------------------------hhc-----cccCCHHH
Confidence 2 1 234589999998888888887765 000 13699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHH-hcceEEEEecCcEEEEEc
Q 000524 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFD-AFDELFLMKRGGQEIYVG 1082 (1444)
Q Consensus 1004 rkRl~ia~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~-~fD~v~ll~~gg~~~y~G 1082 (1444)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+ .+|++++|++ |+++..|
T Consensus 110 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~-G~i~~~~ 187 (200)
T cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYD-GRIVKSG 187 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEEC-CEEEEEc
Confidence 99999999999999999999999999999999999999999877899999999986 4555 7999999986 7999998
Q ss_pred CCCcchhHHHHHHH
Q 000524 1083 PLGRHSCQLISYFE 1096 (1444)
Q Consensus 1083 ~~~~~~~~~~~yF~ 1096 (1444)
+. ++.++|.
T Consensus 188 ~~-----~~~~~~~ 196 (200)
T cd03217 188 DK-----ELALEIE 196 (200)
T ss_pred cH-----HHHhhhc
Confidence 63 4455553
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=308.25 Aligned_cols=206 Identities=27% Similarity=0.421 Sum_probs=158.5
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1444)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++ ..
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NR 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cc
Confidence 45899999999999999999999999999999999999987 9999999988754322 45799999998766 47
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHh--CCcccccccccCc
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLEVCADTMVGDE 319 (1444)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 319 (1444)
||+||+.+... .. .. +...+... ....+.+++.+ |++...+ .
T Consensus 91 tv~~nl~~~~~--~~-~~-~~~~~~~~---------------------------~~~~~~~l~~l~~~~~~~~~-----~ 134 (237)
T cd03252 91 SIRDNIALADP--GM-SM-ERVIEAAK---------------------------LAGAHDFISELPEGYDTIVG-----E 134 (237)
T ss_pred hHHHHhhccCC--CC-CH-HHHHHHHH---------------------------HcCcHHHHHhCcccccchhh-----c
Confidence 99999987432 10 00 00000000 00112334444 4443333 3
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeEEEEc
Q 000524 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1444)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1444)
.++.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++++ .+.| |+.++|+.+++ +.+|++++|+
T Consensus 135 ~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~t-iii~sH~~~~~-~~~d~v~~l~ 210 (237)
T cd03252 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC--AGRT-VIIIAHRLSTV-KNADRIIVME 210 (237)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCE-EEEEeCCHHHH-HhCCEEEEEE
Confidence 445799999999999999999999999999999999999999999999875 3445 55566666676 4699999999
Q ss_pred CCeEEEecChhhHHH
Q 000524 400 DGQIVYQGPRELVLE 414 (1444)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1444)
+|++++.|+.+++.+
T Consensus 211 ~G~i~~~~~~~~~~~ 225 (237)
T cd03252 211 KGRIVEQGSHDELLA 225 (237)
T ss_pred CCEEEEEcCHHHHHh
Confidence 999999999887653
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=312.07 Aligned_cols=198 Identities=23% Similarity=0.226 Sum_probs=159.5
Q ss_pred eEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc---cceEEEEcCCCCCCCCCC
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1444)
.+|+|+|+.|++||+++|+|||||||||||++|+|.++ . +|+|.++|.++..... ++.++||+|++.+++ .|
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~t 92 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GT 92 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-hh
Confidence 48999999999999999999999999999999999986 4 8999999998865432 467999999998887 59
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCc-------cccccc
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-------VCADTM 315 (1444)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-------~~~dt~ 315 (1444)
|+||+...... . .+ .+...++.+||. ...||.
T Consensus 93 v~~nl~~~~~~----~-~~------------------------------------~~~~~l~~~gL~~~~~~~p~~l~~~ 131 (275)
T cd03289 93 FRKNLDPYGKW----S-DE------------------------------------EIWKVAEEVGLKSVIEQFPGQLDFV 131 (275)
T ss_pred HHHHhhhccCC----C-HH------------------------------------HHHHHHHHcCCHHHHHhCcccccce
Confidence 99999632110 0 00 011122333333 345667
Q ss_pred ccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeE
Q 000524 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1444)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1444)
+++ ..+.||||||||++||||++.+|++++|||||++||+.+...+.+.|++.. . +++|+.++|..+.+. .+|+|
T Consensus 132 ~~~-~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~-~~tii~isH~~~~i~-~~dri 206 (275)
T cd03289 132 LVD-GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--A-DCTVILSEHRIEAML-ECQRF 206 (275)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--C-CCEEEEEECCHHHHH-hCCEE
Confidence 765 456899999999999999999999999999999999999999999999753 3 445566777776665 59999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 000524 396 ILLSDGQIVYQGPRELVLE 414 (1444)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1444)
++|++|++++.|++++++.
T Consensus 207 ~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 207 LVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEecCCeEeecCCHHHHhh
Confidence 9999999999999999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-32 Score=310.49 Aligned_cols=206 Identities=25% Similarity=0.313 Sum_probs=168.9
Q ss_pred ceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCCCc------cceEEEEcCCC--C
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHD--N 236 (1444)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d--~ 236 (1444)
+.+|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++....+ ++.++|++|++ .
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 46999999999999999999999999999999999999887 9999999998765432 45799999997 3
Q ss_pred CCCCCCHHHHHHHhhhh-cCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCc-ccccc
Q 000524 237 HIGEMTVRETLAFSARC-QGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADT 314 (1444)
Q Consensus 237 ~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (1444)
+.+..|+.|++.+.... .... . .+....++.+++.+||. ...++
T Consensus 102 ~~~~~t~~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~ 147 (268)
T PRK10419 102 VNPRKTVREIIREPLRHLLSLD----------K------------------------AERLARASEMLRAVDLDDSVLDK 147 (268)
T ss_pred cCCCCCHHHHHHHHHHhhccCC----------H------------------------HHHHHHHHHHHHHcCCChhHhhC
Confidence 56789999999764321 0000 0 00112456788899996 34554
Q ss_pred cccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCe
Q 000524 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1444)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1444)
. .+.||||||||++||++|+.+|++++|||||+|||..+...+.+.|+++++.. +++|+.++|+..++.+++|+
T Consensus 148 ~-----~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~-~~tiiivsH~~~~i~~~~d~ 221 (268)
T PRK10419 148 R-----PPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQF-GTACLFITHDLRLVERFCQR 221 (268)
T ss_pred C-----CccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHc-CcEEEEEECCHHHHHHhCCE
Confidence 3 45799999999999999999999999999999999999999999999886533 45556678888899999999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 000524 395 IILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1444)
+++|++|++++.|+.+++.
T Consensus 222 i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 222 VMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEEECCEEeeeCChhhcc
Confidence 9999999999999988764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=324.38 Aligned_cols=210 Identities=30% Similarity=0.377 Sum_probs=177.4
Q ss_pred ccceEeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCeecEEEECCccCCCC-----CccceEEEEcCCC--
Q 000524 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF-----VPERTAAYISQHD-- 235 (1444)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d-- 235 (1444)
....+++||||.+++||+++|+|+||||||||.++|+|+++|+ +|+|.++|.+.+-. ..++.+-+|+|++
T Consensus 302 ~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~ 378 (539)
T COG1123 302 GEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378 (539)
T ss_pred cceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCccc
Confidence 4567999999999999999999999999999999999999997 99999999872111 1135677888876
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCCHHHHHHHHHhhhhhhhHHHHHHHHHhCCccccccc
Q 000524 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTM 315 (1444)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1444)
.+.|.+||+++|.-......... ..+.+.+++++++..||+..
T Consensus 379 SLnPr~tV~~~i~epL~~~~~~~---------------------------------~~~~~~rv~~ll~~VgL~~~---- 421 (539)
T COG1123 379 SLNPRMTVGDILAEPLRIHGGGS---------------------------------GAERRARVAELLELVGLPPE---- 421 (539)
T ss_pred ccCccccHHHHHHhHHhhhcccc---------------------------------hHHHHHHHHHHHHHcCCCHH----
Confidence 68899999999987765443211 01123467889999999842
Q ss_pred ccCccccccchhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCchhHHhhcCeE
Q 000524 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1444)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1444)
..++.+..|||||||||+|||||+.+|+++++|||||+||++++.+|.+.|+++.++. +.+.+.|+|+..-+..+||+|
T Consensus 422 ~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~-g~t~lfISHDl~vV~~i~drv 500 (539)
T COG1123 422 FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL-GLTYLFISHDLAVVRYIADRV 500 (539)
T ss_pred HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHhhCceE
Confidence 4456778899999999999999999999999999999999999999999999987654 566777999999999999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 000524 396 ILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1444)
++|++|+||+.||.+++.
T Consensus 501 ~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 501 AVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred EEEECCeEEEeCCHHHHh
Confidence 999999999999998884
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1444 | ||||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-10 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 5e-10 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 6e-10 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 6e-10 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-09 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-09 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 4e-09 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-09 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 4e-09 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 5e-09 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-09 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-09 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 9e-09 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 9e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-07 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 8e-07 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 9e-07 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-06 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 2e-06 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-06 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-06 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-06 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 6e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 6e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 8e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 8e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 1e-05 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 1e-05 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 1e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-05 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 3e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 4e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 4e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 6e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 6e-05 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 8e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 9e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 9e-05 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-04 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-04 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-04 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 2e-04 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-04 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-04 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 5e-04 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 6e-04 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 8e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 9e-04 |
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 16/186 (8%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGY-PKKQETFA 931
L G+S G + L+G +GAGKTT + ++S + + G +T+ G ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV 86
Query: 932 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
R Y + + E L + A + E +E E+ L I+
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKIKDR 143
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 1051 VVCTIH 1056
++ + H
Sbjct: 199 ILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 8e-14
Identities = 59/259 (22%), Positives = 90/259 (34%), Gaps = 65/259 (25%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE--- 221
ILK +S I+ G + L+GP +GKTT L ++ + S SG VT G ++ E
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 84
Query: 222 -------FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
++PE AY M E L F A S E+ A
Sbjct: 85 EVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYASSSS-----EIEEMVERA- 130
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
++ GL + + S G +++
Sbjct: 131 ----------------------------TEIAGLGE-----KIKDRVSTYSKGMVRKLLI 157
Query: 335 GEMMVG-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393
++ P L +DE ++GLD ++ LKQ G ++ E L D
Sbjct: 158 ARALMVNPRL-AILDEPTSGLDVLNAREVRKILKQAS--QEGLTILVSSHNMLEVEFLCD 214
Query: 394 DIILLSDGQIVYQG-PREL 411
I L+ +G IV G EL
Sbjct: 215 RIALIHNGTIVETGTVEEL 233
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 52/220 (23%), Positives = 87/220 (39%), Gaps = 36/220 (16%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETF 930
L L+ G + A++G +G GK+TL+D+L G R G I
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------------V 64
Query: 931 ARISGYCEQNDIHSPF-VTVYESLL-----YSAWLRLPPEVDSETRKMFIEEVMELVELK 984
+ G+ Q SPF +V + +L + P D + + ++ + L
Sbjct: 65 YQSIGFVPQF-FSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV----AMQALDYLNLT 119
Query: 985 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1043
L + + LS QR+ + IA + + +I +DEPTS LD IV+ + +
Sbjct: 120 HLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDL 174
Query: 1044 TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083
TVV T HQP + ++ L+ + G
Sbjct: 175 AQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 35/254 (13%), Positives = 80/254 (31%), Gaps = 63/254 (24%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+ + ++ + G + +LG GK+TLL L G G++
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY---------- 65
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
++ ++ Q + +V + + G ++
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLM------------------------GRST------HI 95
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA- 344
A + L L L A +SGG+R+ + ++ A+A
Sbjct: 96 NTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLI-----LIARAIAS 145
Query: 345 ----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL--LQPAPETYDLFDDIILL 398
+ +DE ++ LD + +++ L + T V + + + +LL
Sbjct: 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLL 202
Query: 399 SDGQIVYQGPRELV 412
+ + R ++
Sbjct: 203 NKQNFKFGETRNIL 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 2e-22
Identities = 43/215 (20%), Positives = 79/215 (36%), Gaps = 33/215 (15%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG-RKTGGYIT-GNITISGYPKKQETFA 931
L LSG R G + L+G +GAGK+TL+ ++G G I + + + A
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--LA 72
Query: 932 RISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
Y Q PF V+ L + +E + +V + L +
Sbjct: 73 LHRAYLSQ-QQTPPFATPVWHYLTLH----QHDKTRTEL----LNDVAGALALDDKLGRS 123
Query: 991 VGLPGVSGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
+ LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 124 T-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 1044 TVDTGRTVVCTIHQPGIDIFDAF---DELFLMKRG 1075
G +V + H D+ +L+K G
Sbjct: 179 LSQQGLAIVMSSH----DLNHTLRHAHRAWLLKGG 209
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 7e-20
Identities = 52/265 (19%), Positives = 81/265 (30%), Gaps = 74/265 (27%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T L +SG ++ G + L+GP +GK+TLL +AG G + + G + +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSAT 69
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+ A AY+SQ V L +
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLTL------------------------HQHDKTRTE 105
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRV--------TT 334
+ L L+ +SGGE +RV T
Sbjct: 106 LLNDVAGA---------------LALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 145
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL--- 391
+ L L +DE LD + + L G A++ +DL
Sbjct: 146 PQANPAGQL-LLLDEPMNSLDVAQQSALDKILSALSQ--QGLAIVMSS------HDLNHT 196
Query: 392 ---FDDIILLSDGQIVYQGPRELVL 413
LL G+++ G RE VL
Sbjct: 197 LRHAHRAWLLKGGKMLASGRREEVL 221
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 2e-22
Identities = 40/205 (19%), Positives = 80/205 (39%), Gaps = 27/205 (13%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIT---GNITISGYPKKQETFA 931
L ++ G + G +G GKTTL+ +S Y+ G I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-----YLKPLKGEIIYNGVPIT-KVKG 78
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 991
+I + + I ++V + L A L + K I + +E VE+ L +
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK-- 130
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRT 1050
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 131 ----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 1051 VVCTIHQPGIDIFDAFDELFLMKRG 1075
++ + D + +
Sbjct: 187 IISSRE-----ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 5e-13
Identities = 37/249 (14%), Positives = 76/249 (30%), Gaps = 66/249 (26%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE---- 221
+L+ ++ I+ G + GP GKTTLL ++ L G + YNG + +
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGK 79
Query: 222 --FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
F+PE +++V + L A GV + +
Sbjct: 80 IFFLPEEIIVP--------RKISVEDYLKAVASLYGVKVNKNEIMDA------------- 118
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
L+ + + + +S G +RV ++
Sbjct: 119 -----------------------LESVEVLDLKKK------LGELSQGTIRRVQLASTLL 149
Query: 340 G-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398
+ +D+ +D + +++ + + + G +IS + E D L
Sbjct: 150 VNAEI-YVLDDPVVAIDEDSKHKVLKSILEILK-EKGIVIIS----SREELSYCDVNENL 203
Query: 399 SDGQIVYQG 407
Sbjct: 204 HKYSTKIDK 212
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 4e-20
Identities = 48/241 (19%), Positives = 81/241 (33%), Gaps = 34/241 (14%)
Query: 815 GRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVL 874
G N I E + + L D + P K QG +
Sbjct: 313 GINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGD-----FV 367
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
LN G F + +MG +G GKTTL+ +L+G + G + +S P+K
Sbjct: 368 LNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK------ 421
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 992
TV + F +V++ + + +I V
Sbjct: 422 -IAPKFPG-------TVRQLFFKKIR-------GQFLNPQFQTDVVKPLRIDDIIDQEV- 465
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTV 1051
LS + +R+ I + L I +DEP++ LD+ I + +R + +T
Sbjct: 466 ----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTA 521
Query: 1052 V 1052
Sbjct: 522 F 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-13
Identities = 33/184 (17%), Positives = 69/184 (37%), Gaps = 23/184 (12%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNIT------------ISGYPKKQE 928
RPG + L+G +G GK+T + +L+G + G + Y K
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 929 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 988
+ Q + P L+L E ++ +++++L+ +++
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME----KSPEDVKRYIKILQLENVLK 216
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
+ LS + +R I + V + DEP+S LD + + +R+ +
Sbjct: 217 R-----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT 271
Query: 1049 RTVV 1052
+ V+
Sbjct: 272 KYVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 45/267 (16%), Positives = 78/267 (29%), Gaps = 83/267 (31%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG--------- 216
+ +PG++ L+G GK+T L LAGK +L GR
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPEWQEIIKYF 147
Query: 217 -------HDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARR 269
+ + A Q+ ++I ++ +
Sbjct: 148 RGSELQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQKV------------------G 188
Query: 270 ENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGER 329
E + +++ Y+K+L LE V I +SGGE
Sbjct: 189 EL----------------LKLRMEKSPEDVKRYIKILQLE-----NVLKRDIEKLSGGEL 227
Query: 330 KRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI----- 379
+R +G + DE S+ LD ++ + VI
Sbjct: 228 QRF-----AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL--APTKYVICVEHD 280
Query: 380 -SLLQPAPETYDLFDDIILLSDGQIVY 405
S+L L D + ++ VY
Sbjct: 281 LSVLD------YLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 4e-09
Identities = 56/310 (18%), Positives = 93/310 (30%), Gaps = 90/310 (29%)
Query: 149 EDIFNYLGILPSRKKHL--TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
D + PS KK +L G + +++G +GKTTL+ LAG L
Sbjct: 347 NDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-- 404
Query: 207 KVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTEL 266
D G+ +P+ + Q TVR+ R + L
Sbjct: 405 -----------DEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKI-------RGQFLNP- 445
Query: 267 ARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISG 326
+ + + +K L ++ D V +SG
Sbjct: 446 -QFQTDV-----------------------------VKPLRIDDIIDQEVQH-----LSG 470
Query: 327 GERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI------S 380
GE +RV + PA +DE S LDS +++ + ++
Sbjct: 471 GELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFIL-HNKKTAFIVEHDFI 529
Query: 381 LLQPAPETYDLFDDIILLSDGQIVY---QGPRELVLEFFESMGFKCPKRKGVADFLQE-- 435
+ L D +I+ + P L G FL+
Sbjct: 530 MAT------YLADKVIVFEGIPSKNAHARAPESL--------------LTGCNRFLKNLN 569
Query: 436 VTSRKDQKQY 445
VT R+D +
Sbjct: 570 VTFRRDPNSF 579
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 2e-19
Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 32/227 (14%)
Query: 832 HPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDK---LVLLNGLSGAFRPGVLT 888
+ + F P+ + F ++ VD+ +E ++ K L G R G +
Sbjct: 326 QGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVI 385
Query: 889 ALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 946
++G +G GKTT + +L+G T G + ++T++ K Q I
Sbjct: 386 GIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ----YIK--------AEYE 431
Query: 947 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 1006
TVYE L + E+++ + + L V LS + +R
Sbjct: 432 GTVYELLSKIDS-------SKLNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQR 479
Query: 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVV 1052
+ IA L+ + I +DEP++ LD V R +R+ ++ +T +
Sbjct: 480 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-12
Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 15/189 (7%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR----KTGGYITGNITISGYPK 925
+L L + G++ ++G +G GKTT + +L+G+ + + I +
Sbjct: 103 VNAFVLYRLPI-VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161
Query: 926 K--QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL 983
Q F R+ + + +V + + L +VD + EEV++ +EL
Sbjct: 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK---FEEVVKELEL 218
Query: 984 KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
+ ++ + LS + +R+ IA L+ F DEP+S LD R V R +R
Sbjct: 219 ENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273
Query: 1044 TVDTGRTVV 1052
+ G+ V+
Sbjct: 274 LANEGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 2e-12
Identities = 61/296 (20%), Positives = 102/296 (34%), Gaps = 84/296 (28%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
+ L+ G I+ G + ++GP GKTT + LAG + + G+V ++
Sbjct: 363 LVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDL-- 417
Query: 219 MGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
T AY Q+ E TV E LL+++ + +
Sbjct: 418 --------TVAYKPQYIKAEYEGTVYE----------------LLSKIDSSKLNSNFYKT 453
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
++ LK LG+ D V D +SGGE +RV +
Sbjct: 454 ---EL-------------------LKPLGIIDLYDRNVED-----LSGGELQRVAIAATL 486
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA-VISLLQPAPETYDLF----- 392
+ A +DE S LD + ++ + N TA V+ +D+
Sbjct: 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE--------HDVLMIDYV 538
Query: 393 -DDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE--VTSRKDQKQY 445
D +I+ +G+ G L R+G+ FL +T R+D
Sbjct: 539 SDRLIVF-EGEPGRHGR---ALPPM-------GMREGMNRFLASVGITFRRDPDSG 583
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-08
Identities = 62/326 (19%), Positives = 106/326 (32%), Gaps = 89/326 (27%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+ I+K G + ++GP +GKTT + LAG+L ++ E
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLI-------------PNLCEDNDS 151
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP-DPDIDVY 284
DN I E + + E +D+
Sbjct: 152 W--------DNVIRAFRGNELQNY---------------FERLKNGEIRPVVKPQYVDLL 188
Query: 285 MKAIATEGQEANVIT--------DYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
K A +G+ ++ + +K L LE V D + +SGGE +RV
Sbjct: 189 PK--AVKGKVRELLKKVDEVGKFEEVVKELELE-----NVLDRELHQLSGGELQRV---- 237
Query: 337 MMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHI-NSGTAVI------SLLQP 384
+ AL F DE S+ LD ++ ++ + N G AV+ ++L
Sbjct: 238 -AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR---RLANEGKAVLVVEHDLAVLD- 292
Query: 385 APETYDLFDDIILLSDGQIVY------QGPRELVLEFFE----SMGFKCPKRKGVADFLQ 434
L D I ++ VY +G R + EF + + + L
Sbjct: 293 -----YLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLS 347
Query: 435 EVTSRKDQKQY-WTHKEKPYRFVTVE 459
E + + + K Y +E
Sbjct: 348 ERVDVERETLVEYPRLVKDYGSFKLE 373
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 8e-19
Identities = 47/218 (21%), Positives = 94/218 (43%), Gaps = 28/218 (12%)
Query: 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR--KTGGYITGNITISGYPKKQETF 930
+L +S G L G++GAGKTTL+++L+ T +G + + G + +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGY 90
Query: 931 ------ARISGYCEQNDIH---SPFVTVYESLL--YSAWLRLPPEVDSETRKMFIEEVME 979
I G+ + V + ++ + + ++D E R ++++
Sbjct: 91 SAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLK 147
Query: 980 LVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
LV + Q +G LST +++R+ IA L+ P ++ +DEP +GLD A ++
Sbjct: 148 LVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS 202
Query: 1040 TVR--NTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
+ + ++ H +I F ++ L+K G
Sbjct: 203 ILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDG 239
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 3e-18
Identities = 61/264 (23%), Positives = 94/264 (35%), Gaps = 63/264 (23%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
TILK +S I G +L G +GKTTLL L SG V G G+
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYS 91
Query: 226 RTAA-----YISQ--HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
++S + V + + S + +G Y+ + + R
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVI-SGAFKSIG-VYQDIDDEIR---------- 139
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
A + LK++G+ A I +S GE++RV M
Sbjct: 140 --------NEAHQ----------LLKLVGMSAKAQQY-----IGYLSTGEKQRV-----M 171
Query: 339 VGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL----LQPAPETY 389
+ AL L +DE + GLD +++ L A+I ++
Sbjct: 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMI-YVTHFIEEITA-- 228
Query: 390 DLFDDIILLSDGQIVYQGPRELVL 413
F I+LL DGQ + QG E +L
Sbjct: 229 -NFSKILLLKDGQSIQQGAVEDIL 251
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 7e-18
Identities = 56/247 (22%), Positives = 94/247 (38%), Gaps = 38/247 (15%)
Query: 822 SLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKL--------- 872
S G + +G LP E + DE+ + + ++ L L+ K+
Sbjct: 221 SKSYAARVGINNFLKGY-LPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKL 279
Query: 873 --VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQE 928
L +G + G + ++G +G GKTT +L G G +T I Y K Q
Sbjct: 280 GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQR 338
Query: 929 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 988
F + TV + +L + T F EEV + + L L++
Sbjct: 339 IFP------------NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLE 380
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
S V + LS + ++L IA L + +D+P+S LD IV + ++
Sbjct: 381 SNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRER 435
Query: 1049 RTVVCTI 1055
+ V I
Sbjct: 436 KAVTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-12
Identities = 35/184 (19%), Positives = 76/184 (41%), Gaps = 21/184 (11%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI 942
+ + ++G +G GKTT++ +L+G + N K E R G +I
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRG----KEI 74
Query: 943 HSPFVTVYESLLYSAWLRLPPEVDSETRKMF--IEEVMELVELKPLIQSLVGLPGVSG-- 998
++ F +Y + L + V+ ++ + + E++ ++ + + L ++
Sbjct: 75 YNYFKELYSNELKI--VHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLW 132
Query: 999 ------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
LS +RL +A L+ + D+P+S LD R + + +R + + V+
Sbjct: 133 NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVI 191
Query: 1053 CTIH 1056
H
Sbjct: 192 VVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 5e-10
Identities = 55/298 (18%), Positives = 92/298 (30%), Gaps = 88/298 (29%)
Query: 160 SRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM 219
+K L +G K G + +LGP GKTT L G++ + G VT +
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL 332
Query: 220 GEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
Y Q I P+
Sbjct: 333 S---------YKPQR----------------------------------------IFPNY 343
Query: 280 DIDVYM---KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
D V A ++ + K L L ++ V D +SGGE +++
Sbjct: 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAA 398
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA-VISLLQPAPETYDLF--- 392
+ A +D+ S+ LD + + +K+ +I +DL
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID--------HDLSIHD 450
Query: 393 ---DDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE--VTSRKDQKQY 445
D II+ G+ G + + G+ +FL+E VT R+D +
Sbjct: 451 YIADRIIVF-KGEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDAETG 497
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 5e-10
Identities = 49/338 (14%), Positives = 101/338 (29%), Gaps = 95/338 (28%)
Query: 168 LKDVS-GIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYN-------GHD 218
K K + +LG GKTT+L LAG++ + + +V + G +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 219 MGEFVPE-----RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA 273
+ + E + Q+ + + G+ E+LT++ R +
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASK------FLK-------GTVNEILTKIDERGKKD 120
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT 333
+K ++ + + +L SGG +R+
Sbjct: 121 EVKELLNM--------------TNLWNKDANIL------------------SGGGLQRL- 147
Query: 334 TGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI------SLL 382
+V +L D+ S+ LD + +++ + VI +L
Sbjct: 148 ----LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE---LLKNKYVIVVDHDLIVL 200
Query: 383 QPAPETYDLFDDIILLSDGQIVY----------QGPRELVLEFFESMGFKCPKRKGVADF 432
L D I ++ VY G + + + K + +
Sbjct: 201 D------YLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDE-IKFM 253
Query: 433 LQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHV 470
L+EV+ K T + + +F +
Sbjct: 254 LKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEA 291
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 7e-18
Identities = 51/234 (21%), Positives = 94/234 (40%), Gaps = 36/234 (15%)
Query: 829 QGSHPKKRGMI----LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKL---VLLNGLSGA 881
G + RG + + F P+ + F + V++ +E + K L G
Sbjct: 249 NGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGE 308
Query: 882 FRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQ 939
+ G + ++G +G GKTT + +L+G T G I ++T++ K Q I
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----YIK----- 357
Query: 940 NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 999
TVYE L + E+++ + + L V + L
Sbjct: 358 ---ADYEGTVYELLSKIDA-------SKLNSNFYKTELLKPLGIIDLYDREV-----NEL 402
Query: 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVV 1052
S + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T +
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 4e-12
Identities = 36/188 (19%), Positives = 77/188 (40%), Gaps = 38/188 (20%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLSGR----KTGGYITGNITISGYPKK--QETFARISGY 936
+ G++ ++G +G GK+T + +L+G+ G + + I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 937 CEQNDIH----SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 992
+I +V ++ + K + E+++ + ++ +V
Sbjct: 104 ---GEIRPVVKPQYV----------------DLIPKAVKGKVIELLKKADETGKLEEVVK 144
Query: 993 LPG--------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
+ LS + +R+ IA L+ N + F DEP+S LD R R +R
Sbjct: 145 ALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL 204
Query: 1045 VDTGRTVV 1052
+ G++V+
Sbjct: 205 SEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 61/310 (19%), Positives = 107/310 (34%), Gaps = 86/310 (27%)
Query: 145 TTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS 204
E + Y ++ L+ G IK G + ++GP GKTT + LAG +
Sbjct: 281 EIERETLVTYPRLVKDYGSF--RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP 338
Query: 205 SLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLT 264
+ G++ ++ T AY Q+ E TV YELL+
Sbjct: 339 T---EGKIEWDL----------TVAYKPQYIKADYEGTV----------------YELLS 369
Query: 265 ELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324
++ + + ++ LK LG+ D V + +
Sbjct: 370 KIDASKLNSNFYKT-EL---------------------LKPLGIIDLYDREVNE-----L 402
Query: 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA-VISLLQ 383
SGGE +RV ++ A +DE S LD + ++ + N TA V+
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE--- 459
Query: 384 PAPETYDLF------DDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE-- 435
+D+ D +++ +G+ G + R+G+ FL
Sbjct: 460 -----HDVLMIDYVSDRLMVF-EGEPGKYGRALPPM----------GMREGMNRFLASIG 503
Query: 436 VTSRKDQKQY 445
+T R+D
Sbjct: 504 ITFRRDPDTG 513
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 4e-07
Identities = 60/331 (18%), Positives = 100/331 (30%), Gaps = 99/331 (29%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL---KVSGRVTYNGHDMGEF 222
+ ++K G + ++GP +GK+T + LAG+L +L S E
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94
Query: 223 VPERTAAYI--------SQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
Q+ + I + G ELL +
Sbjct: 95 QNYFEKLKNGEIRPVVKPQYVDLIPKAVK-------------GKVIELLKKADETGK--- 138
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
+ +K L LE V + I+ +SGGE +RV
Sbjct: 139 ------------------------LEEVVKALELE-----NVLEREIQHLSGGELQRV-- 167
Query: 335 GEMMVGPALA-----LFMDEISTGLDSSTTFQIVN---CLKQHVHINSGTAVI------S 380
+ AL F DE S+ LD L + G +V+ +
Sbjct: 168 ---AIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE-----GKSVLVVEHDLA 219
Query: 381 LLQPAPETYDLFDDIILLSDGQIVY------QGPRELVLEFF------ESMGFKCPKRKG 428
+L L D I ++ VY +G R + EF E++ F+ P
Sbjct: 220 VLD------YLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFR-PYEIK 272
Query: 429 VADFLQEVTSRKDQKQYWTHKEKPYRFVTVE 459
+ V ++ + K Y +E
Sbjct: 273 FTKTGERVEIERETLVTYPRLVKDYGSFRLE 303
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 9e-18
Identities = 34/212 (16%), Positives = 72/212 (33%), Gaps = 43/212 (20%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLSG-RKTGGYIT-GNITISGYPKKQETFARISGYCEQND 941
G ++G +G+GKTTL+ +SG G I + + Y
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYI-------RYSTNLP 81
Query: 942 IHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG----- 995
VTV + + E+ + + + +E+++ + L
Sbjct: 82 EAYEIGVTVNDIVYL------YEEL----KGLDRDLFLEMLKA-------LKLGEEILRR 124
Query: 996 -VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1054
+ LS Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ +
Sbjct: 125 KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILV 181
Query: 1055 IHQPGIDIFDAF---DELFLMKRGGQEIYVGP 1083
H ++ + G +
Sbjct: 182 TH----ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 44/288 (15%), Positives = 88/288 (30%), Gaps = 83/288 (28%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
+ L++++ + G ++LGP SGKTTLL A++G L SG + NG +
Sbjct: 12 SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFINGME 66
Query: 219 MGEFVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
+ + Y + + + +TV + + +G+
Sbjct: 67 VRKIRNYI--RYSTNLPEAYEIGVTVNDIVYLYEELKGLD-------------------- 104
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM 337
+ + E LK L L + + +S G+ V
Sbjct: 105 --------RDLFLE----------MLKALKL----GEEILRRKLYKLSAGQSVLVR---- 138
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYD-- 390
ALA + +DE +D++ I +K+ ++ T++
Sbjct: 139 -TSLALASQPEIVGLDEPFENVDAARRHVISRYIKE-YGK---EGILV-------THELD 186
Query: 391 ----LFDDIILLSDGQIVYQG--PREL----VLEFFESMGFKCPKRKG 428
+ G + EL ++E +
Sbjct: 187 MLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGERNDALLVLDIMD 234
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 57/288 (19%), Positives = 105/288 (36%), Gaps = 74/288 (25%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
LK ++ IK G +T +LG GK+TL G L S SGR+ ++ + +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKG 78
Query: 228 AAYISQH--------DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ + DN + +V + ++F A + E+ +R + A
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE-----DEIRKRVDNA------ 127
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
LK G+E D +S G++KRV
Sbjct: 128 -----------------------LKRTGIEHLKDKPTHC-----LSFGQKKRV------- 152
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYD 390
A+A L +DE + GLD +I+ L + + G +I
Sbjct: 153 --AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGITIIIATHDIDIVPL 209
Query: 391 LFDDIILLSDGQIVYQGPRELVL---EFFESMGFKCPKRKGVADFLQE 435
D++ ++ +G+++ QG + V E + + P+ + + L+E
Sbjct: 210 YCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 38/218 (17%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYP--KKQETF 930
L G++ + G +TA++G +G GK+TL +G + + +G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 931 ARIS---GYCEQNDIHSP---FV--TVYESLLYSAW-LRLPPEVDSETRKMFIEEVMELV 981
++ G Q+ P +VY+ + + A ++LP + E RK ++ ++
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQDVSFGAVNMKLPED---EIRKR-VDNALKRT 131
Query: 982 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
++ L LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 132 GIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186
Query: 1042 RN-TVDTGRTVVCTIHQPGIDIFDAF---DELFLMKRG 1075
+ G T++ H DI D +F+MK G
Sbjct: 187 VEMQKELGITIIIATH----DIDIVPLYCDNVFVMKEG 220
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 5e-15
Identities = 49/212 (23%), Positives = 88/212 (41%), Gaps = 31/212 (14%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
L +S G + G +G+GK+TL+ +++G T +G++ G KK R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT----SGDVLYDGERKKGYEIRR 78
Query: 933 ISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPE---VDSETRKMFIEEVMELVELKPLIQ 988
G Q F V++ + ++ + D + + +++ ME V L
Sbjct: 79 NIGIAFQYPEDQFFAERVFDEVAFA------VKNFYPDRDPVPL-VKKAMEFVGLDFD-- 129
Query: 989 SLVGLPGVS--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 130 ---SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 186
Query: 1047 TGRTVVCTIHQPGIDIFDAF---DELFLMKRG 1075
G+TV+ H DI D + ++++G
Sbjct: 187 LGKTVILISH----DIETVINHVDRVVVLEKG 214
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 7e-12
Identities = 54/281 (19%), Positives = 100/281 (35%), Gaps = 77/281 (27%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
++ + P KK L++VS +I G L+ G SGK+TLL +AG ++ +
Sbjct: 5 VVNVSHIFHRGTPLEKK---ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT- 60
Query: 207 KVSGRVTYNGHDMGEFVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTE 265
SG V Y+G + R Q+ ++ V + +AF+ + +
Sbjct: 61 --SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD------RD 112
Query: 266 LARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG-- 323
+A ++ +GL+ + +
Sbjct: 113 PVPLVKKA-----------------------------MEFVGLDF--------DSFKDRV 135
Query: 324 ---ISGGERKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLKQHVH 371
+SGGE++RV A+A L +DE GLD ++ +++
Sbjct: 136 PFFLSGGEKRRV---------AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEK-WK 185
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PREL 411
G VI + + D +++L G+ V+ G E
Sbjct: 186 -TLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 2e-14
Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 39/204 (19%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGG-YITGNITISGYPKKQETFA 931
L G+S + + G +++G SG+GK+TL+ +L T G + +K+ +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 932 R---ISGYCEQ--NDIHSPFVTVYES----LLYSAWLRLPPEVDSETRKMFIEEVMELVE 982
R + G+ Q I P +T E+ +L + K E ++ +
Sbjct: 80 RNRKL-GFVFQFHYLI--PELTALENVIVPMLKM-------GKPKKEAKERGEYLLSELG 129
Query: 983 L------KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
L KP LS +++R+ IA L P ++F DEPT LD+
Sbjct: 130 LGDKLSRKP-----------YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR 178
Query: 1037 VMRTVRNTVDTGRTVVCTIHQPGI 1060
VM + G ++V H+ +
Sbjct: 179 VMDIFLKINEGGTSIVMVTHEREL 202
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 62/249 (24%), Positives = 98/249 (39%), Gaps = 56/249 (22%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
ILK +S +K G ++G SGK+TLL L G LD+ G+V G ++
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAP--TEGKVFLEGKEVDYTNE 73
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN-E-----AGIKPD 278
+ + ++ +G F V + L+ EL EN G
Sbjct: 74 KELSLLRNR---KLG---------F------VFQFHYLIPELTALENVIVPMLKMGKPKK 115
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
K L LGL E+ SGGE++RV +
Sbjct: 116 -----EAKERGEY----------LLSELGLGDKLSRKPY-EL----SGGEQQRVAIARAL 155
Query: 339 V-GPALALFMDEISTG-LDSSTTFQIVNCLKQHVHINS-GTAVISLLQPAPETYDLFDDI 395
P L LF DE TG LDS+ T ++++ + IN GT+++ ++ E +L
Sbjct: 156 ANEPIL-LFADE-PTGNLDSANTKRVMDIFLK---INEGGTSIV-MVTHERELAELTHRT 209
Query: 396 ILLSDGQIV 404
+ + DG++V
Sbjct: 210 LEMKDGKVV 218
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.4 bits (187), Expect = 5e-14
Identities = 107/728 (14%), Positives = 199/728 (27%), Gaps = 243/728 (33%)
Query: 121 YEHLNVE-GEA-YLASKALPSFTKFYTTVFE--DIFNYL-GILPSRK-KHLTILKD-VSG 173
+ H++ E GE Y L F + F+ D+ + IL + H+ + KD VSG
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSS---LKVSGRVTYNGHDMGEFVPERTAAY 230
++ LL + + + + L + L + M T Y
Sbjct: 64 TLR--LFWTLL---SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM------MTRMY 112
Query: 231 ISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY-MKAIA 289
I Q D + V F+ V SR + +L R+ ++P ++ + +
Sbjct: 113 IEQRDRLYNDNQV-----FAKY--NV-SRLQPYLKL--RQALLELRPAKNVLIDGVLGS- 161
Query: 290 TEGQEANVITDYYLK-VLGLEVCADTMVGDEMIRGI---SGGERKRVTTGEMMVGPALAL 345
G K + L+VC V +M I + T M+ L
Sbjct: 162 --G-----------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 346 FMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL---QPAPETYDLFDDIILLSDGQ 402
++ D S+ ++ I+S A + L +P + ++ + +
Sbjct: 209 IDPNWTSRSDHSSNIKL--------RIHSIQAELRRLLKSKPYENCLLVLLNV---QNAK 257
Query: 403 IVYQGPRELVLEFFESMGFKCP-----KRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVT 457
+ C + K V DFL T+ ++
Sbjct: 258 AW------------NAFNLSCKILLTTRFKQVTDFLSAATTTH---------------IS 290
Query: 458 VEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMK 517
++ + DE+++ K L + RE+L
Sbjct: 291 LDHHSMTLTP--------DEVKSLLLK------YLDCRP----------QDLPREVL--T 324
Query: 518 RNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEIS 577
N +S +A + KH D T I
Sbjct: 325 TNPRR-------LSIIAESIRDGLATWDNWKHVNCDK--------LTTI---------IE 360
Query: 578 MTIAKL-PVFYKQR--DFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAG 634
++ L P Y++ FPP A IP L + +W +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSA--------HIPTILLSL-IWFDVIKSD-------- 403
Query: 635 RFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF-GTFALLVLFALGGFVLSREDIKK 693
V + + L + S+V T ++ ++ L +
Sbjct: 404 -----------VMVVVNKLHK------YSLVEKQPKESTISIPSIY----LELKVK---- 438
Query: 694 WWKWAYWCSPMSYAQNAIVA--NEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYW- 750
+IV N + P + Y+Y
Sbjct: 439 -------LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ---------------YFYSH 476
Query: 751 LG----------LGALFGFILLFNLGFTMA---------------ITFLNQLEKPRAVIT 785
+G LF + L + F + L QL+ + I
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFL-DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 786 EESESNKQ 793
+ ++
Sbjct: 536 DNDPKYER 543
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 2e-13
Identities = 96/600 (16%), Positives = 185/600 (30%), Gaps = 149/600 (24%)
Query: 67 EAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRV----GIDLPKVEVRYE 122
+AF V N + Q + ++ E+D+ ++ K + L K E +
Sbjct: 27 DAF---VDNFDCKDVQDMPKSILSKEEIDH---IIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 123 HLNVEGEA----YLASK-----ALPSF-TKFYTTVFEDIFNYLGILP----SRKKHLTIL 168
E +L S PS T+ Y + ++N + SR + L
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH--DMGEFVPER 226
+ ++P + L+ G SGKT + L + S KV ++ + ++
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVC----LSYKVQCKMDFKIFWLNLKNC--NS 194
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP------- 279
+ + + +++R S +L + E +K P
Sbjct: 195 PETVLEMLQK----LLYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 280 -DIDVY----MKA--------IATEGQE-ANVITDYYLKVLGLEVCADTMVGDEMIR--- 322
+V A + T ++ + ++ + L+ + T+ DE+
Sbjct: 250 LL-NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 323 ---GISGGERKRVTTGEMMVGP-ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV 378
+ R P L++ + I GL + ++ VNC K I S
Sbjct: 309 KYLDCRPQDLPREVLT---TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--- 362
Query: 379 ISLLQPAPETYDLFDDIILLSD-------------GQIVYQGPRELVLEFFE-SMGFKCP 424
+++L+PA E +FD + + ++ +V + + S+ K P
Sbjct: 363 LNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 425 KRK--GVADFLQEVTSRKDQK---------QY-------WTHKEKP------YRFV---- 456
K + E+ + + + Y P Y +
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 457 -------TVEEFAEAFQSFH-VGQKISDELRTPFDKSKSHRAALTT-EVYGAGKRELLKT 507
+ F F F + QKI + T ++ S S L + Y K +
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSILNTLQQLKFY---KPYICDN 537
Query: 508 CISRELL-------LMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGA 560
E L L K + K T + +AL M + I+ A
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL----------MAED----EAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 4e-12
Identities = 91/603 (15%), Positives = 162/603 (26%), Gaps = 184/603 (30%)
Query: 12 TSLRGN----ISRWRTSSVGAFSKSLREEDDEEALK--WAALEKLPTYNRLRKGLLTTSR 65
LR N +S +T S+ E + + YN R R
Sbjct: 85 EVLRINYKFLMSPIKTEQRQ---PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 66 GEAFEVDVS-NLGLQQ-----RQRLINKLVKVTEV----DNEKFLLKLKSRIDRVGIDLP 115
E+ + N+ + + + + +V D + F L L + L
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLE 200
Query: 116 KVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKH---LTILKDV- 171
++ ++ + + I L L K + L +L +V
Sbjct: 201 MLQKLLYQIDPNWTS------RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 172 -SGIIKP--GRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTA 228
+ +LL TT VT +F+ T
Sbjct: 255 NAKAWNAFNLSCKILL-------TTR--------FKQ------VT-------DFLSAATT 286
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAI 288
+IS + + +T E + + + R + L P + I
Sbjct: 287 THISLDHHSMT-LTPDEVKSLLLKY--LDCRPQDLPREVL-----TTNP-----RRLSII 333
Query: 289 ATEGQEANVITDYYLKVLG------LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
A ++ D + V +E + + E RK
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--------RKMFD--------R 377
Query: 343 LALFMDE--ISTGL--------DSSTTFQIVNCLKQHVHINSGTAVISLL--QPAPETY- 389
L++F I T L S +VN L ++ SL+ QP T
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----------SLVEKQPKESTIS 427
Query: 390 --DLFDDIILLSDG------QIV--YQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSR 439
++ ++ + + IV Y P+ F+S P D
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKT-----FDSDDLIPPY----LD-------- 470
Query: 440 KDQKQYWT-----HKEKPYRFVTVEEFAEAFQSFH-VGQKISDELRTPFDKSKSHRAALT 493
QY+ H + + F F F + QKI + T ++ S S L
Sbjct: 471 ----QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSILNTLQ 525
Query: 494 T------------EVYGAGKRELLK--------------TCISRELLLMKRNSFVYIFKL 527
Y +L T + R + LM + ++
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR-IALMAEDEAIFEEAH 584
Query: 528 TQI 530
Q+
Sbjct: 585 KQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 5e-11
Identities = 113/760 (14%), Positives = 219/760 (28%), Gaps = 268/760 (35%)
Query: 760 ILLFNLGFTMAITFLNQLEKPRAVITEESESN--KQDNRIRGTVQL----SARGESG--- 810
+ +F F + + P++++++E + + + GT++L ++ E
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 811 --EDISGRNSS-SKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVV----YSVDMPQEM- 862
E++ N S I TE + R I E +++ Y+V Q
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI---EQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 863 KLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTL-MDVLSGRKTGGYITGNITIS 921
KL+ L +L RP + GV G+GKT + +DV K
Sbjct: 139 KLRQALL-EL----------RPAKNVLIDGVLGSGKTWVALDVCLSYKV----------- 176
Query: 922 GYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV 981
Q F ++ WL L +S E V+E
Sbjct: 177 -----QCKM--------------DF-KIF-------WLNL-KNCNSP------ETVLE-- 200
Query: 982 ELKPLIQSL---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAAAIV 1037
++Q L + S +L I + A + +P + L +V
Sbjct: 201 ----MLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYENCL------LV 249
Query: 1038 MRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLI----- 1092
+ V+N ++AF+ SC+++
Sbjct: 250 LLNVQNA----------------KAWNAFN-------------------LSCKILLTTRF 274
Query: 1093 -SYFEAIPG-------VEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNK 1144
+ + ++ P + + L D
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLK----YLDCRPQD------------ 317
Query: 1145 ALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACL--WKQHWSYWRNPQYTAVRFFFTAFI 1202
L E+ P + + W W++ + + +
Sbjct: 318 -LPREVLTTNP----R---------RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 1203 AVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIF----------LGLQYCSSVQPVVSVE 1252
VL + + + +F+ + +F L L + ++ V V
Sbjct: 364 NVL----------EPAEYRKMFDRLS------VFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 1253 RTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAM-----------MGYDW 1301
++ YS + ++ I IP I+++ V YA+ +D
Sbjct: 408 VNKLHK------YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 1302 TAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAI----VSTLFYGIWYLFCGFVIP 1357
+ + Y ++ G HH+ I TLF + +L F+
Sbjct: 462 --DDLIPPYLDQYF----YSHIG---------HHLKNIEHPERMTLF-RMVFLDFRFLEQ 505
Query: 1358 RPRIPVWWRWYYWANPVAWTLYGLIASQFGDV---EDQM-ENGETVKHFLRDYFGFKHDF 1413
+ R + AW G I + + + + +N + + DF
Sbjct: 506 KIR----------HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL----DF 551
Query: 1414 L-----GLVAGVLTCFV--ALF---GFVFALGIKQLNFQR 1443
L L+ T + AL +F KQ+ QR
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV--QR 589
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 26/206 (12%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG---RKTGG-YITGNITISGYP 924
E+ + L ++ + G ++MG SG+GK+T+++++ G + T G NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDNIKTNDLD 73
Query: 925 KKQETFAR---ISGYCEQ--NDIHSPFVTVYES----LLYSAWLRLPPEVDSETRKMFIE 975
+ T R I G+ Q N I P +T E+ L++ + E R+
Sbjct: 74 DDELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGE----ERRKRAL 126
Query: 976 EVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
E +++ EL+ + P + LS Q++R+ IA L NP II D+PT LD++
Sbjct: 127 ECLKMAELEERFANH--KP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGE 182
Query: 1036 IVMRTVRN-TVDTGRTVVCTIHQPGI 1060
+M+ ++ + G+TVV H +
Sbjct: 183 KIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 56/250 (22%), Positives = 96/250 (38%), Gaps = 53/250 (21%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
+ LK+V+ IK G ++GP SGK+T +L + G LD G V + +
Sbjct: 18 IYALKNVNLNIKEGEFVSIMGPSGSGKST-MLNIIGCLDKP--TEGEVYIDNIKTNDLDD 74
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV- 283
+ + IG F V ++ L+ L EN V
Sbjct: 75 DELTKI---RRDKIG---------F------VFQQFNLIPLLTALEN-----------VE 105
Query: 284 ----YMKAIATEGQEANVITDYYLKVLGLEVCADTMVG---DEMIRGISGGERKRVTTGE 336
+ A G+E LK+ LE + +++ SGG+++RV
Sbjct: 106 LPLIFKYRGAMSGEERRKRALECLKMAELE---ERFANHKPNQL----SGGQQQRVAIAR 158
Query: 337 MMV-GPALALFMDEISTG-LDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394
+ P + + D+ T LDS T +I+ LK+ ++ G V+ ++ +
Sbjct: 159 ALANNPPI-ILADQ-PTWALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARFGER 214
Query: 395 IILLSDGQIV 404
II L DG++
Sbjct: 215 IIYLKDGEVE 224
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 1e-12
Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 39/204 (19%)
Query: 872 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ- 927
L+G+S + G +T ++G +G+GK+TL++V++G + G + N I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 928 ------ETFARISGYCEQNDIHSPF--VTVYE-----------SLLYSAWLRLPPEVDSE 968
TF Q P +TV E S L S + + + E
Sbjct: 80 YHYGIVRTF--------QT-PQ-PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE 129
Query: 969 TRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028
+ +++E ++L L G LS Q K + I L+ NP +I MDEP +G
Sbjct: 130 MVEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 183
Query: 1029 LDARAAAIVMRTVRNTVDTGRTVV 1052
+ A + V G T +
Sbjct: 184 VAPGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 1e-09
Identities = 52/198 (26%), Positives = 74/198 (37%), Gaps = 41/198 (20%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
L VS + G +TL++GP SGK+TL+ + G L + GRV + D+ P
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 76
Query: 225 ERTAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
Y I Q + EMTV E L C G L + + E
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE------- 129
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE---- 336
M A + L+ L L D G+ +SGG+ K V E
Sbjct: 130 ----MVEKAFK----------ILEFLKLSHLYDRKAGE-----LSGGQMKLV---EIGRA 167
Query: 337 MMVGPALALFMDEISTGL 354
+M P + + MDE G+
Sbjct: 168 LMTNPKM-IVMDEPIAGV 184
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 2e-11
Identities = 49/219 (22%), Positives = 82/219 (37%), Gaps = 66/219 (30%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITIS 921
D V+L+ ++ + + G + ++G SG+GK+TL +G+ + I
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLID 69
Query: 922 GYPKK---------------QET--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE 964
G+ Q+ R ++ +++ + P
Sbjct: 70 GHDLALADPNWLRRQVGVVLQDNVLLNR---------------SIIDNISLAN-----PG 109
Query: 965 VDSETRKMFIEEVMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANP 1017
+ E + +L I L VG G LS QR+R+ IA LV NP
Sbjct: 110 MSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNP 164
Query: 1018 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
I+ DE TS LD + ++MR + GRTV+ H
Sbjct: 165 KILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 1e-04
Identities = 58/285 (20%), Positives = 108/285 (37%), Gaps = 94/285 (32%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F +I F Y + IL +++ IK G + ++G SGK+TL +
Sbjct: 10 FRNIRFRY------KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE- 62
Query: 207 KVSGRVTYNGHDMGEFVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLT 264
+G+V +GHD+ P R +G + +++ + + S
Sbjct: 63 --NGQVLIDGHDLALADPNWLR---------RQVG-VVLQDNVLLN------RS------ 98
Query: 265 ELARRENEAGIKPDPDIDVYMKAIATEGQEANV---ITD----YYLKVLGLEVCADTMVG 317
+N + P ++ + A + A I++ Y +T+VG
Sbjct: 99 ---IIDNISLANPGMSVEKVIYAA----KLAGAHDFISELREGY-----------NTIVG 140
Query: 318 DEMIRGI--SGGERKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCL 366
+ +G SGG+R+R+ A+A L DE ++ LD + I+ +
Sbjct: 141 E---QGAGLSGGQRQRI---------AIARALVNNPKILIFDEATSALDYESEHVIMRNM 188
Query: 367 KQHVHINSGTAVI----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ + +I S ++ A D II++ G+IV QG
Sbjct: 189 HK-ICKGRTVIIIAHRLSTVKNA-------DRIIVMEKGKIVEQG 225
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 3e-11
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 45/199 (22%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQ 927
L +S +P + A G SG GK+T+ +G ITI G P
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITIDGQPIDN 68
Query: 928 ETFA----RISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL 980
+ +I G+ Q+ + T+ E+L Y L + E + +V++L
Sbjct: 69 ISLENWRSQI-GFVSQD----SAIMAGTIRENLTYG----LEGDYTDED----LWQVLDL 115
Query: 981 VELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
+ ++++ VG GV +S QR+RL IA + NP I+ +DE T+ LD+ +
Sbjct: 116 AFARSFVENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
Query: 1034 AAIVMRTVRNTVDTGRTVV 1052
++V + + +++ GRT +
Sbjct: 175 ESMVQKAL-DSLMKGRTTL 192
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 59/276 (21%), Positives = 99/276 (35%), Gaps = 76/276 (27%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
+ F Y ++ IL+D+S +P + GP GK+T+ SL
Sbjct: 4 ARHVDFAY----DDSEQ---ILRDISFEAQPNSIIAFAGPSGGGKSTI---------FSL 47
Query: 207 ------KVSGRVTYNGHDMGEFVPE--RTA-AYISQHDNHIGEMTVRETLAFSARCQGVG 257
+G +T +G + E R+ ++SQ D+ I T+RE L +
Sbjct: 48 LERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQ-DSAIMAGTIRENLTY-------- 98
Query: 258 SRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317
G++ D + + + A + V + +T VG
Sbjct: 99 ----------------GLEGDYTDEDLWQVL----DLAF-ARSF---VENMPDQLNTEVG 134
Query: 318 DEMIRGI--SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG 375
+ RG+ SGG+R+R+ + L +DE + LDS + + L +
Sbjct: 135 E---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL-DSLMKGRT 190
Query: 376 TAVI----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
T VI S + A D I + GQI G
Sbjct: 191 TLVIAHRLSTIVDA-------DKIYFIEKGQITGSG 219
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 3e-11
Identities = 53/207 (25%), Positives = 81/207 (39%), Gaps = 54/207 (26%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQ 927
L +S PG AL+G SGAGK+T++ D+ SG I I G Q
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRIDGQDISQ 120
Query: 928 ETFA---RISGYCEQ-----NDIHSPFVTVYESLLY---SAWLRLPPEVDSETRKMFIEE 976
T A G Q ND T+ +++ Y +A + E +E
Sbjct: 121 VTQASLRSHIGVVPQDTVLFND------TIADNIRYGRVTAG-------NDE-----VEA 162
Query: 977 VMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
+ + I + VG G+ LS +++R+ IA ++ P II +DE TS L
Sbjct: 163 AAQAAGIHDAIMAFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSAL 221
Query: 1030 DARAAAIVMRTVRNTVDTGRTVVCTIH 1056
D + ++ V RT + H
Sbjct: 222 DTSNERAIQASL-AKVCANRTTIVVAH 247
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-10
Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 40/201 (19%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQ 927
L GLS + G AL+G SG GK+T++ D ++G + + G KQ
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEIKQ 1099
Query: 928 ETFARISGYCEQNDIHS--PFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 982
+ Q I S P + ++ E++ Y R+ + I +
Sbjct: 1100 ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE-------IVRAAKEAN 1149
Query: 983 LKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
+ I SL VG G LS Q++R+ IA LV P I+ +DE TS LD +
Sbjct: 1150 IHQFIDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 1036 IVMRTVRNTVDTGRTVVCTIH 1056
+V + + GRT + H
Sbjct: 1209 VVQEAL-DKAREGRTCIVIAH 1228
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-10
Identities = 55/213 (25%), Positives = 78/213 (36%), Gaps = 66/213 (30%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKK- 926
L GL+ + G AL+G SG GK+T + D L G ++I G +
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM---------VSIDGQDIRT 456
Query: 927 --------------QET--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETR 970
QE FA T+ E++ Y E
Sbjct: 457 INVRYLREIIGVVSQEPVLFAT---------------TIAENIRYG----REDVTMDE-- 495
Query: 971 KMFIEEVMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
IE+ ++ I L VG G LS Q++R+ IA LV NP I+ +D
Sbjct: 496 ---IEKAVKEANAYDFIMKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLD 551
Query: 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
E TS LD + A+V + GRT + H
Sbjct: 552 EATSALDTESEAVVQAALDK-AREGRTTIVIAH 583
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 147 VFEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205
F++I F+Y PSRK + ILK ++ +K G+ L+G GK+T + + D
Sbjct: 389 EFKNIHFSY----PSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL 443
Query: 206 LKVSGRVTYNGHD 218
G V+ +G D
Sbjct: 444 ---DGMVSIDGQD 453
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 5e-10
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 37/198 (18%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-ITGNITISGYPKKQETFA-- 931
L ++ G AL+G +G+GK+T+ +L R Y G+I I G +
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVNKYNRNSI 91
Query: 932 -RISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 985
I G Q N+ T+ ++LY + E + + + +L
Sbjct: 92 RSIIGIVPQDTILFNE------TIKYNILYGK-----LDATDEE----VIKATKSAQLYD 136
Query: 986 LIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
I++L VG G+ LS +R+R+ IA L+ +P I+ DE TS LD++ +
Sbjct: 137 FIEALPKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 1039 RTVRNTVDTGRTVVCTIH 1056
+ V + + RT++ H
Sbjct: 196 KAVED-LRKNRTLIIIAH 212
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 60/272 (22%), Positives = 110/272 (40%), Gaps = 68/272 (25%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F D+ F+Y ++ + LK ++ I G L+G SGK+T+ L D
Sbjct: 20 FSDVNFSY-----PKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--- 71
Query: 207 KVSGRVTYNGHDMGEFVPERTAAYISQHD--NHIGEMTVRETLAFSARCQGVGSRYELLT 264
G + G ++ + +++ + IG + ++T+ F+
Sbjct: 72 -AEGDIKIGGKNVNK---------YNRNSIRSIIG-IVPQDTILFNETI----------- 109
Query: 265 ELARRENEAGIKPDPDIDVYMKAIATEGQ--EANVITDYYLKVLGLEVCADTMVGDEMIR 322
+ N K D AT+ + +A Y + L DT+VG+ +
Sbjct: 110 ----KYNILYGKLD----------ATDEEVIKATKSAQLYDFIEALPKKWDTIVGN---K 152
Query: 323 GI--SGGERKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
G+ SGGER+R+ ++ P + + DE ++ LDS T + ++ + N +I
Sbjct: 153 GMKLSGGERQRIAIARCLLKDPKI-VIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIII 210
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
S + A + IILL+ G+IV +G
Sbjct: 211 AHRLSTISSA-------ESIILLNKGKIVEKG 235
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 48/214 (22%), Positives = 71/214 (33%), Gaps = 65/214 (30%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKK- 926
L GL+ PG +TAL+G +G+GK+T+ G+ + + G P
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPLVQ 85
Query: 927 --------------QET--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETR 970
QE F R + E++ Y L E
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFGR---------------SFRENIAYG----LTRTPTMEE- 125
Query: 971 KMFIEEVMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
I V I VG G LS QR+ + +A L+ P ++ +D
Sbjct: 126 ---ITAVAMESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILD 181
Query: 1024 EPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIH 1056
TS LDA V R + + RTV+
Sbjct: 182 NATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 59/298 (19%), Positives = 103/298 (34%), Gaps = 116/298 (38%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F+D+ F Y P+ +L+ ++ + PG++T L+GP SGK+T+ +L
Sbjct: 19 FQDVSFAY----PNHPNV-QVLQGLTFTLYPGKVTALVGPNGSGKSTVA---------AL 64
Query: 207 ------KVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGE-----MTVRETLAFSAR 252
G+V +G + ++ A + Q E + RE +A+
Sbjct: 65 LQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQ------EPLLFGRSFRENIAY--- 115
Query: 253 CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANV---ITD----YYLKV 305
G+ P ++ E+ I+ Y
Sbjct: 116 ---------------------GLTRTPTMEEITAV----AMESGAHDFISGFPQGY---- 146
Query: 306 LGLEVCADTMVGDEMIRGI--SGGERKRVTTGEMMVGPALA---------LFMDEISTGL 354
DT VG+ G SGG+R+ V ALA L +D ++ L
Sbjct: 147 -------DTEVGE---TGNQLSGGQRQAV---------ALARALIRKPRLLILDNATSAL 187
Query: 355 DSSTTFQIVNCLKQHVHINSGTAVI-----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
D+ ++ L + S T ++ SL + A I+ L +G + QG
Sbjct: 188 DAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERA-------HHILFLKEGSVCEQG 238
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 2e-09
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 28/163 (17%)
Query: 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 933
LLN + + G +G GK+TLM ++ + G+ P ++E R
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGF----------PTQEE--CRT 497
Query: 934 SGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 992
Y E + D +V + + E T++ I++ + + ++
Sbjct: 498 -VYVEHDIDGTHSDTSVLDFVF---------ESGVGTKEA-IKDKLIEFGFTDEMIAMP- 545
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
+S LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 ---ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 8e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+ GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 68/285 (23%), Positives = 111/285 (38%), Gaps = 93/285 (32%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-E 225
ILK V+ ++ G + L+GP +GK+TL LAG + ++ G + +G ++ E P E
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-ERGEILLDGENILELSPDE 76
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQ------GVGSRYELLTEL-ARRENEAGIKPD 278
R + LAF Q GV L L A+ E
Sbjct: 77 RARKGL--------------FLAF----QYPVEVPGVTIANFLRLALQAKLGRE------ 112
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR-----GISGGERKRVT 333
+ + + L++L + + + G SGGE+KR
Sbjct: 113 VGVAEFWTKVKKA-----------LELLDWD--------ESYLSRYLNEGFSGGEKKRNE 153
Query: 334 TGEM-MVGPALALFMDEISTGLDSSTTFQI---------VNCLKQHVHINSGTAVIS--- 380
++ ++ P A+ +DE +GLD I VN ++ N G VI+
Sbjct: 154 ILQLLVLEPTYAV-LDETDSGLD------IDALKVVARGVNAMRGP---NFGALVITHYQ 203
Query: 381 -LL---QPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGF 421
+L QP D + ++ DG++V G EL LE E+ G+
Sbjct: 204 RILNYIQP--------DKVHVMMDGRVVATGGPELALE-LEAKGY 239
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 51/201 (25%), Positives = 80/201 (39%), Gaps = 46/201 (22%)
Query: 864 LQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-IT-GNITIS 921
L ++ + +L G++ G + ALMG +GAGK+TL +L+G Y + G I +
Sbjct: 9 LWASIDGETIL-KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLD 65
Query: 922 G---------------------YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLR 960
G YP E + G VT+ L + +
Sbjct: 66 GENILELSPDERARKGLFLAFQYP--VE----VPG-----------VTIANFLRLALQAK 108
Query: 961 LPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1020
L EV +++ +EL++ S + G S ++KR I LV P+
Sbjct: 109 LGREVGVAEFWTKVKKALELLDWDE---SYLSRYLNEGFSGGEKKRNEILQLLVLEPTYA 165
Query: 1021 FMDEPTSGLDARAAAIVMRTV 1041
+DE SGLD A +V R V
Sbjct: 166 VLDETDSGLDIDALKVVARGV 186
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 2e-08
Identities = 49/193 (25%), Positives = 75/193 (38%), Gaps = 61/193 (31%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITIS 921
+++ +L ++ + G A +G+SG GK+TL+ DV SG+ I I
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILID 401
Query: 922 GYPKK---------------QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVD 966
G+ K Q+ S TV E++L P
Sbjct: 402 GHNIKDFLTGSLRNQIGLVQQDNIL-FSD------------TVKENILLGR-----PTAT 443
Query: 967 SETRKMFIEEVMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSI 1019
E + E ++ I +L VG GV LS Q++RL+IA + NP I
Sbjct: 444 DEE----VVEAAKMANAHDFIMNLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPI 498
Query: 1020 IFMDEPTSGLDAR 1032
+ +DE TS LD
Sbjct: 499 LILDEATSALDLE 511
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 2e-08
Identities = 60/267 (22%), Positives = 99/267 (37%), Gaps = 78/267 (29%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+K + + G++ L+G +GKTT L A+AG + + G++ +NG D+
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77
Query: 227 TA----AYISQHDNHIGEMTVRETL---AFSARCQGVGSR-----YEL---LTELARREN 271
A + + E+TV E L A++ + + R + L L E R +
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE--RLKQ 135
Query: 272 EAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKR 331
G T+ SGGE++
Sbjct: 136 LGG---------------------------------------TL---------SGGEQQM 147
Query: 332 VTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHIN-SGTAVISLL--QPAPE 387
+ G +M P L L MDE S GL ++ +++ IN GT + LL Q A
Sbjct: 148 LAIGRALMSRPKL-LMMDEPSLGLAPILVSEVFEVIQK---INQEGTTI--LLVEQNALG 201
Query: 388 TYDLFDDIILLSDGQIVYQGPRELVLE 414
+ +L GQIV +G +L+
Sbjct: 202 ALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 1e-06
Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 28/193 (14%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKK 926
+ + G+ G + L+G +GAGKTT + ++G R G I I+ P
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 927 QETFARISGYCEQNDIHSP-----F--VTVYESLLYSAWLRLPPEVDSETRKMFIEEVME 979
I+ P F +TVYE+L+ A+ R D E K +E +
Sbjct: 77 VINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFS 124
Query: 980 LV-ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
L LK ++ L G LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 125 LFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 1039 RTVRNTVDTGRTV 1051
++ G T+
Sbjct: 180 EVIQKINQEGTTI 192
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 62/281 (22%), Positives = 104/281 (37%), Gaps = 94/281 (33%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV-SGRVTYNGHDMGEFVP- 224
IL+ +S + PG + ++GP SGK+TL LAG+ +V G V + G D+ P
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLLALSPE 92
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQ------GVGSRYELLTELARRENEAGIKPD 278
+R I +AF Q GV +++ L T L + G +
Sbjct: 93 DRAGEGI--------------FMAF----QYPVEIPGVSNQFFLQTALNAVRSYRGQETL 134
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR-----GISGGERKRVT 333
D + +L + ++++ G SGGE+KR
Sbjct: 135 DRFDFQDLMEEK------------IALLKMP--------EDLLTRSVNVGFSGGEKKR-- 172
Query: 334 TGE----MMVGPALALFMDEISTGLDSSTTFQI---------VNCLKQHVHINSGTAVIS 380
+ ++ P L + +DE +GLD I VN L+ +++
Sbjct: 173 -NDILQMAVLEPELCI-LDESDSGLD------IDALKVVADGVNSLRDG---KRSFIIVT 221
Query: 381 ----LL---QPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
+L +P D + +L G+IV G LV +
Sbjct: 222 HYQRILDYIKP--------DYVHVLYQGRIVKSGDFTLVKQ 254
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 7e-04
Identities = 57/205 (27%), Positives = 84/205 (40%), Gaps = 58/205 (28%)
Query: 864 LQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-IT-GNITIS 921
L +EDK +L GLS PG + A+MG +G+GK+TL L+GR+ Y +T G +
Sbjct: 26 LHVSVEDKAIL-RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFK 82
Query: 922 G---------------------YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAW-- 958
G YP E I G V+ L +A
Sbjct: 83 GKDLLALSPEDRAGEGIFMAFQYP--VE----IPG-----------VSNQF-FLQTALNA 124
Query: 959 ---LRLPPEVDSETRKMFIEEVMELVELKP--LIQSL-VGLPGVSGLSTEQRKRLTIAVE 1012
R +D + +EE + L+++ L +S+ VG G G ++KR I
Sbjct: 125 VRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG--G----EKKRNDILQM 178
Query: 1013 LVANPSIIFMDEPTSGLDARAAAIV 1037
V P + +DE SGLD A +V
Sbjct: 179 AVLEPELCILDESDSGLDIDALKVV 203
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 42/209 (20%), Positives = 78/209 (37%), Gaps = 47/209 (22%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE 928
+L +S + PG L+G +G+GK+TL+ G I I G
Sbjct: 32 GGNAIL-ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGV----- 82
Query: 929 TFARISGYCEQNDIHSPFVTVY-----------ESLLYSAWLRL---PPEVDSETRKMFI 974
S +T+ + ++S R P S+ I
Sbjct: 83 ------------SWDS--ITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE---I 125
Query: 975 EEVMELVELKPLIQSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028
+V + V L+ +I+ G + G LS ++ + +A +++ I+ +DEP++
Sbjct: 126 WKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAH 185
Query: 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1057
LD I+ RT++ TV+ +
Sbjct: 186 LDPVTYQIIRRTLKQAF-ADCTVILCEAR 213
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 3e-08
Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 47/186 (25%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITIS 921
++K L + +S + G AL+G SG+GK+T+ DV SG I +
Sbjct: 354 KEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS---------ICLD 403
Query: 922 GYPKKQETFA---RISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMF 973
G+ + R Q ND T+ ++ Y+A E E
Sbjct: 404 GHDVRDYKLTNLRRHFALVSQNVHLFND------TIANNIAYAA----EGEYTREQ---- 449
Query: 974 IEE------VMELVELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1026
IE+ ME +E P + +++G G S LS QR+R+ IA L+ + ++ +DE T
Sbjct: 450 IEQAARQAHAMEFIENMPQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEAT 508
Query: 1027 SGLDAR 1032
S LD
Sbjct: 509 SALDTE 514
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 5e-08
Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 46/180 (25%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQ 927
L ++ G AL+G SG+GK+T+ D+ G I + G+ ++
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH---------ILMDGHDLRE 409
Query: 928 ETFA---RISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE--- 976
T A Q ND TV ++ Y+ E S + IEE
Sbjct: 410 YTLASLRNQVALVSQNVHLFND------TVANNIAYAR-----TEEYSREQ---IEEAAR 455
Query: 977 ---VMELVELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
M+ + + +++G GV LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 456 MAYAMDFINKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 6e-08
Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 889 ALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSP 945
L+G +GAGK+ +++++G + G + I+ P ++ R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 946 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 1005
++VY ++ Y LR V+ + R + E+ E + + L+ + LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 1006 RLTIAVELVANPSIIFMDEPTSGLDAR 1032
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 43/183 (23%), Positives = 60/183 (32%), Gaps = 75/183 (40%)
Query: 183 LLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQ------HD 235
LLGP +GK+ L +AG + G V NG D+ PE R ++ Q H
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH- 84
Query: 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEA 295
++V +A+ R V E RR E
Sbjct: 85 -----LSVYRNIAYGLR--NVERV-----ERDRRVREM---------------------- 110
Query: 296 NVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA---------LF 346
+ LG+ + D +SGGER+RV ALA L
Sbjct: 111 -------AEKLGIA-----HLLDRKPARLSGGERQRV---------ALARALVIQPRLLL 149
Query: 347 MDE 349
+DE
Sbjct: 150 LDE 152
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
LN +S G + ++G SGAGK+TL+ ++ R T G + ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 932 RIS-GYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 988
R G Q N + S TV+ ++ P E+D+ + V EL+
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVAL------PLELDNTPKDEVKRRVTELLS------ 149
Query: 989 SLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
LVGL S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 150 -LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 59/304 (19%), Positives = 102/304 (33%), Gaps = 93/304 (30%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV--SGRVTYNG 216
+ + L +VS + G++ ++G +GK+TL+ + L+ G V +G
Sbjct: 35 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL-----LERPTEGSVLVDG 89
Query: 217 HDMGEFVPERTAAY------ISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRE 270
++ I QH N + TV +A E+ RR
Sbjct: 90 QELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-----EVKRRV 144
Query: 271 NEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERK 330
E L ++GL D+ + +SGG+++
Sbjct: 145 TE-----------------------------LLSLVGLGDKHDSYPSN-----LSGGQKQ 170
Query: 331 RVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGT--------- 376
RV + ALA L D+ ++ LD +TT I+ LK IN
Sbjct: 171 RVA-----IARALASNPKVLLCDQATSALDPATTRSILELLKD---INRRLGLTILLITH 222
Query: 377 --AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQ 434
V+ + D + ++S+G+++ Q V E F PK F+Q
Sbjct: 223 EMDVVK---------RICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKFIQ 265
Query: 435 EVTS 438
Sbjct: 266 STLH 269
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 7e-07
Identities = 47/197 (23%), Positives = 70/197 (35%), Gaps = 67/197 (34%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
++ VS I+ G M LLGP SGKTT+L +AG + G V G + + P
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQ 85
Query: 225 ERTAAYISQHD---NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
+R + Q+ H MTV + ++F R + V E+ R E
Sbjct: 86 KRNVGLVFQNYALFQH---MTVYDNVSFGLREKRVPK-----DEMDARVREL-------- 129
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
L+ + LE + +SGG+++RV
Sbjct: 130 ---------------------LRFMRLE-----SYANRFPHELSGGQQQRV--------- 154
Query: 342 ALA---------LFMDE 349
ALA L DE
Sbjct: 155 ALARALAPRPQVLLFDE 171
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 25/166 (15%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
+ G+S R G + L+G SG+GKTT++ +++G R T G + G ++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 991
R G QN +TVY+++ + + P+ + + R V EL+ +
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR------VRELLRF-------M 133
Query: 992 GLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
L + LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 134 RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 8e-07
Identities = 62/308 (20%), Positives = 103/308 (33%), Gaps = 120/308 (38%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
L ++ I G + ++G GK++LL AL ++D KV G V G
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG---------- 66
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
+ AY+ Q I ++RE + F G + E
Sbjct: 67 SVAYVPQQ-AWIQNDSLRENILF-------GCQLE------------------------- 93
Query: 287 AIATEGQEANVITDYYLKVLGLEVCA------------DTMVGDEMIRGI--SGGERKRV 332
YY V ++ CA T +G+ +G+ SGG+++RV
Sbjct: 94 ------------EPYYRSV--IQACALLPDLEILPSGDRTEIGE---KGVNLSGGQKQRV 136
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLKQHVHINSGTAV--- 378
+LA LF D +S +D+ I N + + + T +
Sbjct: 137 ---------SLARAVYSNADIYLFDDPLS-AVDAHVGKHIFENVIGPKGMLKNKTRILVT 186
Query: 379 --ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
+S L D II++S G+I G + +L + A+FL+
Sbjct: 187 HSMSYLPQV-------DVIIVMSGGKISEMGSYQELLA----------RDGAFAEFLRTY 229
Query: 437 TSRKDQKQ 444
S
Sbjct: 230 ASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 7e-06
Identities = 45/215 (20%), Positives = 89/215 (41%), Gaps = 45/215 (20%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
LNG++ + G L A++G G GK++L+ L K G++ I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 933 ISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 989
++ Y Q ++ ++ E++L+ + + + V++ L P ++
Sbjct: 68 VA-YVPQ----QAWIQNDSLRENILFG----------CQLEEPYYRSVIQACALLPDLEI 112
Query: 990 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV- 1041
L +G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 113 LPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171
Query: 1042 -RNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
+ +T + H + D + +M G
Sbjct: 172 GPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 1e-06
Identities = 55/299 (18%), Positives = 99/299 (33%), Gaps = 108/299 (36%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM---GEF 222
+L D+S + PG + ++G GKTTLL LAG SG ++ +G +
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTN 74
Query: 223 VP--ERTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
+P ER Y+ Q H +TV +A+ + + +R
Sbjct: 75 LPVRERRLGYLVQEGVLFPH------LTVYRNIAYGLGNGKGRTA-----QERQRIEAM- 122
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
L++ G+ A +SGG+++R
Sbjct: 123 ----------------------------LELTGISELA-----GRYPHELSGGQQQRA-- 147
Query: 335 GEMMVGPALA---------LFMDEISTGLD----SSTTFQIVNCLKQHVHINSGTAVISL 381
ALA + +DE + LD ++ L+ +G + + +
Sbjct: 148 -------ALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA-----NGKSAVFV 195
Query: 382 LQPAPETYD------LFDDIILLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
++D D I ++ G+I+ P EL ++ P A F+
Sbjct: 196 ------SHDREEALQYADRIAVMKQGRILQTASPHEL---------YRQPADLDAALFI 239
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 6e-06
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 25/168 (14%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
LN +S + PG + ++G SG GKTTL+ L+G + G I+ TI
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 932 RISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 989
R GY Q P +TVY ++ Y R + ++EL
Sbjct: 80 RRLGYLVQE--GVLFPHLTVYRNIAYGLGNGKGRTAQERQR------IEAMLEL------ 125
Query: 990 LVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
G+ ++G LS Q++R +A L +P +I +DEP S LD +
Sbjct: 126 -TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 999 LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
LS +R L +A L S++ +DEPT LD ++ + + V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 1053 CTIHQPGIDIFDAFDELFLMKRGGQEIYV 1081
H ++ DA D + + V
Sbjct: 309 LVSHDE--ELKDAADHVIRISLENGSSKV 335
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 42/213 (19%), Positives = 87/213 (40%), Gaps = 44/213 (20%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 933 ISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 989
IS +C Q + ++ T+ E+++ ++ D V++ +L+ I
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSY-------DEY----RYRSVIKACQLEEDISK 144
Query: 990 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
+G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 145 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 1043 NTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
+ +T + + ++ D++ ++ G
Sbjct: 204 CKLMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 51/278 (18%), Positives = 97/278 (34%), Gaps = 116/278 (41%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+LKD++ I+ G++ + G +GKT+LL+ + G+L+ G++ ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 99
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
++ SQ ++ I T++E + +G Y+
Sbjct: 100 RISFCSQ-NSWIMPGTIKENI--------IGVSYD------------------------- 125
Query: 287 AIATEGQEANVITDYYLKVLGLEVCA------------DTMVGDEMIRGI--SGGERKRV 332
Y V ++ C + ++G+ GI SGG+R R+
Sbjct: 126 ------------EYRYRSV--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI 168
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLKQHVHINSGTAVI-- 379
+LA L LD T +I +C+ + + + I
Sbjct: 169 ---------SLARAVYKDADLYLLDSPFG-YLDVLTEKEIFESCVCKLM---ANKTRILV 215
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQGP-RELV 412
L+ A D I++L +G + G EL
Sbjct: 216 TSKMEHLKKA-------DKILILHEGSSYFYGTFSELQ 246
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 53/288 (18%), Positives = 98/288 (34%), Gaps = 118/288 (40%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+LKD++ I+ G++ + G +GKT+LL+ + G+L+ G++ ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
++ SQ + I T++E + F G Y+
Sbjct: 70 RISFCSQF-SWIMPGTIKENIIF-------GVSYD------------------------- 96
Query: 287 AIATEGQEANVITDYYLKVLGLEVCA------------DTMVGDEMIRGI--SGGERKRV 332
Y V ++ C + ++G+ GI SGG+R R+
Sbjct: 97 ------------EYRYRSV--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI 139
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLKQHVHINSGTAVI-- 379
+LA L LD T +I +C+ + + I
Sbjct: 140 ---------SLARAVYKDADLYLLDSPFGY-LDVLTEKEIFESCVCKLMA---NKTRILV 186
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQGP-RELV---LEFFESM 419
L+ A D I++L +G + G EL +F +
Sbjct: 187 TSKMEHLKKA-------DKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 6e-06
Identities = 41/213 (19%), Positives = 85/213 (39%), Gaps = 43/213 (20%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 933 ISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 989
IS +C Q ++ T+ E++++ + V++ +L+ I
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIF----------GVSYDEYRYRSVIKACQLEEDISK 115
Query: 990 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
+G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 116 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 174
Query: 1043 NTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
+ +T + + ++ D++ ++ G
Sbjct: 175 CKLMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 28/174 (16%)
Query: 871 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYI-------TGNITIS 921
K+V L+ ++ G ++G SGAGKTT M +++G + G + N +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 922 GYPKKQET---FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 978
P+ ++ F Q P +T +E++ + + + R +EEV
Sbjct: 77 VPPEDRKIGMVF--------QTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVA 125
Query: 979 ELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
+++++ + L P LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 126 KILDIHHV---LNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 7e-05
Identities = 38/196 (19%), Positives = 67/196 (34%), Gaps = 60/196 (30%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM----GE 221
L +V+ I+ G +LGP +GKTT + +AG S +G + ++ +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKL 75
Query: 222 FVP--ERTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA 273
VP +R + Q + +T E +AF + E+ +R E
Sbjct: 76 IVPPEDRKIGMVFQTWALYPN------LTAFENIAFPLTNMKMSK-----EEIRKRVEEV 124
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT 333
K+L + V + R +SG +++RV
Sbjct: 125 -----------------------------AKILDIH-----HVLNHFPRELSGAQQQRVA 150
Query: 334 TGEMMVGPALALFMDE 349
+V L +DE
Sbjct: 151 LARALVKDPSLLLLDE 166
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 4e-05
Identities = 43/200 (21%), Positives = 71/200 (35%), Gaps = 76/200 (38%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
L ++S ++ G ++LGP +GKT L +AG SGR+ +G D+ + PE
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPE 70
Query: 226 -RTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
A++ Q H M V++ L F R + + + +R +
Sbjct: 71 KHDIAFVYQNYSLFPH------MNVKKNLEFGMRMKKI--------KDPKRVLDT----- 111
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
+ L +E + D +SGGE++RV
Sbjct: 112 ------------------------ARDLKIE-----HLLDRNPLTLSGGEQQRV------ 136
Query: 339 VGPALA---------LFMDE 349
ALA L +DE
Sbjct: 137 ---ALARALVTNPKILLLDE 153
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 4e-05
Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 30/167 (17%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
L+ LS G ++G +GAGKT +++++G G I ++ ++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE-VMELVELKPLIQSL 990
+ QN P + V ++L + +R+ +K+ + V++
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFG--MRM--------KKIKDPKRVLDTARD------- 114
Query: 991 VGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
+ + + LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 9e-05
Identities = 50/212 (23%), Positives = 80/212 (37%), Gaps = 65/212 (30%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITIS 921
+ K +L ++ +PG AL+G +G+GKTT++ DV G+ I +
Sbjct: 366 KKKP-VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ---------ILVD 415
Query: 922 GYPKKQETFARISGYCEQNDIHSPF--V---------TVYESLLYSAWLRLPPEVDSETR 970
G ++ ++ + S V TV E+L Y P E
Sbjct: 416 GIDIRKIK---------RSSLRSSIGIVLQDTILFSTTVKENLKYGN-----PGATDEE- 460
Query: 971 KMFIEEVMELVELKPLIQSLVGLPG---------VSGLSTEQRKRLTIAVELVANPSIIF 1021
I+E +L I+ L P LS QR+ L I +ANP I+
Sbjct: 461 ---IKEAAKLTHSDHFIKHL---PEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILI 514
Query: 1022 MDEPTSGLDARAAAIV---MRTVRNTVDTGRT 1050
+DE TS +D + + M + G+T
Sbjct: 515 LDEATSNVDTKTEKSIQAAMWKLM----EGKT 542
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFD 1064
RL +++ L S++ +DEPT LD ++ + + V+ H ++ D
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 1065 AFDELFLMKRGGQEIYVGPLG 1085
A D + I +
Sbjct: 128 AADHV---------IRISLEN 139
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 34/163 (20%)
Query: 890 LMGVSGAGKTTLMDVLSGRKTGGYIT-GNITISGY------PKKQET---FARISGYCEQ 939
L+G SG+GK+TL+ ++G T G I PK + F Q
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPKDRNVGLVF--------Q 82
Query: 940 NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 999
N P +TVY+++ + LR P + + + + EV +++ + L L P L
Sbjct: 83 NWALYPHMTVYKNIAFPLELRKAPREEIDKK---VREVAKMLHIDKL---LNRYP--WQL 134
Query: 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1040
S Q++R+ IA LV P ++ +DEP S LDA R +R
Sbjct: 135 SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 44/204 (21%), Positives = 84/204 (41%), Gaps = 36/204 (17%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP-KKQETFARI 933
L G+S R G + +++G SG+GK+T + ++ + G I ++G
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQ 79
Query: 934 SGYCEQNDIHS---------------PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 978
++N + +TV E+++ + P +V ++ E +
Sbjct: 80 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-----PIQVLGLSKHDARERAL 134
Query: 979 ELVELKPLIQSLVGLPGV------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
+ + VG+ LS Q++R++IA L P ++ DEPTS LD
Sbjct: 135 KYLAK-------VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187
Query: 1033 AAAIVMRTVRNTVDTGRTVVCTIH 1056
V+R ++ + G+T+V H
Sbjct: 188 LVGEVLRIMQQLAEEGKTMVVVTH 211
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1444 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-24 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-27 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-20 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-17 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-16 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 7e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-19 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 9e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 9e-21 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-22 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-23 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-21 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-23 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-21 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-22 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-19 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-19 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 9e-22 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-18 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-18 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 6e-20 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 7e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-16 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-18 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 5e-18 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-18 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-14 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 7e-18 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 5e-17 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-13 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-05 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 0.001 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 5e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 6e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.001 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 0.002 | |
| d1gkya_ | 186 | c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac | 0.003 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.004 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 110 bits (276), Expect = 2e-27
Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 8/208 (3%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
L+G+S + G +T ++G +G+GK+TL++V++G + G + + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 992
Q +TV E+LL ++S K +I + E+VE I +
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 993 LPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
L LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 1048 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
G T + H+ + + D L++M G
Sbjct: 200 GITFLIIEHRLD-IVLNYIDHLYVMFNG 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 100 bits (249), Expect = 9e-24
Identities = 56/254 (22%), Positives = 90/254 (35%), Gaps = 35/254 (13%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
L VS + G +TL++GP SGK+TL+ + G L + GRV + D+ P
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 73
Query: 225 E----RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
Q + EMTV E L C G L + + E
Sbjct: 74 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE-------- 125
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
E L+ L L D G+ +SGG+ K V G ++
Sbjct: 126 -------------EMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMT 167
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400
+ MDE G+ I N + + G + + + D + ++ +
Sbjct: 168 NPKMIVMDEPIAGVAPGLAHDIFNHVLELK--AKGITFLIIEHRLDIVLNYIDHLYVMFN 225
Query: 401 GQIVYQGPRELVLE 414
GQI+ +G E ++
Sbjct: 226 GQIIAEGRGEEEIK 239
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 108 bits (272), Expect = 4e-27
Identities = 51/216 (23%), Positives = 100/216 (46%), Gaps = 12/216 (5%)
Query: 866 GVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISG 922
+ E+ + L ++ + G ++MG SG+GK+T+++++ + T G + NI +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 923 YPKKQETFARIS--GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL 980
+ T R G+ Q P +T E++ + + E R+ E +++
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 981 VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
EL+ + + LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AELEERFANHK----PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187
Query: 1041 VRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
++ + G+TVV H I++ + + +K G
Sbjct: 188 LKKLNEEDGKTVVVVTHD--INVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 88.7 bits (220), Expect = 4e-20
Identities = 47/257 (18%), Positives = 90/257 (35%), Gaps = 47/257 (18%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
++ + LK+V+ IK G ++GP SGK+T+L + + G V +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIK 68
Query: 219 MGEFVPERTA-------AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN 271
+ + ++ Q N I +T E + + G+
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAM------------ 116
Query: 272 EAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKR 331
G+E LK+ LE + +SGG+++R
Sbjct: 117 -------------------SGEERRKRALECLKMAELE----ERFANHKPNQLSGGQQQR 153
Query: 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL 391
V + + D+ + LDS T +I+ LK+ ++ G V+ ++
Sbjct: 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARF 211
Query: 392 FDDIILLSDGQIVYQGP 408
+ II L DG++ +
Sbjct: 212 GERIIYLKDGEVEREEK 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 108 bits (272), Expect = 6e-27
Identities = 44/203 (21%), Positives = 78/203 (38%), Gaps = 11/203 (5%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 932
+ G+ G + L+G +GAGKTT + ++G R G I N
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 992
+ P +TVYE+L+ A+ R E ++ LK ++ L G
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKE---GIKRDLEWIFSLFPRLKERLKQLGG 138
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
LS +++ L I L++ P ++ MDEP+ GL + V ++ G T++
Sbjct: 139 -----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 1053 CTIHQPGIDIFDAFDELFLMKRG 1075
++++ G
Sbjct: 194 LVEQNAL-GALKVAHYGYVLETG 215
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 81.5 bits (201), Expect = 2e-17
Identities = 46/251 (18%), Positives = 86/251 (34%), Gaps = 42/251 (16%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD-SSLKVSGRVTYNGHDMGEFV 223
+ +K + + G++ L+G +GKTT L A+AG + K+ + +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
A + + E+TV E L A + + R
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE------GIKRDLEWI---------- 122
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
+ L+ + G +SGGE++ + G ++
Sbjct: 123 ------------------FSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L MDE S GL ++ +++ GT ++ + Q A + +L GQI
Sbjct: 160 LLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQNALGALKVAHYGYVLETGQI 217
Query: 404 VYQGPRELVLE 414
V +G +L+
Sbjct: 218 VLEGKASELLD 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 107 bits (269), Expect = 1e-26
Identities = 56/270 (20%), Positives = 97/270 (35%), Gaps = 52/270 (19%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
T + ++ IK G +LLGP GKTT L +AG + + GR+ + D+ P
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPP 75
Query: 225 E-RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
+ R + + Q MTV E +AF + +
Sbjct: 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD------------------------ 111
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
E + + ++L +E + +SGG+R+RV +V
Sbjct: 112 ----------EIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPD 156
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L MDE + LD+ + +K+ + I + E + D I +++ GQ+
Sbjct: 157 VLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
Query: 404 VYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ G E + P VA F+
Sbjct: 216 LQIGSPT---EVYLR-----PNSVFVATFI 237
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 104 bits (261), Expect = 2e-25
Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 17/210 (8%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 927
+N L+ + G L+G SG GKTT + +++G T G I
Sbjct: 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTY 72
Query: 928 -ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 986
R Q+ P +TVYE++ + ++ + + + EL++++ L
Sbjct: 73 LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEEL 129
Query: 987 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1045
+ + LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 130 LNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 1046 DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
T + H + D + +M RG
Sbjct: 185 KLKVTTIYVTHDQV-EAMTMGDRIAVMNRG 213
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 98.8 bits (246), Expect = 6e-24
Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 17/188 (9%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET 929
DK VL ++ G + G +G GKTTL+ +S + G I +G P +
Sbjct: 13 DKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK-- 67
Query: 930 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 989
+ + I ++V + L A L K I + +E VE+ L +
Sbjct: 68 VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK 122
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1048
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 123 ------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 176
Query: 1049 RTVVCTIH 1056
++ +
Sbjct: 177 IVIISSRE 184
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 76.5 bits (188), Expect = 3e-16
Identities = 32/215 (14%), Positives = 72/215 (33%), Gaps = 48/215 (22%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+L+ ++ I+ G + GP GKTTLL ++ L G + YNG + + +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--K 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
++ + +++V + L A GV + +
Sbjct: 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------------- 110
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALAL 345
L+ + + + +S G +RV ++ A
Sbjct: 111 -----------------LESVEVLDLKK------KLGELSQGTIRRVQLASTLLVNAEIY 147
Query: 346 FMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS 380
+D+ +D + +++ + + + G +IS
Sbjct: 148 VLDDPVVAIDEDSKHKVLKSILEILK-EKGIVIIS 181
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 100 bits (250), Expect = 7e-24
Identities = 46/215 (21%), Positives = 88/215 (40%), Gaps = 21/215 (9%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
L G+S R G + +++G SG+GK+T + ++ + + G I I+ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 932 RIS-----------GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL 980
Q+ +TV E+++ A +++ + R+ + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGLSKHDARER-ALKYLAK 135
Query: 981 VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
V + Q LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 VGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 1041 VRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
++ + G+T+V H+ G + + +G
Sbjct: 192 MQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 88.0 bits (218), Expect = 1e-19
Identities = 50/286 (17%), Positives = 98/286 (34%), Gaps = 66/286 (23%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
+LK VS + G + ++G SGK+T L + S G + NG ++
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRD 71
Query: 225 E----------------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELAR 268
+ + QH N MTV E + + S+++
Sbjct: 72 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHD------- 124
Query: 269 RENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328
+ A + YL +G++ A + +SGG+
Sbjct: 125 ----------------ARERALK----------YLAKVGIDERAQ----GKYPVHLSGGQ 154
Query: 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388
++RV+ + L DE ++ LD +++ ++Q G ++ +
Sbjct: 155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGFA 212
Query: 389 YDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQ 434
+ +I L G+I +G E + F + P+ + FL+
Sbjct: 213 RHVSSHVIFLHQGKIEEEGDPE---QVFGN-----PQSPRLQQFLK 250
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 99.3 bits (247), Expect = 9e-24
Identities = 50/208 (24%), Positives = 88/208 (42%), Gaps = 13/208 (6%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 927
K +L G+S G + L+G +GAGKTT + ++S + + G +T + ++
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 987
++ Y + + E L + A S + +E E+ L I
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKI 127
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
+ V S S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1048 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
G T++ + H ++ D + L+ G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHNG 209
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 90.8 bits (225), Expect = 9e-21
Identities = 58/276 (21%), Positives = 95/276 (34%), Gaps = 56/276 (20%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
ILK +S I+ G + L+GP +GKTT L ++ + S SG VT G ++ E
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 71
Query: 225 E--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
E + +Y+ + M E L F A S
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS----------------------- 108
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
E + + ++ GL V S G +++ ++
Sbjct: 109 -----------EIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNP 152
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+DE ++GLD ++ LKQ G ++ E L D I L+ +G
Sbjct: 153 RLAILDEPTSGLDVLNAREVRKILKQAS--QEGLTILVSSHNMLEVEFLCDRIALIHNGT 210
Query: 403 IVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEVT 437
IV G EL + K + + + +EV
Sbjct: 211 IVETGTVEEL---------KERYKAQNIEEVFEEVV 237
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 98.8 bits (246), Expect = 2e-23
Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 14/206 (6%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
LN +S G + ++G SGAGK+TL+ ++ R T G + ++ + + T A
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 932 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
R G Q+ TV+ ++ L P+ + + R + E++ LV L S
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELLSLVGLGDKHDSY 137
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1049
S LS Q++R+ IA L +NP ++ DE TS LD ++ +++ G
Sbjct: 138 P-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 1050 TVVCTIHQPGIDIFDAFDELFLMKRG 1075
T++ H+ + + D + ++ G
Sbjct: 193 TILLITHEMDV-VKRICDCVAVISNG 217
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 95.0 bits (236), Expect = 3e-22
Identities = 52/280 (18%), Positives = 95/280 (33%), Gaps = 57/280 (20%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
+ + L +VS + G++ ++G +GK+TL+ + + G V +G +
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 68
Query: 219 MGEFVPERTA------AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENE 272
+ I QH N + TV +A E+ RR E
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-----EVKRRVTE 123
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRV 332
L ++GL D+ + +SGG+++RV
Sbjct: 124 L-----------------------------LSLVGLGDKHDSYPSN-----LSGGQKQRV 149
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392
+ L DE ++ LD +TT I+ LK G ++ + +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINR-RLGLTILLITHEMDVVKRIC 208
Query: 393 DDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADF 432
D + ++S+G+++ Q E F PK F
Sbjct: 209 DCVAVISNGELIEQDTVS---EVFSH-----PKTPLAQKF 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 99.2 bits (247), Expect = 3e-23
Identities = 37/201 (18%), Positives = 82/201 (40%), Gaps = 19/201 (9%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 934
L ++ G + A+ G +G+GKT+L+ ++ G G I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 935 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLP 994
+C Q P T+ E++++ E ++ + ++ + +++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1054
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 1055 IHQPGIDIFDAFDELFLMKRG 1075
+ ++ D++ ++ +G
Sbjct: 215 TSK--MEHLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 93.4 bits (232), Expect = 3e-21
Identities = 49/281 (17%), Positives = 95/281 (33%), Gaps = 60/281 (21%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+LK+++ I+ G M + G SGKT+LL+ + G+L++S G + ++G
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGRV-------- 99
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
++ SQ + I T++E + F + +
Sbjct: 100 --SFCSQ-FSWIMPGTIKENIIFGVSYDE-----YRYKSVVKACQLQ------------- 138
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
+ +T++G+ + +SGG+R R++ + A
Sbjct: 139 ----------------QDITKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYL 181
Query: 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+D LD T Q+ + N +++ E D I++L G +
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS---KMEHLRKADKILILHQGSSYFY 238
Query: 407 G-PREL-------VLEFFESMGFKCPKRKGVADFLQEVTSR 439
G EL + F + + L E R
Sbjct: 239 GTFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTETLRR 279
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 98.3 bits (245), Expect = 3e-23
Identities = 53/270 (19%), Positives = 100/270 (37%), Gaps = 50/270 (18%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
+ + F Y + ILKD++ I+ G +G GK+TL+ + D +
Sbjct: 19 IDHVSFQY----NDNEAP--ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT- 71
Query: 207 KVSGRVTYNGHDMGEFVPERTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRYELLT 264
SG++ +GH++ +F+ I Q DN + TV+E + G
Sbjct: 72 --SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDE 122
Query: 265 ELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324
E+ A ++ L DT VG E +
Sbjct: 123 EVVEAAKMANAHDF--------------------------IMNLPQGYDTEVG-ERGVKL 155
Query: 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQP 384
SGG+++R++ + + L +DE ++ LD + I L ++ + ++
Sbjct: 156 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV---LSKDRTTL-IVAH 211
Query: 385 APETYDLFDDIILLSDGQIVYQGPRELVLE 414
T D I+++ +G IV G ++
Sbjct: 212 RLSTITHADKIVVIENGHIVETGTHRELIA 241
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 93.7 bits (233), Expect = 1e-21
Identities = 53/244 (21%), Positives = 100/244 (40%), Gaps = 33/244 (13%)
Query: 840 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT 899
+ + + D V + + +++ +L ++ + G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 900 TLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCE--QNDIHSPFVTVYESLLYSA 957
TL++++ +G I I G+ K + Q D TV E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG- 115
Query: 958 WLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-VGLPGVSG-----LSTEQRKRLTIAV 1011
P D E + E ++ I +L G G LS Q++RL+IA
Sbjct: 116 ---RPTATDEE-----VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 167
Query: 1012 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1071
+ NP I+ +DE TS LD + +I+ + + RT + H+ + D++ +
Sbjct: 168 IFLNNPPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHR--LSTITHADKIVV 224
Query: 1072 MKRG 1075
++ G
Sbjct: 225 IENG 228
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.7 bits (238), Expect = 2e-22
Identities = 53/271 (19%), Positives = 109/271 (40%), Gaps = 48/271 (17%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F+D+ F Y P+R +L+ ++ ++PG +T L+GP SGK+T+ L +
Sbjct: 14 FQDVSFAY----PNRPDV-LVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT- 67
Query: 207 KVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL 263
G++ +G + ++ R A + Q + + +++E +A+
Sbjct: 68 --GGQLLLDGKPLPQYEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY-------------- 110
Query: 264 TELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323
G+ P ++ A G + GL DT V + +
Sbjct: 111 ----------GLTQKPTMEEITAAAVKSGAH--------SFISGLPQGYDTEVDEAGSQ- 151
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383
+SGG+R+ V ++ L +D+ ++ LD+++ Q+ L + S + ++
Sbjct: 152 LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH 211
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
+ D I+ L G I G + ++E
Sbjct: 212 --LSLVEQADHILFLEGGAIREGGTHQQLME 240
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.5 bits (214), Expect = 3e-19
Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 11/205 (5%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
L GL+ RPG +TAL+G +G+GK+T+ +L + TGG + + Y +
Sbjct: 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY--LH 87
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 991
R Q ++ E++ Y L P ++ T + P
Sbjct: 88 RQVAAVGQEPQVFGR-SLQENIAY--GLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTE 144
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRT 1050
S LS QR+ + +A L+ P ++ +D+ TS LDA + V + + + + R+
Sbjct: 145 VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 204
Query: 1051 VVCTIHQPGIDIFDAFDELFLMKRG 1075
V+ + + A D + ++ G
Sbjct: 205 VLLITQHLSL-VEQA-DHILFLEGG 227
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 95.3 bits (237), Expect = 3e-22
Identities = 40/205 (19%), Positives = 83/205 (40%), Gaps = 13/205 (6%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFA 931
L ++ G AL+G SG+GK+T+ +++ G+I + G+ ++ +
Sbjct: 31 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLR 88
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSL 990
QN +++ R + M+ + + ++
Sbjct: 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR---MAYAMDFINKMDNGLDTI 145
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
+G G LS QR+R+ IA L+ + I+ +DE TS LD + + + + RT
Sbjct: 146 IGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRT 203
Query: 1051 VVCTIHQPGIDIFDAFDELFLMKRG 1075
+ H+ + + DE+ +++ G
Sbjct: 204 SLVIAHR--LSTIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 86.1 bits (213), Expect = 5e-19
Identities = 51/268 (19%), Positives = 101/268 (37%), Gaps = 45/268 (16%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F ++ F Y P R+ L++++ I G+ L+G SGK+T+ + D
Sbjct: 16 FRNVTFTY----PGREVP--ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID- 68
Query: 207 KVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTEL 266
G + +GHD+ E+ ++ V L +
Sbjct: 69 --EGHILMDGHDLREYTLASLRNQVAL----------------------VSQNVHLFNDT 104
Query: 267 ARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISG 326
+ + +A + A + GL DT++G E +SG
Sbjct: 105 VANNIAYARTEEYSREQIEEAA----RMAYAMDFINKMDNGL----DTIIG-ENGVLLSG 155
Query: 327 GERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP 386
G+R+R+ ++ + L +DE ++ LD+ + I L + + + ++
Sbjct: 156 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE---LQKNRTSL-VIAHRL 211
Query: 387 ETYDLFDDIILLSDGQIVYQGPRELVLE 414
T + D+I+++ DG IV +G +L
Sbjct: 212 STIEQADEIVVVEDGIIVERGTHSELLA 239
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 93.5 bits (232), Expect = 9e-22
Identities = 44/211 (20%), Positives = 78/211 (36%), Gaps = 27/211 (12%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP---KKQETFA 931
L LSG R G + L+G +GAGK+TL+ ++G +G G+I +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 991
Y Q V+ L + TR + +V + L +
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRST 123
Query: 992 GLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 1045 VDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
G +V + H +L+K G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLKGG 208
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 82.7 bits (204), Expect = 4e-18
Identities = 49/259 (18%), Positives = 80/259 (30%), Gaps = 60/259 (23%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T L +SG ++ G + L+GP +GK+TLL +AG G + + G + +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+ A AY+SQ V L
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQH------------------------------ 98
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ + + L L+ +SGGE +RV +++
Sbjct: 99 ---------DKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 144
Query: 343 LA-------LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
L +DE LD + + L G A++ T
Sbjct: 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRA 202
Query: 396 ILLSDGQIVYQGPRELVLE 414
LL G+++ G RE VL
Sbjct: 203 WLLKGGKMLASGRREEVLT 221
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 91.9 bits (228), Expect = 4e-21
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 12/210 (5%)
Query: 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP---K 925
D V+L+ ++ + + G + ++G SG+GK+TL ++ + I G+
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--VLIDGHDLALA 70
Query: 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 985
R G Q D ++ +++ + +V + + + +
Sbjct: 71 DPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAK---LAGAHDFISELR 126
Query: 986 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
+ + +GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 185
Query: 1046 DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
GRTV+ H+ + +A D + +M++G
Sbjct: 186 CKGRTVIIIAHRLST-VKNA-DRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 83.0 bits (205), Expect = 4e-18
Identities = 57/271 (21%), Positives = 100/271 (36%), Gaps = 52/271 (19%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F +I F Y + IL +++ IK G + ++G SGK+TL +
Sbjct: 4 FRNIRFRY------KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE- 56
Query: 207 KVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL 263
+G+V +GHD+ P R + Q DN + ++ + ++
Sbjct: 57 --NGQVLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISL-------------- 99
Query: 264 TELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323
+P + V A + A + + E G
Sbjct: 100 -------------ANPGMSVEKVIYAAKLAGA-------HDFISELREGYNTIVGEQGAG 139
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383
+SGG+R+R+ +V L DE ++ LD + I+ + + I G VI +
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAH 196
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
T D II++ G+IV QG + +L
Sbjct: 197 -RLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 88.5 bits (219), Expect = 6e-20
Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 13/208 (6%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET 929
++V+ ++ G +G SG GK+TL+ +++G +T + I
Sbjct: 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTP 68
Query: 930 FARIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 988
A G Q+ P ++V E++ + L + R + +V E+++L L+
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLD 125
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1047
LS QR+R+ I LVA PS+ +DEP S LDA + +
Sbjct: 126 RK-----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180
Query: 1048 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
GRT++ H D++ ++ G
Sbjct: 181 GRTMIYVTHDQVE-AMTLADKIVVLDAG 207
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 82.3 bits (203), Expect = 7e-18
Identities = 53/271 (19%), Positives = 91/271 (33%), Gaps = 52/271 (19%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV 223
+ + KD++ I G + +GP GK+TLL +AG + SG + M +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 224 PERTA-AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
P + Q ++V E ++F + G
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE----------------------- 105
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
N + +VL L D +SGG+R+RV G +V
Sbjct: 106 -----------VINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+DE + LD++ Q+ + + T + E L D I++L G+
Sbjct: 150 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGR 208
Query: 403 IVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ G E + P + VA F+
Sbjct: 209 VAQVGKPL---ELYHY-----PADRFVAGFI 231
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 83.8 bits (207), Expect = 2e-18
Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 15/212 (7%)
Query: 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKK 926
++ + +S + G L+G SG GKTT + +++G + G I G+ ++ K
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 927 QETFARISG--YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 984
+ Q+ P +TVY+++ + LR P + + R + EV EL+ L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLT 130
Query: 985 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
L+ LS QR+R+ + +V P + MDEP S LDA+ + ++
Sbjct: 131 ELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185
Query: 1045 V-DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
G T + H + D + +M RG
Sbjct: 186 QRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRG 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 77.3 bits (190), Expect = 3e-16
Identities = 52/270 (19%), Positives = 95/270 (35%), Gaps = 44/270 (16%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV 223
+T ++++S +K G +LLGP GKTT L +AG + S G++ + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPE 71
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
+ + + Y L + +N I
Sbjct: 72 KGIFVPPKDRDIAMVFQS------------------YALYPHMTVYDN---------IAF 104
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
+K QE + ++LGL + + +SGG+R+RV G +V
Sbjct: 105 PLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQ 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
MDE + LD + + + + G I + E + D I +++ G +
Sbjct: 160 VFLMDEPLSNLD-AKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL 218
Query: 404 VYQGPRELVLEFFESMGFKCPKRKGVADFL 433
G + E ++ P VA F+
Sbjct: 219 QQVGSPD---EVYDK-----PANTFVAGFI 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 83.8 bits (207), Expect = 3e-18
Identities = 51/251 (20%), Positives = 84/251 (33%), Gaps = 42/251 (16%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL+D+S +P + GP GK+T+ L + +G +T +G + E
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 226 RTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
+ I D+ I T+RE L + + +LA + PD
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL--- 129
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
+T VG E ISGG+R+R+ +
Sbjct: 130 -----------------------------NTEVG-ERGVKISGGQRQRLAIARAFLRNPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE + LDS + + L + G + + T D I + GQI
Sbjct: 160 ILMLDEATASLDSESESMVQKALDS---LMKGRTTLVIAH-RLSTIVDADKIYFIEKGQI 215
Query: 404 VYQGPRELVLE 414
G ++
Sbjct: 216 TGSGKHNELVA 226
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 83.0 bits (205), Expect = 5e-18
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 15/206 (7%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 931
L +S +P + A G SG GK+T+ +L + T G IT I + +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN--WR 75
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEV--MELVELKPLIQS 989
G+ Q+ T+ E+L Y L + E ++ VE P +
Sbjct: 76 SQIGFVSQDSAIMAG-TIRENLTY----GLEGDYTDEDLWQVLDLAFARSFVENMPDQLN 130
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
+S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + + GR
Sbjct: 131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-LMKGR 189
Query: 1050 TVVCTIHQPGIDIFDAFDELFLMKRG 1075
T + H+ I DA D+++ +++G
Sbjct: 190 TTLVIAHRLST-IVDA-DKIYFIEKG 213
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 82.0 bits (202), Expect = 7e-18
Identities = 59/267 (22%), Positives = 103/267 (38%), Gaps = 55/267 (20%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER- 226
L ++S ++ G ++LGP +GKT L +AG SGR+ +G D+ + PE+
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
A++ Q+ + M V++ L F R + + +R +
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP--------KRVLDT------------- 111
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
+ L +E D +SGGE++RV +V L
Sbjct: 112 ----------------ARDLKIEHLL-----DRNPLTLSGGEQQRVALARALVTNPKILL 150
Query: 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+DE + LD T + + +H + V+ + E + D I ++ DG+++
Sbjct: 151 LDEPLSALD-PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209
Query: 407 GPRELVLEFFESMGFKCPKRKGVADFL 433
G E E FE P VA F+
Sbjct: 210 GKPE---EIFEK-----PVEGRVASFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 71.2 bits (174), Expect = 4e-14
Identities = 42/203 (20%), Positives = 77/203 (37%), Gaps = 16/203 (7%)
Query: 875 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG-YPKKQETFARI 933
L+ LS G ++G +GAGKT +++++G I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 934 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 993
+ QN P + V ++L + ++ + + V++ + L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK---------KIKDPKRVLDTARDLKIEHLLDRN 124
Query: 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1052
P LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 P--LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 1053 CTIHQPGIDIFDAFDELFLMKRG 1075
H + D + ++ G
Sbjct: 183 HITHDQT-EARIMADRIAVVMDG 204
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 82.4 bits (203), Expect = 7e-18
Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 14/210 (6%)
Query: 871 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQE 928
K+V L+ ++ G ++G SGAGKTT M +++G + G + + + K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 929 T--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 986
R G Q P +T +E++ + ++ E + +EEV +++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHV 133
Query: 987 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1045
+ LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1046 DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075
G T++ H P DIF D + ++ +G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVLVKG 217
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 80.1 bits (197), Expect = 5e-17
Identities = 49/279 (17%), Positives = 96/279 (34%), Gaps = 57/279 (20%)
Query: 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG 220
+K + L +V+ I+ G +LGP +GKTT + +AG S +G + ++ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 221 EFVPE------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
R + Q +T E +AF +
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEE-------------- 116
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
++ E K+L + + R +SG +++RV
Sbjct: 117 ----------IRKRVEE----------VAKILDIHHVLNHF-----PRELSGAQQQRVAL 151
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394
+V L +DE + LD+ +K+ T ++ PA + + + D
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADR 210
Query: 395 IILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ +L G++V G E + +++ P VA +
Sbjct: 211 VGVLVKGKLVQVGKPE---DLYDN-----PVSIQVASLI 241
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 72.7 bits (178), Expect = 1e-14
Identities = 54/265 (20%), Positives = 90/265 (33%), Gaps = 56/265 (21%)
Query: 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTA- 228
+V +LLGP +GK+ L +AG + G V NG D+ PER
Sbjct: 17 NVD-FEMGRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGI 72
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAI 288
++ Q ++V +A+ R R + E+
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREM---------------------- 110
Query: 289 ATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMD 348
E + D +SGGER+RV +V L +D
Sbjct: 111 -------------------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD 151
Query: 349 EISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408
E + +D T + + V ++ + E L D++ ++ +G+IV +G
Sbjct: 152 EPLSAVDLKTKGVL-MEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210
Query: 409 RELVLEFFESMGFKCPKRKGVADFL 433
+ E F K VA+FL
Sbjct: 211 LK---ELFS------AKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 68.1 bits (166), Expect = 6e-13
Identities = 48/234 (20%), Positives = 98/234 (41%), Gaps = 27/234 (11%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQN 940
L+G +GAGK+ +++++G + G + I+ P ++ R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 941 DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000
P ++VY ++ Y V+ R + E+ E + + L+ + LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRK-----PARLS 128
Query: 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPG 1059
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1060 IDIFDAFDELFLMKRGG-------QEIYVGPLGRHSCQLISYFEAIPGVEKIKD 1106
+ DE+ +M G +E++ + +S + V KI D
Sbjct: 189 -EAAMLADEVAVMLNGRIVEKGKLKELF-SAKNGEVAEFLSARNLLLKVSKILD 240
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 45.4 bits (106), Expect = 1e-05
Identities = 23/201 (11%), Positives = 45/201 (22%), Gaps = 42/201 (20%)
Query: 889 ALMGVSGAGKTTLMDVLSG---RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP 945
+ G G GKTTL+ + ++ G+ T + K+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR------------------- 44
Query: 946 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 1005
+ + + + + ++
Sbjct: 45 ------------TGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----QYFEELAIPIL 88
Query: 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDA 1065
+I +DE + D VV TI +
Sbjct: 89 ERAYREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL-- 145
Query: 1066 FDELFLMKRGGQEIYVGPLGR 1086
E+ + G I + P R
Sbjct: 146 VKEIRRLP-GAVLIELTPENR 165
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 39.2 bits (90), Expect = 0.001
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 182 LLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221
++ G P GKTTL+ + +L + E
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPE 40
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 5e-04
Identities = 27/186 (14%), Positives = 56/186 (30%), Gaps = 7/186 (3%)
Query: 172 SGIIKPGRMTLLLGPPASGKTTLLL--ALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAA 229
G I+ G +T + G +GKT + A+ +L G F PER A
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 76
Query: 230 YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIA 289
++ ++ A + + + A + D +Y +
Sbjct: 77 VAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS 136
Query: 290 TEGQEANVITDY-----YLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
G+ + L L E ++ ++++ + G + + G +A
Sbjct: 137 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 196
Query: 345 LFMDEI 350
Sbjct: 197 HASTTR 202
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 40.0 bits (92), Expect = 6e-04
Identities = 16/137 (11%), Positives = 36/137 (26%), Gaps = 3/137 (2%)
Query: 185 GPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244
+GKTTLL L L + R H + ++ + T+
Sbjct: 9 AWSGTGKTTLLKKLIPALCAR---GIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIV 65
Query: 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304
+ A EL + + ++ + + + +
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPE 125
Query: 305 VLGLEVCADTMVGDEMI 321
L ++ + D +
Sbjct: 126 ELVIDRHVIAVASDVPL 142
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 0.001
Identities = 20/152 (13%), Positives = 42/152 (27%), Gaps = 22/152 (14%)
Query: 939 QNDIHSPFVTVYESLL-----------YSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 987
+ + +Y L +A L + E + + L K +
Sbjct: 272 FDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDME 331
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
G V+ L+ L A+ +DE + LD + +R +
Sbjct: 332 YLSGGEKTVAALA------LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP 385
Query: 1048 GRTVVCTIHQPGIDIFDAFDELF---LMKRGG 1076
+ + +F+ D L ++
Sbjct: 386 DLQFIVISLKNT--MFEKSDALVGVYRQQQEN 415
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.2 bits (90), Expect = 0.002
Identities = 10/102 (9%), Positives = 29/102 (28%), Gaps = 1/102 (0%)
Query: 889 ALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 948
+ G +GKT+L+ +L+ + + + + +
Sbjct: 7 IIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65
Query: 949 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 990
++ + + K LV++ + +S
Sbjct: 66 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESS 107
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.4 bits (88), Expect = 0.003
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 179 RMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
R ++ GP +GK+TLL L + S S T GE +
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKD 49
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 38.5 bits (88), Expect = 0.004
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAGKL-------DSSLKVSGRVTYNGHDM-GEF 222
+ ++ G + L+ P +GK+ L L LA ++ + +G V Y +
Sbjct: 23 LPNMV-AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTA 81
Query: 223 VPERTAAYISQHDNH 237
+ R A +
Sbjct: 82 IHHRLHALGAHLSAE 96
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1444 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.83 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.73 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.66 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.5 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.37 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.32 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.14 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.95 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.94 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.91 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.49 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.03 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.97 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.89 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.84 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.73 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.73 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.73 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.66 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.61 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.48 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.28 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.13 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.09 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.05 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.01 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.98 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.95 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.95 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.94 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.84 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.84 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.83 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.81 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.81 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.8 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.8 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.8 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.78 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.76 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.74 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.73 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.7 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.69 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.66 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.63 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.62 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.61 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.61 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.6 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.57 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.55 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.54 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.51 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.45 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.45 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.44 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.43 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.37 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.37 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.37 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.35 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.35 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.33 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.33 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.32 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.29 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.29 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.29 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.28 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.24 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.24 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.22 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.22 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.22 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.21 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.2 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.17 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.17 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.16 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.15 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.12 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.12 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.11 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.11 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.1 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.09 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.09 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.09 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.09 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.07 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.06 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.04 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.02 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.99 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.97 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.97 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.96 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.95 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.95 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.93 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.92 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.91 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.91 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.89 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.87 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.86 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.85 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.85 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.83 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.82 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.82 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.81 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.81 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.81 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.8 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.8 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.79 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.77 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.75 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.74 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.73 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.72 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.72 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.7 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.7 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.7 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.64 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.64 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.61 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.6 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.56 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.55 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.55 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.54 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.53 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.53 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.53 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.53 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.51 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.5 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.5 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.48 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.47 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.46 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.45 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.44 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.41 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.4 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.4 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.39 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.37 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.37 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.35 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.33 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.33 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.31 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.29 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.27 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.26 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.25 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.23 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.17 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.09 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.08 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.04 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.04 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.97 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.95 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.91 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.91 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.91 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.9 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.89 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.86 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.83 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.82 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.82 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.82 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 94.81 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.8 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.79 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.72 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.68 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.68 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.67 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.67 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.63 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.58 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.58 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.56 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.55 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.54 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.52 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.52 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.51 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.5 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.45 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.43 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.4 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.35 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.35 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.34 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.33 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.33 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.31 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.3 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.3 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.29 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.26 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.26 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.21 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.21 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.21 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.2 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.19 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.18 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.18 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.18 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.14 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.11 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.09 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.08 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.07 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.02 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.02 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.93 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.93 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 93.93 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.91 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.91 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.89 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.88 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.87 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.86 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.79 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.75 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.72 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.7 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.69 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.68 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.68 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.67 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.66 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.66 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.64 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.6 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.55 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.5 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.47 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.46 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.45 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.41 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.38 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.37 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.37 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.36 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.34 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.34 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.34 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.32 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.29 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.29 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.27 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.23 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.23 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.23 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.18 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.17 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.13 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.1 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.09 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.06 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.06 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.06 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.05 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.04 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.99 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 92.97 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.89 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.88 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.79 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.78 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.76 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.69 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.65 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 92.65 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.63 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.61 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 92.58 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.58 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 92.57 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.54 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.52 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 92.5 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.49 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.48 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.45 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.43 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.4 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.35 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.32 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.31 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.27 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.25 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.23 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.23 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 92.19 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.19 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.18 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.18 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.18 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.17 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.05 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.04 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.04 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.91 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.86 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.86 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.81 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.79 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.78 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 91.69 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 91.68 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.66 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.63 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.61 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.57 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.56 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.56 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.55 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.5 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.49 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.48 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.48 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 91.47 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.46 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 91.46 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.44 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.44 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.41 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.35 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.35 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.35 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.34 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.28 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.23 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 91.17 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.16 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 91.15 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 91.14 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.11 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.06 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.06 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.03 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 90.92 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 90.85 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.82 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.8 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.79 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.78 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 90.76 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 90.72 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.72 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 90.69 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.66 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.64 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 90.6 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.59 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 90.58 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 90.49 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 90.43 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.4 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.36 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.32 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 90.26 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.25 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.09 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 90.07 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 89.99 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.98 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.97 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 89.83 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 89.82 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 89.8 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 89.76 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 89.75 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.69 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 89.46 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 89.41 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.3 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 89.21 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 89.0 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 88.88 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 88.81 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 88.81 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.79 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 88.62 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 88.59 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 88.57 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 88.52 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.45 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 88.4 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 88.36 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 88.34 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 87.78 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.75 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 87.75 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.65 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 87.61 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 87.4 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.32 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.23 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 87.22 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 87.18 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 87.06 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 86.54 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.42 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 86.34 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.3 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 86.22 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.05 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 86.04 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.99 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 85.55 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.48 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 85.34 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 85.2 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 85.19 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.95 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 84.81 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 84.63 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 84.48 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 84.41 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 84.4 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 84.31 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 84.2 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 83.96 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 83.75 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 83.73 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 83.28 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.24 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.6 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.48 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 81.32 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 80.91 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 80.11 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=332.05 Aligned_cols=207 Identities=24% Similarity=0.352 Sum_probs=139.2
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCH
Q ss_conf 137521056884884999976999968999999846999999801199997841899875-5218997478887899999
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1444)
Q Consensus 165 ~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~r~~aYv~Q~D~~~~~lTV 243 (1444)
.++|+|+|+.+++||+++|+|||||||||||++|+|..+|+ +|+|.+||+++.+..+ +|.++||+|++.+++.+||
T Consensus 13 ~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv 89 (232)
T d2awna2 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 89 (232)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC------
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHH
T ss_conf 99981117788699899999899982999999996587888---888999999778886444322234334202643337
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999865611788335676898898664099999997899999873223355799999999199432344344755655
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1444)
Q Consensus 244 rEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rg 323 (1444)
+||+.|+.++++.. +. +.+..++.+++.+||++.+|..+. .
T Consensus 90 ~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~l~~~~~~~~~-----~ 130 (232)
T d2awna2 90 AENMSFGLKLAGAK----------KE------------------------VINQRVNQVAEVLQLAHLLDRKPK-----A 130 (232)
T ss_dssp -------------------------C------------------------HHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHCCCC----------HH------------------------HHHHHHHHHHHHCCCHHHHHCCHH-----H
T ss_conf 88978999875998----------89------------------------999999999975788656648965-----6
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEE
Q ss_conf 66445457999999724985351335998999898999999999987704997999983590048831275999729829
Q 000524 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1444)
Q Consensus 324 LSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~IilL~~G~i 403 (1444)
|||||||||+||++|+.+|++++|||||+|||+.++.+|++.|+++.+..+.|+|+ ++|...++..++|+|++|.+|++
T Consensus 131 LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~-vTHd~~~a~~~~dri~vm~~G~i 209 (232)
T d2awna2 131 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY-VTHDQVEAMTLADKIVVLDAGRV 209 (232)
T ss_dssp ---------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE-EESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEE
T ss_conf 99999999999999703998899758887889889989999999998742987999-94899999996999999979999
Q ss_pred EEECCHHHHHH
Q ss_conf 99618555999
Q 000524 404 VYQGPRELVLE 414 (1444)
Q Consensus 404 vy~Gp~~~~~~ 414 (1444)
+.+|+.+++.+
T Consensus 210 v~~G~~~el~~ 220 (232)
T d2awna2 210 AQVGKPLELYH 220 (232)
T ss_dssp EEEECHHHHHH
T ss_pred EEEECHHHHHH
T ss_conf 99808999973
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=325.87 Aligned_cols=206 Identities=25% Similarity=0.356 Sum_probs=121.5
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCCH
Q ss_conf 1375210568848849999769999689999998469999998011999978418998755-218997478887899999
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEMTV 243 (1444)
Q Consensus 165 ~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~-r~~aYv~Q~D~~~~~lTV 243 (1444)
..+|+|||+.+++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++....++ |.++||+|+..+++.+||
T Consensus 19 ~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 95 (239)
T d1v43a3 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95 (239)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHH
T ss_conf 99981306788799899999999982999999997589998---787999164135477000158998003353422209
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999865611788335676898898664099999997899999873223355799999999199432344344755655
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1444)
Q Consensus 244 rEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rg 323 (1444)
+||+.|.+++++... . +....++.+++.+||++.+|..+ ..
T Consensus 96 ~enl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (239)
T d1v43a3 96 YENIAFPLKIKKFPK----------D------------------------EIDKRVRWAAELLQIEELLNRYP-----AQ 136 (239)
T ss_dssp HHHHHTTCC--CCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSCT-----TT
T ss_pred HHHHHHHHHHCCCCH----------H------------------------HHHHHHHHHHHHCCCHHHHCCCH-----HH
T ss_conf 999999998739999----------9------------------------99999999998759855660995-----46
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEE
Q ss_conf 66445457999999724985351335998999898999999999987704997999983590048831275999729829
Q 000524 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1444)
Q Consensus 324 LSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~IilL~~G~i 403 (1444)
|||||||||+||++|+.+|++++|||||+|||+.++.+|++.|+++.+..+.|+++ ++|...++..++|+|++|.+|++
T Consensus 137 LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~-vTHd~~~a~~~~dri~vm~~G~i 215 (239)
T d1v43a3 137 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY-VTHDQVEAMTMGDRIAVMNRGQL 215 (239)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEE
T ss_conf 99999889999766404998243068866689899989999999998731980799-94899999986999999989999
Q ss_pred EEECCHHHHH
Q ss_conf 9961855599
Q 000524 404 VYQGPRELVL 413 (1444)
Q Consensus 404 vy~Gp~~~~~ 413 (1444)
+.+|+.+++.
T Consensus 216 v~~G~~~el~ 225 (239)
T d1v43a3 216 LQIGSPTEVY 225 (239)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
T ss_conf 9985999998
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=324.02 Aligned_cols=214 Identities=25% Similarity=0.346 Sum_probs=146.1
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 24883116566144023210544785488450178772891999965799955789964518978963799999959027
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.++|++.++. ...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred CEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 189986999989-------------9999856066886998999999999809999999964878--8989899999980
Q ss_pred CCC-------CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 811-------2232589970489889987587999998771199999988999999999999399411101126998876
Q 000524 926 KQE-------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 998 (1444)
Q Consensus 926 ~~~-------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~g 998 (1444)
... ..++.+|||+|++.++|.+||+|++.|...++ ..+.++.+++++++++.++|.+..+..+ ..
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HH
T ss_conf 356644424532255120022122231011667633068772---9998999999999998759966762993-----34
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCE
Q ss_conf 7998888999999995199778994999999999999999999999848-988999954887789973065879925949
Q 000524 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 999 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~i~ll~~gG~ 1077 (1444)
||||||||++||++|+.+|++|+|||||+|||+.++..+++.++++.+. |.|||+++|+.. ++...+|++++|.+ |+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CE
T ss_conf 99999999999999826998898258876569899989999999998636988999959999-99996999999989-99
Q ss_pred EEEECCC
Q ss_conf 9998489
Q 000524 1078 EIYVGPL 1084 (1444)
Q Consensus 1078 ~vy~G~~ 1084 (1444)
++..|++
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEECCH
T ss_conf 9998599
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=325.12 Aligned_cols=207 Identities=26% Similarity=0.356 Sum_probs=181.7
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCC------C-CCEEEEECCCCCC
Q ss_conf 13752105688488499997699996899999984699999980119999784189987------5-5218997478887
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV------P-ERTAAYISQHDNH 237 (1444)
Q Consensus 165 ~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~-~r~~aYv~Q~D~~ 237 (1444)
..+|+|+|+.+++||+++|+||||||||||+++|+|..+|+ +|+|.+||.++.... + +|.++||+|++.+
T Consensus 16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L 92 (240)
T d1g2912 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHH
T ss_conf 99985606688699899999999980999999996487889---898999999803566444245322551200221222
Q ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 89999999999865611788335676898898664099999997899999873223355799999999199432344344
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1444)
Q Consensus 238 ~~~lTVrEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~VG 317 (1444)
+|.+||+||+.|..+.++... . +...+++.+++.+||++.+|..++
T Consensus 93 ~~~ltV~eni~~~~~~~~~~~----------~------------------------e~~~~v~~~l~~~~l~~~~~~~p~ 138 (240)
T d1g2912 93 YPHMTVYDNIAFPLKLRKVPR----------Q------------------------EIDQRVREVAELLGLTELLNRKPR 138 (240)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------H------------------------HHHHHHHHHHHHHTCGGGTTCCGG
T ss_pred CCHHHHHHHHHHHHHHCCCCH----------H------------------------HHHHHHHHHHHHCCCHHHHCCCHH
T ss_conf 310116676330687729998----------9------------------------999999999987599667629933
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEE
Q ss_conf 75565566445457999999724985351335998999898999999999987704997999983590048831275999
Q 000524 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1444)
Q Consensus 318 ~~~~rgLSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~Iil 397 (1444)
.|||||||||+||++|+.+|++++|||||+|||+.++.+|++.|+++.+..+.|+|+ ++|..+++..++|+|++
T Consensus 139 -----~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~-vTHd~~~~~~~~drv~v 212 (240)
T d1g2912 139 -----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY-VTHDQVEAMTMGDRIAV 212 (240)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEE
T ss_pred -----HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHCCEEEE
T ss_conf -----499999999999999826998898258876569899989999999998636988999-95999999996999999
Q ss_pred ECCCEEEEECCHHHHHH
Q ss_conf 72982999618555999
Q 000524 398 LSDGQIVYQGPRELVLE 414 (1444)
Q Consensus 398 L~~G~ivy~Gp~~~~~~ 414 (1444)
|.+|++++.|+.+++..
T Consensus 213 m~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 213 MNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEECCHHHHHH
T ss_conf 98999999859999982
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=327.55 Aligned_cols=214 Identities=22% Similarity=0.357 Sum_probs=192.0
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 24883116566144023210544785488450178772891999965799955789964518978963799999959027
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 925 (1444)
.++++|++.++. ...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 499987999999-------------9999813067887998999999999829999999975899--9878799916413
Q ss_pred CC-CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 81-12232589970489889987587999998771199999988999999999999399411101126998876799888
Q 000524 926 KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 1004 (1444)
Q Consensus 926 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqr 1004 (1444)
.. ...+|.+|||+|+..++|.+||+|++.|.+.++ ..++++.++.++++++.++|.+..+..+ ..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred CCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHH
T ss_conf 547700015899800335342220999999999873---9999999999999998759855660995-----46999998
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECC
Q ss_conf 8999999995199778994999999999999999999999848-988999954887789973065879925949999848
Q 000524 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083 (1444)
Q Consensus 1005 kRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~i~ll~~gG~~vy~G~ 1083 (1444)
||++||++|+.+|++|+|||||+|||+.++..+++.++++.+. |.|+|+++|++. ++.+.+|++++|.+ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 89999766404998243068866689899989999999998731980799948999-99986999999989-99999859
Q ss_pred C
Q ss_conf 9
Q 000524 1084 L 1084 (1444)
Q Consensus 1084 ~ 1084 (1444)
+
T Consensus 221 ~ 221 (239)
T d1v43a3 221 P 221 (239)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=329.60 Aligned_cols=213 Identities=24% Similarity=0.368 Sum_probs=188.8
Q ss_pred EEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 48831165661440232105447854884501787728919999657999557899645189789637999999590278
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 926 (1444)
|+++|+++++. ...+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 99999999989-------------9999811177886998999998999829999999965878--88888999999778
Q ss_pred CC-CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 11-22325899704898899875879999987711999999889999999999993994111011269988767998888
Q 000524 927 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 1005 (1444)
Q Consensus 927 ~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1005 (1444)
.. ..+|.+|||+|++.++|.+||+|++.|...++. .+.++.+++++++++.++|.+..+..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHH
T ss_conf 886444322234334202643337889789998759---988999999999997578865664896-----569999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 99999999519977899499999999999999999999984-89889999548877899730658799259499998489
Q 000524 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1006 Rl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~i~ll~~gG~~vy~G~~ 1084 (1444)
|++||++|+.+|++|+|||||+|||+.++..+++.++++.+ .|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999703998899758887889889989999999998742987999948999-99996999999979-999998089
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=319.69 Aligned_cols=219 Identities=22% Similarity=0.362 Sum_probs=185.5
Q ss_pred EEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 48831165661440232105447854884501787728919999657999557899645189789637999999590278
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 926 (1444)
++++|++++++... ....+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 I~i~nlsk~y~~~~---------~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEECCCC---------EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCC--CCCCEEEECCEECC
T ss_conf 89990799948998---------20898713377884997999988999982165575068877--77662699999857
Q ss_pred CCC------C-CCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 112------2-3258997048988998758799999877119999998899999999999939941-1101126998876
Q 000524 927 QET------F-ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSG 998 (1444)
Q Consensus 927 ~~~------~-~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~g 998 (1444)
... + ++.+|||.|+..+.|.+||+|++.+....+.....+.+++.+.+.+.++.++|.+ ..+..+ ..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----HH
T ss_conf 6885551231255577880412417686688877578887224789999999999998876242345534880-----23
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCE
Q ss_conf 7998888999999995199778994999999999999999999999848-988999954887789973065879925949
Q 000524 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 999 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~i~ll~~gG~ 1077 (1444)
||||||||++||++|+.+|++|+|||||+|||+.++..|++.++++.++ |.|||+++|++ +..+.+|++++|.+ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~--~~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH--HHHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCH--HHHHHCCEEEEEEC-CE
T ss_conf 8999999999875652278889946876546989999999999999984399999987888--99986998999989-99
Q ss_pred EEEECCC
Q ss_conf 9998489
Q 000524 1078 EIYVGPL 1084 (1444)
Q Consensus 1078 ~vy~G~~ 1084 (1444)
++..|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEECCC
T ss_conf 9995257
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=324.55 Aligned_cols=218 Identities=22% Similarity=0.277 Sum_probs=169.5
Q ss_pred EEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 48831165661440232105447854884501787728919999657999557899645189789637999999590278
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 926 (1444)
++++|++.++... ....++|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC--CCCCCEEECCEEEE
T ss_conf 7998279996999---------814898615057886997999989998988899998758863--66773288676852
Q ss_pred C---C---CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1---1---223258997048988998758799999877119999998899999999999939941110112699887679
Q 000524 927 Q---E---TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000 (1444)
Q Consensus 927 ~---~---~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glS 1000 (1444)
. . .+++.+|||+|+..++|.+||+|++.|...++. .+.++.++.++++++.++|.+..+..+ ..||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCC
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCCHHHHCCH-----HHCC
T ss_conf 08755511554166430225222799649999999999849---998999999999999769903554894-----3499
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEE
Q ss_conf 98888999999995199778994999999999999999999999848-98899995488778997306587992594999
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1079 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~i~ll~~gG~~v 1079 (1444)
||||||++||++|+.+|++|++||||+|||+.++..|++.++++.+. |.|||+++|+.. ++...+|++++|.+ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999989998640105898687446556589888567999999998646978999838999-99986999999979-9999
Q ss_pred EECCCC
Q ss_conf 984898
Q 000524 1080 YVGPLG 1085 (1444)
Q Consensus 1080 y~G~~g 1085 (1444)
+.|++.
T Consensus 221 ~~G~~~ 226 (240)
T d3dhwc1 221 EQDTVS 226 (240)
T ss_dssp EEEETT
T ss_pred EECCHH
T ss_conf 987999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=322.92 Aligned_cols=202 Identities=26% Similarity=0.356 Sum_probs=161.6
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCCHHH
Q ss_conf 75210568848849999769999689999998469999998011999978418998755-21899747888789999999
Q 000524 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEMTVRE 245 (1444)
Q Consensus 167 IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~-r~~aYv~Q~D~~~~~lTVrE 245 (1444)
+|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++.+..++ |.++||+|+..++|.+||+|
T Consensus 15 aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~e 91 (229)
T d3d31a2 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (229)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHH
T ss_conf 884337898799899999899982999999996476888---78899956734652165740561512111174665778
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99986561178833567689889866409999999789999987322335579999999919943234434475565566
Q 000524 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1444)
Q Consensus 246 tL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rgLS 325 (1444)
|+.|+.+.++... ...++.+++.+||.+-+|..++ .||
T Consensus 92 nl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS 129 (229)
T d3d31a2 92 NLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPL-----TLS 129 (229)
T ss_dssp HHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGG-----GSC
T ss_pred HHHHHHHHCCCCH-------------------------------------HHHHHHHHHHHCCHHHHHCCHH-----HCC
T ss_conf 8888776405538-------------------------------------9999999998256555758955-----479
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEEE
Q ss_conf 44545799999972498535133599899989899999999998770499799998359004883127599972982999
Q 000524 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1444)
Q Consensus 326 GGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~IilL~~G~ivy 405 (1444)
|||||||+||++|+.+|++++|||||+|||+.++.+|++.|+++.+..+.|+++ ++|...++..++|+|++|.+|++++
T Consensus 130 GG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~-vtHd~~~~~~~~drv~vm~~G~iv~ 208 (229)
T d3d31a2 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH-ITHDQTEARIMADRIAVVMDGKLIQ 208 (229)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE-EESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHCCEEEEEECCEEEE
T ss_conf 998401403043443677144347876799899999999999998647968999-7499999999699999997999999
Q ss_pred ECCHHHHHH
Q ss_conf 618555999
Q 000524 406 QGPRELVLE 414 (1444)
Q Consensus 406 ~Gp~~~~~~ 414 (1444)
+|+.+++.+
T Consensus 209 ~g~~~el~~ 217 (229)
T d3d31a2 209 VGKPEEIFE 217 (229)
T ss_dssp EECHHHHHS
T ss_pred ECCHHHHHH
T ss_conf 869999986
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=323.47 Aligned_cols=215 Identities=26% Similarity=0.387 Sum_probs=136.5
Q ss_pred EEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 48831165661440232105447854884501787728919999657999557899645189789637999999590278
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 926 (1444)
++.+|++++++. +...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 4 i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i~ 70 (242)
T d1oxxk2 4 IIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVA 70 (242)
T ss_dssp EEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEEEEEEECC-----------CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEEE
T ss_conf 999757999889-----------99899804078987998999998999809999999975868--88745999999951
Q ss_pred C------CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1------1223258997048988998758799999877119999998899999999999939941110112699887679
Q 000524 927 Q------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 1000 (1444)
Q Consensus 927 ~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glS 1000 (1444)
. ...+|.+|||+|+..++|.+||+|++.|....+ ..+.++.+++++++++.++|.+..|..+ ..||
T Consensus 71 ~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~LS 142 (242)
T d1oxxk2 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELS 142 (242)
T ss_dssp ETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSC
T ss_pred CCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCH-----HHCC
T ss_conf 3731115312045147730433466665777766556761---3799999999999986659176664895-----4599
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEE
Q ss_conf 98888999999995199778994999999999999999999999848-98899995488778997306587992594999
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1079 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~i~ll~~gG~~v 1079 (1444)
||||||++||++|+.+|++|++||||+|||+.++..+++.++++.+. |.|+|+++|++. ++.+.+|++++|++ |+++
T Consensus 143 GGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~iv 220 (242)
T d1oxxk2 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLV 220 (242)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999858998757760466145447866799899889989999998635987999979999-99996999999989-9999
Q ss_pred EECCC
Q ss_conf 98489
Q 000524 1080 YVGPL 1084 (1444)
Q Consensus 1080 y~G~~ 1084 (1444)
..|++
T Consensus 221 ~~g~~ 225 (242)
T d1oxxk2 221 QVGKP 225 (242)
T ss_dssp EEECH
T ss_pred EECCH
T ss_conf 98699
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=321.30 Aligned_cols=209 Identities=22% Similarity=0.310 Sum_probs=182.9
Q ss_pred CCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCC------CEEEEECCCC
Q ss_conf 5541375210568848849999769999689999998469999998011999978418998755------2189974788
Q 000524 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE------RTAAYISQHD 235 (1444)
Q Consensus 162 ~~~~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~------r~~aYv~Q~D 235 (1444)
+....+|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|+++.....+ +.++||+|+.
T Consensus 15 ~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~ 91 (240)
T d3dhwc1 15 TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHF 91 (240)
T ss_dssp SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSC
T ss_pred CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEECCEEEEECCHHHHHHHHCCCCCCCCCC
T ss_conf 81489861505788699799998999898889999875886366---773288676852087555115541664302252
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 87899999999998656117883356768988986640999999978999998732233557999999991994323443
Q 000524 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTM 315 (1444)
Q Consensus 236 ~~~~~lTVrEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~ 315 (1444)
.+++.+||+||+.|+.+..+.... +....++.+|+.+||++.+|..
T Consensus 92 ~l~~~~tv~eni~~~l~~~~~~~~----------------------------------~~~~~v~~~L~~vgL~~~~~~~ 137 (240)
T d3dhwc1 92 NLLSSRTVFGNVALPLELDNTPKD----------------------------------EVKRRVTELLSLVGLGDKHDSY 137 (240)
T ss_dssp CCCTTSBHHHHHHHHHHTTTCCTT----------------------------------HHHHHHHHHHHHHSTTTTTSSC
T ss_pred CCCCCCCHHHHHHHHHHHCCCCHH----------------------------------HHHHHHHHHHHHCCCCHHHHCC
T ss_conf 227996499999999998499989----------------------------------9999999999976990355489
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEE
Q ss_conf 44755655664454579999997249853513359989998989999999999877049979999835900488312759
Q 000524 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1444)
Q Consensus 316 VG~~~~rgLSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~I 395 (1444)
++ .|||||||||+||++|+.+|+++++||||+|||+.++.+|++.|+++.+..+.|+++ ++|...++..++|+|
T Consensus 138 ~~-----~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~-vTHdl~~~~~~~dri 211 (240)
T d3dhwc1 138 PS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILL-ITHEMDVVKRICDCV 211 (240)
T ss_dssp BS-----CCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEE-EBSCHHHHHHHCSEE
T ss_pred HH-----HCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHCCEE
T ss_conf 43-----499999989998640105898687446556589888567999999998646978999-838999999869999
Q ss_pred EEECCCEEEEECCHHHHH
Q ss_conf 997298299961855599
Q 000524 396 ILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 396 ilL~~G~ivy~Gp~~~~~ 413 (1444)
++|.+|++++.|+.+++.
T Consensus 212 ~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 212 AVISNGELIEQDTVSEVF 229 (240)
T ss_dssp EEEETTEEEEEEETTTTT
T ss_pred EEEECCEEEEECCHHHHH
T ss_conf 999799999987999997
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=322.72 Aligned_cols=208 Identities=21% Similarity=0.274 Sum_probs=181.6
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCC-----C-CCEEEEECCCCCC
Q ss_conf 413752105688488499997699996899999984699999980119999784189987-----5-5218997478887
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-----P-ERTAAYISQHDNH 237 (1444)
Q Consensus 164 ~~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-----~-~r~~aYv~Q~D~~ 237 (1444)
...+|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... + +|.++||.|+..+
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCC
T ss_conf 989980407898799899999899980999999997586888---74599999995137311153120451477304334
Q ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 89999999999865611788335676898898664099999997899999873223355799999999199432344344
Q 000524 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1444)
Q Consensus 238 ~~~lTVrEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~VG 317 (1444)
+|.+||+||+.|+.+..+... . +.+..++.+++.+||++.+|..++
T Consensus 94 ~p~ltv~eni~~~l~~~~~~~----------~------------------------~~~~~v~~~l~~~gL~~~~~~~p~ 139 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNMKMSK----------E------------------------EIRKRVEEVAKILDIHHVLNHFPR 139 (242)
T ss_dssp CTTSCHHHHHHGGGTTSSCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSCGG
T ss_pred CCCCCHHHHHHHHHHHHCCCH----------H------------------------HHHHHHHHHHHHCCHHHHHHCCHH
T ss_conf 666657777665567613799----------9------------------------999999999866591766648954
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEE
Q ss_conf 75565566445457999999724985351335998999898999999999987704997999983590048831275999
Q 000524 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1444)
Q Consensus 318 ~~~~rgLSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~Iil 397 (1444)
.|||||||||+||++|+.+|+++++||||+|||+.++.++++.|+++.+..+.|+|+ ++|...++..++|+|++
T Consensus 140 -----~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~-vTHd~~~~~~~~dri~v 213 (242)
T d1oxxk2 140 -----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV-VSHDPADIFAIADRVGV 213 (242)
T ss_dssp -----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEE-EESCHHHHHHHCSEEEE
T ss_pred -----HCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-EECCHHHHHHHCCEEEE
T ss_conf -----599999858998757760466145447866799899889989999998635987999-97999999996999999
Q ss_pred ECCCEEEEECCHHHHHH
Q ss_conf 72982999618555999
Q 000524 398 LSDGQIVYQGPRELVLE 414 (1444)
Q Consensus 398 L~~G~ivy~Gp~~~~~~ 414 (1444)
|.+|+++..|+.+++..
T Consensus 214 m~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 214 LVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEECCHHHHHH
T ss_conf 98999999869999986
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=317.12 Aligned_cols=213 Identities=24% Similarity=0.325 Sum_probs=160.4
Q ss_pred EEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 48831165661440232105447854884501787728919999657999557899645189789637999999590278
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 926 (1444)
|..+|++.++ +++.+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 I~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~ 67 (238)
T d1vpla_ 3 VVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVV 67 (238)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred EEEEEEEEEE-------------CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 8999589999-------------99999806256884897999999999999999999966988--78887999867244
Q ss_pred C--CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 1--12232589970489889987587999998771199999988999999999999399411101126998876799888
Q 000524 927 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 1004 (1444)
Q Consensus 927 ~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqr 1004 (1444)
. ...++..|||+|++..++.+|+.|++.|.+.++. .+.++.++.++++++.++|.+..+..+ +.||||||
T Consensus 68 ~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~~ 139 (238)
T d1vpla_ 68 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMV 139 (238)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHH
T ss_pred CCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHH-----HHCCHHHH
T ss_conf 6839887218675001546878667788898998617---998999999999998679788885045-----33799898
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 89999999951997789949999999999999999999998489889999548877899730658799259499998489
Q 000524 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1005 kRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~ll~~gG~~vy~G~~ 1084 (1444)
||++||++|+.+|++|+|||||+|||+.++..+++.++++++.|.|||+++|+.. ++...+|++++|.+ |++++.|++
T Consensus 140 qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~~ 217 (238)
T d1vpla_ 140 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTV 217 (238)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 9999999986599988733798897989999999999999965998999959899-99996999999989-999999289
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=314.23 Aligned_cols=209 Identities=24% Similarity=0.375 Sum_probs=167.2
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCC---CCEEEEECCCCCCCCC
Q ss_conf 4137521056884884999976999968999999846999999801199997841899875---5218997478887899
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGE 240 (1444)
Q Consensus 164 ~~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~r~~aYv~Q~D~~~~~ 240 (1444)
...+|+|+|+.+++|+.++|+||||||||||+++|+|.++|. +|+|.+||.++.+... ++.++||+|+.. ++.
T Consensus 15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~-lf~ 90 (241)
T d2pmka1 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNV-LLN 90 (241)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCC-CTT
T ss_pred CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC---CCEEEECCEEECCCCHHHHHCEEEEEECCCC-CCC
T ss_conf 960374248998499999999999998999999997357888---8899999999440024655352889824465-578
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999865611788335676898898664099999997899999873223355799999999199432344344755
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTVrEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~ 320 (1444)
.||+||+.|+..-. +.+...+++...+. .+ .+..++...||.+|..+
T Consensus 91 ~Ti~eNi~~~~~~~-------------------------~~~~~~~~~~~~~~-----~~---~i~~~~~~~~t~i~~~g 137 (241)
T d2pmka1 91 RSIIDNISLANPGM-------------------------SVEKVIYAAKLAGA-----HD---FISELREGYNTIVGEQG 137 (241)
T ss_dssp SBHHHHHCTTSTTC-------------------------CHHHHHHHHHHHTC-----HH---HHTTSTTGGGSBCSTTT
T ss_pred CCCCCCCCCCCCCC-------------------------CHHHHHHHHHHHHH-----HH---HHHHHHCCHHHHCCCCC
T ss_conf 40003522357554-------------------------38889999999755-----78---88763201344327878
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 65566445457999999724985351335998999898999999999987704997999983590048831275999729
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~rgLSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~IilL~~ 400 (1444)
. .|||||||||+|||+++.+|++++||||||+||+.++.+|++.|+++.+ ++|+|+. +|.. +....+|+|++|.+
T Consensus 138 ~-~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~i-tH~l-~~~~~~D~i~vl~~ 212 (241)
T d2pmka1 138 A-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIII-AHRL-STVKNADRIIVMEK 212 (241)
T ss_dssp T-CCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEE-CSSG-GGGTTSSEEEEEET
T ss_pred C-CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC--CCEEEEE-ECCH-HHHHHCCEEEEEEC
T ss_conf 8-6698898987544344416513556477655598999999999999858--9989999-7889-99984999999989
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 82999618555999
Q 000524 401 GQIVYQGPRELVLE 414 (1444)
Q Consensus 401 G~ivy~Gp~~~~~~ 414 (1444)
|+++.+|++++++.
T Consensus 213 G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 213 GKIVEQGKHKELLS 226 (241)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHH
T ss_conf 99999889999982
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=317.23 Aligned_cols=209 Identities=21% Similarity=0.280 Sum_probs=184.2
Q ss_pred EEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 48831165661440232105447854884501787728919999657999557899645189789637999999590278
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 926 (1444)
++.+|+++++. . .+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------C-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 89998999949-------------9-78843378987998999998999829999999964768--88788999567346
Q ss_pred CC-CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 11-22325899704898899875879999987711999999889999999999993994111011269988767998888
Q 000524 927 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 1005 (1444)
Q Consensus 927 ~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1005 (1444)
.. ..++.+|||+|+..++|.+||+|++.|...++.-. . +++++++++.+++.+..|..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~---~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---D---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---C---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCC---H---HHHHHHHHHHHCCHHHHHCCH-----HHCCHHHHC
T ss_conf 52165740561512111174665778888877640553---8---999999999825655575895-----547999840
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 99999999519977899499999999999999999999984-89889999548877899730658799259499998489
Q 000524 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1006 Rl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~i~ll~~gG~~vy~G~~ 1084 (1444)
|++||++|+.+|++|+|||||+|||+.++..+++.++++.+ .|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred CHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 1403043443677144347876799899999999999998647968999749999-99996999999979-999998699
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=312.01 Aligned_cols=207 Identities=23% Similarity=0.267 Sum_probs=172.7
Q ss_pred CCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCC-------CEEEEECCC
Q ss_conf 5541375210568848849999769999689999998469999998011999978418998755-------218997478
Q 000524 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-------RTAAYISQH 234 (1444)
Q Consensus 162 ~~~~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~-------r~~aYv~Q~ 234 (1444)
+....+|+|+|+.+++|++++|+|||||||||||++|+|..+|+ +|+|.++|+++....++ +.++||.|+
T Consensus 15 ~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~ 91 (230)
T d1l2ta_ 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ 91 (230)
T ss_dssp TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTT
T ss_pred CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCC---CCEEEECCEECCCCCHHHCCHHHCCEEEEEECC
T ss_conf 82089871337788499799998899998216557506887777---662699999857688555123125557788041
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCC
Q ss_conf 8878999999999986561178833567689889866409999999789999987322335579999999919943-234
Q 000524 235 DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV-CAD 313 (1444)
Q Consensus 235 D~~~~~lTVrEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~-~~d 313 (1444)
..++|.+||+||+.|+...+..+... .. +....+...|+.+||++ .+|
T Consensus 92 ~~l~~~~tv~eni~~~~~~~~~~~~~-------~~------------------------~~~~~~~~~l~~~~L~~~~~~ 140 (230)
T d1l2ta_ 92 FNLIPLLTALENVELPLIFKYRGAMS-------GE------------------------ERRKRALECLKMAELEERFAN 140 (230)
T ss_dssp CCCCTTSCHHHHHHHHHHTCCSSCCC-------HH------------------------HHHHHHHHHHHHTTCCGGGTT
T ss_pred HHHCCCCCHHHHHHHHHHHHCCCCCC-------HH------------------------HHHHHHHHHHHHHCHHHHHHC
T ss_conf 24176866888775788872247899-------99------------------------999999998876242345534
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCC
Q ss_conf 43447556556644545799999972498535133599899989899999999998770499799998359004883127
Q 000524 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393 (1444)
Q Consensus 314 T~VG~~~~rgLSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD 393 (1444)
..+ ..|||||||||+||++|+.+|+++++||||+|||+.++.+|++.|+++.+..+.|+|+..| ...+ ..++|
T Consensus 141 ~~p-----~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTH-d~~~-a~~~d 213 (230)
T d1l2ta_ 141 HKP-----NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH-DINV-ARFGE 213 (230)
T ss_dssp CCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECS-CHHH-HTTSS
T ss_pred CCH-----HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECC-CHHH-HHHCC
T ss_conf 880-----2389999999998756522788899468765469899999999999999843999999878-8899-98699
Q ss_pred EEEEECCCEEEEECCH
Q ss_conf 5999729829996185
Q 000524 394 DIILLSDGQIVYQGPR 409 (1444)
Q Consensus 394 ~IilL~~G~ivy~Gp~ 409 (1444)
+|++|.+|++++.|+.
T Consensus 214 rv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 214 RIIYLKDGEVEREEKL 229 (230)
T ss_dssp EEEEEETTEEEEEEEC
T ss_pred EEEEEECCEEEEECCC
T ss_conf 8999989999995257
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=317.10 Aligned_cols=212 Identities=21% Similarity=0.355 Sum_probs=166.7
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCC---CEEEEECCCCCCCCC
Q ss_conf 41375210568848849999769999689999998469999998011999978418998755---218997478887899
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGE 240 (1444)
Q Consensus 164 ~~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~---r~~aYv~Q~D~~~~~ 240 (1444)
...+|+|+|+.+++|+.++|+||||||||||+++|+|.++|. +|+|.+||.++.+...+ +.++||+|+...| .
T Consensus 26 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~ 101 (251)
T d1jj7a_ 26 DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF-G 101 (251)
T ss_dssp TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC-S
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCCCCC-C
T ss_conf 997674438998499899999999984999999986143787---689988998531101378887765404565002-7
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999865611788335676898898664099999997899999873223355799999999199432344344755
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTVrEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~ 320 (1444)
.||+||+.|+..-+. .. +...++... ....-.+.+|++..||.+|...
T Consensus 102 ~tv~eni~~g~~~~~--~~----------------------~~~~~~~~~--------~~~~~~i~~l~~g~~~~i~~~~ 149 (251)
T d1jj7a_ 102 RSLQENIAYGLTQKP--TM----------------------EEITAAAVK--------SGAHSFISGLPQGYDTEVDEAG 149 (251)
T ss_dssp SBHHHHHHCSCSSCC--CH----------------------HHHHHHHHH--------HTCHHHHHTSTTGGGCBCCSSC
T ss_pred CCHHHHHHHHHCCCC--HH----------------------HHHHHHHHH--------HHHHHHHHHCCCCCHHHHHCCC
T ss_conf 634655454210130--27----------------------889999999--------9899999856121113675167
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 65566445457999999724985351335998999898999999999987704997999983590048831275999729
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~rgLSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~IilL~~ 400 (1444)
..|||||||||+|||+++.+|++++||||||+||+.+..+|++.|+++.+..++|+|+. +|.. +....+|+|++|.+
T Consensus 150 -~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~i-tH~l-~~~~~aDrI~vl~~ 226 (251)
T d1jj7a_ 150 -SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLI-TQHL-SLVEQADHILFLEG 226 (251)
T ss_dssp -SSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEE-CSCH-HHHHTCSEEEEEET
T ss_pred -CCCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE-ECCH-HHHHHCCEEEEEEC
T ss_conf -66895470489986044568707871675765685368999999999765069899999-5979-99985999999989
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 82999618555999
Q 000524 401 GQIVYQGPRELVLE 414 (1444)
Q Consensus 401 G~ivy~Gp~~~~~~ 414 (1444)
|+++.+|+++++++
T Consensus 227 G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 227 GAIREGGTHQQLME 240 (251)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHH
T ss_conf 99999889999985
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=310.31 Aligned_cols=219 Identities=25% Similarity=0.357 Sum_probs=128.6
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCC----CEEEEECCCCCCCCC
Q ss_conf 1375210568848849999769999689999998469999998011999978418998755----218997478887899
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHIGE 240 (1444)
Q Consensus 165 ~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----r~~aYv~Q~D~~~~~ 240 (1444)
.++|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....++ +.++|++|+...++.
T Consensus 17 ~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ 93 (254)
T d1g6ha_ 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93 (254)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 68871217998899799999999984999999997797688---737999999664056999998338725776424788
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999865611788335676898898664099999997899999873223355799999999199432344344755
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTVrEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~ 320 (1444)
+||+||+.+++..++...... ...+ ...++ + .+....++.+++.+++++.+|..++
T Consensus 94 ltv~enl~~~~~~~~~~~~~~----~~~~----~~~~~-~------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 149 (254)
T d1g6ha_ 94 MTVLENLLIGEICPGESPLNS----LFYK----KWIPK-E------------EEMVEKAFKILEFLKLSHLYDRKAG--- 149 (254)
T ss_dssp SBHHHHHHGGGTSTTSCHHHH----HHHC----SSCCC-C------------HHHHHHHHHHHHHTTCGGGTTSBGG---
T ss_pred CEEEEEEEEHHHHCCCCCHHH----HHHH----CCCCC-H------------HHHHHHHHHHHHHCCCCHHCCCCHH---
T ss_conf 742321430133303450456----6542----13532-8------------9999999999876196302059535---
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 65566445457999999724985351335998999898999999999987704997999983590048831275999729
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~rgLSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~IilL~~ 400 (1444)
.|||||||||.||++++.+|++++|||||+|||+.++.+|++.|+++.. .+ ++|+.+.|..+++..++|+|++|.+
T Consensus 150 --~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g-~til~vsHdl~~~~~~~Drv~vm~~ 225 (254)
T d1g6ha_ 150 --ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KG-ITFLIIEHRLDIVLNYIDHLYVMFN 225 (254)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT-CEEEEECSCCSTTGGGCSEEEEEET
T ss_pred --HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEECCHHHHHHHCCEEEEEEC
T ss_conf --6991888899999999759272324397656999999999999999997-89-9899994769999986999999969
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 82999618555999
Q 000524 401 GQIVYQGPRELVLE 414 (1444)
Q Consensus 401 G~ivy~Gp~~~~~~ 414 (1444)
|+++..|+.+++.+
T Consensus 226 G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 226 GQIIAEGRGEEEIK 239 (254)
T ss_dssp TEEEEEEESHHHHH
T ss_pred CEEEEEECHHHHHH
T ss_conf 98999966899865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=310.95 Aligned_cols=213 Identities=23% Similarity=0.337 Sum_probs=140.1
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 24883116566144023210544785488450178772891999965799955789964518978963799999959027
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 925 (1444)
-++.+|++.++. ...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~i 70 (240)
T d1ji0a_ 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCCC
T ss_conf 799961899989-------------9888830257888997999999999859999999967888--8803898424434
Q ss_pred CCCC---C-CCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 8112---2-325899704898899875879999987711999999889999999999993-9941110112699887679
Q 000524 926 KQET---F-ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKPLIQSLVGLPGVSGLS 1000 (1444)
Q Consensus 926 ~~~~---~-~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l-~L~~~~~~~vg~~~~~glS 1000 (1444)
.... . +..++|++|+...++.+||+|++.+.+..+.+ .+..++.++++++.+ ++.+..+..++ .||
T Consensus 71 ~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LS 141 (240)
T d1ji0a_ 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLGG-----TLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBSS-----SSC
T ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHCHHHHHHCCHH-----HCC
T ss_conf 46608888874235567655457763699999988873278----889999999999874176888758543-----389
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEE
Q ss_conf 98888999999995199778994999999999999999999999848988999954887789973065879925949999
Q 000524 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1080 (1444)
Q Consensus 1001 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~ll~~gG~~vy 1080 (1444)
||||||++||++|+.+|++|+|||||+|||+.++..+++.++++++.|.||++++|+.. ++.+.+|++++|.+ |++++
T Consensus 142 GG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv~ 219 (240)
T d1ji0a_ 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEE
T ss_conf 99999999999998299874003988679999999999999999968998999958899-99996999999989-99999
Q ss_pred ECCC
Q ss_conf 8489
Q 000524 1081 VGPL 1084 (1444)
Q Consensus 1081 ~G~~ 1084 (1444)
.|++
T Consensus 220 ~g~~ 223 (240)
T d1ji0a_ 220 EGKA 223 (240)
T ss_dssp EEEH
T ss_pred ECCH
T ss_conf 8489
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-45 Score=307.13 Aligned_cols=214 Identities=21% Similarity=0.260 Sum_probs=140.6
Q ss_pred EEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 48831165661440232105447854884501787728919999657999557899645189789637999999590278
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 926 (1444)
++.+|++.++. ...+|+|||+.+++||++||+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 3 LHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNIN 67 (258)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCEEECCEEEC
T ss_conf 99997899989-------------9998815066886997999998999829999999974766--78997799999933
Q ss_pred CC----------------CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CC
Q ss_conf 11----------------22325899704898899875879999987711999999889999999999993994111-01
Q 000524 927 QE----------------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-QS 989 (1444)
Q Consensus 927 ~~----------------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~-~~ 989 (1444)
.. ..++.+|||.|+..+.|.+||.|++.+...... ..+.++.++.+.++++.++|.+.. +.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~ 145 (258)
T d1b0ua_ 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQGK 145 (258)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred CCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 677520000235176799974544899833231411010213656578762--999899999999999982995244306
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEE
Q ss_conf 12699887679988889999999951997789949999999999999999999998489889999548877899730658
Q 000524 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDEL 1069 (1444)
Q Consensus 990 ~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i 1069 (1444)
.+ ..||||||||++||++|+.+|++|++||||+|||+.++..|++.++++.+.|.|||+++|+.. ++...+|++
T Consensus 146 ~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri 219 (258)
T d1b0ua_ 146 YP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 219 (258)
T ss_dssp CG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEE
T ss_pred CC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCEE
T ss_conf 82-----205677888989999984399878852455568878888998765541036883389948999-999869999
Q ss_pred EEEECCCEEEEECCC
Q ss_conf 799259499998489
Q 000524 1070 FLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1070 ~ll~~gG~~vy~G~~ 1084 (1444)
++|.+ |+++..|++
T Consensus 220 ~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 220 IFLHQ-GKIEEEGDP 233 (258)
T ss_dssp EEEET-TEEEEEECH
T ss_pred EEEEC-CEEEEECCH
T ss_conf 99979-999998499
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=310.99 Aligned_cols=208 Identities=23% Similarity=0.382 Sum_probs=136.9
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCC---CCEEEEECCCCCCCCCC
Q ss_conf 137521056884884999976999968999999846999999801199997841899875---52189974788878999
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~r~~aYv~Q~D~~~~~l 241 (1444)
..+|+|+|+.+++|+.++|+||||||||||+++|+|.++|. +|+|.+||.++.+... ++.++||+|++.++ ..
T Consensus 31 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~ 106 (255)
T d2hyda1 31 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SD 106 (255)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-SS
T ss_pred CCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHHEEEEEECCCCCC-CC
T ss_conf 76064438998399899998899980999999997127863---000153998753078888634145651015689-98
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999998656117883356768988986640999999978999998732233557999999991994323443447556
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TVrEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~ 321 (1444)
||+||+.|+... .+.+...+++...+. .+ .+..|++..||.+|+...
T Consensus 107 Ti~eNi~~g~~~-------------------------~~~~~~~~al~~~~l-----~~---~i~~lp~gl~t~i~~~g~ 153 (255)
T d2hyda1 107 TVKENILLGRPT-------------------------ATDEEVVEAAKMANA-----HD---FIMNLPQGYDTEVGERGV 153 (255)
T ss_dssp BHHHHHGGGCSS-------------------------CCHHHHHHHHHHTTC-----HH---HHHTSTTGGGCBCCGGGT
T ss_pred CHHHHHHCCCCC-------------------------CCHHHHHHHHHHHCC-----HH---HHHHCCCCCCCHHCCCCC
T ss_conf 799998515867-------------------------999999999999697-----99---997362420103338889
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCC
Q ss_conf 55664454579999997249853513359989998989999999999877049979999835900488312759997298
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 rgLSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~IilL~~G 401 (1444)
.||||||||++|||+++.+|++++|||||++||+.++..|++.|+++.+ ++|+|+. +|. .+....+|+|++|++|
T Consensus 154 -~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~i-tH~-~~~~~~~D~ii~l~~G 228 (255)
T d2hyda1 154 -KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIV-AHR-LSTITHADKIVVIENG 228 (255)
T ss_dssp -TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEE-CSS-GGGTTTCSEEEEEETT
T ss_pred -CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEE-ECC-HHHHHHCCEEEEEECC
T ss_conf -8499999999999998559989998376544797799999999998753--8889999-689-9999859999999899
Q ss_pred EEEEECCHHHHHH
Q ss_conf 2999618555999
Q 000524 402 QIVYQGPRELVLE 414 (1444)
Q Consensus 402 ~ivy~Gp~~~~~~ 414 (1444)
+++..|+++++++
T Consensus 229 ~iv~~G~~~eLl~ 241 (255)
T d2hyda1 229 HIVETGTHRELIA 241 (255)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999889999986
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.4e-45 Score=305.71 Aligned_cols=206 Identities=23% Similarity=0.343 Sum_probs=173.8
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCC----CEEEEECCCCCCCC
Q ss_conf 41375210568848849999769999689999998469999998011999978418998755----21899747888789
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHIG 239 (1444)
Q Consensus 164 ~~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----r~~aYv~Q~D~~~~ 239 (1444)
.+.+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....++ ..++|++|+..+++
T Consensus 18 ~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~ 94 (240)
T d1ji0a_ 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP 94 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCT
T ss_pred CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCC
T ss_conf 988883025788899799999999985999999996788888---03898424434466088888742355676554577
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCC
Q ss_conf 9999999998656117883356768988986640999999978999998732233557999999991-994323443447
Q 000524 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLEVCADTMVGD 318 (1444)
Q Consensus 240 ~lTVrEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~L-GL~~~~dT~VG~ 318 (1444)
.+||+||+.+++........ .....+.++..+ +|++.+|..++
T Consensus 95 ~ltv~en~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~l~~~~~~~~~- 138 (240)
T d1ji0a_ 95 ELTVYENLMMGAYNRKDKEG-----------------------------------IKRDLEWIFSLFPRLKERLKQLGG- 138 (240)
T ss_dssp TSBHHHHHHGGGTTCCCSSH-----------------------------------HHHHHHHHHHHCHHHHTTTTSBSS-
T ss_pred CCCHHHHHHHHHHHCCCHHH-----------------------------------HHHHHHHHHHHHHCHHHHHHCCHH-
T ss_conf 63699999988873278889-----------------------------------999999999874176888758543-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEE
Q ss_conf 55655664454579999997249853513359989998989999999999877049979999835900488312759997
Q 000524 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1444)
Q Consensus 319 ~~~rgLSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~IilL 398 (1444)
.|||||||||+||++++.+|++|+|||||+|||+.++.+|++.++++.+ .+.|+++ ++|...++..++|+|++|
T Consensus 139 ----~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~-~tH~l~~~~~~~drv~vl 212 (240)
T d1ji0a_ 139 ----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILL-VEQNALGALKVAHYGYVL 212 (240)
T ss_dssp ----SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEE-EESCHHHHHHHCSEEEEE
T ss_pred ----HCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHHHHHCCEEEEE
T ss_conf ----3899999999999999829987400398867999999999999999996-8998999-958899999969999999
Q ss_pred CCCEEEEECCHHHHHH
Q ss_conf 2982999618555999
Q 000524 399 SDGQIVYQGPRELVLE 414 (1444)
Q Consensus 399 ~~G~ivy~Gp~~~~~~ 414 (1444)
.+|++++.|+.+++.+
T Consensus 213 ~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 213 ETGQIVLEGKASELLD 228 (240)
T ss_dssp ETTEEEEEEEHHHHHT
T ss_pred ECCEEEEECCHHHHHC
T ss_conf 8999999848999842
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.8e-45 Score=304.17 Aligned_cols=208 Identities=26% Similarity=0.280 Sum_probs=181.5
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCC--CCEEEEECCCCCCCCCC
Q ss_conf 4137521056884884999976999968999999846999999801199997841899875--52189974788878999
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP--ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 164 ~~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~--~r~~aYv~Q~D~~~~~l 241 (1444)
.+++|+|+|+.+++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++.+... ++.++||+|++..++.+
T Consensus 14 ~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~l 90 (238)
T d1vpla_ 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 90 (238)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCC
T ss_conf 999980625688489799999999999999999996698878---88799986724468398872186750015468786
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999998656117883356768988986640999999978999998732233557999999991994323443447556
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TVrEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~ 321 (1444)
||+|++.|.+.+.+... .+....++..++.++|.+-.+..++
T Consensus 91 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 132 (238)
T d1vpla_ 91 QGIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS---- 132 (238)
T ss_dssp BHHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG----
T ss_pred CHHHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHH----
T ss_conf 67788898998617998----------------------------------9999999999986797888850453----
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCC
Q ss_conf 55664454579999997249853513359989998989999999999877049979999835900488312759997298
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 rgLSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~IilL~~G 401 (1444)
.+|||||||++||++++.+|++++|||||+|||+.++.+|++.+++++. .+.|+++ ..|...++..++|+|++|.+|
T Consensus 133 -~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~-~tH~l~~~~~~~drv~vl~~G 209 (238)
T d1vpla_ 133 -TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILV-SSHNMLEVEFLCDRIALIHNG 209 (238)
T ss_dssp -GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-EECCHHHHTTTCSEEEEEETT
T ss_pred -HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHHHHHCCEEEEEECC
T ss_conf -3799898999999998659998873379889798999999999999996-5998999-959899999969999999899
Q ss_pred EEEEECCHHHHHHH
Q ss_conf 29996185559999
Q 000524 402 QIVYQGPRELVLEF 415 (1444)
Q Consensus 402 ~ivy~Gp~~~~~~~ 415 (1444)
++++.|+.+++.+.
T Consensus 210 ~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 210 TIVETGTVEELKER 223 (238)
T ss_dssp EEEEEEEHHHHHHH
T ss_pred EEEEECCHHHHHHC
T ss_conf 99999289999865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=307.69 Aligned_cols=199 Identities=24% Similarity=0.330 Sum_probs=167.9
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 10568848849999769999689999998469999998011999978418998755-21899747888789999999999
Q 000524 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEMTVRETLA 248 (1444)
Q Consensus 170 ~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~-r~~aYv~Q~D~~~~~lTVrEtL~ 248 (1444)
|+|+.+. ++.++|+||||||||||+++|+|.++|+ +|+|.+||.++....+. |.++||+|++.++|.+||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHH
T ss_conf 9999749-9799999799980999999997399989---62899999998869989928522523144352201557666
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 86561178833567689889866409999999789999987322335579999999919943234434475565566445
Q 000524 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1444)
Q Consensus 249 Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rgLSGGQ 328 (1444)
|+.+.. . +.+ .+.+++.+++.+||.+.+|..+. .|||||
T Consensus 93 ~~l~~~--~----------~~~------------------------~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~ 131 (240)
T d2onka1 93 YGLRNV--E----------RVE------------------------RDRRVREMAEKLGIAHLLDRKPA-----RLSGGE 131 (240)
T ss_dssp TTCTTS--C----------HHH------------------------HHHHHHHHHHTTTCTTTTTCCGG-----GSCHHH
T ss_pred HHHCCC--C----------HHH------------------------HHHHHHHHHHHCCCHHHHHCCHH-----HCCHHH
T ss_conf 532336--7----------788------------------------99999999986383756657944-----489999
Q ss_pred HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 45799999972498535133599899989899999999998770499799998359004883127599972982999618
Q 000524 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1444)
Q Consensus 329 RkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~IilL~~G~ivy~Gp 408 (1444)
||||+||++++.+|++++|||||+|||+.++..+++.++++.+..+.|+|+ ++|...++..++|+|++|++|+++.+|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~-vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH-VTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE-EESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 899999877751677067528655588799999999999998743976999-8189999999699999998999999906
Q ss_pred HHHHHH
Q ss_conf 555999
Q 000524 409 RELVLE 414 (1444)
Q Consensus 409 ~~~~~~ 414 (1444)
.+++..
T Consensus 211 ~~el~~ 216 (240)
T d2onka1 211 LKELFS 216 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHC
T ss_conf 999832
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=307.80 Aligned_cols=218 Identities=24% Similarity=0.268 Sum_probs=187.6
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 24883116566144023210544785488450178772891999965799955789964518978963799999959027
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 925 (1444)
-+..+|++.++ +..++|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 iL~v~nlsk~y-------------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEE-------------CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 69997789997-------------99688712179988997999999999849999999977976--8873799999966
Q ss_pred CCCC----CCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8112----23258997048988998758799999877119----------999998899999999999939941110112
Q 000524 926 KQET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRL----------PPEVDSETRKMFIEEVMELVELKPLIQSLV 991 (1444)
Q Consensus 926 ~~~~----~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~----------~~~~~~~~~~~~v~~vl~~l~L~~~~~~~v 991 (1444)
.... .++.++|++|+...++.+||+|++.+++..+. ......++..+.++++++.+++.+..|..+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH
T ss_conf 40569999983387257764247887423214301333034504566542135328999999999987619630205953
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEE
Q ss_conf 69988767998888999999995199778994999999999999999999999848988999954887789973065879
Q 000524 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1071 (1444)
Q Consensus 992 g~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~l 1071 (1444)
+ .||||||||+.||++|+.+|++|+|||||+|||+.++..+++.++++.+.|.|||+++|+.. ++.+.+|++++
T Consensus 149 ~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred H-----HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEE
T ss_conf 5-----69918888999999997592723243976569999999999999999978998999947699-99986999999
Q ss_pred EECCCEEEEECCCC
Q ss_conf 92594999984898
Q 000524 1072 MKRGGQEIYVGPLG 1085 (1444)
Q Consensus 1072 l~~gG~~vy~G~~g 1085 (1444)
|.+ |+++..|++.
T Consensus 223 m~~-G~iv~~g~~~ 235 (254)
T d1g6ha_ 223 MFN-GQIIAEGRGE 235 (254)
T ss_dssp EET-TEEEEEEESH
T ss_pred EEC-CEEEEEECHH
T ss_conf 969-9899996689
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.6e-45 Score=302.07 Aligned_cols=211 Identities=26% Similarity=0.435 Sum_probs=173.4
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 24883116566144023210544785488450178772891999965799955789964518978963799999959027
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 925 (1444)
.|+|+|++|+|+. +.+.+|+|||+.+++|+.+||+|+||||||||+++|.|... +.+|+|.+||.+.
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEECC-----------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCEEEECCEEE
T ss_conf 9299999999089-----------99603742489984999999999999989999999973578--8888999999994
Q ss_pred CC---CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCC
Q ss_conf 81---12232589970489889987587999998771199999988999999999999399-------411101126998
Q 000524 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL-------KPLIQSLVGLPG 995 (1444)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L-------~~~~~~~vg~~~ 995 (1444)
.. ..+++.++||+|+..++ ..||+|++.|.. ...+.++ ++++++..++ ..-.++.+|..+
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g 137 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQG 137 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTT
T ss_pred CCCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCC-----CCCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHCCCCC
T ss_conf 4002465535288982446557-840003522357-----5543888----99999997557888763201344327878
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECC
Q ss_conf 87679988889999999951997789949999999999999999999998489889999548877899730658799259
Q 000524 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075 (1444)
Q Consensus 996 ~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~ll~~g 1075 (1444)
..||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++.+ ++|+|+++|+++ ....+|++++|.+
T Consensus 138 -~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~~- 212 (241)
T d2pmka1 138 -AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEK- 212 (241)
T ss_dssp -TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEET-
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHH--HHHHCCEEEEEEC-
T ss_conf -86698898987544344416513556477655598999999999999858-998999978899--9984999999989-
Q ss_pred CEEEEECCC
Q ss_conf 499998489
Q 000524 1076 GQEIYVGPL 1084 (1444)
Q Consensus 1076 G~~vy~G~~ 1084 (1444)
|+++..|+.
T Consensus 213 G~Iv~~G~~ 221 (241)
T d2pmka1 213 GKIVEQGKH 221 (241)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.8e-45 Score=304.09 Aligned_cols=209 Identities=23% Similarity=0.384 Sum_probs=150.5
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCC---CCEEEEECCCCCCCCCC
Q ss_conf 137521056884884999976999968999999846999999801199997841899875---52189974788878999
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~r~~aYv~Q~D~~~~~l 241 (1444)
.++|+|+|+.+++|+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++. +...
T Consensus 28 ~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-l~~~ 103 (253)
T d3b60a1 28 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVH-LFND 103 (253)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCC-CCSS
T ss_pred CCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEECCC-CCCC
T ss_conf 76353328998599999999999985999999986216888---4689878801211106654206879950254-4786
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999998656117883356768988986640999999978999998732233557999999991994323443447556
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TVrEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~ 321 (1444)
|+++|+.++..... +.+...+++...+ ..|. +-.|++..||.+|+..
T Consensus 104 ti~~n~~~~~~~~~------------------------~~~~i~~a~~~~~-----l~~~---i~~l~~gl~t~~~~~~- 150 (253)
T d3b60a1 104 TVANNIAYARTEEY------------------------SREQIEEAARMAY-----AMDF---INKMDNGLDTIIGENG- 150 (253)
T ss_dssp BHHHHHHTTTTSCC------------------------CHHHHHHHHHTTT-----CHHH---HHHSTTGGGSBCCTTS-
T ss_pred CHHHHHHHCCCCCC------------------------CHHHHHHHHHHHH-----HHHH---HHHCCCCCHHHHCCCC-
T ss_conf 20243320572208------------------------9999999999981-----7999---9735544101434888-
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCC
Q ss_conf 55664454579999997249853513359989998989999999999877049979999835900488312759997298
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 rgLSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~IilL~~G 401 (1444)
..|||||||||+|||+++.+|++++||||||+||+.++..|++.|+++.+ ++|+|+ ++|.. +....+|+|++|.+|
T Consensus 151 ~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~-itH~l-~~~~~~D~v~vl~~G 226 (253)
T d3b60a1 151 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLV-IAHRL-STIEQADEIVVVEDG 226 (253)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEE-ECSCG-GGTTTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEE-EECCH-HHHHHCCEEEEEECC
T ss_conf 98499999999999999549988995164445898899999999987522--788999-98879-999859999999899
Q ss_pred EEEEECCHHHHHH
Q ss_conf 2999618555999
Q 000524 402 QIVYQGPRELVLE 414 (1444)
Q Consensus 402 ~ivy~Gp~~~~~~ 414 (1444)
+++.+|+++++++
T Consensus 227 ~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 227 IIVERGTHSELLA 239 (253)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999889999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=316.02 Aligned_cols=209 Identities=23% Similarity=0.327 Sum_probs=163.0
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCC---CCEEEEECCCCCCCCCC
Q ss_conf 137521056884884999976999968999999846999999801199997841899875---52189974788878999
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1444)
Q Consensus 165 ~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~r~~aYv~Q~D~~~~~l 241 (1444)
..+|+|||+.++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 15 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 90 (242)
T d1mv5a_ 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (242)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCCCCCC-C
T ss_conf 84142258998599999999999997999999999960989---8779889988442467888743679756654578-5
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999998656117883356768988986640999999978999998732233557999999991994323443447556
Q 000524 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1444)
Q Consensus 242 TVrEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~ 321 (1444)
||+||+.++..-.. .. +...+. .+.... .-....+++..||.+|+.+.
T Consensus 91 ti~eNi~~~~~~~~--~~-~~~~~~---~~~~~~--------------------------~~~~~~~~~~~~~~i~~~g~ 138 (242)
T d1mv5a_ 91 TIRENLTYGLEGDY--TD-EDLWQV---LDLAFA--------------------------RSFVENMPDQLNTEVGERGV 138 (242)
T ss_dssp EHHHHTTSCTTSCS--CH-HHHHHH---HHHHTC--------------------------TTTTTSSTTGGGCEESTTSB
T ss_pred CHHHHEECCCCCCC--CH-HHHHHH---HHHHHH--------------------------HHHHCCCCCCCCCCCCCCCC
T ss_conf 34543012445554--23-567789---999975--------------------------55420374210152368789
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCC
Q ss_conf 55664454579999997249853513359989998989999999999877049979999835900488312759997298
Q 000524 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1444)
Q Consensus 322 rgLSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~IilL~~G 401 (1444)
.|||||||||+|||+++.+|++++|||||++||+.++.+|++.|+++. .++|+|+. +|.. +....+|+|++|++|
T Consensus 139 -~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~i-tH~l-~~~~~~D~i~vl~~G 213 (242)
T d1mv5a_ 139 -KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVI-AHRL-STIVDADKIYFIEKG 213 (242)
T ss_dssp -CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEE-CCSH-HHHHHCSEEEEEETT
T ss_pred -CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEE-ECCH-HHHHHCCEEEEEECC
T ss_conf -879999999999999852998999658865569889999988788871--79989999-7879-999849999999899
Q ss_pred EEEEECCHHHHHH
Q ss_conf 2999618555999
Q 000524 402 QIVYQGPRELVLE 414 (1444)
Q Consensus 402 ~ivy~Gp~~~~~~ 414 (1444)
+++++|+++++++
T Consensus 214 ~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 214 QITGSGKHNELVA 226 (242)
T ss_dssp EECCCSCHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999999999986
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.4e-44 Score=297.75 Aligned_cols=206 Identities=23% Similarity=0.312 Sum_probs=173.8
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCC----------------CCEE
Q ss_conf 137521056884884999976999968999999846999999801199997841899875----------------5218
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----------------ERTA 228 (1444)
Q Consensus 165 ~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----------------~r~~ 228 (1444)
.++|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++....+ ++.+
T Consensus 15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i 91 (258)
T d1b0ua_ 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91 (258)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCE
T ss_conf 99881506688699799999899982999999997476678---997799999933677520000235176799974544
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 997478887899999999998656-1178833567689889866409999999789999987322335579999999919
Q 000524 229 AYISQHDNHIGEMTVRETLAFSAR-CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (1444)
Q Consensus 229 aYv~Q~D~~~~~lTVrEtL~Faa~-~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LG 307 (1444)
+||.|+...++.+||.|++.|+.. ..+. . +. +....++.+++.+|
T Consensus 92 g~vfQ~~~l~~~~tv~env~~~~~~~~~~-~---------~~------------------------~~~~~~~~~l~~~~ 137 (258)
T d1b0ua_ 92 TMVFQHFNLWSHMTVLENVMEAPIQVLGL-S---------KH------------------------DARERALKYLAKVG 137 (258)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCC-C---------HH------------------------HHHHHHHHHHHHTT
T ss_pred EEEEECHHHCCCHHCCHHHHHHHHHHCCC-C---------HH------------------------HHHHHHHHHHHHCC
T ss_conf 89983323141101021365657876299-9---------89------------------------99999999999829
Q ss_pred CCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCH
Q ss_conf 9432-344344755655664454579999997249853513359989998989999999999877049979999835900
Q 000524 308 LEVC-ADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP 386 (1444)
Q Consensus 308 L~~~-~dT~VG~~~~rgLSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~ 386 (1444)
|.+- .|... ..|||||||||+||++|+.+|+++++||||+|||+.++.+|++.|+++.+ .+.| |+.++|...
T Consensus 138 l~~~~~~~~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~t-il~vtHdl~ 210 (258)
T d1b0ua_ 138 IDERAQGKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKT-MVVVTHEMG 210 (258)
T ss_dssp CCHHHHTSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCC-EEEECSCHH
T ss_pred CCHHHHCCCC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCCC-EEEEECCHH
T ss_conf 9524430682-----20567788898999998439987885245556887888899876554103-6883-389948999
Q ss_pred HHHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 4883127599972982999618555999
Q 000524 387 ETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1444)
Q Consensus 387 e~~~lFD~IilL~~G~ivy~Gp~~~~~~ 414 (1444)
++..++|+|++|.+|++++.|+.+++..
T Consensus 211 ~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 211 FARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9998699999997999999849999983
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=8.4e-45 Score=300.60 Aligned_cols=213 Identities=25% Similarity=0.396 Sum_probs=176.4
Q ss_pred CCEEEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 83248831165661440232105447854884501787728919999657999557899645189789637999999590
Q 000524 844 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 923 (1444)
Q Consensus 844 ~~~i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~ 923 (1444)
...++|+|++|+++. ....+|+|||+.+++|+.+||+|+||||||||+++|+|... +.+|+|.++|.
T Consensus 14 ~g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~ 80 (255)
T d2hyda1 14 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 80 (255)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCEEEEEEEEEEECC-----------CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCE
T ss_conf 887999988999599-----------99760644389983998999988999809999999971278--63000153998
Q ss_pred CCCC---CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCC
Q ss_conf 2781---12232589970489889987587999998771199999988999999999999399411-------1011269
Q 000524 924 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGL 993 (1444)
Q Consensus 924 ~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~ 993 (1444)
+... ..+++.++||+|++.++ ..||+|++.|+. + ..+.+ .++++++..++.+. .|+.+|.
T Consensus 81 ~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~----~-~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~ 150 (255)
T d2hyda1 81 NIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGR----P-TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE 150 (255)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGC----S-SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred ECCCCCHHHHHHEEEEEECCCCCC-CCCHHHHHHCCC----C-CCCHH----HHHHHHHHHCCHHHHHHCCCCCCCHHCC
T ss_conf 753078888634145651015689-987999985158----6-79999----9999999969799997362420103338
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEE
Q ss_conf 98876799888899999999519977899499999999999999999999984898899995488778997306587992
Q 000524 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1073 (1444)
Q Consensus 994 ~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~ll~ 1073 (1444)
.+ ..||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++. .++|+|+++|+++ ....+|++++|+
T Consensus 151 ~g-~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l~ 226 (255)
T d2hyda1 151 RG-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVIE 226 (255)
T ss_dssp GG-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEEE
T ss_pred CC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEE
T ss_conf 88-9849999999999999855998999837654479779999999999875-3888999968999--998599999998
Q ss_pred CCCEEEEECCC
Q ss_conf 59499998489
Q 000524 1074 RGGQEIYVGPL 1084 (1444)
Q Consensus 1074 ~gG~~vy~G~~ 1084 (1444)
+ |+++..|+.
T Consensus 227 ~-G~iv~~G~~ 236 (255)
T d2hyda1 227 N-GHIVETGTH 236 (255)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
T ss_conf 9-999998899
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.2e-45 Score=303.03 Aligned_cols=216 Identities=23% Similarity=0.336 Sum_probs=174.1
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 24883116566144023210544785488450178772891999965799955789964518978963799999959027
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 925 (1444)
.|+|+|++|+|+.. ....+|+|||+.+++||++||+|+||||||||+++|.|... +.+|+|.+||.+.
T Consensus 11 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEECCCC----------CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 69999989988999----------99976744389984998999999999849999999861437--8768998899853
Q ss_pred CC---CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHH-----HHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 81---1223258997048988998758799999877119999998899999-----999999939941110112699887
Q 000524 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMF-----IEEVMELVELKPLIQSLVGLPGVS 997 (1444)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~-----v~~vl~~l~L~~~~~~~vg~~~~~ 997 (1444)
.. ..+++.++||+|+...++ .||+|++.|+.. ........... ..+.++ .|..-.++.++..+ .
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~----~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~~-~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLT----QKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEAG-S 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCS----SCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSSC-S
T ss_pred CHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCCC-C
T ss_conf 11013788877654045650027-634655454210----1302788999999998999998--56121113675167-6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCC
Q ss_conf 67998888999999995199778994999999999999999999999848-98899995488778997306587992594
Q 000524 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 998 glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~i~ll~~gG 1076 (1444)
.||||||||++||++|+.+|+||+||||||+||+.+...|++.++++.+. |+|+|+++|+++ ..+.+|++++|++ |
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~-G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEG-G 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEET-T
T ss_pred CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEEEC-C
T ss_conf 689547048998604456870787167576568536899999999976506989999959799--9985999999989-9
Q ss_pred EEEEECCC
Q ss_conf 99998489
Q 000524 1077 QEIYVGPL 1084 (1444)
Q Consensus 1077 ~~vy~G~~ 1084 (1444)
+++..|+.
T Consensus 228 ~iv~~Gt~ 235 (251)
T d1jj7a_ 228 AIREGGTH 235 (251)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
T ss_conf 99998899
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.2e-44 Score=297.94 Aligned_cols=212 Identities=24% Similarity=0.329 Sum_probs=174.8
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 24883116566144023210544785488450178772891999965799955789964518978963799999959027
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 925 (1444)
.|+|+|++|+++. ....+|+|||+.+++|+.+||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 13 ~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 79 (253)
T d3b60a1 13 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDL 79 (253)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEET
T ss_pred EEEEEEEEEEECC-----------CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCCCC
T ss_conf 7999988999299-----------99763533289985999999999999859999999862168--8846898788012
Q ss_pred CC---CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC-------CCCCCCCC
Q ss_conf 81---122325899704898899875879999987711999999889999999999993994111-------01126998
Q 000524 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLPG 995 (1444)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~-------~~~vg~~~ 995 (1444)
.. ..+++.++||+|+..++ ..|+++++.+.. +...+.+ .++++++..++.+.. ++.+|..
T Consensus 80 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~----~~~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~~~~- 149 (253)
T d3b60a1 80 REYTLASLRNQVALVSQNVHLF-NDTVANNIAYAR----TEEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGEN- 149 (253)
T ss_dssp TTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTT----TSCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred CHHHHHHHHHEEEEEEECCCCC-CCCHHHHHHHCC----CCCCCHH----HHHHHHHHHHHHHHHHHCCCCCHHHHCCC-
T ss_conf 1110665420687995025447-862024332057----2208999----99999999817999973554410143488-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECC
Q ss_conf 87679988889999999951997789949999999999999999999998489889999548877899730658799259
Q 000524 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1075 (1444)
Q Consensus 996 ~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~ll~~g 1075 (1444)
...||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++.+ ++|+|+++|+++ ..+.+|++++|.+
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~~- 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVED- 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCEEEEEEC-
T ss_conf 898499999999999999549988995164445898899999999987522-788999988799--9985999999989-
Q ss_pred CEEEEECCC
Q ss_conf 499998489
Q 000524 1076 GQEIYVGPL 1084 (1444)
Q Consensus 1076 G~~vy~G~~ 1084 (1444)
|+++..|+.
T Consensus 226 G~Iv~~G~~ 234 (253)
T d3b60a1 226 GIIVERGTH 234 (253)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5.6e-45 Score=301.85 Aligned_cols=193 Identities=23% Similarity=0.369 Sum_probs=173.1
Q ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCC-CCCCEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 0178772891999965799955789964518978963799999959027811-223258997048988998758799999
Q 000524 877 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLLY 955 (1444)
Q Consensus 877 ~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f 955 (1444)
|||+.+. +|.++|+||||||||||+++|+|... +.+|+|.++|.+.... ..+|.+|||+|++.++|.+||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCC--CCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-97999997999809999999973999--89628999999988699899285225231443522015576665
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 87711999999889999999999993994111011269988767998888999999995199778994999999999999
Q 000524 956 SAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035 (1444)
Q Consensus 956 ~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~sa~ 1035 (1444)
+. + ..+..+++++++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HH--C---CCCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 32--3---3677889999999998638375665794-----448999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 999999999848-9889999548877899730658799259499998489
Q 000524 1036 IVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1036 ~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~i~ll~~gG~~vy~G~~ 1084 (1444)
.+++.++++.+. |.|||+++|++. ++.+.+|++++|.+ |+++..|.+
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999998743976999818999-99996999999989-999999069
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.4e-45 Score=307.09 Aligned_cols=211 Identities=27% Similarity=0.421 Sum_probs=172.2
Q ss_pred EEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 48831165661440232105447854884501787728919999657999557899645189789637999999590278
Q 000524 847 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 926 (1444)
Q Consensus 847 i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 926 (1444)
++++||+|+|+. .+.+|+|||+.++||+++||+||||||||||+++|+|... +.+|+|.+||.+..
T Consensus 2 le~knvsf~Y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYDD------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSSS------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECCC------------CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCEEEC
T ss_conf 799988998799------------9841422589985999999999999979999999999609--89877988998844
Q ss_pred C---CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCCC
Q ss_conf 1---12232589970489889987587999998771199999988999999999999399-------4111011269988
Q 000524 927 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL-------KPLIQSLVGLPGV 996 (1444)
Q Consensus 927 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L-------~~~~~~~vg~~~~ 996 (1444)
. ..+++.++||+|++.+++. |++|++.+.. ....+.+. +++.++..++ ....++.+|..+
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGL----EGDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCT----TSCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred CCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCC----CCCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf 24678887436797566545785-3454301244----55542356----77899999755542037421015236878-
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCC
Q ss_conf 76799888899999999519977899499999999999999999999984898899995488778997306587992594
Q 000524 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1076 (1444)
Q Consensus 997 ~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~ll~~gG 1076 (1444)
..||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++. .|+|+|+++|+++ ....+|++++|.+ |
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEEC-C
T ss_conf 9879999999999999852998999658865569889999988788871-7998999978799--9984999999989-9
Q ss_pred EEEEECCCC
Q ss_conf 999984898
Q 000524 1077 QEIYVGPLG 1085 (1444)
Q Consensus 1077 ~~vy~G~~g 1085 (1444)
+++..|+..
T Consensus 214 ~iv~~G~~~ 222 (242)
T d1mv5a_ 214 QITGSGKHN 222 (242)
T ss_dssp EECCCSCHH
T ss_pred EEEEECCHH
T ss_conf 999999999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.4e-43 Score=292.84 Aligned_cols=198 Identities=22% Similarity=0.350 Sum_probs=156.7
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 13752105688488499997699996899999984699999980119999784189987552189974788878999999
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1444)
Q Consensus 165 ~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~r~~aYv~Q~D~~~~~lTVr 244 (1444)
.++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++| .++||+|+...++ .||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCS-EEHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECCCCCCC-CEEE
T ss_conf 76773759998599999999899982999999995797478---82899999----------9999816430267-6032
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99998656117883356768988986640999999978999998732233557999999991994323443447556556
Q 000524 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1444)
Q Consensus 245 EtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rgL 324 (1444)
||+.|+..... .+++ +..+. .+....+..+.+..+|.+|.... .|
T Consensus 115 eni~~~~~~~~--~~~~---~~~~~-----------------------------~~~~~~i~~l~~~~~~~~~~~~~-~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYDE--YRYK---SVVKA-----------------------------CQLQQDITKFAEQDNTVLGEGGV-TL 159 (281)
T ss_dssp HHHTTTSCCCH--HHHH---HHHHH-----------------------------TTCHHHHTTSTTGGGCEECTTCT-TS
T ss_pred CCCCCCCCCCC--HHHH---HHHHH-----------------------------HHHHHHHHHCHHHHHHHHHHHCC-CC
T ss_conf 14203334560--5799---99999-----------------------------77699998461233235555423-77
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEE
Q ss_conf 64454579999997249853513359989998989999999999877049979999835900488312759997298299
Q 000524 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1444)
Q Consensus 325 SGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~IilL~~G~iv 404 (1444)
||||||||++|++++.+|++++|||||++||+.+..+|++.+.... ..++|+|+ ++|.. +....+|+|++|.+|+++
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~-~~~~tvi~-itH~~-~~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRIL-VTSKM-EHLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC-TTTSEEEE-ECSCH-HHHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEE-EECHH-HHHHHCCEEEEEECCEEE
T ss_conf 9999999999999986963513338554489899999999999886-28999999-92528-999859999999899999
Q ss_pred EECCHHHHHH
Q ss_conf 9618555999
Q 000524 405 YQGPRELVLE 414 (1444)
Q Consensus 405 y~Gp~~~~~~ 414 (1444)
++|++++++.
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHC
T ss_conf 9878999960
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.9e-41 Score=275.58 Aligned_cols=187 Identities=20% Similarity=0.351 Sum_probs=151.7
Q ss_pred EEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCHHH
Q ss_conf 48845017877289199996579995578996451897896379999995902781122325899704898899875879
Q 000524 872 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 951 (1444)
Q Consensus 872 ~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 951 (1444)
.++|+|||+.+++|+++||+||||||||||+++|+|... +.+|.|.++|. ++||+|+..+++ .||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCS-EEHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCE----------EEEEECCCCCCC-CEEEC
T ss_conf 767737599985999999998999829999999957974--78828999999----------999816430267-60321
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 99998771199999988999999999999-------39941110112699887679988889999999951997789949
Q 000524 952 SLLYSAWLRLPPEVDSETRKMFIEEVMEL-------VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1024 (1444)
Q Consensus 952 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~-------l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDE 1024 (1444)
++.|+.. .+... .+++++. ..+....++.+|..+ ..||||||||++||++|+.+|+||+|||
T Consensus 116 ni~~~~~------~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 116 NIIFGVS------YDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHTTTSC------CCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTTC-TTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred CCCCCCC------CCCHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 4203334------56057----99999997769999846123323555542-3779999999999999986963513338
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 9999999999999999999984898899995488778997306587992594999984898
Q 000524 1025 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1085 (1444)
Q Consensus 1025 PTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~ll~~gG~~vy~G~~g 1085 (1444)
||++||+.+...+++.+......++|+|+++|++ +....+|++++|.+ |++++.|+..
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~-G~i~~~Gt~~ 242 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQ-GSSYFYGTFS 242 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEET-TEEEEEECHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCEEEEEEC-CEEEEECCHH
T ss_conf 5544898999999999998862899999992528--99985999999989-9999987899
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.1e-41 Score=276.42 Aligned_cols=193 Identities=23% Similarity=0.360 Sum_probs=144.4
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCC---CCCCEEEEEECCCCCCCCCCHH
Q ss_conf 8450178772891999965799955789964518978963799999959027811---2232589970489889987587
Q 000524 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDIHSPFVTVY 950 (1444)
Q Consensus 874 iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~d~~~~~lTv~ 950 (1444)
.|++||+.+++||++||+||||||||||+++|+|... .+|+|.++|.+.... ..+...+|+.|+.......++.
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHH
T ss_conf 5558888994898999998999809999999948879---9559999999998699899986402451213577442098
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCEEEEE
Q ss_conf 99999877119999998899999999999939941110112699887679988889999999951-------99778994
Q 000524 951 ESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1023 (1444)
Q Consensus 951 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~-------~p~il~lD 1023 (1444)
+.+.+... . +.+.+.++++++.+++.+..+..+ +.||||||||++||++|+. +|++|+||
T Consensus 91 ~~~~~~~~----~----~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQH----D----KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCS----C----TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHCCC----H----HHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 87641001----4----668999999998659876767684-----4569988999999999985171338998899971
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 9999999999999999999998489889999548877899730658799259499998489
Q 000524 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1024 EPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~ll~~gG~~vy~G~~ 1084 (1444)
|||+|||..++..+++.++++.+.|.|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~-G~iv~~G~~ 216 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 216 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEET-TEECCCSBH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 877778989999999999999867999999967799-99997999999979-989998899
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-39 Score=267.08 Aligned_cols=198 Identities=24% Similarity=0.326 Sum_probs=166.2
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCC
Q ss_conf 375210568848849999769999689999998469999998011999978418998755---21899747888789999
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMT 242 (1444)
Q Consensus 166 ~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~---r~~aYv~Q~D~~~~~lT 242 (1444)
+.|++||+.+++||+++|+||||||||||+++|+|..+ . +|+|.++|.++....++ +..+|++|+.......+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~-~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-G---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC-C---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC-C---CEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCC
T ss_conf 15558888994898999998999809999999948879-9---5599999999986998999864024512135774420
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999986561178833567689889866409999999789999987322335579999999919943234434475565
Q 000524 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1444)
Q Consensus 243 VrEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~r 322 (1444)
+.+++.+...-+. ....++.+++.++|++..+..++
T Consensus 89 v~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~l~~~~~~~~~----- 124 (231)
T d1l7vc_ 89 VWHYLTLHQHDKT---------------------------------------RTELLNDVAGALALDDKLGRSTN----- 124 (231)
T ss_dssp HHHHHHHHCSCTT---------------------------------------CHHHHHHHHHHTTCTTTTTSBGG-----
T ss_pred HHHHHHHCCCHHH---------------------------------------HHHHHHHHHHHCCCHHHHCCCHH-----
T ss_conf 9887641001466---------------------------------------89999999986598767676844-----
Q ss_pred CCCHHHHHHHHHHHHHHC-------CCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEE
Q ss_conf 566445457999999724-------9853513359989998989999999999877049979999835900488312759
Q 000524 323 GISGGERKRVTTGEMMVG-------PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1444)
Q Consensus 323 gLSGGQRkRvsiaeaLv~-------~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~I 395 (1444)
.|||||||||++|++++. +|++++|||||+|||..++..+.+.++++.. .+.|+++ .+|...++..++|+|
T Consensus 125 ~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~-vtHdl~~~~~~~dri 202 (231)
T d1l7vc_ 125 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVM-SSHDLNHTLRHAHRA 202 (231)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEE-CCCCHHHHHHHCSBC
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHHHHHCCEE
T ss_conf 56998899999999998517133899889997187777898999999999999986-7999999-967799999979999
Q ss_pred EEECCCEEEEECCHHHHH
Q ss_conf 997298299961855599
Q 000524 396 ILLSDGQIVYQGPRELVL 413 (1444)
Q Consensus 396 ilL~~G~ivy~Gp~~~~~ 413 (1444)
++|.+|++++.|+.+++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHH
T ss_conf 999799899988999981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=9.4e-39 Score=261.90 Aligned_cols=196 Identities=20% Similarity=0.269 Sum_probs=154.9
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 24883116566144023210544785488450178772891999965799955789964518978963799999959027
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 925 (1444)
.++++|+++.++ +.+|+|||+.+++|++++|+||||||||||+++|+|... +.+|+|.+||.+.
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEEEC--------------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEH
T ss_conf 599998999939--------------928842088985998999999999719999999966205--6778899998962
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 81122325899704898899875879999987711999999889999999999993994111011269988767998888
Q 000524 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 1005 (1444)
Q Consensus 926 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1005 (1444)
.. .+...+|++|+..+...+|++|++.+.+.++... .+.+ .+.+.++.+++.+... .+ ..|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~-~~-----~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNKN----EIMDALESVEVLDLKK-KL-----GELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCHH----HHHHHHHHTTCCCTTS-BG-----GGSCHHHHH
T ss_pred HH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC-CCHH----HHHHHHHHCCCCCCCC-CC-----CCCCCCHHH
T ss_conf 67--3670899950135788828999999999754886-3799----9999998748856301-26-----868971888
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEEC
Q ss_conf 999999995199778994999999999999999999999848988999954887789973065879925
Q 000524 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 1006 Rl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~ll~~ 1074 (1444)
|+.||++|+.+|++++|||||+|||..++..+++.++++.+.+.++|+++|+. .+.+|.+..|.+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH----HHHCCHHHHEEE
T ss_conf 89999988649989998686201699999999999999986799999999162----544161234010
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6.7e-37 Score=250.03 Aligned_cols=184 Identities=19% Similarity=0.253 Sum_probs=149.7
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 13752105688488499997699996899999984699999980119999784189987552189974788878999999
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1444)
Q Consensus 165 ~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~r~~aYv~Q~D~~~~~lTVr 244 (1444)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++|. +|+|.+||.++.+. +..++|++|+..+...+|++
T Consensus 14 ~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~ 88 (200)
T d1sgwa_ 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVE 88 (200)
T ss_dssp SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHHH--CCCEEEEEECCCCCCCCCHH
T ss_conf 92884208898599899999999971999999996620567---78899998962673--67089995013578882899
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99998656117883356768988986640999999978999998732233557999999991994323443447556556
Q 000524 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1444)
Q Consensus 245 EtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rgL 324 (1444)
|++.+.+...+.... .+ .+...++.+++.+. +..++ .|
T Consensus 89 ~~l~~~~~~~~~~~~---------------------~~---------------~~~~~l~~~~~~~~-~~~~~-----~L 126 (200)
T d1sgwa_ 89 DYLKAVASLYGVKVN---------------------KN---------------EIMDALESVEVLDL-KKKLG-----EL 126 (200)
T ss_dssp HHHHHHHHHTTCCCC---------------------HH---------------HHHHHHHHTTCCCT-TSBGG-----GS
T ss_pred HHHHHHHHHCCCCCC---------------------HH---------------HHHHHHHHCCCCCC-CCCCC-----CC
T ss_conf 999999975488637---------------------99---------------99999987488563-01268-----68
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 6445457999999724985351335998999898999999999987704997999983590048831275999729
Q 000524 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 325 SGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~IilL~~ 400 (1444)
|||||||+.+|++++.+|++++|||||+|||..++..+++.|+++.+. ++++|++.||.. +++|.+..|.+
T Consensus 127 SgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECHH----HHCCHHHHEEE
T ss_conf 971888899999886499899986862016999999999999999867-999999991625----44161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.37 E-value=1.1e-14 Score=107.63 Aligned_cols=80 Identities=16% Similarity=0.060 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCE
Q ss_conf 799888899999999519977899499999999999999999999984-8988999954887789973065879925949
Q 000524 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1077 (1444)
Q Consensus 999 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~i~ll~~gG~ 1077 (1444)
+++|+++|..++.++..+|.++++|||+...+ .....+..+.++.+ .+.++++++|+.+ .....|++..+. +|+
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~ 156 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIRD--VHPLVKEIRRLP-GAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSSC--CSHHHHHHHTCT-TCE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHHHHCCCCCEEEEEECCHH--HHHHHCEEEEEE-CCE
T ss_conf 53201378999999740997423027773100--4579999999875057978999974477--898636599871-999
Q ss_pred EEEECC
Q ss_conf 999848
Q 000524 1078 EIYVGP 1083 (1444)
Q Consensus 1078 ~vy~G~ 1083 (1444)
++.-++
T Consensus 157 i~~v~~ 162 (178)
T d1ye8a1 157 LIELTP 162 (178)
T ss_dssp EEECCT
T ss_pred EEEECC
T ss_conf 999899
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.32 E-value=2.7e-13 Score=98.81 Aligned_cols=158 Identities=13% Similarity=0.048 Sum_probs=96.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCCC--EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 9997699996899999984699999980119999784189987552--18997478887899999999998656117883
Q 000524 181 TLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER--TAAYISQHDNHIGEMTVRETLAFSARCQGVGS 258 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~r--~~aYv~Q~D~~~~~lTVrEtL~Faa~~~g~~~ 258 (1444)
.+|.||||||||||+++|+|.+++. .|.+...+.+......+. .+.+...........+..+...+ .
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 71 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLV--------G 71 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEE--------T
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCC---CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
T ss_conf 9999899938999999998148888---6469987713288887653112336677788754113455443--------0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 35676898898664099999997899999873223355799999999199432344344755655664454579999997
Q 000524 259 RYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338 (1444)
Q Consensus 259 ~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rgLSGGQRkRvsiaeaL 338 (1444)
+ ..+ +.....+++|+++|.++++++
T Consensus 72 ~------------------------------------------------------~~~-~~~~~~~~~~~~~~~~l~~~~ 96 (178)
T d1ye8a1 72 S------------------------------------------------------YGV-NVQYFEELAIPILERAYREAK 96 (178)
T ss_dssp T------------------------------------------------------EEE-CHHHHHHHHHHHHHHHHHHHH
T ss_pred H------------------------------------------------------HHC-CCCHHHHHHHHHHHHHHHHHH
T ss_conf 2------------------------------------------------------303-762566532013789999997
Q ss_pred HCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 2498535133599899989899999999998770499799998359004883127599972982999618
Q 000524 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1444)
Q Consensus 339 v~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~IilL~~G~ivy~Gp 408 (1444)
...|+++++|||.... ......+..+.+.....+.+++++.|+. +...+.|++..+.+|+++.-++
T Consensus 97 ~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 97 KDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTCEEEECCT
T ss_pred HCCCCCEEECCCCCCC--HHHHHHHHHHHHHHCCCCCEEEEEECCH--HHHHHHCEEEEEECCEEEEECC
T ss_conf 4099742302777310--0457999999987505797899997447--7898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.14 E-value=1.6e-09 Score=74.62 Aligned_cols=72 Identities=21% Similarity=0.215 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHHHHHH----HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEE
Q ss_conf 767998888999999995----199778994999999999999999999999848988999954887789973065879
Q 000524 997 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1071 (1444)
Q Consensus 997 ~glSgGqrkRl~ia~~L~----~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~l 1071 (1444)
..+|.|||+.+.++..+. .+|++++.|||-++|++.....+.+.++..++ +..+++|+|.| ++.+.+|++..
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~~ 293 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLHG 293 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCH--HHHHHCCCEEE
T ss_conf 102577766777776655654226744554320335797899999999998554-88799998988--99973242899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.95 E-value=2.3e-09 Score=73.54 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEE
Q ss_conf 76799888899999999----51997789949999999999999999999998489889999548877899730658799
Q 000524 997 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1072 (1444)
Q Consensus 997 ~glSgGqrkRl~ia~~L----~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~ll 1072 (1444)
.-+|||||.++++|.-+ ..++++++||||+++||......+.+.|++++..+..+|+|+|+| ++.+..|+++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878--999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.94 E-value=1.4e-08 Score=68.47 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=60.4
Q ss_pred CCCCCHHHHHHHHHHHH----HHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEE
Q ss_conf 65566445457999999----72498535133599899989899999999998770499799998359004883127599
Q 000524 321 IRGISGGERKRVTTGEM----MVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1444)
Q Consensus 321 ~rgLSGGQRkRvsiaea----Lv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~Ii 396 (1444)
...+|+|||....++.. ...++++++.|||-++|++.....+.+.|++.+. +.-+++ ..|+|++.+.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~Qvii--tTHsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIV--ITHNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEE--ECCCTTGGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCEEEE--EECCHHHHHHCCCEE
T ss_conf 1102577766777776655654226744554320335797899999999998554--887999--989889997324289
Q ss_pred E--ECCC
Q ss_conf 9--7298
Q 000524 397 L--LSDG 401 (1444)
Q Consensus 397 l--L~~G 401 (1444)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEECC
T ss_conf 9999699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=2.1e-07 Score=61.00 Aligned_cols=74 Identities=16% Similarity=0.295 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHHHH----HCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEE
Q ss_conf 55664454579999997----24985351335998999898999999999987704997999983590048831275999
Q 000524 322 RGISGGERKRVTTGEMM----VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1444)
Q Consensus 322 rgLSGGQRkRvsiaeaL----v~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~Iil 397 (1444)
+-+|||||.++++|-.+ +.++++++||||.++||+.....+.+.|++++. .+.-+|++. |.|++.+.+|.++.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iT--H~~~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVIS--LKNTMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEEC--SCHHHHTTCSEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEE--CCHHHHHHCCCEEE
T ss_conf 332230479999999999954799977999688777899999999999999728-998899995--87899973661799
Q ss_pred E
Q ss_conf 7
Q 000524 398 L 398 (1444)
Q Consensus 398 L 398 (1444)
.
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.97 E-value=1.8e-05 Score=48.67 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=17.4
Q ss_pred EECEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 521056884884999976999968999999846
Q 000524 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG 200 (1444)
Q Consensus 168 L~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG 200 (1444)
|+++.+=++||++++|.|+||+|||||+.-++-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 888746978980899994799979999999997
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.89 E-value=0.00015 Score=42.76 Aligned_cols=155 Identities=14% Similarity=0.101 Sum_probs=73.8
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCC--CCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCHHH
Q ss_conf 845017877289199996579995578996451897--896379999995902781122325899704898899875879
Q 000524 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK--TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 951 (1444)
Q Consensus 874 iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~--~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 951 (1444)
-|+++.+-++||+++.|.|++|+||||++.-++-.. ..| .-+.|+.- ..+..+
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g-------------------~~v~~~s~------E~~~~~ 78 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-------------------KKVGLAML------EESVEE 78 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC-------------------CCEEEEES------SSCHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCEEEEEE------CCCHHH
T ss_conf 68887469789808999947999799999999972655336-------------------63457640------111135
Q ss_pred HH-HHHH-HHCCCCCCCHHHHH-----HHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99-9987-71199999988999-----9999999993-994111011269988767998888999999995199778994
Q 000524 952 SL-LYSA-WLRLPPEVDSETRK-----MFIEEVMELV-ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023 (1444)
Q Consensus 952 ~l-~f~a-~lr~~~~~~~~~~~-----~~v~~vl~~l-~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lD 1023 (1444)
.. .+.+ ....+.......+. ...++.++.+ +....... .........+.....-...--.+|+++++|
T Consensus 79 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~vvID 154 (277)
T d1cr2a_ 79 TAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLY----DSFAEAETDRLLAKLAYMRSGLGCDVIILD 154 (277)
T ss_dssp HHHHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEE----CCC-CCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEE----CCCCCHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 7769999864587101012222214567788898874035214662----143310689999986543213676259970
Q ss_pred CC-----CCCCC--HHHHHHHHHHHHHHHHC-CCEEEEEECC
Q ss_conf 99-----99999--99999999999999848-9889999548
Q 000524 1024 EP-----TSGLD--ARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1057 (1444)
Q Consensus 1024 EP-----TsgLD--~~sa~~i~~~l~~~~~~-g~tvi~t~Hq 1057 (1444)
-- ..+-+ ......+++.++++|++ +++|+++.|-
T Consensus 155 ~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~ 196 (277)
T d1cr2a_ 155 HISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (277)
T ss_dssp EEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 542120346544306778999999999765016552031035
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.84 E-value=0.00039 Score=40.08 Aligned_cols=62 Identities=8% Similarity=0.155 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 888899999999519977899499999999999999-9999999848988999954887789973
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV-MRTVRNTVDTGRTVVCTIHQPGIDIFDA 1065 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i-~~~l~~~~~~g~tvi~t~Hqps~~i~~~ 1065 (1444)
.|-+|+.-....+.+.+++++||.-+|=|+.....+ ...+..+.+.+..+++++|.. ++.++
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHHH
T ss_conf 8678898775028977278554545686233200258888888862376137865202--33322
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.73 E-value=0.00019 Score=42.10 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHC-CCEEEEEECCCC
Q ss_conf 88889999999951997789949999999999999999-99999848-988999954887
Q 000524 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDT-GRTVVCTIHQPG 1059 (1444)
Q Consensus 1002 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~-~l~~~~~~-g~tvi~t~Hqps 1059 (1444)
.|-+|+.-......+.+++++||+-+|=++.....+.. .+..+... +..+++|+|...
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 999999999974546608853222358774566678987645432045442898524687
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.73 E-value=0.00077 Score=38.19 Aligned_cols=28 Identities=32% Similarity=0.614 Sum_probs=18.8
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 68848849999769999689999998469
Q 000524 173 GIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 173 g~i~pG~lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
|.+ ||++++|.|+||+|||||+..|+-.
T Consensus 25 G~~-pg~~~~i~G~~G~GKS~l~l~la~~ 52 (274)
T d1nlfa_ 25 NMV-AGTVGALVSPGGAGKSMLALQLAAQ 52 (274)
T ss_dssp TEE-TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCC-CCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 955-8958999928999899999999999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.73 E-value=0.00017 Score=42.32 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=36.6
Q ss_pred HHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEEECCCHHHHHH
Q ss_conf 57999999724985351335998999898999999-999987704997999983590048831
Q 000524 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CLKQHVHINSGTAVISLLQPAPETYDL 391 (1444)
Q Consensus 330 kRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~-~Lr~~a~~~~~tvIisl~Qp~~e~~~l 391 (1444)
+|++-.-...+..++.++||+.+|-|+.....+.. .+..+.. .+.+++++.|.+ ++..+
T Consensus 103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCH--HHHTC
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHH-CCCCEEEEEECH--HHHHH
T ss_conf 8898775028977278554545686233200258888888862-376137865202--33322
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.66 E-value=0.00021 Score=41.74 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=20.9
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 568848849999769999689999998469
Q 000524 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 172 sg~i~pG~lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.|-+++|++++|.|+||||||+|+.-++-.
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 689869849999918999999999999999
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.0011 Score=37.26 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=32.3
Q ss_pred HCCCCCCEEECCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEEECC
Q ss_conf 249853513359989998989999999-9998770499799998359
Q 000524 339 VGPALALFMDEISTGLDSSTTFQIVNC-LKQHVHINSGTAVISLLQP 384 (1444)
Q Consensus 339 v~~~~vLlLDEpTsGLDs~ta~~Iv~~-Lr~~a~~~~~tvIisl~Qp 384 (1444)
.++.+++++||+-+|-++.....+... +..+.......++++.|.+
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 54660885322235877456667898764543204544289852468
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.48 E-value=4.7e-05 Score=45.95 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=23.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEE
Q ss_conf 8849999769999689999998469999998011999
Q 000524 177 PGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVT 213 (1444)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~ 213 (1444)
+|+.++++|+||.|||||+|+|.|...-. +|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH---CCCCC
T ss_conf 69808997889877888877305355501---06842
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.28 E-value=1e-04 Score=43.86 Aligned_cols=27 Identities=44% Similarity=0.565 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 884999976999968999999846999
Q 000524 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
.|++.+|.|||||||||+.+.|+.++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.13 E-value=0.00011 Score=43.48 Aligned_cols=27 Identities=37% Similarity=0.699 Sum_probs=23.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 849999769999689999998469999
Q 000524 178 GRMTLLLGPPASGKTTLLLALAGKLDS 204 (1444)
Q Consensus 178 G~lt~IlGpsGSGKSTLL~~LaG~l~~ 204 (1444)
|++..|+||||||||||.+.|..+.+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.00012 Score=43.43 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999769999689999998469999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLDS 204 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~~ 204 (1444)
+++|.|+||||||||++.|+.++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.05 E-value=5.5e-05 Score=45.50 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=24.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEE
Q ss_conf 8849999769999689999998469999998011999
Q 000524 177 PGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVT 213 (1444)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~ 213 (1444)
.|+.++++|+||.|||||+|+|.|...- .+|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~---~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGL---RTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHH---HHCCCC
T ss_conf 3564999877873487898751517676---403555
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00013 Score=43.14 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=21.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4884999976999968999999846999
Q 000524 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
..+++..|+|||||||||+.+.|+.++.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9871899989999898999999999869
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.98 E-value=0.0074 Score=31.88 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=12.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHH
Q ss_conf 877289199996579995578996
Q 000524 880 GAFRPGVLTALMGVSGAGKTTLMD 903 (1444)
Q Consensus 880 ~~i~pG~~~al~G~sGaGKTTLl~ 903 (1444)
|-+++|+++.|.|++|+|||+|..
T Consensus 21 GGi~~G~~~~I~G~~G~GKT~la~ 44 (242)
T d1tf7a1 21 GGLPIGRSTLVSGTSGTGKTLFSI 44 (242)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHH
T ss_conf 899698399999479999999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.95 E-value=0.00026 Score=41.15 Aligned_cols=26 Identities=27% Similarity=0.635 Sum_probs=23.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89199996579995578996451897
Q 000524 884 PGVLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 884 pG~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
+|..++++|+||+|||||++.|.+..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 69808997889877888877305355
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.0078 Score=31.75 Aligned_cols=154 Identities=20% Similarity=0.228 Sum_probs=74.4
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCHHHH
Q ss_conf 88450178772891999965799955789964518978963799999959027811223258997048988998758799
Q 000524 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYES 952 (1444)
Q Consensus 873 ~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~ 952 (1444)
.++.+ +.||+++.|.|++|+|||||+--|+-....|. . ..+..... ...+-|+.-++.. -.+.+-
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~---~--~~~~~~~~---~~~vl~~~~E~~~---~~~~~R 85 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIAGGP---D--LLEVGELP---TGPVIYLPAEDPP---TAIHHR 85 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHHTCC---C--TTCCCCCC---CCCEEEEESSSCH---HHHHHH
T ss_pred HHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC---C--CCCCCCCC---CCCEEEEECCCHH---HHHHHH
T ss_conf 98689----55895899992899989999999999997699---7--21112357---8736898512349---999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC---C-
Q ss_conf 999877119999998899999999999939941110112699887679988889999999951997789949999---9-
Q 000524 953 LLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS---G- 1028 (1444)
Q Consensus 953 l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTs---g- 1028 (1444)
+ .+.. .+.+.... ....+.+.+.+..+... ....-... .--.....+|.++++|--+. +
T Consensus 86 l--~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~lvviD~l~~~~~~~ 148 (274)
T d1nlfa_ 86 L--HALG---AHLSAEER----QAVADGLLIQPLIGSLP-----NIMAPEWF---DGLKRAAEGRRLMVLDTLRRFHIEE 148 (274)
T ss_dssp H--HHHH---TTSCHHHH----HHHHHHEEECCCTTSCC-----CTTSHHHH---HHHHHHHTTCSEEEEECGGGGCCSC
T ss_pred H--HHHH---HCCCHHHH----HCCCCCCEECCCCCCCC-----HHHHHHHH---HHHHHHCCCCCEEECCCHHHHCCCC
T ss_conf 9--9986---23686665----31233323214567420-----35789999---9988752676589628135422665
Q ss_pred -CCHHHHHHHHHHHHHHHHC-CCEEEEEECCC
Q ss_conf -9999999999999999848-98899995488
Q 000524 1029 -LDARAAAIVMRTVRNTVDT-GRTVVCTIHQP 1058 (1444)
Q Consensus 1029 -LD~~sa~~i~~~l~~~~~~-g~tvi~t~Hqp 1058 (1444)
-|......+++.++.++.. +++++++.|..
T Consensus 149 ~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 149 ENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 23225689999887777644797540131005
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.00022 Score=41.72 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=26.1
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 56884884999976999968999999846999
Q 000524 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 172 sg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
.|=++||+++.|.||||||||||+.-++....
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 58985997999995899999999999999998
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.84 E-value=0.00029 Score=40.93 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999976999968999999846999
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
++.+|.|||||||||+.+.|+.+++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.84 E-value=0.00031 Score=40.67 Aligned_cols=26 Identities=38% Similarity=0.437 Sum_probs=23.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999769999689999998469999
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l~~ 204 (1444)
+..++.||||+|||||.++|++.+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.83 E-value=0.00026 Score=41.22 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999976999968999999846999
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
+..+|.||||||||||.+.|+.++.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.00044 Score=39.74 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=21.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 884999976999968999999846999
Q 000524 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
.|.+..|+||||||||||.+.|.-+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.81 E-value=0.00022 Score=41.66 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=20.8
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 7877289199996579995578996451897
Q 000524 879 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 879 s~~i~pG~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
...++.|.-+.+.|+.||||||+|++|.+..
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 9999837888999403566257899986530
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.80 E-value=0.00043 Score=39.79 Aligned_cols=28 Identities=32% Similarity=0.344 Sum_probs=21.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4884999976999968999999846999
Q 000524 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
+.|.+..|.|+|||||||+-++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.80 E-value=0.00084 Score=37.92 Aligned_cols=65 Identities=20% Similarity=0.159 Sum_probs=38.7
Q ss_pred EEEC-EEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 7521-0568848849999769999689999998469999998011999978418998755218997478
Q 000524 167 ILKD-VSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQH 234 (1444)
Q Consensus 167 IL~~-vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~r~~aYv~Q~ 234 (1444)
-|++ +.|-+++|++|.|.|+||+|||||..-++-..-.. .....+.-.........+.+.|+.-+
T Consensus 22 ~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~e 87 (258)
T d2i1qa2 22 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNP---EFLFYDEEAVSKGEVAQPKAVYIDTE 87 (258)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCG---GGEECCTTTSCTTTTSSEEEEEEESS
T ss_pred HHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHC---CCCCEEEEECCCCHHCCCEEEEEEEC
T ss_conf 8997207986288599999179999899999999999853---79743775300310038519999956
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.80 E-value=0.00033 Score=40.50 Aligned_cols=28 Identities=36% Similarity=0.590 Sum_probs=22.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4884999976999968999999846999
Q 000524 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
++|--.+|.|||||||||+.+.|+-+++
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.78 E-value=0.00036 Score=40.28 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=22.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9199996579995578996451897
Q 000524 885 GVLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 885 G~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
|.++.|+||||||||||++.|..+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7499998999999999999998458
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.76 E-value=0.00024 Score=41.42 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999769999689999998469999
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l~~ 204 (1444)
++..|.|++|||||||+..|..++..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 09999809999899999999999986
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.0062 Score=32.38 Aligned_cols=27 Identities=41% Similarity=0.664 Sum_probs=19.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 884999976999968999999846999
Q 000524 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
+.+-+++.||||+|||++.++||..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 888678668998882289999999829
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.73 E-value=0.00048 Score=39.46 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999968999999846999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
+++|.||+|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.70 E-value=0.00058 Score=38.94 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999769999689999998469
Q 000524 179 RMTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
++..|.||||||||||.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999999999999995
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.69 E-value=0.00045 Score=39.70 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=11.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+|+|+||+|||||+++|.|+
T Consensus 26 I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHCCC
T ss_conf 999899998799999985298
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.66 E-value=0.00049 Score=39.45 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=18.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 84999976999968999999846999
Q 000524 178 GRMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 178 G~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
.++..|.|+|||||||+.+.|+.++.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.63 E-value=0.0007 Score=38.43 Aligned_cols=27 Identities=41% Similarity=0.609 Sum_probs=20.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488499997699996899999984699
Q 000524 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~~LaG~l 202 (1444)
++|--..++|||||||||.-+.||-++
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.62 E-value=0.00034 Score=40.47 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=23.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4884999976999968999999846999
Q 000524 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
+.+.+..|+|||||||||+.+.|+-++.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 6782899989999987999999999869
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.61 E-value=0.00047 Score=39.55 Aligned_cols=30 Identities=33% Similarity=0.450 Sum_probs=25.0
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 568848849999769999689999998469
Q 000524 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 172 sg~i~pG~lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.|=+++|+++.|.||||||||||..-++-.
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 799869969999838999889999999998
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.61 E-value=0.00062 Score=38.78 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=23.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89199996579995578996451897
Q 000524 884 PGVLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 884 pG~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.|+++.|.|++||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.60 E-value=0.00055 Score=39.11 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999976999968999999846999
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
.+.+|+|||||||||+.+.|+.++.
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999998999999999859
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.57 E-value=0.00072 Score=38.35 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499997699996899999984699
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l 202 (1444)
.+.+|+|||||||||+.+.|+-++
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 489998999998899999999997
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.55 E-value=0.00068 Score=38.51 Aligned_cols=23 Identities=52% Similarity=0.583 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999968999999846999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
.+|.|||||||||+.+.|+-++.
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98989999998999999999979
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.54 E-value=0.00032 Score=40.60 Aligned_cols=26 Identities=46% Similarity=0.677 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999769999689999998469999
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l~~ 204 (1444)
+.++|.||||+|||||++.++..+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 69999889997199999999999997
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.51 E-value=0.016 Score=29.71 Aligned_cols=35 Identities=29% Similarity=0.472 Sum_probs=27.8
Q ss_pred CEEEECE-EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1375210-5688488499997699996899999984
Q 000524 165 LTILKDV-SGIIKPGRMTLLLGPPASGKTTLLLALA 199 (1444)
Q Consensus 165 ~~IL~~v-sg~i~pG~lt~IlGpsGSGKSTLL~~La 199 (1444)
..-|+++ +|=+++|+++.|.|+||+|||+|..-++
T Consensus 12 i~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 12 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 377988556899698399999479999999999999
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.00076 Score=38.21 Aligned_cols=22 Identities=45% Similarity=0.517 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
+++|+|++|||||||++.|+.+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.45 E-value=0.0057 Score=32.61 Aligned_cols=24 Identities=50% Similarity=0.737 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999968999999846999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
-.++.||||+|||+|.++|+..+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.44 E-value=0.0023 Score=35.13 Aligned_cols=27 Identities=44% Similarity=0.593 Sum_probs=21.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 884999976999968999999846999
Q 000524 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
|-+-+++.||||+|||++.++||..+.
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 980799889699988999999862010
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.43 E-value=0.00085 Score=37.91 Aligned_cols=28 Identities=39% Similarity=0.446 Sum_probs=22.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 5688488499997699996899999984
Q 000524 172 SGIIKPGRMTLLLGPPASGKTTLLLALA 199 (1444)
Q Consensus 172 sg~i~pG~lt~IlGpsGSGKSTLL~~La 199 (1444)
.|=+++|++++|.||||||||||..-++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.37 E-value=0.00092 Score=37.67 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.+||+|++|+|||||++.|.|+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.37 E-value=0.0012 Score=36.92 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=19.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8849999769999689999998469
Q 000524 177 PGRMTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
+-++.+++|+|||||||+.+.|+..
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999899999999976
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.00098 Score=37.50 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89199996579995578996451897
Q 000524 884 PGVLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 884 pG~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.|.++.|+||||+|||||++.|.-+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 98099999999999999999998639
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.35 E-value=0.00037 Score=40.21 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=23.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89199996579995578996451897
Q 000524 884 PGVLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 884 pG~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.|..++++|+||+|||||++.|.+..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 35649998778734878987515176
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.35 E-value=0.02 Score=29.08 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=27.9
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 5688488499997699996899999984699999
Q 000524 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205 (1444)
Q Consensus 172 sg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~ 205 (1444)
...++.+.-.+|.||.||||||||++|.+..++.
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 9999837888999403566257899986530145
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.33 E-value=0.00094 Score=37.63 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=26.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCC
Q ss_conf 8849999769999689999998469999998011999978418
Q 000524 177 PGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM 219 (1444)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~ 219 (1444)
|+.-.+++||||+|||.|.++||..+.. --+.+++.++
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~-----~~~~i~~s~~ 85 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKF 85 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC-----CEEEEEGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCC-----CHHCCCCCCC
T ss_conf 9866999899998888999998621322-----1000344330
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.0013 Score=36.76 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999968999999846999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
..+|+|||||||||..+.|+-++.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999979999998999999999869
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.32 E-value=0.0013 Score=36.75 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999769999689999998469999
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l~~ 204 (1444)
++.+|-|+|||||||+.+.|+-++..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 88999899998989999999999987
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.00074 Score=38.29 Aligned_cols=25 Identities=40% Similarity=0.493 Sum_probs=15.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8499997699996899999984699
Q 000524 178 GRMTLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 178 G~lt~IlGpsGSGKSTLL~~LaG~l 202 (1444)
|....+.|+|||||||+-+.|+-++
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9699988999999999999999999
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=6.6e-05 Score=45.01 Aligned_cols=33 Identities=21% Similarity=0.152 Sum_probs=24.6
Q ss_pred EECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5210568848849999769999689999998469
Q 000524 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 168 L~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.++.+..+.|| +|+|.||+||||||+|.||.--
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 70279974998-0899889999879999999999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.29 E-value=0.0012 Score=36.89 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999968999999846999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
..|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.28 E-value=0.0011 Score=37.11 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997699996899999984699
Q 000524 180 MTLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l 202 (1444)
.++|+|+|++|||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.24 E-value=0.0012 Score=36.95 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999968999999846999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
..|+|||||||||+.+.|+-++.
T Consensus 6 I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.24 E-value=0.0013 Score=36.65 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=24.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 289199996579995578996451897
Q 000524 883 RPGVLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 883 ~pG~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
+.|.++.|.|+|||||||+-+.|+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.0013 Score=36.63 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=23.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 289199996579995578996451897
Q 000524 883 RPGVLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 883 ~pG~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.22 E-value=0.0087 Score=31.43 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=10.2
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99965799955789964518
Q 000524 888 TALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lag 907 (1444)
+.|-||+|+|||+|.+++|+
T Consensus 44 iLL~Gp~GtGKT~l~~ala~ 63 (265)
T d1r7ra3 44 VLFYGPPGCGKTLLAKAIAN 63 (265)
T ss_dssp EEEBCCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHH
T ss_conf 78878998763047788787
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.0012 Score=36.85 Aligned_cols=29 Identities=31% Similarity=0.281 Sum_probs=23.6
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 56884884999976999968999999846
Q 000524 172 SGIIKPGRMTLLLGPPASGKTTLLLALAG 200 (1444)
Q Consensus 172 sg~i~pG~lt~IlGpsGSGKSTLL~~LaG 200 (1444)
.|=+++|++++|.||||||||+|..-++.
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69976897999988998878899999999
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.21 E-value=0.0019 Score=35.63 Aligned_cols=44 Identities=20% Similarity=0.380 Sum_probs=32.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 9999769999689999998469999998011999978418998755218997478
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQH 234 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~r~~aYv~Q~ 234 (1444)
=.+++||+|+|||-|.+.||+.++- --+..+....+ .+|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC----------CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCEEE------ECCEEECC
T ss_conf 4799899998899999999987389-----88986255114------11111044
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.20 E-value=0.0013 Score=36.67 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699996899999984699
Q 000524 181 TLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l 202 (1444)
.+++|+||+|||||+++|.|+.
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999988999999996898
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.17 E-value=0.0014 Score=36.54 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999769999689999998469999
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l~~ 204 (1444)
++..|+|||||||+||++.|..+.+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~ 29 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPD 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 71999998999999999999970976
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.17 E-value=0.025 Score=28.50 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=35.8
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEE
Q ss_conf 9999951997789949999999999999999999998489889999548877899730658
Q 000524 1009 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDEL 1069 (1444)
Q Consensus 1009 ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i 1069 (1444)
+..+|=.+|.+++..|.. |..++...+ +.|.+|..|+.|+|-.+. +..++++
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~a--~~~~~Rl 271 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNTA--VGAVTRL 271 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSSS--HHHHHHH
T ss_pred HHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCCH--HHHHHHH
T ss_conf 999984138889845768---759999999----997249858998336766--7665432
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.0012 Score=36.95 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=13.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999769999689999998469
Q 000524 179 RMTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
...+|.||||||||||++.|...
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~ 77 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGML 77 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 28974389999899999999999
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.15 E-value=0.0011 Score=37.26 Aligned_cols=20 Identities=40% Similarity=0.710 Sum_probs=9.9
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99965799955789964518
Q 000524 888 TALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lag 907 (1444)
+||+|++++|||||++.|+|
T Consensus 4 VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEE
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999879999999968
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.12 E-value=0.0015 Score=36.31 Aligned_cols=24 Identities=42% Similarity=0.625 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999968999999846999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
..++-||||+||||+.++||..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.12 E-value=0.0018 Score=35.81 Aligned_cols=21 Identities=43% Similarity=0.686 Sum_probs=10.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+|+|++|+|||||++.|.|.
T Consensus 3 V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999899999999677
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.11 E-value=0.0012 Score=36.93 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999968999999846999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
-.+|+|||||||||+-+.|+-++.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 699988999987999999999979
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.11 E-value=0.0011 Score=37.09 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999769999689999998469999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLDS 204 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~~ 204 (1444)
-..|+||||||||||++.|+.+.+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.10 E-value=0.0017 Score=35.91 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=23.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 289199996579995578996451897
Q 000524 883 RPGVLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 883 ~pG~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
++|-.++|+|++||||||+.+.|+.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.09 E-value=0.0019 Score=35.66 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
++++|++|+|||||+++|.|.
T Consensus 11 V~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999778
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.09 E-value=0.0017 Score=35.89 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999968999999846999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
..|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999987999999999879
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.09 E-value=0.0017 Score=35.93 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997699996899999984699
Q 000524 180 MTLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l 202 (1444)
-.+|+|.+|+|||||+|+|.|+-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=8.6e-05 Score=44.27 Aligned_cols=32 Identities=28% Similarity=0.251 Sum_probs=27.0
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 845017877289199996579995578996451
Q 000524 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS 906 (1444)
Q Consensus 874 iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~La 906 (1444)
-+++.++.+.+| ++.|+|+|||||||+|++|.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 870279974998-08998899998799999999
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.0014 Score=36.48 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999968999999846999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
...+.|||||||||+-+.||-++.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.06 E-value=0.0012 Score=36.88 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=25.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEECCC
Q ss_conf 99996579995578996451897-89637999999590
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK-TGGYITGNITISGY 923 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~-~~~~~~G~i~i~g~ 923 (1444)
..+|+|++|||||||+..|..+. ..|..-|.|.-+++
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 99998099998999999999999867983799983167
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.04 E-value=0.0022 Score=35.24 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999976999968999999846999
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
.+.+++|.|||||||+.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.02 E-value=0.0015 Score=36.25 Aligned_cols=29 Identities=38% Similarity=0.673 Sum_probs=24.4
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 84884999976999968999999846999
Q 000524 175 IKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 175 i~pG~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
+++.+-.++-||||+|||+|.+++|+.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99887578878998763047788787718
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.99 E-value=0.0022 Score=35.31 Aligned_cols=24 Identities=38% Similarity=0.325 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999968999999846999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
+.+|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.97 E-value=0.0022 Score=35.24 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999968999999846999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
.+|+|.||+|||||+|+|.|.-.
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999978999999958886
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.97 E-value=0.031 Score=27.89 Aligned_cols=153 Identities=18% Similarity=0.140 Sum_probs=77.1
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 7877289199996579995578996451897-896379999995902781122325899704898899875879999987
Q 000524 879 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRK-TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 957 (1444)
Q Consensus 879 s~~i~pG~~~al~G~sGaGKTTLl~~Lag~~-~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a 957 (1444)
.|-+.+|.++.|.|++|+|||+|..-++-.. ..+ ....|+.-+ .+..+......
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~-------------------~~~~~is~e------~~~~~~~~~~~ 74 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVENACANK-------------------ERAILFAYE------ESRAQLLRNAY 74 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTT-------------------CCEEEEESS------SCHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC-------------------CCCCEEECC------CCHHHHHHHHH
T ss_conf 68986984999991899999999999999998723-------------------244112126------79999999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHCCCEEEEECCCC---CCCHHH
Q ss_conf 7119999998899999999999939941110112699887679988889999999-951997789949999---999999
Q 000524 958 WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVE-LVANPSIIFMDEPTS---GLDARA 1033 (1444)
Q Consensus 958 ~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~-L~~~p~il~lDEPTs---gLD~~s 1033 (1444)
.+. . +.. +. ...+.....+... ......+.- -.|... --.+|.+++.|--+. +.+...
T Consensus 75 ~~~--~--~~~-------~~-~~~~~~~~~~~~~-----~~~~~~~~~-~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~ 136 (242)
T d1tf7a2 75 SWG--M--DFE-------EM-ERQNLLKIVCAYP-----ESAGLEDHL-QIIKSEINDFKPARIAIDSLSALARGVSNNA 136 (242)
T ss_dssp TTS--C--CHH-------HH-HHTTSEEECCCCG-----GGSCHHHHH-HHHHHHHHTTCCSEEEEECHHHHTSSSCHHH
T ss_pred HCC--C--CHH-------HH-HHCCCEEEEEEEC-----CHHHHHHHH-HHHHHHHHHCCCCEEEEECCHHHHCCCCHHH
T ss_conf 829--9--869-------98-5458617997300-----010179999-9999999840885332204314304899999
Q ss_pred HHHHHHHHHHHHH-CCCEEEEEECCC---------CHHHHHHCCEEEEEEC
Q ss_conf 9999999999984-898899995488---------7789973065879925
Q 000524 1034 AAIVMRTVRNTVD-TGRTVVCTIHQP---------GIDIFDAFDELFLMKR 1074 (1444)
Q Consensus 1034 a~~i~~~l~~~~~-~g~tvi~t~Hqp---------s~~i~~~fD~i~ll~~ 1074 (1444)
....+..+.++++ .+.+++++.|.. +..+....|.++.|..
T Consensus 137 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 137 FRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 999999999999986983999985675125544577640464216999998
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0014 Score=36.54 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999968999999846999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
+.+|.|||||||+|+-+.|+.++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.95 E-value=0.0023 Score=35.14 Aligned_cols=22 Identities=36% Similarity=0.680 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699996899999984699
Q 000524 181 TLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l 202 (1444)
..|+|||||||||+.+.|+-++
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999899999999996
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.95 E-value=0.0023 Score=35.14 Aligned_cols=23 Identities=57% Similarity=0.842 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999968999999846999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
..|+|||||||||+-+.|+-++.
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999997999999999989
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.0021 Score=35.41 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999968999999846999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
..++|||||||||..+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99987999998999999999869
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.92 E-value=0.002 Score=35.58 Aligned_cols=75 Identities=16% Similarity=0.280 Sum_probs=39.7
Q ss_pred HCCCEEEEECC----------CCCCCHHHHHHHHHHHHHHH---HC-CCEEEEEECCCCHHHHHHCCEEEEEECC--CEE
Q ss_conf 19977899499----------99999999999999999998---48-9889999548877899730658799259--499
Q 000524 1015 ANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV---DT-GRTVVCTIHQPGIDIFDAFDELFLMKRG--GQE 1078 (1444)
Q Consensus 1015 ~~p~il~lDEP----------TsgLD~~sa~~i~~~l~~~~---~~-g~tvi~t~Hqps~~i~~~fD~i~ll~~g--G~~ 1078 (1444)
..|.|||+||- .++-+......+...+..+- .. +.-+|+|+.+|. ..|.-++ ..| .+.
T Consensus 100 ~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~-----~ld~al~-R~~Rf~~~ 173 (247)
T d1ixza_ 100 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD-----ILDPALL-RPGRFDRQ 173 (247)
T ss_dssp SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG-----GSCGGGG-STTSSCEE
T ss_pred CCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC-----CCCHHHC-CCCCCCEE
T ss_conf 69979999773664746789988875899999999999963877789989998079940-----0699675-89878579
Q ss_pred EEECCCCCCHHHHHHHHHH
Q ss_conf 9984898650479999981
Q 000524 1079 IYVGPLGRHSCQLISYFEA 1097 (1444)
Q Consensus 1079 vy~G~~g~~~~~~~~yF~~ 1097 (1444)
++++++... ...+.++.
T Consensus 174 i~~~~P~~~--eR~~il~~ 190 (247)
T d1ixza_ 174 IAIDAPDVK--GREQILRI 190 (247)
T ss_dssp EECCSCCHH--HHHHHHHH
T ss_pred EEECCCCHH--HHHHHHHH
T ss_conf 997996999--99999998
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.91 E-value=0.0024 Score=35.05 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999657999557899645189
Q 000524 886 VLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 886 ~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.-+.|.||+|+|||++.+.||..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 07998896999889999998620
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.0027 Score=34.63 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=32.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 9999769999689999998469999998011999978418998755218997478887899
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGE 240 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~r~~aYv~Q~D~~~~~ 240 (1444)
+.+|.|+|||||||+-+.|...+... .....+..++++|.|.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHH-----------------CCCCCEEEEEEEEEECCC
T ss_conf 99996899998768999999997304-----------------689965999521568984
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.89 E-value=0.0021 Score=35.32 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999968999999846999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
..|+||||||||||.+.|+.+.+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.87 E-value=0.0021 Score=35.44 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++|.|++|+|||||.+.|+.+.
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998999999999984
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.0032 Score=34.23 Aligned_cols=80 Identities=20% Similarity=0.327 Sum_probs=41.3
Q ss_pred HHHHHHCCCEEEEECCCC----------CCCHHHHHHHHHHHHHHH---HC-CCEEEEEECCCCHHHHHHCCEEEEEECC
Q ss_conf 999951997789949999----------999999999999999998---48-9889999548877899730658799259
Q 000524 1010 AVELVANPSIIFMDEPTS----------GLDARAAAIVMRTVRNTV---DT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1075 (1444)
Q Consensus 1010 a~~L~~~p~il~lDEPTs----------gLD~~sa~~i~~~l~~~~---~~-g~tvi~t~Hqps~~i~~~fD~i~ll~~g 1075 (1444)
..+--..|.|||+||-=+ +-+......+...+..+- .. +.-+|+|+.+|.. .|.-++ ..|
T Consensus 98 ~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~-----ld~al~-R~g 171 (256)
T d1lv7a_ 98 EQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV-----LDPALL-RPG 171 (256)
T ss_dssp HHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTT-----SCGGGG-STT
T ss_pred HHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC-----CCHHHC-CCC
T ss_conf 99997599899997756657567898888748999999999999538777799899980799310-----798576-898
Q ss_pred --CEEEEECCCCCCHHHHHHHHHH
Q ss_conf --4999984898650479999981
Q 000524 1076 --GQEIYVGPLGRHSCQLISYFEA 1097 (1444)
Q Consensus 1076 --G~~vy~G~~g~~~~~~~~yF~~ 1097 (1444)
.+.++++++... .-.+.+..
T Consensus 172 Rfd~~i~i~~P~~~--~R~~il~~ 193 (256)
T d1lv7a_ 172 RFDRQVVVGLPDVR--GREQILKV 193 (256)
T ss_dssp SSCEEEECCCCCHH--HHHHHHHH
T ss_pred CCCEEEECCCCCHH--HHHHHHHH
T ss_conf 78779877995999--99999998
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.85 E-value=0.0018 Score=35.84 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699996899999984699
Q 000524 181 TLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l 202 (1444)
++|+|+|++|||||++.|+|..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999987999999996899
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.85 E-value=0.0029 Score=34.48 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999968999999846999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
..+|-|||||||||.-+.||-++.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.83 E-value=0.0023 Score=35.11 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
-++|+|++|+|||||++.|.|++
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.003 Score=34.35 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=17.8
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 877289199996579995578996451
Q 000524 880 GAFRPGVLTALMGVSGAGKTTLMDVLS 906 (1444)
Q Consensus 880 ~~i~pG~~~al~G~sGaGKTTLl~~La 906 (1444)
|-+++|.++.+.|++|+|||||.-.++
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~ 75 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVI 75 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 996673589980577747899999999
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.82 E-value=0.0024 Score=35.04 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999968999999846999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
=.++-||||+|||+|.++++....
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 468766998883089999998748
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.81 E-value=0.0021 Score=35.34 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965799955789964518
Q 000524 887 LTALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag 907 (1444)
.+++.|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.81 E-value=0.0019 Score=35.71 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
++|+|+|++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.003 Score=34.35 Aligned_cols=24 Identities=38% Similarity=0.756 Sum_probs=14.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 919999657999557899645189
Q 000524 885 GVLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 885 G~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
|-.++++|++++|||||++.|.|+
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.80 E-value=0.0034 Score=34.02 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=11.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++|+|.+|+|||||++.|.|+
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.80 E-value=0.0025 Score=34.87 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=14.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999769999689999998469
Q 000524 179 RMTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
....|.||||+|||||+..|...
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 59861179988899999999998
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.79 E-value=0.0034 Score=34.03 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=22.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9199996579995578996451897
Q 000524 885 GVLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 885 G~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
+-.+|++|.+|+|||||++.|.|..
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.77 E-value=0.003 Score=34.39 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999769999689999998469
Q 000524 180 MTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
-.+|+|+||+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.75 E-value=0.003 Score=34.35 Aligned_cols=24 Identities=50% Similarity=0.765 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999769999689999998469999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLDS 204 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~~ 204 (1444)
.++-||||+||||+.++|+..+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 898799997388999999850388
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.0038 Score=33.76 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=10.2
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999657999557899645189
Q 000524 888 TALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lag~ 908 (1444)
++|+|.+++|||||++.|.|.
T Consensus 8 I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999979999899999999589
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.73 E-value=0.0032 Score=34.22 Aligned_cols=23 Identities=48% Similarity=0.586 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999968999999846999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
..|+|+|||||||+.+.||.++.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999988999999999839
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.72 E-value=0.0032 Score=34.18 Aligned_cols=22 Identities=59% Similarity=0.821 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699996899999984699
Q 000524 181 TLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l 202 (1444)
.++.||||+||||+.++++..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997899974879999999998
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.72 E-value=0.0022 Score=35.25 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=26.2
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 787728919999657999557899645189
Q 000524 879 SGAFRPGVLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 879 s~~i~pG~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.|-++||+++.|.|++|+|||||..-++..
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 589859979999958999999999999999
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.70 E-value=0.0019 Score=35.67 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=21.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999769999689999998469999
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l~~ 204 (1444)
++..|.|+|||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=0.0041 Score=33.54 Aligned_cols=23 Identities=43% Similarity=0.713 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997699996899999984699
Q 000524 180 MTLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l 202 (1444)
-.+++|+|++|||||++.|.|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998999998999999996888
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.70 E-value=0.0034 Score=34.06 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999968999999846999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
..++|+|||||||+-+.||-++.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999949
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.64 E-value=0.0027 Score=34.71 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699996899999984699
Q 000524 181 TLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l 202 (1444)
.+|+|++|+|||||++.|.+..
T Consensus 16 I~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 16 LVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999996788
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.64 E-value=0.0036 Score=33.87 Aligned_cols=21 Identities=33% Similarity=0.286 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+|+|+|.+|||||+++|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.61 E-value=0.003 Score=34.38 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
++||-|++|||||||.+.|+.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9997898878999999999998
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.60 E-value=0.0034 Score=34.06 Aligned_cols=23 Identities=52% Similarity=0.780 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999968999999846999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
+++-||||+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.56 E-value=0.0037 Score=33.81 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++++|++|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.55 E-value=0.0035 Score=33.93 Aligned_cols=21 Identities=43% Similarity=0.547 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+|+|+||+|||||++.|.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999659
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=0.0042 Score=33.45 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999769999689999998469
Q 000524 180 MTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
..+++|.|++|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.54 E-value=0.0044 Score=33.33 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=17.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88499997699996899999984699
Q 000524 177 PGRMTLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~~LaG~l 202 (1444)
.++.++|.||+|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.53 E-value=0.0033 Score=34.16 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996579995578996451897
Q 000524 888 TALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
+.|+||||||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999748
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.0039 Score=33.65 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996579995578996451897
Q 000524 886 VLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 886 ~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++.|+||||+||+||++-|..+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.53 E-value=0.0045 Score=33.29 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699996899999984699
Q 000524 181 TLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l 202 (1444)
.+++|++|+|||||++.|.+..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHCCCC
T ss_conf 9999999989999999980899
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.53 E-value=0.0036 Score=33.89 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996579995578996451897
Q 000524 886 VLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 886 ~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
-.+||+|.+|+|||||+|.|.|..
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 179998999997899999995888
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.51 E-value=0.0023 Score=35.09 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999968999999846999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
..++|+|||||||+-+.||.++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.50 E-value=0.0034 Score=34.02 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999965799955789964518978
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRKT 910 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~~ 910 (1444)
.++|+|++|+|||||++.|.+...
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~ 28 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSV 28 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999889999999967999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.50 E-value=0.0037 Score=33.84 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++|+|.+|+|||||+|.|.|+.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.0049 Score=33.02 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=29.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 999976999968999999846999999801199997841899875521899747888789
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIG 239 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~r~~aYv~Q~D~~~~ 239 (1444)
+.+|-||+||||||+-+.|+-.+... + .. .....+..++++|.|.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~----~--------~~--~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQN----E--------VD--YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG----G--------SC--GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHH----C--------CC--CCCCCEEEEECCCCCCC
T ss_conf 99998999787999999999996410----1--------34--57884399934653224
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.47 E-value=0.0041 Score=33.53 Aligned_cols=22 Identities=45% Similarity=0.540 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699996899999984699
Q 000524 181 TLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l 202 (1444)
.+++|+|++|||||++.|.+..
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.46 E-value=0.0043 Score=33.41 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 1999965799955789964518
Q 000524 886 VLTALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 886 ~~~al~G~sGaGKTTLl~~Lag 907 (1444)
.++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.45 E-value=0.0047 Score=33.14 Aligned_cols=23 Identities=39% Similarity=0.600 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997699996899999984699
Q 000524 180 MTLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l 202 (1444)
..+|+|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.44 E-value=0.0044 Score=33.32 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996579995578996451897
Q 000524 886 VLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 886 ~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++.|.|++||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 089998999999899999999980
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.41 E-value=0.0048 Score=33.09 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9199996579995578996451897
Q 000524 885 GVLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 885 G~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
..++.|.|++||||||+.+.|+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 8599998999999899999999972
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.40 E-value=0.0047 Score=33.12 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999769999689999998469
Q 000524 180 MTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
..+|+|++.||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.0025 Score=34.94 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++|+|.+++|||||++.|.+.+
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899998999999985898
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.39 E-value=0.0059 Score=32.51 Aligned_cols=27 Identities=33% Similarity=0.334 Sum_probs=22.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 849999769999689999998469999
Q 000524 178 GRMTLLLGPPASGKTTLLLALAGKLDS 204 (1444)
Q Consensus 178 G~lt~IlGpsGSGKSTLL~~LaG~l~~ 204 (1444)
...++|.||||+||||+++.|+..+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 881688898999899999999999754
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.37 E-value=0.0033 Score=34.10 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996579995578996451897
Q 000524 888 TALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
+||+|.+++|||||++.|.|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.37 E-value=0.004 Score=33.56 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.+.|+|++||||||+.+.|+.+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.35 E-value=0.0067 Score=32.15 Aligned_cols=26 Identities=42% Similarity=0.515 Sum_probs=18.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88499997699996899999984699
Q 000524 177 PGRMTLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~~LaG~l 202 (1444)
.|.+..+.|.|||||||+.+.|+-++
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98699998999999899999999887
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.33 E-value=0.0027 Score=34.73 Aligned_cols=25 Identities=44% Similarity=0.504 Sum_probs=22.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8919999657999557899645189
Q 000524 884 PGVLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 884 pG~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.|.++.|.|++||||||+-+.|+.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9969998899999999999999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.33 E-value=0.0042 Score=33.47 Aligned_cols=21 Identities=48% Similarity=0.615 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999657999557899645189
Q 000524 888 TALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lag~ 908 (1444)
+.|+||||+|||||++.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.31 E-value=0.0046 Score=33.23 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997699996899999984699
Q 000524 180 MTLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l 202 (1444)
-.+++|+|++|||||+++|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899998999999985898
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.29 E-value=0.0051 Score=32.90 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699996899999984699
Q 000524 181 TLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l 202 (1444)
.+++|+||+|||||++.+.+.-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989999999996798
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.27 E-value=0.0056 Score=32.65 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699996899999984699
Q 000524 181 TLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l 202 (1444)
.+|+|.||||||||++.|.+.-
T Consensus 18 I~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 18 VIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999996688
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.0051 Score=32.91 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
++||-|++||||||+-+.|+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978799999999999
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.25 E-value=0.0057 Score=32.58 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999657999557899645189
Q 000524 886 VLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 886 ~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++.|+||+||||||+-+.|+..
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 48999899999889999999999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.23 E-value=0.0059 Score=32.50 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=22.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 28919999657999557899645189
Q 000524 883 RPGVLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 883 ~pG~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
++|-.+.|+||+||||||+-+.|+.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.17 E-value=0.019 Score=29.20 Aligned_cols=34 Identities=29% Similarity=0.264 Sum_probs=19.6
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 75210568848849999769999689999998469
Q 000524 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 167 IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+|.. ...-.|.=+++.|+||+|||||...|..+
T Consensus 5 ~~H~~-~v~~~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGV-LLEVFGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEE-EEEETTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEE-EEEECCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 17899-99999999999818999989999999985
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.09 E-value=0.0026 Score=34.77 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999769999689999998469999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLDS 204 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~~ 204 (1444)
-+++.||||+|||||.+.+++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 0899889985299999999873798
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.08 E-value=0.0056 Score=32.65 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++|+|++|+|||||++.|.+..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996788
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.04 E-value=0.007 Score=32.03 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=21.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999976999968999999846999
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
-+.+|-|+.||||||+++.|+..++
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.0057 Score=32.60 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=23.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 849999769999689999998469999
Q 000524 178 GRMTLLLGPPASGKTTLLLALAGKLDS 204 (1444)
Q Consensus 178 G~lt~IlGpsGSGKSTLL~~LaG~l~~ 204 (1444)
+++.+|=|+.||||||+++.|+.+++.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~~ 28 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCED 28 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 988999878887799999999999735
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.97 E-value=0.0085 Score=31.50 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=18.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4884999976999968999999846999
Q 000524 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
+.|.+.++-|+.||||||+.+.|+..+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.95 E-value=0.0065 Score=32.25 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8919999657999557899645189
Q 000524 884 PGVLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 884 pG~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
..-.++|.|++|||||||++.|...
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~ 77 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGML 77 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8328974389999899999999999
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.91 E-value=0.0082 Score=31.58 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9199996579995578996451897
Q 000524 885 GVLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 885 G~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
-.++.|+||+||||||+.+.|+...
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.91 E-value=0.0074 Score=31.89 Aligned_cols=28 Identities=43% Similarity=0.399 Sum_probs=23.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4884999976999968999999846999
Q 000524 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
+.++..++.||||+|||++.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.0066 Score=32.21 Aligned_cols=22 Identities=41% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.+.|.|++|+|||||++.++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889997199999999999
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.90 E-value=0.0084 Score=31.53 Aligned_cols=22 Identities=50% Similarity=0.902 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699996899999984699
Q 000524 181 TLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l 202 (1444)
.++-||||+||||+.++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.89 E-value=0.028 Score=28.19 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.86 E-value=0.018 Score=29.42 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=18.2
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 568848849999769999689999998469
Q 000524 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 172 sg~i~pG~lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
+...-.|+=+++.|+||+|||||...|..+
T Consensus 8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 8 VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999999808999989999999985
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.83 E-value=0.023 Score=28.73 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=21.8
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 75210568848849999769999689999998469
Q 000524 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 167 IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
-||. +.....|.=+++.|+||+|||||...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.82 E-value=0.019 Score=29.24 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999769999689999998469
Q 000524 180 MTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
-++|+|.|.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999789999899999999778
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.82 E-value=0.0081 Score=31.63 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.+||.||+||||||+-+.|+..
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9997899987989999999999
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.82 E-value=0.0051 Score=32.93 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999968999999846999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
+.++.||||+||||++++++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899678999899999999999987
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=94.81 E-value=0.015 Score=29.84 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=20.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 289199996579995578996451897
Q 000524 883 RPGVLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 883 ~pG~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.|.-.+.+.||+|+|||.|.+.||+..
T Consensus 121 ~~~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 121 YASGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 688638887799850889999999986
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.80 E-value=0.0082 Score=31.61 Aligned_cols=23 Identities=26% Similarity=0.396 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999657999557899645189
Q 000524 886 VLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 886 ~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.+++|.|++||||||+.+.|+.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999899998989999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.79 E-value=0.011 Score=30.75 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=11.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999769999689999998469
Q 000524 179 RMTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
+..+++||+|+||||.+-=||.+
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999889999999999
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.72 E-value=0.0099 Score=31.06 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999968999999846999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
.++-||||+||||+.++++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.68 E-value=0.0091 Score=31.31 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=26.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEEC
Q ss_conf 89199996579995578996451897-896379999995
Q 000524 884 PGVLTALMGVSGAGKTTLMDVLSGRK-TGGYITGNITIS 921 (1444)
Q Consensus 884 pG~~~al~G~sGaGKTTLl~~Lag~~-~~~~~~G~i~i~ 921 (1444)
..-.++|.|++|||||||++.|.... ..|..-|-|.++
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 815986117998889999999999876368751344346
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.68 E-value=0.013 Score=30.29 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999968999999846999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
.+++|++.+|||||+++|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99993458849999999970344
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.67 E-value=0.01 Score=31.01 Aligned_cols=23 Identities=43% Similarity=0.791 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999968999999846999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
.++-||||+||||+.++++..+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.67 E-value=0.0071 Score=31.98 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=25.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 78772891999965799955789964518
Q 000524 879 SGAFRPGVLTALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 879 s~~i~pG~~~al~G~sGaGKTTLl~~Lag 907 (1444)
.|-+++|+++.|.|++|+|||||.--++-
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79986996999983899988999999999
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.63 E-value=0.008 Score=31.65 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=25.5
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 78772891999965799955789964518
Q 000524 879 SGAFRPGVLTALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 879 s~~i~pG~~~al~G~sGaGKTTLl~~Lag 907 (1444)
.|-+++|+++.|.|++|+||||+..-++-
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 79862885999991799998999999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.013 Score=30.39 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=21.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 884999976999968999999846999
Q 000524 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
.|++.++-|+.||||||+.+.|+.++.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.58 E-value=0.0083 Score=31.55 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.+.|+||+||||||+.+.|+.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889999989999999998
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.56 E-value=0.0092 Score=31.26 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 1999965799955789964518978
Q 000524 886 VLTALMGVSGAGKTTLMDVLSGRKT 910 (1444)
Q Consensus 886 ~~~al~G~sGaGKTTLl~~Lag~~~ 910 (1444)
..+.|.||+|+|||||.+.|++...
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999889799889999999999865
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.55 E-value=0.011 Score=30.87 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.54 E-value=0.01 Score=30.92 Aligned_cols=21 Identities=57% Similarity=0.703 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|++|+|||||++.|.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998999999999648
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.52 E-value=0.013 Score=30.32 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999769999689999998469
Q 000524 180 MTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
..+|+|..+||||||+++|.|.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~ 47 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGR 47 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCHHHHHHHHHCC
T ss_conf 5999818989799999999689
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.52 E-value=0.015 Score=29.84 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=22.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 884999976999968999999846999
Q 000524 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
|....+++||+|+|||.|.+.||-.+.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 765899977875006999999986336
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.51 E-value=0.0092 Score=31.27 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
-+||+|...||||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.50 E-value=0.0095 Score=31.19 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996579995578996451897
Q 000524 888 TALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
+.|+|++||||||+.+.||.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.45 E-value=0.01 Score=31.05 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.+.|.|++||||||+-+.|+-+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.43 E-value=0.013 Score=30.29 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999976999968999999846
Q 000524 180 MTLLLGPPASGKTTLLLALAG 200 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG 200 (1444)
+.+|.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.012 Score=30.63 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.+.|+||+||||||..+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.35 E-value=0.0089 Score=31.36 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=22.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 28919999657999557899645189
Q 000524 883 RPGVLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 883 ~pG~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
+.+.++.|+||+||||||+.+.|+.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 67828999899999879999999998
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.35 E-value=0.0087 Score=31.43 Aligned_cols=28 Identities=32% Similarity=0.566 Sum_probs=24.0
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 7877289199996579995578996451
Q 000524 879 SGAFRPGVLTALMGVSGAGKTTLMDVLS 906 (1444)
Q Consensus 879 s~~i~pG~~~al~G~sGaGKTTLl~~La 906 (1444)
.|-+++|+++.|.|++|+|||||.--++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.34 E-value=0.015 Score=30.00 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 28919999657999557899645189
Q 000524 883 RPGVLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 883 ~pG~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
+.|.++-+.|.||||||||.+.|+.+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99869999899999989999999988
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.33 E-value=0.015 Score=29.98 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 891999965799955789964518
Q 000524 884 PGVLTALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 884 pG~~~al~G~sGaGKTTLl~~Lag 907 (1444)
.-+++.++|++||||||+.+-++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989999989999999997
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.33 E-value=0.013 Score=30.22 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
++|+|.|.+|||||+++|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 768899999899999999788
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.31 E-value=0.011 Score=30.74 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.30 E-value=0.013 Score=30.42 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999657999557899645189
Q 000524 886 VLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 886 ~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++.++|.+|+||||+.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999999999999999
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.30 E-value=0.01 Score=31.00 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
-++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.29 E-value=0.012 Score=30.62 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
++||.|+|||||||+-+.|...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHH
T ss_conf 9999689999876899999999
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.26 E-value=0.0026 Score=34.75 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=11.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|+|++|||||+++|.|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999589
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.26 E-value=0.0072 Score=31.94 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=30.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 99997699996899999984699999980119999784189987552189974788878
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHI 238 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~r~~aYv~Q~D~~~ 238 (1444)
+.+|.|+|||||||+.++|...+.. .| -.++.++|+|.|-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~----~~---------------v~~~iI~~Dsfyr 45 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRR----EG---------------VKAVSIEGDAFHR 45 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHH----HT---------------CCEEEEEGGGGBS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH----CC---------------CCEEEEECCCCCC
T ss_conf 9999899978099999999999715----69---------------9769994777875
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.21 E-value=0.011 Score=30.79 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.+.|+|++|+|||||++.|.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.21 E-value=0.012 Score=30.44 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=14.3
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 877289199996579995578996451
Q 000524 880 GAFRPGVLTALMGVSGAGKTTLMDVLS 906 (1444)
Q Consensus 880 ~~i~pG~~~al~G~sGaGKTTLl~~La 906 (1444)
|-++.|.++.+.|++|+|||||.-.++
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 986663369996488748899999999
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.21 E-value=0.012 Score=30.51 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996579995578996451897
Q 000524 888 TALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
+.|+|++||||||+-+.||.+.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999994
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.20 E-value=0.012 Score=30.52 Aligned_cols=19 Identities=37% Similarity=0.396 Sum_probs=9.6
Q ss_pred EEEECCCCCCHHHHHHHHC
Q ss_conf 9996579995578996451
Q 000524 888 TALMGVSGAGKTTLMDVLS 906 (1444)
Q Consensus 888 ~al~G~sGaGKTTLl~~La 906 (1444)
+.|.||+|+||||+.+.++
T Consensus 36 lll~Gp~G~GKTt~~~~la 54 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALL 54 (252)
T ss_dssp EEEECSTTSSHHHHHHTHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9988999998899999999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.19 E-value=0.021 Score=28.92 Aligned_cols=24 Identities=38% Similarity=0.346 Sum_probs=13.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499997699996899999984699
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l 202 (1444)
.+.+++||+|+||||.+--||-++
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 689998999998899999999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.18 E-value=0.012 Score=30.44 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++++|.+|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.18 E-value=0.067 Score=25.77 Aligned_cols=24 Identities=38% Similarity=0.371 Sum_probs=20.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 919999657999557899645189
Q 000524 885 GVLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 885 G~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
..+++++||+|+||||.+-=||.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.18 E-value=0.014 Score=30.16 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.14 E-value=0.015 Score=29.89 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999996989999999709
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.11 E-value=0.018 Score=29.43 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996579995578996451897
Q 000524 886 VLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 886 ~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
-+++|-|+.||||||+++.|+...
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.09 E-value=0.013 Score=30.36 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8919999657999557899645189
Q 000524 884 PGVLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 884 pG~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
|+.-+.+.||+|+|||.|.++||..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9866999899998888999998621
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.08 E-value=0.018 Score=29.40 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999619
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.07 E-value=0.019 Score=29.22 Aligned_cols=52 Identities=25% Similarity=0.395 Sum_probs=32.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 99997699996899999984699999980119999784189987552189974788878999999999986
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFS 250 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~r~~aYv~Q~D~~~~~lTVrEtL~Fa 250 (1444)
+.+|-|++|||||||-..|.-.+... .| .+..++.++.+|.+. |-.|-...+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~---~~-------------~~~~v~~iS~DdfY~---t~~~r~~L~ 80 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK---YG-------------GEKSIGYASIDDFYL---THEDQLKLN 80 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH---HG-------------GGSCEEEEEGGGGBC---CHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---HC-------------CCCCEEEECCCCCCC---CHHHHHHHH
T ss_conf 99837998788999999999999987---27-------------786067635677778---889999985
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.02 E-value=0.016 Score=29.81 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.+.|+|++||||||+.+.|+.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999989999999998
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.02 E-value=0.079 Score=25.30 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=26.6
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 84501787728919999657999557899645189
Q 000524 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 874 iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.+|+....+ .|.-+.+.|+||+|||||...|..+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 178999999-9999999818999989999999985
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.93 E-value=0.015 Score=29.94 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996579995578996451897
Q 000524 888 TALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
+.|+|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.93 E-value=0.021 Score=28.91 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|++|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.93 E-value=0.03 Score=27.98 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=28.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCCCEEEEEC
Q ss_conf 99997699996899999984699999980119999784189987552189974
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYIS 232 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~r~~aYv~ 232 (1444)
-+.|+|-|.+|||||+++|++--. -...++.....|..-+..|+
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~---------~~~~ypf~ti~pn~gvv~v~ 47 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGI---------EAANYPFCTIEPNTGVVPMP 47 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC---------------CCCCCCCCSSEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC---------CCCCCCCCCCCCCEEEEECC
T ss_conf 488889999988999999977997---------41369988877845899643
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.91 E-value=0.023 Score=28.72 Aligned_cols=28 Identities=36% Similarity=0.432 Sum_probs=22.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8849999769999689999998469999
Q 000524 177 PGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1444)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~~LaG~l~~ 204 (1444)
.|.+.++=|+-||||||+.+.|+-++..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.026 Score=28.43 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999968999999846999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
.+++|.+|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.89 E-value=0.019 Score=29.23 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=18.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 8772891999965799955789964518
Q 000524 880 GAFRPGVLTALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 880 ~~i~pG~~~al~G~sGaGKTTLl~~Lag 907 (1444)
|-++.|.++-+-|++|+|||||.-.++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9866754789805876522799999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.88 E-value=0.025 Score=28.44 Aligned_cols=24 Identities=29% Similarity=0.312 Sum_probs=14.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499997699996899999984699
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l 202 (1444)
...+++||+|+||||.+-=||-++
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899998999998899999999999
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.87 E-value=0.017 Score=29.55 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=14.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999829
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.86 E-value=0.018 Score=29.34 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99976999968999999846
Q 000524 181 TLLLGPPASGKTTLLLALAG 200 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG 200 (1444)
.+++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999982
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.79 E-value=0.02 Score=29.06 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999769999689999998469
Q 000524 180 MTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
..+|+|.-+||||||+++|.|.
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~ 49 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999768989799999999689
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.75 E-value=0.022 Score=28.86 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=10.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999769999689999998469
Q 000524 180 MTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
+.+++||+|+||||.+-=||-+
T Consensus 14 vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 14 VIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp EEEEECSCCC----HHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.72 E-value=0.02 Score=29.12 Aligned_cols=26 Identities=42% Similarity=0.492 Sum_probs=22.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 28919999657999557899645189
Q 000524 883 RPGVLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 883 ~pG~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
+.|.+++|-|+.||||||+.+.|+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98059999899888999999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.70 E-value=0.024 Score=28.63 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 1999965799955789964518978
Q 000524 886 VLTALMGVSGAGKTTLMDVLSGRKT 910 (1444)
Q Consensus 886 ~~~al~G~sGaGKTTLl~~Lag~~~ 910 (1444)
-.++++|.+|+|||||++.|.+...
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~~ 40 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNEV 40 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7999999999898999999966888
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.69 E-value=0.019 Score=29.29 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965799955789964518
Q 000524 887 LTALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag 907 (1444)
++||.|++||||||+.+.|..
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.68 E-value=0.02 Score=29.17 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.+.|+|++||||||+.+.|+.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999879999999998
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.68 E-value=0.058 Score=26.12 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++++|.+|+|||||++.+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.67 E-value=0.022 Score=28.79 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 91999965799955789964518978
Q 000524 885 GVLTALMGVSGAGKTTLMDVLSGRKT 910 (1444)
Q Consensus 885 G~~~al~G~sGaGKTTLl~~Lag~~~ 910 (1444)
+.+.+|-|+.||||||+++.|+....
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.66 E-value=0.019 Score=29.27 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997998999999999809
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.66 E-value=0.015 Score=29.88 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.7
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 7877289199996579995578996451
Q 000524 879 SGAFRPGVLTALMGVSGAGKTTLMDVLS 906 (1444)
Q Consensus 879 s~~i~pG~~~al~G~sGaGKTTLl~~La 906 (1444)
.|-+++|.++.|.|++|+|||++.--++
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6997689799998899887889999999
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.64 E-value=0.02 Score=29.12 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.60 E-value=0.01 Score=31.00 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.55 E-value=0.017 Score=29.52 Aligned_cols=26 Identities=35% Similarity=0.631 Sum_probs=21.6
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 728919999657999557899645189
Q 000524 882 FRPGVLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 882 i~pG~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
+|+. .+||+|...||||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8998-7999969985499999999823
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.50 E-value=0.021 Score=28.98 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.47 E-value=0.025 Score=28.52 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=17.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499997699996899999984699
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l 202 (1444)
.++.|+||.++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999988999997999999980998
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.46 E-value=0.02 Score=29.11 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
++++|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.45 E-value=0.022 Score=28.80 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.41 E-value=0.023 Score=28.67 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=13.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99976999968999999846
Q 000524 181 TLLLGPPASGKTTLLLALAG 200 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG 200 (1444)
.+|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999971
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.38 E-value=0.078 Score=25.34 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=26.1
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 845017877289199996579995578996451897
Q 000524 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 874 iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.+|+ +...-.|.-+.+.|+||+|||||.-.|..+-
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 2899-9999999999998089999899999999859
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.37 E-value=0.023 Score=28.72 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
+..|.|++||||||+.+.|+.+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998989989899999999999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.37 E-value=0.036 Score=27.47 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=17.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999976999968999999846999
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
.+.+++||+|+||||.+-=||-++.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999989999998999999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.36 E-value=0.022 Score=28.85 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.+.++||+||||||..+.|+-+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.024 Score=28.63 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990889999999719
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.025 Score=28.44 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|.+|+|||||++.+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998993999999999719
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.34 E-value=0.017 Score=29.56 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|++|+|||||++.+.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999887338
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.32 E-value=0.038 Score=27.33 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999968999999846999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
.+++|.+|+|||||++.+.+...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999899299999999972867
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.29 E-value=0.03 Score=28.02 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.29 E-value=0.024 Score=28.64 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.27 E-value=0.025 Score=28.50 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.+.|+||+||||||+-+.|+..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999979999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.023 Score=28.67 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
++|+|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999739
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.23 E-value=0.025 Score=28.44 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.+.|+|++||||||+-+.|+.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 6999889999879999999999
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.027 Score=28.32 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.18 E-value=0.026 Score=28.33 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=21.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89199996579995578996451897
Q 000524 884 PGVLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 884 pG~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.+..+.|.|++|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.17 E-value=0.03 Score=27.99 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=36.9
Q ss_pred CCCEEEEECCCC--CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHH
Q ss_conf 997789949999--999999999999999998489889999548877899730658799259499998489865047999
Q 000524 1016 NPSIIFMDEPTS--GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLIS 1093 (1444)
Q Consensus 1016 ~p~il~lDEPTs--gLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~ll~~gG~~vy~G~~g~~~~~~~~ 1093 (1444)
.+.++++||.-. .-+......+++... ...+.++++...+.......+ .+..+.+.+.|+.. ..+..
T Consensus 123 ~~~vi~ide~~~~~~~~~~~~~~~~~~~~---~~~~~ii~i~~~~~~~~~~~l------~~~~~~i~f~~~~~--~~i~~ 191 (253)
T d1sxja2 123 KHFVIIMDEVDGMSGGDRGGVGQLAQFCR---KTSTPLILICNERNLPKMRPF------DRVCLDIQFRRPDA--NSIKS 191 (253)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHH---HCSSCEEEEESCTTSSTTGGG------TTTSEEEECCCCCH--HHHHH
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCC------CCEEEEEECCCCCH--HHHHH
T ss_conf 51377763011111000134677765401---234222111355552113532------44036531145314--67889
Q ss_pred HHHHC
Q ss_conf 99819
Q 000524 1094 YFEAI 1098 (1444)
Q Consensus 1094 yF~~~ 1098 (1444)
+.+.+
T Consensus 192 ~l~~i 196 (253)
T d1sxja2 192 RLMTI 196 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.13 E-value=0.034 Score=27.65 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99997699996899999984
Q 000524 180 MTLLLGPPASGKTTLLLALA 199 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~La 199 (1444)
+.+|.|++||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.10 E-value=0.026 Score=28.41 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=13.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99976999968999999846
Q 000524 181 TLLLGPPASGKTTLLLALAG 200 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG 200 (1444)
.+|+|++|+|||||++.+.+
T Consensus 7 v~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 7 IAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899298999999971
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.09 E-value=0.032 Score=27.82 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++++|++|+|||||++.+.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.06 E-value=0.0061 Score=32.44 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++++|.+++|||||++.|.|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.06 E-value=0.035 Score=27.59 Aligned_cols=29 Identities=41% Similarity=0.612 Sum_probs=22.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 48849999769999689999998469999
Q 000524 176 KPGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1444)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~~LaG~l~~ 204 (1444)
.|+=+.++-||.||||||+|.++...++.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf 41054898767877744779998666257
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.025 Score=28.47 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99976999968999999846
Q 000524 181 TLLLGPPASGKTTLLLALAG 200 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG 200 (1444)
.+++|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999099999999970
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.05 E-value=0.054 Score=26.32 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999968999999846999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
=.+++|+..+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 899997248869999999970412
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.04 E-value=0.021 Score=29.03 Aligned_cols=22 Identities=45% Similarity=0.531 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699996899999984699
Q 000524 181 TLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l 202 (1444)
++++|+||+|||||++.+.+..
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999987899999984488
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.99 E-value=0.037 Score=27.38 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999976999968999999846
Q 000524 180 MTLLLGPPASGKTTLLLALAG 200 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG 200 (1444)
+.+|.|++||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=92.97 E-value=0.022 Score=28.82 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHH
Q ss_conf 99976999968999999
Q 000524 181 TLLLGPPASGKTTLLLA 197 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~ 197 (1444)
++|.|+|||||||.|-.
T Consensus 17 ~lI~g~aGTGKTt~l~~ 33 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITN 33 (306)
T ss_dssp EEECCCTTSCHHHHHHH
T ss_pred EEEEEECCCCHHHHHHH
T ss_conf 89996288438999999
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.89 E-value=0.018 Score=29.33 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|.+|+|||||++.|.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994999999999709
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.88 E-value=0.034 Score=27.64 Aligned_cols=49 Identities=6% Similarity=0.070 Sum_probs=30.1
Q ss_pred HCCCCCCEEECCCCCC-CHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHH
Q ss_conf 2498535133599899-9898999999999987704997999983590048
Q 000524 339 VGPALALFMDEISTGL-DSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388 (1444)
Q Consensus 339 v~~~~vLlLDEpTsGL-Ds~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~ 388 (1444)
+....++++|++-.=. +..+...+...+.... ..++.+|++-..|..+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~-~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEEEEESSCGGGC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH-HCCCEEEEECCCCCHHC
T ss_conf 762130101126550586577889999999876-31663899548751001
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.79 E-value=0.028 Score=28.16 Aligned_cols=24 Identities=42% Similarity=0.469 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499997699996899999984699
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l 202 (1444)
-++.|-|.-||||||||+-|....
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred CEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 889986488899999999998567
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.78 E-value=0.041 Score=27.13 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999968999999846999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
+.+|-|..||||||+++.|+.++.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.76 E-value=0.048 Score=26.68 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=17.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488499997699996899999984699
Q 000524 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~~LaG~l 202 (1444)
+||.+.++-|+=|||||||.+.++..+
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 998299996687765889999987642
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.69 E-value=0.03 Score=27.94 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++++|++|+|||||++.+.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999997197
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.65 E-value=0.038 Score=27.31 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=20.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8919999657999557899645189
Q 000524 884 PGVLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 884 pG~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.+..++++||+|+||||.+-=||.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9779999899999889999999999
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.65 E-value=0.035 Score=27.59 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.+.|+|++||||||+.+.|+.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.63 E-value=0.036 Score=27.50 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
++++|.+|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992989999999739
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.61 E-value=0.037 Score=27.42 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999769999689999998469
Q 000524 180 MTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
-++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=92.58 E-value=0.042 Score=27.01 Aligned_cols=19 Identities=37% Similarity=0.683 Sum_probs=11.6
Q ss_pred CEEEEEECCCCCCHHHHHH
Q ss_conf 8499997699996899999
Q 000524 178 GRMTLLLGPPASGKTTLLL 196 (1444)
Q Consensus 178 G~lt~IlGpsGSGKSTLL~ 196 (1444)
+.++.|-||||+||||++.
T Consensus 163 ~~~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVA 181 (359)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCEEEEECCCCCCCEEHHH
T ss_conf 8859997689887521699
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.58 E-value=0.047 Score=26.72 Aligned_cols=34 Identities=35% Similarity=0.683 Sum_probs=26.5
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 8450178772891999965799955789964518978
Q 000524 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT 910 (1444)
Q Consensus 874 iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~ 910 (1444)
+|+.++. |=..++++|+.++||||||+.|.|...
T Consensus 24 ~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 24 ILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp HHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred HHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 9970799---879999889999979999999809987
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=92.57 E-value=0.026 Score=28.34 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=18.4
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHH
Q ss_conf 13752105688488499997699996899999
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLL 196 (1444)
Q Consensus 165 ~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~ 196 (1444)
..|+++.. |. ++|.|+|||||||.|-
T Consensus 17 ~~~v~~~~-----g~-~lV~g~aGSGKTt~l~ 42 (318)
T d1pjra1 17 QEAVRTTE-----GP-LLIMAGAGSGKTRVLT 42 (318)
T ss_dssp HHHHHCCS-----SC-EEEEECTTSCHHHHHH
T ss_pred HHHHHCCC-----CC-EEEEECCCCCHHHHHH
T ss_conf 99982999-----99-8999529866899999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.54 E-value=0.03 Score=28.00 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.52 E-value=0.039 Score=27.27 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965799955789964518
Q 000524 887 LTALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag 907 (1444)
++||-|++|||||||-+.|.-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 998379987889999999999
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.50 E-value=0.033 Score=27.69 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999657999557899645189
Q 000524 888 TALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lag~ 908 (1444)
+.|.||+|+||||+.++++..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999789997487999999999
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.49 E-value=0.04 Score=27.21 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965799955789964518
Q 000524 887 LTALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag 907 (1444)
++||.|..||||||+.+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.48 E-value=0.046 Score=26.78 Aligned_cols=20 Identities=50% Similarity=0.541 Sum_probs=16.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99997699996899999984
Q 000524 180 MTLLLGPPASGKTTLLLALA 199 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~La 199 (1444)
-.+|+|+.|||||||..+|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999488980999999999
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.45 E-value=0.034 Score=27.60 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996579995578996451897
Q 000524 888 TALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
+.+.||+|+||||+.++|+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 8987999973889999998503
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.43 E-value=0.059 Score=26.11 Aligned_cols=34 Identities=32% Similarity=0.219 Sum_probs=26.7
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 84501787728919999657999557899645189
Q 000524 874 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 874 iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
-+|+ +...-.|.-+.+.|+||+|||||.-.|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.036 Score=27.44 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.036 Score=27.50 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
++|+|.+|+|||||++.+.+.
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998993889999999719
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.32 E-value=0.044 Score=26.93 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
++|+|.+|+|||||++.+.+.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999993989999999829
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.31 E-value=0.042 Score=27.02 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999769999689999998469
Q 000524 179 RMTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
+-++|+|++|||||++++.+.-.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~ 73 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYT 73 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHH
T ss_conf 65899907999689999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.27 E-value=0.037 Score=27.43 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++++|.+|+|||||++-+.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.25 E-value=0.042 Score=27.06 Aligned_cols=30 Identities=40% Similarity=0.599 Sum_probs=26.9
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 688488499997699996899999984699
Q 000524 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 173 g~i~pG~lt~IlGpsGSGKSTLL~~LaG~l 202 (1444)
|-+++|++|.+.||||||||||+.-++...
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 996673589980577747899999999998
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.23 E-value=0.037 Score=27.43 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.+||+|.+.+|||||+++|+|-.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.08 Score=25.25 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=13.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|.+|+|||||++.+.+.
T Consensus 8 i~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999719
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.19 E-value=0.054 Score=26.35 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHH---HCCCC
Q ss_conf 9999769999689999998---46999
Q 000524 180 MTLLLGPPASGKTTLLLAL---AGKLD 203 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~L---aG~l~ 203 (1444)
-.+|+|+.|||||||..+| +|..+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 999995898998999999999648534
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.19 E-value=0.028 Score=28.19 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=10.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99976999968999999846
Q 000524 181 TLLLGPPASGKTTLLLALAG 200 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG 200 (1444)
.+++|++|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999088999999984
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.18 E-value=0.054 Score=26.33 Aligned_cols=21 Identities=38% Similarity=0.286 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|+++||||||++.|.+.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999947898499999999998
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.18 E-value=0.045 Score=26.83 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=23.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 891999965799955789964518978
Q 000524 884 PGVLTALMGVSGAGKTTLMDVLSGRKT 910 (1444)
Q Consensus 884 pG~~~al~G~sGaGKTTLl~~Lag~~~ 910 (1444)
.|.++++=|+-||||||+.+.|+.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.18 E-value=0.041 Score=27.09 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+|+|.+|+|||||++-+.+.
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997996989999999739
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.17 E-value=0.044 Score=26.91 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
++++|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.05 E-value=0.047 Score=26.72 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8919999657999557899645189
Q 000524 884 PGVLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 884 pG~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.|..+++-|+.||||||+.+.|+.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9878999899888799999999999
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.04 E-value=0.048 Score=26.70 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|.+|+|||||++-+.+.
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.04 E-value=0.046 Score=26.82 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99976999968999999846
Q 000524 181 TLLLGPPASGKTTLLLALAG 200 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG 200 (1444)
.+++|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999299999999971
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.91 E-value=0.049 Score=26.61 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+|+|.+|+|||||++-+...
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.86 E-value=0.051 Score=26.49 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=16.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999976999968999999846
Q 000524 180 MTLLLGPPASGKTTLLLALAG 200 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG 200 (1444)
-.+|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.86 E-value=0.053 Score=26.37 Aligned_cols=20 Identities=40% Similarity=0.581 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99997699996899999984
Q 000524 180 MTLLLGPPASGKTTLLLALA 199 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~La 199 (1444)
-++++|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79999899998899999895
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.81 E-value=0.058 Score=26.14 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=21.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 28919999657999557899645189
Q 000524 883 RPGVLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 883 ~pG~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
+|...+.++||+|.|||.|.+.||..
T Consensus 50 ~p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 50 KPVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87658999778750069999999863
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.79 E-value=0.038 Score=27.32 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.78 E-value=0.051 Score=26.49 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++-+.+.
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999829
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=91.69 E-value=0.055 Score=26.31 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++-+.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999889999887338
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.68 E-value=0.06 Score=26.07 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.66 E-value=0.064 Score=25.87 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=23.9
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 72891999965799955789964518
Q 000524 882 FRPGVLTALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 882 i~pG~~~al~G~sGaGKTTLl~~Lag 907 (1444)
.+||.+++|-|+=||||||+.+.++.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79982999966877658899999876
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.054 Score=26.36 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|.+|+|||||++-+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999859
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.61 E-value=0.048 Score=26.65 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++++|.+|+|||||++.+.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~~ 26 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNKK 26 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999919899999997198
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.57 E-value=0.04 Score=27.17 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=28.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECC
Q ss_conf 999965799955789964518978963799999959027811223258997048
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQN 940 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~ 940 (1444)
-+.++||+|+|||-|.+.||+.... + -+..+.-. |. ..|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-P---Fv~~daT~-----fT-eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-P---FIKVEATK-----FT-EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-C---EEEEEGGG-----GC-----CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-C---EEEEECCE-----EE-ECCEEECC
T ss_conf 4799899998899999999987389-8---89862551-----14-11111044
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.56 E-value=0.057 Score=26.22 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|.+|+|||||++.+.+.
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999709
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.56 E-value=0.048 Score=26.68 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=20.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8919999657999557899645189
Q 000524 884 PGVLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 884 pG~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
+-..++++||+|+||||.+-=||.+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999889999999999
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.55 E-value=0.05 Score=26.55 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.50 E-value=0.047 Score=26.73 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999657999557899645189
Q 000524 886 VLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 886 ~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
-.++|+|.+|+|||||++.+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 38999998992989999999719
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.49 E-value=0.068 Score=25.70 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=16.3
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 72891999965799955789964518
Q 000524 882 FRPGVLTALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 882 i~pG~~~al~G~sGaGKTTLl~~Lag 907 (1444)
+-.|+..+|.|++|+|||||+..++.
T Consensus 40 igrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 40 IGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 45787556867999887899999999
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.48 E-value=0.062 Score=25.96 Aligned_cols=18 Identities=50% Similarity=0.726 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999769999689999998
Q 000524 181 TLLLGPPASGKTTLLLAL 198 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~L 198 (1444)
.+++|.+|+|||||++-+
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999989999988
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=91.48 E-value=0.064 Score=25.86 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=16.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999769999689999998469
Q 000524 180 MTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
=.+++|++.+|||||+++|.+.
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8999958898099999999999
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=91.47 E-value=0.042 Score=27.07 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996579995578996451897
Q 000524 888 TALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
+.+-||+|.||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988979987888999999984
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.46 E-value=0.061 Score=26.02 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=91.46 E-value=0.076 Score=25.39 Aligned_cols=28 Identities=43% Similarity=0.536 Sum_probs=22.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4884999976999968999999846999
Q 000524 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
+|.-..+++||+|+|||.+.+.||-.+.
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 8766999978886248999999999835
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.44 E-value=0.055 Score=26.27 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
-+|++|.-.+|||||++.|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.44 E-value=0.061 Score=26.00 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965799955789964518
Q 000524 887 LTALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag 907 (1444)
++||.|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.41 E-value=0.061 Score=26.00 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++++|.-.||||||+++|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.35 E-value=0.059 Score=26.10 Aligned_cols=29 Identities=38% Similarity=0.628 Sum_probs=24.8
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88488499997699996899999984699
Q 000524 174 IIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 174 ~i~pG~lt~IlGpsGSGKSTLL~~LaG~l 202 (1444)
.+-.|+-.+|.|++|+|||||+..++...
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 64578755686799988789999999977
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.35 E-value=0.059 Score=26.10 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=19.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 919999657999557899645189
Q 000524 885 GVLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 885 G~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
-..++++||+|+||||.+-=||.+
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 989999899999989999999999
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.35 E-value=0.069 Score=25.65 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999968999999846999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
=.+|+||||.|||++...|+.++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.34 E-value=0.093 Score=24.84 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=24.3
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 7289199996579995578996451897
Q 000524 882 FRPGVLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 882 i~pG~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.+|.--+|++|.-.+|||||++.|.|..
T Consensus 5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 5 VQPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9997089999724886999999997041
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.28 E-value=0.064 Score=25.86 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++++|...||||||+++|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.23 E-value=0.055 Score=26.28 Aligned_cols=20 Identities=50% Similarity=0.717 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99996579995578996451
Q 000524 887 LTALMGVSGAGKTTLMDVLS 906 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~La 906 (1444)
-+||+|..|+|||||.+.|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999488980999999999
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.17 E-value=0.048 Score=26.65 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.16 E-value=0.072 Score=25.54 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=21.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9199996579995578996451897
Q 000524 885 GVLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 885 G~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
...+.|.||+|.||||+++.|+...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8816888989998999999999997
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.15 E-value=0.077 Score=25.37 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.+.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.14 E-value=0.067 Score=25.76 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999769999689999998469999
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l~~ 204 (1444)
+..+|=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.11 E-value=0.053 Score=26.40 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++++|.+|+|||||++.+.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~ 27 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGE 27 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999908899999998498
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=0.063 Score=25.93 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
++++|.+|+|||||++.+.+.
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996999999999719
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=0.07 Score=25.64 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.03 E-value=0.06 Score=26.06 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++++|.+|+|||||++-+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.92 E-value=0.065 Score=25.82 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.85 E-value=0.059 Score=26.11 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.82 E-value=0.067 Score=25.73 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.80 E-value=0.074 Score=25.45 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=21.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 2891999965799955789964518
Q 000524 883 RPGVLTALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 883 ~pG~~~al~G~sGaGKTTLl~~Lag 907 (1444)
+|---+|++|..++|||||++.|..
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 9971999994789849999999999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.79 E-value=0.073 Score=25.50 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999657999557899645189
Q 000524 886 VLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 886 ~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.+++++||+|+||||.+-=||.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999989999999999
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.78 E-value=0.079 Score=25.30 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=42.5
Q ss_pred HHHHCCCEEEEECCCCCCCHHHH------HHHHHHHHHHH----H-CCCEEEEEECCCCHHHHHHCCEEEEEEC--CCEE
Q ss_conf 99519977899499999999999------99999999998----4-8988999954887789973065879925--9499
Q 000524 1012 ELVANPSIIFMDEPTSGLDARAA------AIVMRTVRNTV----D-TGRTVVCTIHQPGIDIFDAFDELFLMKR--GGQE 1078 (1444)
Q Consensus 1012 ~L~~~p~il~lDEPTsgLD~~sa------~~i~~~l~~~~----~-~g~tvi~t~Hqps~~i~~~fD~i~ll~~--gG~~ 1078 (1444)
+-...|.|||+||-=+=+..++. ..+...+.... . .+.-||+|+.+|.. .|.-+ +.. =.+.
T Consensus 93 A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~-----ld~al-~r~gRfd~~ 166 (258)
T d1e32a2 93 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS-----IDPAL-RRFGRFDRE 166 (258)
T ss_dssp HHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGG-----SCGGG-TSTTSSCEE
T ss_pred HHHCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCC-----CCHHH-HHCCCCCCE
T ss_conf 986499499852111322578877770689998775001101234688117975799310-----25245-424630232
Q ss_pred EEECCCCCCHHHHHHHHHHC
Q ss_conf 99848986504799999819
Q 000524 1079 IYVGPLGRHSCQLISYFEAI 1098 (1444)
Q Consensus 1079 vy~G~~g~~~~~~~~yF~~~ 1098 (1444)
++++++... .-...++..
T Consensus 167 i~~~~P~~~--~R~~il~~~ 184 (258)
T d1e32a2 167 VDIGIPDAT--GRLEILQIH 184 (258)
T ss_dssp EECCCCCHH--HHHHHHHHT
T ss_pred EECCCCCHH--HHHHHHHHH
T ss_conf 378999988--999873220
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.76 E-value=0.067 Score=25.75 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999657999557899645189
Q 000524 888 TALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lag~ 908 (1444)
+.+-||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.72 E-value=0.076 Score=25.41 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++-+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.72 E-value=0.19 Score=22.83 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999657999557899645189
Q 000524 886 VLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 886 ~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
-.++++|.+|+|||||++-+.+.
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.69 E-value=0.066 Score=25.79 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99996579995578996451
Q 000524 887 LTALMGVSGAGKTTLMDVLS 906 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~La 906 (1444)
-+||+|..|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.66 E-value=0.069 Score=25.68 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.64 E-value=0.058 Score=26.17 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++-+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.60 E-value=0.079 Score=25.30 Aligned_cols=23 Identities=57% Similarity=0.778 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
+++|-|.-||||||+++.|+.+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.59 E-value=0.051 Score=26.49 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++.|.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.58 E-value=0.11 Score=24.48 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999968999999846999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
-.++-||+|+||||+...++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 798889998759999999998210
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.49 E-value=0.066 Score=25.78 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.43 E-value=0.074 Score=25.46 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++-+.+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.40 E-value=0.11 Score=24.37 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=18.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999976999968999999846999
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
...++-||||+||||+..+++..+.
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 0598888998758999999999846
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.36 E-value=0.09 Score=24.93 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|.+|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999998998999999999709
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.32 E-value=0.077 Score=25.34 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++++|.+|+|||||++-+.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.26 E-value=0.12 Score=24.04 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=15.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 849999769999689999998469
Q 000524 178 GRMTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 178 G~lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
..+++|.|..|.|||||.+.+...
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 408999779978889999999985
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=90.25 E-value=0.084 Score=25.11 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.+.++|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999987899999984488
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.09 E-value=0.13 Score=23.94 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=10.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999976999968999999846
Q 000524 180 MTLLLGPPASGKTTLLLALAG 200 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG 200 (1444)
+.+|.|+.||||||..+.|+.
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999979999889999999998
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=90.07 E-value=0.14 Score=23.78 Aligned_cols=27 Identities=37% Similarity=0.430 Sum_probs=22.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 884999976999968999999846999
Q 000524 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
.+--.+|+|-|-+|||||+|.|.|+-.
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 752789986675443555425426615
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.99 E-value=0.078 Score=25.32 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++++|.+|+|||||++-+.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~ 24 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDS 24 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989909899999998499
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.98 E-value=0.097 Score=24.73 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
++++|.+|+|||||++.+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999995989999999729
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.97 E-value=0.1 Score=24.63 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++-+...
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.83 E-value=0.11 Score=24.49 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99996579995578996451
Q 000524 887 LTALMGVSGAGKTTLMDVLS 906 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~La 906 (1444)
.+.++|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79999899998899999895
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.82 E-value=0.09 Score=24.94 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=39.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99778994999999999999999999999848988999954887789973065879925949999848986504799999
Q 000524 1016 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYF 1095 (1444)
Q Consensus 1016 ~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~ll~~gG~~vy~G~~g~~~~~~~~yF 1095 (1444)
+.+++++||.-. +...+...+...+... ......+++.++.+. +... +.++ -+.+.+.|+.. .++..|.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~-~~~~~~i~~~~~~~~-i~~~-----l~sr-~~~i~~~~~~~--~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELY-SNSTRFAFACNQSNK-IIEP-----LQSQ-CAILRYSKLSD--EDVLKRL 169 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHT-TTTEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCC-CCCEEEEECCCCHHH-HHHH-----HHHH-HHHHHHCCCCH--HHHHHHH
T ss_conf 359999824432-3215778775201123-333366531474302-1067-----8877-77765313322--4567888
Q ss_pred HHC
Q ss_conf 819
Q 000524 1096 EAI 1098 (1444)
Q Consensus 1096 ~~~ 1098 (1444)
..+
T Consensus 170 ~~i 172 (224)
T d1sxjb2 170 LQI 172 (224)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 777
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=89.80 E-value=0.12 Score=24.24 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.+++|+..+|||||++.|...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999937898989999999998
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.76 E-value=0.092 Score=24.87 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++-+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.75 E-value=0.099 Score=24.65 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++-+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990999999999709
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.69 E-value=0.096 Score=24.76 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.+.++|.+|+|||||++.+.+..
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=89.46 E-value=0.061 Score=26.01 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999657999557899645189
Q 000524 886 VLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 886 ~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
-.+||+|-+.+|||||+++|++-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 37999789999899999999778
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.41 E-value=0.092 Score=24.86 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.30 E-value=0.12 Score=24.08 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHC
Q ss_conf 199996579995578996451
Q 000524 886 VLTALMGVSGAGKTTLMDVLS 906 (1444)
Q Consensus 886 ~~~al~G~sGaGKTTLl~~La 906 (1444)
-.+.++|.+|+|||||++-+.
T Consensus 3 iKivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 3 VKILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899999899999899999884
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.21 E-value=0.11 Score=24.48 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=89.00 E-value=0.13 Score=24.01 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.+.++|.+|+|||||++-+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=88.88 E-value=0.077 Score=25.35 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
++.+.||+|.||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8996789998999999999999
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.81 E-value=0.12 Score=24.13 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++|+|.+|+|||||++-+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.81 E-value=0.11 Score=24.26 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699996899999984699
Q 000524 181 TLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l 202 (1444)
.++.||||+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.79 E-value=0.14 Score=23.71 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965799955789964518
Q 000524 887 LTALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag 907 (1444)
.++++|.+|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=88.62 E-value=0.16 Score=23.32 Aligned_cols=25 Identities=24% Similarity=0.122 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999769999689999998469999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLDS 204 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~~ 204 (1444)
...|=|+-|+||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9999888667899999999998656
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=88.59 E-value=0.15 Score=23.54 Aligned_cols=24 Identities=50% Similarity=0.711 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999968999999846999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
-.+.+||+|+|||-|.++||..++
T Consensus 70 niLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 70 NILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 324418998637899999986443
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.57 E-value=0.15 Score=23.58 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.+.++|.+|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.52 E-value=0.12 Score=24.04 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=39.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEE-EEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHHH
Q ss_conf 997789949999999999999999999998489889-9995488778997306587992594999984898650479999
Q 000524 1016 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV-VCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISY 1094 (1444)
Q Consensus 1016 ~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tv-i~t~Hqps~~i~~~fD~i~ll~~gG~~vy~G~~g~~~~~~~~y 1094 (1444)
+.+++++||.- .+.......+.+.+.... ..++ +++.+++. .+... +.++ ...+.+-|+.. .++..+
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~--~~~~~~~~~~~~~-~i~~~-----i~sr-~~~i~~~~~~~--~~i~~~ 166 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYT--KNTRFCVLANYAH-KLTPA-----LLSQ-CTRFRFQPLPQ--EAIERR 166 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCCH--HHHHHH
T ss_pred CEEEEEEECCC-CCHHHHHHHHHHHHHHCC--CCEEECCCCCCHH-HHHHH-----HHHH-HHHHCCCCCCC--CCCCCC
T ss_conf 71899996632-000237899998863112--0023201267087-75999-----9988-75401235652--000110
Q ss_pred HHHC
Q ss_conf 9819
Q 000524 1095 FEAI 1098 (1444)
Q Consensus 1095 F~~~ 1098 (1444)
...+
T Consensus 167 l~~I 170 (227)
T d1sxjc2 167 IANV 170 (227)
T ss_dssp HHHH
T ss_pred CCCC
T ss_conf 2122
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.45 E-value=0.15 Score=23.46 Aligned_cols=30 Identities=37% Similarity=0.553 Sum_probs=25.6
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 568848849999769999689999998469
Q 000524 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 172 sg~i~pG~lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
.|-++.|++|.+.||||||||||+..++..
T Consensus 54 ~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 54 IGGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SSSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 698666336999648874889999999998
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.40 E-value=0.12 Score=24.21 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.+.++|.+|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.36 E-value=0.17 Score=23.19 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999968999999846999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
.+++||||.|||++...||.++.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39983587544799999999998
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.34 E-value=0.16 Score=23.41 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.+.++|.+|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=87.78 E-value=0.15 Score=23.41 Aligned_cols=21 Identities=38% Similarity=0.760 Sum_probs=18.3
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 997699996899999984699
Q 000524 182 LLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 182 ~IlGpsGSGKSTLL~~LaG~l 202 (1444)
+|+|+||.|||++...||.++
T Consensus 47 llvG~~GvGKtaiv~~la~~i 67 (387)
T d1qvra2 47 VLIGEPGVGKTAIVEGLAQRI 67 (387)
T ss_dssp EEEECTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 687999988999999999999
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.75 E-value=0.13 Score=23.80 Aligned_cols=27 Identities=26% Similarity=0.120 Sum_probs=22.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 289199996579995578996451897
Q 000524 883 RPGVLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 883 ~pG~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
+.+.++.+.||+|+|||++...|++..
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 976769998999988899999999985
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.75 E-value=0.15 Score=23.58 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999657999557899645189
Q 000524 886 VLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 886 ~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
-.++|+|-+.+|||||+++|++-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.65 E-value=0.17 Score=23.20 Aligned_cols=21 Identities=38% Similarity=0.475 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999689999998469
Q 000524 181 TLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~ 201 (1444)
+++||.+|+|||||++-+...
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999999679
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.61 E-value=0.17 Score=23.17 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
.++++|.+|+|||||++-+.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.40 E-value=0.17 Score=23.19 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
++.|-|.-|||||||++-|....
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89986488899999999998567
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=87.32 E-value=0.14 Score=23.62 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=21.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 2891999965799955789964518
Q 000524 883 RPGVLTALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 883 ~pG~~~al~G~sGaGKTTLl~~Lag 907 (1444)
+|.--+|++|.-++|||||++.|.+
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9971899995889809999999999
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.23 E-value=0.23 Score=22.32 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=19.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 877289199996579995578996451
Q 000524 880 GAFRPGVLTALMGVSGAGKTTLMDVLS 906 (1444)
Q Consensus 880 ~~i~pG~~~al~G~sGaGKTTLl~~La 906 (1444)
..+-.|+..+|.|++|.|||||+..++
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 563678877766799989899999999
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.22 E-value=0.14 Score=23.64 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9997699996899999984
Q 000524 181 TLLLGPPASGKTTLLLALA 199 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~La 199 (1444)
.+|+|+.++|||||+.+|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999688886999999999
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.18 E-value=0.2 Score=22.69 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.++++|.+|+|||||++-+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.06 E-value=0.19 Score=22.84 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
.+.++|.+|+|||||++-+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=86.54 E-value=0.28 Score=21.77 Aligned_cols=28 Identities=21% Similarity=0.504 Sum_probs=23.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 2891999965799955789964518978
Q 000524 883 RPGVLTALMGVSGAGKTTLMDVLSGRKT 910 (1444)
Q Consensus 883 ~pG~~~al~G~sGaGKTTLl~~Lag~~~ 910 (1444)
..+-.++++|.+.+|||||++.|.|++.
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 7752789986675443555425426615
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.42 E-value=0.34 Score=21.23 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=24.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 68848849999769999689999998469
Q 000524 173 GIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1444)
Q Consensus 173 g~i~pG~lt~IlGpsGSGKSTLL~~LaG~ 201 (1444)
..+-.|+-.+|.|++|+|||||+.-++..
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 56367887776679998989999999998
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=86.34 E-value=0.2 Score=22.77 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999968999999846999
Q 000524 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 180 lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
...|=|+-||||||+++.|+..+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989867789999999999817
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.30 E-value=0.23 Score=22.29 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=21.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 28919999657999557899645189
Q 000524 883 RPGVLTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 883 ~pG~~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
+|.-...++||+|+|||.|.+.||..
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~ 76 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAAT 76 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87669999788862489999999998
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=86.22 E-value=0.15 Score=23.49 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=11.4
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999769999689999998
Q 000524 181 TLLLGPPASGKTTLLLAL 198 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~L 198 (1444)
.+++|+.++|||||+..|
T Consensus 27 i~iiGHVD~GKSTL~~~L 44 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNI 44 (245)
T ss_dssp EEEEECGGGTHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHH
T ss_conf 999952798999999999
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.05 E-value=0.2 Score=22.76 Aligned_cols=34 Identities=32% Similarity=0.421 Sum_probs=25.4
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1056884884999976999968999999846999
Q 000524 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 170 ~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
.+-|.-.|.-..++.||||+|||.|.++||++..
T Consensus 115 ~~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 115 EFGGHRYASGMVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EETTEEEESEEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 8861436886388877998508899999999863
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=86.04 E-value=0.21 Score=22.58 Aligned_cols=49 Identities=4% Similarity=0.055 Sum_probs=35.3
Q ss_pred HHCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH
Q ss_conf 5199778994999999-999999999999999848988999954887789
Q 000524 1014 VANPSIIFMDEPTSGL-DARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDI 1062 (1444)
Q Consensus 1014 ~~~p~il~lDEPTsgL-D~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i 1062 (1444)
..+..+|++|+--.=. +......+...+......|+.+|+|+..|..++
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHC
T ss_conf 76213010112655058657788999999987631663899548751001
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.55 E-value=0.27 Score=21.88 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9997699996899999984
Q 000524 181 TLLLGPPASGKTTLLLALA 199 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~La 199 (1444)
.+++|+.++|||||...|+
T Consensus 9 i~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999478998999999999
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=85.48 E-value=0.21 Score=22.53 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=16.2
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 48849999769999689999
Q 000524 176 KPGRMTLLLGPPASGKTTLL 195 (1444)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL 195 (1444)
+.|..++..|.||+|||||-
T Consensus 12 ~~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 12 KEGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TTCCEEEEEECTTSCHHHHT
T ss_pred CCCCEEEEECCCCCCCCCCC
T ss_conf 99988999736879814221
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=85.34 E-value=0.27 Score=21.89 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 1999965799955789964518
Q 000524 886 VLTALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 886 ~~~al~G~sGaGKTTLl~~Lag 907 (1444)
.++||.|+-||||||..+.|+.
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.20 E-value=0.31 Score=21.44 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=13.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9997699996899999984
Q 000524 181 TLLLGPPASGKTTLLLALA 199 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~La 199 (1444)
.+++|+.++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999447999999999999
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.19 E-value=0.27 Score=21.86 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999557899645189
Q 000524 887 LTALMGVSGAGKTTLMDVLSGR 908 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~ 908 (1444)
..+|=|.-||||||+++.|+..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~~ 25 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899888599999999998
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=84.95 E-value=0.26 Score=22.02 Aligned_cols=20 Identities=35% Similarity=0.639 Sum_probs=17.1
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 48849999769999689999
Q 000524 176 KPGRMTLLLGPPASGKTTLL 195 (1444)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL 195 (1444)
+.|...+..|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.81 E-value=0.32 Score=21.41 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=12.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99976999968999999846
Q 000524 181 TLLLGPPASGKTTLLLALAG 200 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG 200 (1444)
++++|..|+|||||++-+..
T Consensus 5 ivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999888999998840
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=84.63 E-value=0.27 Score=21.86 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=20.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 289199996579995578996451897
Q 000524 883 RPGVLTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 883 ~pG~~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
+|+. ..++||+|+|||-|.+.||...
T Consensus 67 p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 67 SKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCC-EEEECCCCCCHHHHHHHHHHHC
T ss_conf 8753-2441899863789999998644
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.48 E-value=0.33 Score=21.32 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965799955789964518
Q 000524 887 LTALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag 907 (1444)
.+.++|.+|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999888999998840
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.41 E-value=0.2 Score=22.77 Aligned_cols=63 Identities=17% Similarity=0.355 Sum_probs=37.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 1110112699887679988889999999951997789949999999999999999999998489889999548
Q 000524 985 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1057 (1444)
Q Consensus 985 ~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hq 1057 (1444)
.+.=.++-.||.-.++++-..=+ -+.+-.+|+.| +..|+-+.+...+..+. ..+..+++.+-.
T Consensus 95 ~~~inliDtPGh~dF~~ev~~al-----~~~D~allVVd-a~eGv~~qT~~~~~~a~----~~~~p~i~viNK 157 (341)
T d1n0ua2 95 SFLINLIDSPGHVDFSSEVTAAL-----RVTDGALVVVD-TIEGVCVQTETVLRQAL----GERIKPVVVINK 157 (341)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHH-----HTCSEEEEEEE-TTTBSCHHHHHHHHHHH----HTTCEEEEEEEC
T ss_pred CEEEEEECCCCCHHHHHHHHHHH-----HHCCCEEEEEE-CCCCCCHHHHHHHHHHH----HCCCCEEEEEEC
T ss_conf 53799973787388999999887-----52372499986-56682046999999998----769986999877
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=84.40 E-value=0.13 Score=23.89 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579995578996451897
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRK 909 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~ 909 (1444)
-+.|.|+.|.|||||.+.+++..
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iL 52 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALL 52 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 08998899852999999998737
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=84.31 E-value=0.21 Score=22.52 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=18.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499997699996899999984699
Q 000524 179 RMTLLLGPPASGKTTLLLALAGKL 202 (1444)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~~LaG~l 202 (1444)
....+.||+++|||+++++|...+
T Consensus 105 n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 105 NTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 799998589887789999999983
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=84.20 E-value=0.17 Score=23.09 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=19.4
Q ss_pred EEECCEEEEEECCCCCCHHH-HH-HHH
Q ss_conf 88488499997699996899-99-998
Q 000524 174 IIKPGRMTLLLGPPASGKTT-LL-LAL 198 (1444)
Q Consensus 174 ~i~pG~lt~IlGpsGSGKST-LL-~~L 198 (1444)
.+++|+.++|.+|.|||||+ .+ .++
T Consensus 5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~ 31 (305)
T d2bmfa2 5 IFRKKRLTIMDLHPGAGKTKRYLPAIV 31 (305)
T ss_dssp SSSTTCEEEECCCTTSSTTTTHHHHHH
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 864699499997999978799999999
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=83.96 E-value=0.24 Score=22.21 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999769999689999998469999
Q 000524 181 TLLLGPPASGKTTLLLALAGKLDS 204 (1444)
Q Consensus 181 t~IlGpsGSGKSTLL~~LaG~l~~ 204 (1444)
..|=|+-||||||+++.|+..+..
T Consensus 8 I~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 8 IYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999888778899999999998734
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=83.75 E-value=0.33 Score=21.35 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 289199996579995578996451
Q 000524 883 RPGVLTALMGVSGAGKTTLMDVLS 906 (1444)
Q Consensus 883 ~pG~~~al~G~sGaGKTTLl~~La 906 (1444)
+|---++++|.-++|||||++.|.
T Consensus 1 kp~iNi~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 1 KPHLNLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 995189999447999999999999
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.73 E-value=0.34 Score=21.21 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965799955789964518
Q 000524 887 LTALMGVSGAGKTTLMDVLSG 907 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag 907 (1444)
.+.++|.+|+|||||+.-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999967
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.28 E-value=0.21 Score=22.58 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999965799955789964518978
Q 000524 887 LTALMGVSGAGKTTLMDVLSGRKT 910 (1444)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag~~~ 910 (1444)
-..|+|++|.|||++..-|+.+..
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=83.24 E-value=0.33 Score=21.34 Aligned_cols=20 Identities=45% Similarity=0.747 Sum_probs=17.0
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 28919999657999557899
Q 000524 883 RPGVLTALMGVSGAGKTTLM 902 (1444)
Q Consensus 883 ~pG~~~al~G~sGaGKTTLl 902 (1444)
+.|+.....|-||.|||||=
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=82.60 E-value=0.33 Score=21.28 Aligned_cols=19 Identities=47% Similarity=0.781 Sum_probs=16.4
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 8919999657999557899
Q 000524 884 PGVLTALMGVSGAGKTTLM 902 (1444)
Q Consensus 884 pG~~~al~G~sGaGKTTLl 902 (1444)
.|+.....|-||.|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEECCCCCCCCCCC
T ss_conf 9988999736879814221
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.48 E-value=0.38 Score=20.93 Aligned_cols=20 Identities=45% Similarity=0.710 Sum_probs=17.3
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 48849999769999689999
Q 000524 176 KPGRMTLLLGPPASGKTTLL 195 (1444)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL 195 (1444)
+.|..++..|-||+|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88987999736778812051
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.32 E-value=0.58 Score=19.74 Aligned_cols=27 Identities=33% Similarity=0.614 Sum_probs=20.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 884999976999968999999846999
Q 000524 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1444)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~~LaG~l~ 203 (1444)
.|++++++||=.|||||-|--.+.+..
T Consensus 1 ~G~L~li~GpMfsGKTt~Li~~~~~~~ 27 (133)
T d1xbta1 1 RGQIQVILGPMFSGKSTELMRRVRRFQ 27 (133)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 947999991416789999999999999
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=80.91 E-value=0.36 Score=21.06 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=9.5
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 999657999557899
Q 000524 888 TALMGVSGAGKTTLM 902 (1444)
Q Consensus 888 ~al~G~sGaGKTTLl 902 (1444)
+.|.|+.|+||||.|
T Consensus 27 ~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 27 LLIMAGAGSGKTRVL 41 (318)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHH
T ss_conf 899952986689999
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=80.11 E-value=0.41 Score=20.72 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=10.3
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 999657999557899
Q 000524 888 TALMGVSGAGKTTLM 902 (1444)
Q Consensus 888 ~al~G~sGaGKTTLl 902 (1444)
+.|.|+.|+||||.|
T Consensus 17 ~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEECCCTTSCHHHHH
T ss_pred EEEEEECCCCHHHHH
T ss_conf 899962884389999
|