Citrus Sinensis ID: 000529
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1441 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.977 | 0.982 | 0.706 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.984 | 0.996 | 0.677 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.981 | 0.984 | 0.691 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.998 | 0.987 | 0.677 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.998 | 0.987 | 0.677 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | no | no | 0.987 | 0.985 | 0.671 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.988 | 0.982 | 0.654 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.988 | 0.973 | 0.671 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.985 | 0.985 | 0.664 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.975 | 0.957 | 0.661 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2139 bits (5542), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1007/1425 (70%), Positives = 1188/1425 (83%), Gaps = 16/1425 (1%)
Query: 17 SHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSQGEAFEVDVSNL 76
S+S WR V FS SSR+EDDEEALKWAA+EKLPT++RL+KGLL SQG A EVD+++L
Sbjct: 26 SNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLPTFDRLRKGLLFGSQGAAAEVDINDL 85
Query: 77 GLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKA 136
G QER+ L+ +LV V + DNEKFLLKLKNRI+RVGI LPT+EVR+EHL I+A+A++ S++
Sbjct: 86 GFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNIDADAYVGSRS 145
Query: 137 LPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLL 196
LP+F F T E LLN LHIL S K+ LTILKD+SGI+KP R+TLLLGPPSSGKTTLLL
Sbjct: 146 LPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGPPSSGKTTLLL 205
Query: 197 ALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGV 256
ALAGKLDP+LKV+G+V+YNGH + EFVP+RTAAYISQHD HIGEMTVRETL F+ARCQGV
Sbjct: 206 ALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGV 265
Query: 257 GTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316
G+R+EML ELSRREKAA IKPD DID++MKAA+TEG+EANV+TDY LK+LGLDICADTMV
Sbjct: 266 GSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDICADTMV 325
Query: 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGT 376
GD+M RG+SGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN +Q++ I GT
Sbjct: 326 GDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILKGT 385
Query: 377 AVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
AVISLLQPAPETYNLFDDIILLSDG IVYQGPR+ VLEFFESMGFKCP+RKGVADFLQEV
Sbjct: 386 AVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVADFLQEV 445
Query: 437 TSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKV 496
TSKKDQ+QYW+ ++ PYRF+ +EF A+QSFHVG+KL DEL TPFDK+K H AALT +
Sbjct: 446 TSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAALTNEK 505
Query: 497 YGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGI 556
YG+GK+ELLK CT RELLLMKRNSFVY+FK Q+ + L+ MTLFFRT+M +D+ DGGI
Sbjct: 506 YGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTTDDGGI 565
Query: 557 YAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEP 616
YAGALFF ++M +F+G +E++MTI KLPVFYKQRD FFP WAYAIPSWILKIP++ +E
Sbjct: 566 YAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPVTLVEV 625
Query: 617 AVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVL 676
+WV L+YYVIG+DPN RF KQ+LLL+ NQM SG+FRF+GA+GR + VA TFGSFA+L
Sbjct: 626 GLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFGSFALL 685
Query: 677 VLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQV 736
+ ALGGFVLSR++VK WW W YW SP+MY+ N IL NEF G W P E+LG V
Sbjct: 686 LQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGSTV 745
Query: 737 LESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNR 796
++SR FF AYWYW+G+GAL GF ++ N ++LAL +LN F+KP+AV+ E+ E+ E
Sbjct: 746 VKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPEDGENAEN--- 802
Query: 797 IGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMP 856
GE + + S++E S K+GMVLPFEP+S+TFD+VVYSVDMP
Sbjct: 803 ----------GEVSSQITSTDGGDSISE---SQNNKKGMVLPFEPHSITFDDVVYSVDMP 849
Query: 857 QQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIR 916
Q+MK QG ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I+
Sbjct: 850 QEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIK 909
Query: 917 ISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVME 976
ISGYPKKQETFARISGYCEQNDIHSP+VTVYESL YSAWLRLP +V+ +TRKMF++EVME
Sbjct: 910 ISGYPKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFVDEVME 969
Query: 977 LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
LVEL PLR +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR
Sbjct: 970 LVELGPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1029
Query: 1037 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIP 1096
TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+E+YVGPLG HSCHLI YFE+ P
Sbjct: 1030 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNP 1089
Query: 1097 GVEKIKDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRRNKLLIEDLSKPAPGSKD 1156
GV KIK+GYNPATWMLEV+AS+QE+ LG+DF ++YK S+LYRRNK LI +L P PGSKD
Sbjct: 1090 GVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALISELGVPRPGSKD 1149
Query: 1157 LHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGGKTEK 1216
LHF TQYSQS ++Q +ACLWKQHWSYWRNPAYTAVRF+FT FIAL+ G++FWDLG K K
Sbjct: 1150 LHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSK 1209
Query: 1217 RQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEI 1276
QDL NAMGSM+ A++FLG + SVQPVV +ER VFYRE AAGM+S IP+A Q+ IEI
Sbjct: 1210 SQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEI 1269
Query: 1277 PYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPTHHIASI 1336
PY+FVQS+ Y IVYAM+ F+W KFFWY+F M+F LL+FT YGM VAVTP ++ASI
Sbjct: 1270 PYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASI 1329
Query: 1337 VSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIASQYGDVEDKIETGETV 1396
V+ F+G+W LFSGFIIPRPR+P+WWRWYYWANP+AWTLYGL+ASQ+GD++ K+ ETV
Sbjct: 1330 VAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQTKLSDNETV 1389
Query: 1397 KHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQRR 1441
+ FLR Y+GFKH FLG VA VL A+ +F F IK FNFQRR
Sbjct: 1390 EQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2069 bits (5361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 978/1443 (67%), Positives = 1168/1443 (80%), Gaps = 25/1443 (1%)
Query: 3 ESHEIYLASTTSHRSHSRWRTGS-VGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLL 61
E + AS + R+ S W+ S FS SSREEDDEEAL+WAA+EKLPT++RL+KG+L
Sbjct: 2 EGTSFHQASNSMRRNSSVWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKGIL 61
Query: 62 TTSQ--GEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEV 119
T S G E+D+ LG Q+ ++L+ +L+ V + ++EK L KLK RI+RVGI LPT+EV
Sbjct: 62 TASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEV 121
Query: 120 RFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGR 179
RF+HL +EAE + +ALP+F F + + LN LH++P+ KK TIL DVSGIVKPGR
Sbjct: 122 RFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGR 181
Query: 180 LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIG 239
+ LLLGPPSSGKTTLLLALAGKLD LK +GRVTYNGH M+EFVP+RTAAYI Q+D HIG
Sbjct: 182 MALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIG 241
Query: 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVIT 299
EMTVRET A+AAR QGVG+RY+MLTEL+RREK A IKPDPDID+FMKA ST GE+ NV+T
Sbjct: 242 EMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMT 301
Query: 300 DYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 359
DY LK+LGL++CADTMVGD+M RG+SGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 302 DYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTT 361
Query: 360 FQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 419
+QIVN + +HI +GTA+ISLLQPAPET+NLFDDIIL+++G+I+Y+GPR+ V+EFFE+M
Sbjct: 362 YQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETM 421
Query: 420 GFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQ 479
GFKCP RKGVADFLQEVTSKKDQ QYWA +D PYRF++V+EF AFQSFHVG+++ DEL
Sbjct: 422 GFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELA 481
Query: 480 TPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMT 539
PFDK+KSH AALTTK YGVG +EL+K SRE LLMKRNSFVY FK Q+ + + MT
Sbjct: 482 LPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMT 541
Query: 540 LFFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWA 599
LFFRT+M K + DG +Y GALFF ++M +F+G +E+SMTI KLPVFYKQRD F+P W
Sbjct: 542 LFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWV 601
Query: 600 YAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGA 659
Y++P W+LKIPISF+E A+ F++YYVIG+DPN GR FKQY+LL+ NQM S LF+ + A
Sbjct: 602 YSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAA 661
Query: 660 IGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGH 719
+GRN++VA TFG+FA+LV ALGG VLSR+++KKWW W YW SP+MY QN ILANEF GH
Sbjct: 662 LGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGH 721
Query: 720 SWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEK 779
SW + S+E+LGV L+SR F HAYWYW+G GAL GF++L N GF LALTFLN K
Sbjct: 722 SWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGK 781
Query: 780 PRAVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPF 839
P+AVI EE SDE E S+ S EA KKRGMVLPF
Sbjct: 782 PQAVIAEEPASDET---------------------ELQSARSEGVVEAGANKKRGMVLPF 820
Query: 840 EPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 899
EP+S+TFD VVYSVDMPQ+M QG ED+LVLL GV+GAFRPGVLTALMGVSGAGKTTLM
Sbjct: 821 EPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLM 880
Query: 900 DVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP 959
DVLAGRKTGGYI G+I ISGYPK Q+TFARISGYCEQ DIHSP VTVYESL YSAWLRLP
Sbjct: 881 DVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLP 940
Query: 960 PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1019
EV+ RK+FIEEVMELVEL PLRQ+LVGLPG +GLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 941 KEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 1000
Query: 1020 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL+KRGG E+YVG
Sbjct: 1001 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVG 1060
Query: 1080 PLGHHSCHLISYFEAIPGVEKIKDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRR 1139
PLGH S HLI+YFE+I G+ KI +GYNPATWMLEVS +SQE ALGVDF +YK SELY+R
Sbjct: 1061 PLGHESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKR 1120
Query: 1140 NKLLIEDLSKPAPGSKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFI 1199
NK LI++LS+PAPGSKDL+F TQYSQS +Q MA LWKQHWSYWRNP YTAVRFLFT I
Sbjct: 1121 NKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGI 1180
Query: 1200 ALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAA 1259
AL+ G++FWDLGGKT+ RQDLSNAMGSM+TA++FLG + SVQPVV VER VFYRE AA
Sbjct: 1181 ALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAA 1240
Query: 1260 GMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTL 1319
GM+S +P+A AQ+ IEIPYV VQ+++Y IVYAM+ F+WTA KFFWY+F+MY + L FT
Sbjct: 1241 GMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTF 1300
Query: 1320 YGMTAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLI 1379
YGM AVA+TP HHIAS+VS+ F+G+W LFSGF+IPRP +P+WW WYYW P+AWTLYGLI
Sbjct: 1301 YGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLI 1360
Query: 1380 ASQYGDV-EDKIETGETVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNF 1438
ASQ+GD+ E ++ +VK F+R++YG++ FLG VA + + F LF ++F +GIK FNF
Sbjct: 1361 ASQFGDITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNF 1420
Query: 1439 QRR 1441
Q+R
Sbjct: 1421 QKR 1423
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2035 bits (5272), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 992/1434 (69%), Positives = 1188/1434 (82%), Gaps = 20/1434 (1%)
Query: 9 LASTTSHRSHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSQGEA 68
+ + S+S WR FS S+R+EDDEEALKWAA+EKLPTY+RL+KG+L SQG A
Sbjct: 22 MRGSIRENSNSIWRNNGAEVFSRSARDEDDEEALKWAALEKLPTYDRLRKGILFGSQGAA 81
Query: 69 FEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEA 128
EVDV + G+ ER+ L+ +LV V + DNEKFLLKLKNRI+RVGI P++EVRFEHL I+A
Sbjct: 82 AEVDVDDSGVLERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDFPSIEVRFEHLNIDA 141
Query: 129 EAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPS 188
+A++ S+ALP+FT F + E LL+ +HILPS K+ +TILKDVSGIVKP R+TLLLGPP
Sbjct: 142 DAYVGSRALPTFTNFISNFVEGLLDSIHILPSKKRQVTILKDVSGIVKPCRMTLLLGPPG 201
Query: 189 SGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLA 248
SGKTTLLLALAGKLD +LKV+G+VTYNGH + EFVP+RTAAYISQHD HIGEMTVRETL
Sbjct: 202 SGKTTLLLALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLE 261
Query: 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL 308
F+ARCQGVG+RYEML ELSRREKAA IKPD DID+FMKAASTEG+EA V+TDY LK+LGL
Sbjct: 262 FSARCQGVGSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVTDYILKILGL 321
Query: 309 DICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQ 368
DICADTMVGD+M RG+SGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN KQ
Sbjct: 322 DICADTMVGDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTTYSIVNSLKQ 381
Query: 369 NIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKG 428
++ I GTA+ISLLQPAPETYNLFDDIILLSDG IVY+GPRE VLEFFESMGFKCP+RKG
Sbjct: 382 SVRIMKGTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESMGFKCPERKG 441
Query: 429 VADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSH 488
ADFLQEVTSKKDQ+QYW +D PYRF+ +EF A+QSFHVG+K+SDEL+T FDKSKSH
Sbjct: 442 AADFLQEVTSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELKTTFDKSKSH 501
Query: 489 RAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHK 548
AALTT+ YG+GKR+LLK CT RELLLM+RNSFVY+FK Q+ I L+ MT+FFRTKM +
Sbjct: 502 PAALTTQKYGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMTIFFRTKMPR 561
Query: 549 DSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILK 608
DS DGGIY+GALFF ++M +F+G +E+ MT+ KLPVFYKQRDF F+P WAYAIPSWILK
Sbjct: 562 DSAEDGGIYSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWAYAIPSWILK 621
Query: 609 IPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAY 668
IP++F E +WVFL+YYV+G+DPN GRFFKQ+LLLL NQM S LFRF+ A+GR + VA
Sbjct: 622 IPVTFAEVGMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAAVGRTMGVAS 681
Query: 669 TFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTS 728
TFG+FA+L+ ALGGF+L+R +VK WW W YW+SP+MY+ N IL NEF G WK
Sbjct: 682 TFGAFALLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAGG 741
Query: 729 TESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEF 788
TE LG V+ +R FF AYWYW+G+GAL GFI++ N+ +++AL +LN F+KP+A I++E
Sbjct: 742 TEPLGAAVVRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDKPQATISDES 801
Query: 789 ESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDE 848
E++E ++ + Q+++ E + AS KK+GMVLPF+P+S+TFDE
Sbjct: 802 ENNESES----SPQITSTQEGDS---------------ASENKKKGMVLPFDPHSITFDE 842
Query: 849 VVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 908
VVYSVDMP +M+ G +++LVLL VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG
Sbjct: 843 VVYSVDMPPEMRESGTSDNRLVLLKSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 902
Query: 909 GYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRK 968
GYI G I+ISGYPKKQ+TFARISGYCEQNDIHSP+VTV+ESL YSAWLRLP +VN E R
Sbjct: 903 GYIDGSIKISGYPKKQDTFARISGYCEQNDIHSPYVTVFESLVYSAWLRLPQDVNEEKRM 962
Query: 969 MFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
MF+EEVM+LVEL PLR +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA
Sbjct: 963 MFVEEVMDLVELTPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1022
Query: 1029 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHL 1088
RAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+E+YVGPLG SCHL
Sbjct: 1023 RAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRQSCHL 1082
Query: 1089 ISYFEAIPGVEKIKDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRRNKLLIEDLS 1148
I YFE+IPGV KI +GYNPATWMLEV+ASSQE+ALGVDF D+YK+S+LYRRNK LI++LS
Sbjct: 1083 IKYFESIPGVSKIVEGYNPATWMLEVTASSQEMALGVDFTDLYKKSDLYRRNKALIDELS 1142
Query: 1149 KPAPGSKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFW 1208
P PG+ DLHF +++SQ ++Q MACLWKQHWSYWRNPAYTAVR +FT FIAL+ G++FW
Sbjct: 1143 VPRPGTSDLHFDSEFSQPFWTQCMACLWKQHWSYWRNPAYTAVRLIFTTFIALIFGTMFW 1202
Query: 1209 DLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWA 1268
D+G K + QDL NAMGSM+ A++FLG + SVQPVV VER VFYRE AAGM+S IP+A
Sbjct: 1203 DIGTKVSRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYSAIPYA 1262
Query: 1269 LAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVT 1328
AQ++IEIPY+FVQ+ +Y IVY+M+ F+WT AKFFW F+M+F L+FT +GM VAVT
Sbjct: 1263 FAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMTVAVT 1322
Query: 1329 PTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIASQYGDVED 1388
P ++ASIV+ F+ +W LFSGFI+PRPRIPIWWRWYYW PIAWTLYGL+ASQ+GD++D
Sbjct: 1323 PNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDLQD 1382
Query: 1389 KI-ETGETVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQRR 1441
+ + +TV+ FLR +GFKH FLG VA V++AFA +F F LGIK FNFQRR
Sbjct: 1383 PLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2023 bits (5241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 985/1453 (67%), Positives = 1156/1453 (79%), Gaps = 14/1453 (0%)
Query: 1 MEESHEIYLASTTSHRSHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGL 60
+++ + L + S S WR G FS SSREEDDEEAL+WAA+EKLPTY+R+++ +
Sbjct: 7 IQKVASMRLGGSMRGDSGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAI 65
Query: 61 L-------TTSQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIV 113
L G VDV LG +ER+ L+ +LV V + DNEKFLLKLK+R++RVGI
Sbjct: 66 LPLGGDDGAGDGGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGID 125
Query: 114 LPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSG 173
+PT+EVRFEHL EAE + + LP+ T E+ N L ILP+ K+ + +L DVSG
Sbjct: 126 MPTIEVRFEHLEAEAEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSG 185
Query: 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQ 233
I+KP R+TLLLGPP SGKTTLLLALAG+L LK SG+VTYNGH M+EFVPERTAAYISQ
Sbjct: 186 IIKPRRMTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQ 245
Query: 234 HDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGE 293
HD HIGEMTVRETLAF+ARCQGVG+R++MLTELSRREKAA IKPD DID FMKAA+ G+
Sbjct: 246 HDLHIGEMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQ 305
Query: 294 EANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTG 353
EANV TDY LK+LGL+ICADTMVGDEM RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTG
Sbjct: 306 EANVNTDYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTG 365
Query: 354 LDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 413
LDSSTTFQIVN +Q +HI GTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE VL
Sbjct: 366 LDSSTTFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVL 425
Query: 414 EFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQK 473
EFFESMGFKCP RKGVADFLQEVTSKKDQ QYWA D+PYRFV V+EFV+AFQSFH G+
Sbjct: 426 EFFESMGFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRA 485
Query: 474 LSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSI 533
+++EL PFDKSKSH AAL T YG +ELLKA RE+LLMKRNSFVY+F+ Q+ +
Sbjct: 486 IANELAVPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVV 545
Query: 534 TLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFK 593
+L+ MTLFFRTKM +DSVT GGIY GALFF ++M +F+GF+E+++T+ KLPVF+KQRD
Sbjct: 546 SLIAMTLFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLL 605
Query: 594 FFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGL 653
F+P W+Y IPSWILKIPI+F+E +VFL+YYVIG+D N G FFKQYLL+LA NQM L
Sbjct: 606 FYPAWSYTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSL 665
Query: 654 FRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILA 713
FRF+G RN++VA F SF +L+ + LGGF+L+RE+VKKWW W YW SP+MYAQN I
Sbjct: 666 FRFIGGAARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISV 725
Query: 714 NEFLGHSWKKF--TPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALAL 771
NE +GHSW K + S E+LGVQVL+SR F A WYW+G GA+ GF +L N F LAL
Sbjct: 726 NELMGHSWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLAL 785
Query: 772 TFLNQFEKPRAVITEEFESDEQDN---RIGGTVQLSNCGESGNDNRERNSSSSLTEAEAS 828
T+L + R ++EE +++ N I G V LS+ + S++ + + +
Sbjct: 786 TYLRPYGNSRQSVSEEELKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDD-T 844
Query: 829 HPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALM 888
+RGMVLPF P SL+FD V YSVDMPQ+MK QGV +D+L LL GVSG+FRPGVLTALM
Sbjct: 845 EVTQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALM 904
Query: 889 GVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948
GVSGAGKTTLMDVLAGRKTGGYI G I ISGYPKKQETFAR+SGYCEQNDIHSP VTVYE
Sbjct: 905 GVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYE 964
Query: 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAV 1008
SL +SAWLRLP +V+S TRKMFIEEVMELVELK LR +LVGLPGVNGLSTEQRKRLTIAV
Sbjct: 965 SLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAV 1024
Query: 1009 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1068
ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFL
Sbjct: 1025 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFL 1084
Query: 1069 MKRGGREVYVGPLGHHSCHLISYFEAIPGVEKIKDGYNPATWMLEVSASSQEVALGVDFC 1128
MKRGG E+Y GPLGHHS LI YFE+IPGV KIKDGYNPATWMLEV+ QE ALGVDF
Sbjct: 1085 MKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFS 1144
Query: 1129 DIYKRSELYRRNKLLIEDLSKPAPGSKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAY 1188
DIYK+SELY+RNK LI+DLS+PAP S DL+F TQYSQS+ +Q MACLWKQ+ SYWRNP Y
Sbjct: 1145 DIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPY 1204
Query: 1189 TAVRFLFTAFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFV 1248
AVRF FT IALL G+IFWDLGGK K QDL NAMGSM+ A++F+G C SVQPVV V
Sbjct: 1205 NAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAV 1264
Query: 1249 ERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIF 1308
ER VFYRE AAGM+S P+A Q++IEIPY VQ+ +Y IVYAM+ F+WTAAKFFWY+F
Sbjct: 1265 ERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLF 1324
Query: 1309 YMYFALLFFTLYGMTAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWA 1368
+M F LL+FT YGM AV +TP +HIASIVS+ F+ +W LFSGF+IPRPR+PIWWRWY WA
Sbjct: 1325 FMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWA 1384
Query: 1369 NPIAWTLYGLIASQYGDVEDKIETGETVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGIL 1428
P+AWTLYGL+ SQ+GD+E +E G VK F+ +Y+GFKHS+LG VA V+ AFA LF L
Sbjct: 1385 CPVAWTLYGLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASL 1444
Query: 1429 FPLGIKQFNFQRR 1441
F I +FNFQ+R
Sbjct: 1445 FGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2019 bits (5232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 984/1453 (67%), Positives = 1155/1453 (79%), Gaps = 14/1453 (0%)
Query: 1 MEESHEIYLASTTSHRSHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGL 60
+++ + L + S S WR G FS SSREEDDEEAL+WAA+EKLPTY+R+++ +
Sbjct: 7 IQKVASMRLGGSMRGDSGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAI 65
Query: 61 L-------TTSQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIV 113
L G VDV LG +ER+ L+ +LV V + DNEKFLLKLK+R++RVGI
Sbjct: 66 LPLGGDDGAGDGGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGID 125
Query: 114 LPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSG 173
+PT+EVRFEHL EAE + + LP+ T E+ N L ILP+ K+ + +L DVSG
Sbjct: 126 MPTIEVRFEHLEAEAEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSG 185
Query: 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQ 233
I+KP R+TLLLGPP SGKTTLLLALAG+L LK SG+VTYNGH M+EFVPERTAAYISQ
Sbjct: 186 IIKPRRMTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQ 245
Query: 234 HDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGE 293
HD HIGEMTVRETLAF+ARCQGVG+R++MLTELSRREKAA IKPD DID FMKAA+ G+
Sbjct: 246 HDLHIGEMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQ 305
Query: 294 EANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTG 353
EANV TDY LK+LGL+ICADTMVGDEM RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTG
Sbjct: 306 EANVNTDYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTG 365
Query: 354 LDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 413
LDSSTTFQIVN +Q +HI GTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE VL
Sbjct: 366 LDSSTTFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVL 425
Query: 414 EFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQK 473
EFFES GFKCP RKGVADFLQEVTSKKDQ QYWA D+PYRFV V+EFV+AFQSFH G+
Sbjct: 426 EFFESTGFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRA 485
Query: 474 LSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSI 533
+++EL PFDKSKSH AAL T YG +ELLKA RE+LLMKRNSFVY+F+ Q+ +
Sbjct: 486 IANELAVPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVV 545
Query: 534 TLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFK 593
+L+ MTLFFRTKM +DSVT GGIY GALFF ++M +F+GF+E+++T+ KLPVF+KQRD
Sbjct: 546 SLIAMTLFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLL 605
Query: 594 FFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGL 653
F+P W+Y IPSWILKIPI+F+E +VFL+YYVIG+D N G FFKQYLL+LA NQM L
Sbjct: 606 FYPAWSYTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSL 665
Query: 654 FRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILA 713
FRF+G RN++VA F SF +L+ + LGGF+L+RE+VKKWW W YW SP+MYAQN I
Sbjct: 666 FRFIGGAARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISV 725
Query: 714 NEFLGHSWKKF--TPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALAL 771
NE +GHSW K + S E+LGVQVL+SR F A WYW+G GA+ GF +L N F LAL
Sbjct: 726 NELMGHSWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLAL 785
Query: 772 TFLNQFEKPRAVITEEFESDEQDN---RIGGTVQLSNCGESGNDNRERNSSSSLTEAEAS 828
T+L + R ++EE +++ N I G V LS+ + S++ + + +
Sbjct: 786 TYLRPYGNSRQSVSEEELKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDD-T 844
Query: 829 HPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALM 888
+RGMVLPF P SL+FD V YSVDMPQ+MK QGV +D+L LL GVSG+FRPGVLTALM
Sbjct: 845 EVTQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALM 904
Query: 889 GVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948
GVSGAGKTTLMDVLAGRKTGGYI G I ISGYPKKQETFAR+SGYCEQNDIHSP VTVYE
Sbjct: 905 GVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYE 964
Query: 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAV 1008
SL +SAWLRLP +V+S TRKMFIEEVMELVELK LR +LVGLPGVNGLSTEQRKRLTIAV
Sbjct: 965 SLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAV 1024
Query: 1009 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1068
ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFL
Sbjct: 1025 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFL 1084
Query: 1069 MKRGGREVYVGPLGHHSCHLISYFEAIPGVEKIKDGYNPATWMLEVSASSQEVALGVDFC 1128
MKRGG E+Y GPLGHHS LI YFE+IPGV KIKDGYNPATWMLEV+ QE ALGVDF
Sbjct: 1085 MKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFS 1144
Query: 1129 DIYKRSELYRRNKLLIEDLSKPAPGSKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAY 1188
DIYK+SELY+RNK LI+DLS+PAP S DL+F TQYSQS+ +Q MACLWKQ+ SYWRNP Y
Sbjct: 1145 DIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPY 1204
Query: 1189 TAVRFLFTAFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFV 1248
AVRF FT IALL G+IFWDLGGK K QDL NAMGSM+ A++F+G C SVQPVV V
Sbjct: 1205 NAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAV 1264
Query: 1249 ERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIF 1308
ER VFYRE AAGM+S P+A Q++IEIPY VQ+ +Y IVYAM+ F+WTAAKFFWY+F
Sbjct: 1265 ERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLF 1324
Query: 1309 YMYFALLFFTLYGMTAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWA 1368
+M F LL+FT YGM AV +TP +HIASIVS+ F+ +W LFSGF+IPRPR+PIWWRWY WA
Sbjct: 1325 FMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWA 1384
Query: 1369 NPIAWTLYGLIASQYGDVEDKIETGETVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGIL 1428
P+AWTLYGL+ SQ+GD+E +E G VK F+ +Y+GFKHS+LG VA V+ AFA LF L
Sbjct: 1385 CPVAWTLYGLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASL 1444
Query: 1429 FPLGIKQFNFQRR 1441
F I +FNFQ+R
Sbjct: 1445 FGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1994 bits (5167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 962/1432 (67%), Positives = 1175/1432 (82%), Gaps = 9/1432 (0%)
Query: 15 HRSHSRWR--TGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSQGEAFEVD 72
R+ S WR +G AF S REEDDEEALKWAAIEKLPTY+R++KG+LT G EVD
Sbjct: 17 RRTASSWRGTSGRSDAFGRSVREEDDEEALKWAAIEKLPTYDRMRKGILTA--GGVEEVD 74
Query: 73 VSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFL 132
+ LGLQER+ LI +LV E DNE+FLLKL++R+ERVGI PT+EVRFE+L+I+AEA++
Sbjct: 75 IGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIEVRFENLSIDAEAYV 134
Query: 133 ASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKT 192
++ +P+FT FF+ D+L+ + I+ S K+ ++IL D+SGI++PGR++LLLGPP SGKT
Sbjct: 135 GNRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISILHDISGIIRPGRMSLLLGPPGSGKT 194
Query: 193 TLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAAR 252
+LLLALAGKLD +LKVSGRVTYNGH+MDEFVP+RT+AYI QHD HIGEMTVRETLAF+AR
Sbjct: 195 SLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFSAR 254
Query: 253 CQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICA 312
CQGVGTRY+MLTELSRREK A IKPDPDIDV+MKA S EG+E+ V+TDY LK+LGL+ICA
Sbjct: 255 CQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQES-VVTDYILKILGLEICA 313
Query: 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI 372
DTMVGD M RG+SGGQKKRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN +Q++HI
Sbjct: 314 DTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSVHI 373
Query: 373 NSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADF 432
GTA+I+LLQPAPETY+LFDDI+LLS+GQIVYQGPRE +LEFFE+MGFKCP+RKGVADF
Sbjct: 374 LGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVADF 433
Query: 433 LQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAAL 492
LQEVTS+KDQ QYW +D PYR++ V +F AF+ FHVG+ L EL+ PFD++++H AAL
Sbjct: 434 LQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPAAL 493
Query: 493 TTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVT 552
TT YG+ K EL KAC SRE LLMKRNSFVYIFK++Q+ + + MT+F RTKMH+ SV
Sbjct: 494 TTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRSVE 553
Query: 553 DGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPIS 612
DG I+ GA+F +V LF+GFAE++M+I KLP+FYKQRD F+P WAYA+P+W+LKIPIS
Sbjct: 554 DGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIPIS 613
Query: 613 FLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGS 672
FLE AVW+ ++YYV+G+DPN RFF+ Y+LL+ +QM SGLFR L A+GR +VVA TFGS
Sbjct: 614 FLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTFGS 673
Query: 673 FAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFT-PT-STE 730
FA L+LL LGGF++SRE +KKWW W YWSSP+MYAQN I NEFLGHSW K PT S +
Sbjct: 674 FAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQSND 733
Query: 731 SLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFES 790
+LGVQVL+ R F A WYW+G+GAL G+I+L N+ F L L +L+ K +AV++EE
Sbjct: 734 TLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEELR 793
Query: 791 DEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVV 850
++ NR G V+L G + + N ++++ E + +KRGMVLPF P S+TFD +
Sbjct: 794 EKHVNRTGENVELLTLG-TDSQNSPSDANAGRGEITGADTRKRGMVLPFTPLSITFDNIR 852
Query: 851 YSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 910
YSVDMPQ+MK +GV ED+L+LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY
Sbjct: 853 YSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 912
Query: 911 ITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMF 970
I GDI ISGYPKKQETFARI+GYCEQNDIHSP VTVYESL YSAWLRLP EV+SE RKMF
Sbjct: 913 IEGDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDSEARKMF 972
Query: 971 IEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
+EEVMELVEL LR +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA
Sbjct: 973 VEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1032
Query: 1031 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLIS 1090
AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG E+YVGPLGH+SCHLI+
Sbjct: 1033 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNSCHLIN 1092
Query: 1091 YFEAIPGVEKIKDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRRNKLLIEDLSKP 1150
YFE I GV KIKDGYNPATWMLEV+ +QE LG++F ++Y+ S+LY+RNK LI +LS P
Sbjct: 1093 YFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILGINFAEVYRNSDLYQRNKTLISELSTP 1152
Query: 1151 APGSKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDL 1210
PGS DLHF TQ+SQ F+Q MACLWKQH SYWRNP+YTA R FT IAL+ G+IF +L
Sbjct: 1153 PPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRNPSYTATRIFFTTVIALIFGTIFLNL 1212
Query: 1211 GGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALA 1270
G K KR DL N++GSM+ A++F+G + +VQP+V VER VFYRE AAGM+S +P+A A
Sbjct: 1213 GKKINKRLDLFNSLGSMYAAVLFIGIQNGQTVQPIVDVERTVFYREKAAGMYSALPYAFA 1272
Query: 1271 QIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPT 1330
Q++IEIP++F+Q+++Y IVY+++ FDWT KFFWY+F+M+F ++FT YGM AVA+TP
Sbjct: 1273 QVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMAVAMTPN 1332
Query: 1331 HHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIASQYGDVEDK- 1389
IA+IVST F+ +W +F+GF+IPRPRIPIWWRWY WA P+AWTLYGL+ASQYGD+ +
Sbjct: 1333 SDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVASQYGDITNST 1392
Query: 1390 IETGETVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQRR 1441
+E GE V+ ++R Y+GF+H +LG VA ++ FAALF +F IK FNFQRR
Sbjct: 1393 LEDGEVVQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQRR 1444
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1971 bits (5106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 944/1442 (65%), Positives = 1148/1442 (79%), Gaps = 18/1442 (1%)
Query: 15 HRSHSRWRTGSVGAFSMSSR----EEDDEEALKWAAIEKLPTYNRLKKGLLTTSQ----- 65
R S WR+G FS SS E+DDEEAL+WAA+E+LPTY+R+++G+L S
Sbjct: 12 RREGSMWRSGG-DVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDGGA 70
Query: 66 -GEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHL 124
GE EVDV LG +E + LI +LV + D+E+FLLKL+ R++RVGI PT+EVRFE+L
Sbjct: 71 GGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFENL 130
Query: 125 TIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLL 184
+EA+ + ++ LP+ T E + N LHILP+ K+ +T+L DVSGI+KP R+TLLL
Sbjct: 131 EVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTLLL 190
Query: 185 GPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244
GPP SGKTTLLLALAGKLD LKVSG+VTYNGH M EFVPERTAAYISQHD HIGEMTVR
Sbjct: 191 GPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMTVR 250
Query: 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLK 304
ETLAF+ARCQGVGTRYEMLTEL+RREKAA IKPD DID++MKA++ G+E++V+TDY LK
Sbjct: 251 ETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYILK 310
Query: 305 VLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN 364
+LGLDICADT+VG+EM RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN
Sbjct: 311 ILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQIVN 370
Query: 365 CFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCP 424
+Q IHI GTAVISLLQPAPETYNLFDDIILLSDGQ+VYQGPRE VLEFFE MGF+CP
Sbjct: 371 SLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFRCP 430
Query: 425 KRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDK 484
RKGVADFLQEVTS+KDQ QYW +DRPYRFV V++F AF+SFHVG+ + +EL PFD+
Sbjct: 431 ARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPFDR 490
Query: 485 SKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRT 544
++SH AAL T YGV ++ELLKA RELLLMKRN+F+YIFK + + + L+ MT FFRT
Sbjct: 491 TRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFFRT 550
Query: 545 KMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPS 604
M D G IY GAL+F + +F+GFAE++MT++KLPVF+KQRD FFP WAY IPS
Sbjct: 551 SMRHDR-DYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTIPS 609
Query: 605 WILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNL 664
WIL+IPI+FLE V+VF++YYVIG+DP+ RFFKQYLLLLA NQM S LFRF+ IGR++
Sbjct: 610 WILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGRDM 669
Query: 665 VVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKF 724
VV++TFG ++L ALGGF+L+R +VKKWW W YW SP+ YAQN I NEFLGHSW +
Sbjct: 670 VVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWSQI 729
Query: 725 TPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVI 784
P +LGV VL+SR F A WYW+GLGAL G+ LL N+ + +AL+ L+ F A +
Sbjct: 730 LPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHASM 789
Query: 785 TEEFESDEQDNRIGGTVQLSNCGESGNDNRE----RNSSSSLTEAEASHPKKRGMVLPFE 840
+E+ ++ N G V+ +S E + +S + A++S +K GMVLPF
Sbjct: 790 SEDALKEKHANLTGEVVEGQKDTKSRKQELELSHIADQNSGINSADSSASRK-GMVLPFA 848
Query: 841 PYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 900
P S++F++V YSVDMP+ MK QG+ ED+L+LL GVSG+FRPGVLTALMGVSGAGKTTLMD
Sbjct: 849 PLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAGKTTLMD 908
Query: 901 VLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP 960
VLAGRKTGGYI GDIRISGYPKKQETFARISGYCEQNDIHSP VTVYESL +SAWLRLP
Sbjct: 909 VLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWLRLPS 968
Query: 961 EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020
EV+SE RKMFIEEVM+LVEL LR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 969 EVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1028
Query: 1021 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
EPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG E+YVGP
Sbjct: 1029 EPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGP 1088
Query: 1081 LGHHSCHLISYFEAIPGVEKIKDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRRN 1140
+G +S LI YFE I GV +IKDGYNPATWMLEV++S+QE LGVDF +IY++SELY+RN
Sbjct: 1089 VGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQSELYQRN 1148
Query: 1141 KLLIEDLSKPAPGSKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIA 1200
K LIE+LS P PGS DL+F TQYS+S +Q +ACLWKQ+WSYWRNP+YTAVR LFT IA
Sbjct: 1149 KELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLLFTIVIA 1208
Query: 1201 LLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAG 1260
L+ G++FW+LG +T+K+QDL NAMGSM+ A++++G + SVQPVV VER VFYRE AAG
Sbjct: 1209 LMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRERAAG 1268
Query: 1261 MFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLY 1320
M+S P+A Q+ IE+PY+ VQ+LIY +VY+M+ F+WT AKF WY+F+MYF LL+FT Y
Sbjct: 1269 MYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFY 1328
Query: 1321 GMTAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIA 1380
GM AV +TP IA+I+S+ F+ +W LFSG++IPRP+IP+WWRWY W P+AWTLYGL+A
Sbjct: 1329 GMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVA 1388
Query: 1381 SQYGDVEDKIE-TGETVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQ 1439
SQ+GD++ +E TV F+ DY+GF H+FL VA V + FA F LF I +FNFQ
Sbjct: 1389 SQFGDIQHVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQ 1448
Query: 1440 RR 1441
RR
Sbjct: 1449 RR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1964 bits (5087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 967/1440 (67%), Positives = 1141/1440 (79%), Gaps = 15/1440 (1%)
Query: 17 SHSRWRTGSVGAFSMSSRE------EDDEEALKWAAIEKLPTYNRLKKGLLTTSQGEAFE 70
+ S W + G FS S EDDEEAL+WAA+EKLPTY+R+++ +L +
Sbjct: 25 AASMWWSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGG 84
Query: 71 -------VDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEH 123
VDV +LG QER+ L+ +LV V E DNE+FLLKLK RI+RVGI +PT+EVRFEH
Sbjct: 85 GEAGKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEH 144
Query: 124 LTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLL 183
L EAE + + LP+ T E N L ILP+ K+ + IL DVSGIVKP R+TLL
Sbjct: 145 LEAEAEVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLL 204
Query: 184 LGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTV 243
LGPP SGKTTLLLALAG+L +K SG+VTYNGH M++FVP+RTAAYISQHD HIGEMTV
Sbjct: 205 LGPPGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTV 264
Query: 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYL 303
RETL+F+ARCQGVG+R++MLTELSRREKAA IKPD DID FMKA++ EG+E N+ITDY L
Sbjct: 265 RETLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYIL 324
Query: 304 KVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV 363
K+LGLDICADTMVGD+M RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIV
Sbjct: 325 KILGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIV 384
Query: 364 NCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKC 423
+Q IHI GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFFE MGFKC
Sbjct: 385 KSLRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKC 444
Query: 424 PKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFD 483
P+RKGVADFLQEVTS+KDQ+QYW D+PYR+V V++F +AFQSFH G+ +++EL TPFD
Sbjct: 445 PERKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFD 504
Query: 484 KSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFR 543
KSK+H AALTT YGV ELLKA RE LLMKRNSFVYIF+ Q+ ++ + MT+FFR
Sbjct: 505 KSKNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFR 564
Query: 544 TKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIP 603
TKMH+DSVTDG I+ GALFF+++M +F+G +E+ +TI KLPVF+KQRD FFP W Y IP
Sbjct: 565 TKMHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIP 624
Query: 604 SWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRN 663
SWILKIP+SF+E +VF+SYYVIG+DP+AGRFFKQYLL+LA NQM + LFRF+G RN
Sbjct: 625 SWILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARN 684
Query: 664 LVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKK 723
++VA FGSF +L+ + LGGF+L RE+VKKWW W YW SP+MYAQN I NEFLGHSW K
Sbjct: 685 MIVANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDK 744
Query: 724 F--TPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPR 781
S E+LGVQ L SR F A WYW+G GAL GFI+L N F LALT+L + K +
Sbjct: 745 VLNNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQ 804
Query: 782 AVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEP 841
++EE ++Q N G + + S N N+ +S A+ S P +RGMVLPF P
Sbjct: 805 PSVSEEELKEKQANINGNVLDVDTMASSTNLAIVDNTETSSEIADNSQPTQRGMVLPFAP 864
Query: 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 901
SLTFD + YSVDMPQ+MK G+ ED+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDV
Sbjct: 865 LSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDV 924
Query: 902 LAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPE 961
LAGRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VTV ESL +SAWLRLP +
Sbjct: 925 LAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKD 984
Query: 962 VNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021
V+S TRKMFIEEVMELVELKPLR +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE
Sbjct: 985 VDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1044
Query: 1022 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081
PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG E+YVGPL
Sbjct: 1045 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPL 1104
Query: 1082 GHHSCHLISYFEAIPGVEKIKDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRRNK 1141
GH S LI YFE I GV +IKDGYNPATWMLEVS SQE ALGVDFCDIY++SEL++RNK
Sbjct: 1105 GHQSSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFCDIYRKSELFQRNK 1164
Query: 1142 LLIEDLSKPAPGSKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIAL 1201
LI++LS P PGS +L+F T+YS S +Q +ACLWK H SYWRNP Y A+R FT IAL
Sbjct: 1165 ALIQELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIAL 1224
Query: 1202 LLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGM 1261
L G+IFWDLGGKT K QDL NAMGSM++A++F+G SVQPVV VER VFYRE AAGM
Sbjct: 1225 LFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAGM 1284
Query: 1262 FSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYG 1321
+S P+A Q+ IE PY VQS+IY IVY+M+ F WTAAKFFWY+F+M+F L+FT YG
Sbjct: 1285 YSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYG 1344
Query: 1322 MTAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIAS 1381
M AV +TP++H+ASIVS+ F+G+W LFSGFIIPRP++PIWWRWY W P+AWTLYGL+AS
Sbjct: 1345 MMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVAS 1404
Query: 1382 QYGDVEDKIETGETVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQRR 1441
Q+GD+ ++ G VK F+ +Y+ FKHS+LG VA V++AF LF LF I + NFQ+R
Sbjct: 1405 QFGDIMTPMDDGTPVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1464
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1949 bits (5050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 950/1429 (66%), Positives = 1146/1429 (80%), Gaps = 9/1429 (0%)
Query: 15 HRSHSRWRTGSVG-AFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSQGEAFEVDV 73
RS S WR+ S F SSREEDDEEALKWAA+EKLPTY+RL+KG++T GE EVD+
Sbjct: 20 RRSVSAWRSPSTSDVFGRSSREEDDEEALKWAALEKLPTYDRLRKGIMTGDGGEIQEVDI 79
Query: 74 SNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLA 133
LG QER+ L+ KLV E DNE+FLLKL+NR+ERVGI PT+EVRFEHL I AEAF+
Sbjct: 80 QGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIEVRFEHLNINAEAFVG 139
Query: 134 SKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTT 193
++ +P+ FF +L+ LH++PS K+ ++IL DVSGI+KP R+TLLLGPP +GKTT
Sbjct: 140 NRGVPTLVNFFVNKAIWILSALHLMPSGKRPISILHDVSGIIKPCRMTLLLGPPGAGKTT 199
Query: 194 LLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARC 253
LLLALAGKLD +LKV+G VTYNGH M EFVP+RT+AYISQHD HIGEMTVRETLAF++RC
Sbjct: 200 LLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVRETLAFSSRC 259
Query: 254 QGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICAD 313
QGVGTRYEMLTELSRREK A IKPDPD+DV+MKA + EG+E+ V+TDY LK+LGLDICAD
Sbjct: 260 QGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQES-VVTDYILKILGLDICAD 318
Query: 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHIN 373
TMVGD M RG+SGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIVN +Q++HI
Sbjct: 319 TMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQSVHIL 378
Query: 374 SGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
GTA+I+LLQPAPETY+LFDDI+LLSDGQIVYQGPRE VLEFFESMGFKCP+RKGVADFL
Sbjct: 379 GGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGVADFL 438
Query: 434 QEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALT 493
QEVTS+KDQ+QYW ++ PYRFV V EF AF+SFHVG KL +EL TPFD+S++H AALT
Sbjct: 439 QEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHPAALT 498
Query: 494 TKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTD 553
T YG+ K ELLKAC RE LLMKRNSFVYIFK++Q+ + L+ MT+FFRTK+ ++ + D
Sbjct: 499 TSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRNGLED 558
Query: 554 GGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISF 613
I+ GA+F +V LF+GFAE++M+I KLPVFYKQRD F+PPWAYA+P+WILKIPISF
Sbjct: 559 ATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKIPISF 618
Query: 614 LEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSF 673
+E VW+ ++YYVIG+DPN R F+ YLLL+ +Q+ SGLFR L A+GR++VVA TFG+F
Sbjct: 619 VECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFGAF 678
Query: 674 AVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLG 733
A LVLL LGGF+++RE++KK+W W YWSSP+MYAQN I NEFLGHSW K + ++LG
Sbjct: 679 AQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQTLG 738
Query: 734 VQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQ 793
+ L +R F WYW+G+GAL G+++L N F L L +L+ K + ++EE +++
Sbjct: 739 ERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQEKE 798
Query: 794 DNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSV 853
NR G V+L+ G + S E +K+GMVLPF P S+TFD V YSV
Sbjct: 799 ANRTGANVELATRGSAAT------SDGGSVEIRKDGNRKKGMVLPFTPLSITFDNVKYSV 852
Query: 854 DMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG 913
DMPQ+MK +GV EDKL+LL GVSGAFRPGVLTALMGVSG GKTTLMDVLAGRKTGGYI G
Sbjct: 853 DMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLMDVLAGRKTGGYIEG 912
Query: 914 DIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEE 973
DIRISGYPK QETFARISGYCEQNDIHSP VTVYESL YSAWLRLP EV+ + RKMF++E
Sbjct: 913 DIRISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPAEVDEKQRKMFVDE 972
Query: 974 VMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1033
VM+LVEL LR SLVGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI
Sbjct: 973 VMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1032
Query: 1034 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFE 1093
VMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG E+YVGPLG S HLI YFE
Sbjct: 1033 VMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRQSSHLIKYFE 1092
Query: 1094 AIPGVEKIKDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRRNKLLIEDLSKPAPG 1153
+I GV+KIK+ YNPATWMLEV+ SQE LG++F ++Y+ S+LY+RNK LI++LS P PG
Sbjct: 1093 SIDGVKKIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDLYKRNKDLIKELSTPPPG 1152
Query: 1154 SKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGGK 1213
SKDL FATQ+SQS Q +ACLWKQH SYWRNP+YTA R FT IAL+ G+IFWDLG K
Sbjct: 1153 SKDLFFATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFTVVIALIFGTIFWDLGKK 1212
Query: 1214 TEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIM 1273
DL NAMGSM+ A++F+G + +VQP+V VER VFYRE AAGM+S +P+A AQ++
Sbjct: 1213 RSTSLDLINAMGSMYAAVLFIGIQNAQTVQPIVDVERTVFYREKAAGMYSALPYAYAQVL 1272
Query: 1274 IEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPTHHI 1333
IE+P++ VQ+L+Y +VY+M+ FDWTAAKF WY+F+M+F L+FT YGM AVA+TP I
Sbjct: 1273 IEVPHILVQTLLYGLLVYSMIGFDWTAAKFLWYMFFMFFTFLYFTYYGMMAVAMTPNSDI 1332
Query: 1334 ASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIASQYGDVEDKI-ET 1392
A+IV+ F+ +W +F+GFIIPRPRIPIWWRWYYWA P+AWTLYGL+ SQ+G+ D + +
Sbjct: 1333 AAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQFGEYTDTMSDV 1392
Query: 1393 GETVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQRR 1441
ETVK FLR + GF+H FL V +++ F LF +F IK NFQRR
Sbjct: 1393 DETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1947 bits (5045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 940/1420 (66%), Positives = 1121/1420 (78%), Gaps = 14/1420 (0%)
Query: 35 EEDDEEALKWAAIEKLPTYNRLKKGLL-----------TTSQGEAFEVDVSNLGLQERQR 83
EEDDEEAL+WAA++KLPTY+R++ +L G VDV +LG ER+
Sbjct: 50 EEDDEEALRWAALQKLPTYDRVRAAILPMVEGEGGEAGGGGGGRRVVVDVHSLGPHERRA 109
Query: 84 LINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKF 143
L+ +LV V + DNE+FLLKLK RI RVGI +PT+EVRFEHL +EAE + + +P+
Sbjct: 110 LLERLVRVADDDNERFLLKLKERISRVGIDMPTIEVRFEHLEVEAEVRVGNSGIPTVLNS 169
Query: 144 FTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD 203
T E+ N L ILP+ K+ L IL D+SGI+KP R+TLLLGPP SGKTT LLALAG+L
Sbjct: 170 ITNKIEEAANALGILPTRKQTLRILHDISGIIKPKRMTLLLGPPGSGKTTFLLALAGRLK 229
Query: 204 PSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEML 263
LK SG+VTYNGH M++FVP+RTAAYISQHD HIGEMTVRETL+F+ARCQGVG+R++ML
Sbjct: 230 -DLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFDML 288
Query: 264 TELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323
TEL+RREKAA IKPD D+D FMKA++ EG+E+N+ITDY LK+LGL+ICADTMVGD+M RG
Sbjct: 289 TELTRREKAANIKPDADVDAFMKASAMEGQESNLITDYILKILGLEICADTMVGDDMVRG 348
Query: 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQ 383
+SGGQ+KRVTTGEM+VGPA A FMDEISTGLDSSTTFQIV +Q IHI GTAVISLLQ
Sbjct: 349 ISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQTIHILGGTAVISLLQ 408
Query: 384 PAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQE 443
PAPETY+LFDDIILLSDG IVYQGPRE VLEFFE MGFKCP+RKGVADFLQEVTS+KDQ+
Sbjct: 409 PAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGVADFLQEVTSRKDQK 468
Query: 444 QYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRE 503
QYWA D+PYR+V ++EF +AFQSFH G+ +++EL TPFDKSKSH AALTT YGV E
Sbjct: 469 QYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHPAALTTSRYGVSAME 528
Query: 504 LLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFF 563
LLKA RELLL+KRNSFVYIF+ IQ+ +++ + MT+FFRTKMH+DSV DG I+ GALFF
Sbjct: 529 LLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRDSVADGVIFMGALFF 588
Query: 564 TIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLS 623
++M + +G +E+ +TI KLPVF+KQRD FFP W Y IPSWILK P+SF+E + F+S
Sbjct: 589 AVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFIEVGGFCFMS 648
Query: 624 YYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGG 683
YYVIG+DPN GRFFKQYLL+LA +QM + LFRF+G RNL+VA FGSF +L+ + LGG
Sbjct: 649 YYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFMLLIFMVLGG 708
Query: 684 FVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKF--TPTSTESLGVQVLESRE 741
F+L+R++V KWW W YW SP+MYAQN + NEFLGHSW K S E+LGVQ L SR
Sbjct: 709 FILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALMSRG 768
Query: 742 FFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGTV 801
F A WYW+G GAL GFI+L N+ F LALT+L K + I+EE ++Q N G +
Sbjct: 769 IFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEEELKEKQANINGNVL 828
Query: 802 QLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKL 861
+ S N ++ + A+ S P +RGMVLPF P SLTF+++ YSVDMPQ+MK
Sbjct: 829 DVDTMASSNNLAIVGSTGTGSEIADNSQPTQRGMVLPFTPLSLTFEDIKYSVDMPQEMKA 888
Query: 862 QGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921
G+ ED+L LL GVSG FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYP
Sbjct: 889 HGIVEDRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISISGYP 948
Query: 922 KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
KKQETFAR+SGYCEQNDIHSP VTV ESL +SAWLRLP +V+S TRKMFIEEVMELVELK
Sbjct: 949 KKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELK 1008
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
PLR +LVGLPGVNGLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT
Sbjct: 1009 PLRDALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1068
Query: 1042 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIPGVEKI 1101
V+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG E+YVGPLGHHS LI YFE I GV KI
Sbjct: 1069 VNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFEGIQGVSKI 1128
Query: 1102 KDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRRNKLLIEDLSKPAPGSKDLHFAT 1161
DGYNPATWMLEV+ SQE AL VDFCDIY++SEL++RNK LI++LS P PGS +L+F T
Sbjct: 1129 TDGYNPATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPT 1188
Query: 1162 QYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGGKTEKRQDLS 1221
QYSQS Q +ACLWKQH SYWRNP Y A+R FT IAL+ G+IFWDLGGK + QDL
Sbjct: 1189 QYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGTIFWDLGGKMGQSQDLF 1248
Query: 1222 NAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFV 1281
NAMGSM+ A++F+G SVQPVV VER VFYRE AAGM+S +P+A Q+ IE PY V
Sbjct: 1249 NAMGSMYAAVLFIGVLNGQSVQPVVSVERTVFYRERAAGMYSALPYAFGQVAIEFPYTLV 1308
Query: 1282 QSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPTHHIASIVSTLF 1341
QS+IYS IVY+M+ F WT AKFFWY+F+M+F LL+FT YGM AV +TP++H+ASIVS+ F
Sbjct: 1309 QSVIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYGMMAVGLTPSYHVASIVSSAF 1368
Query: 1342 FGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIASQYGDVEDKIETGETVKHFLR 1401
+ +W LF+GF+I RP P+WWRWY W P+AWTLYGLI SQYGD+ ++ G V F+
Sbjct: 1369 YAIWNLFTGFVISRPATPVWWRWYCWICPVAWTLYGLIVSQYGDIVTPMDDGIPVNVFVE 1428
Query: 1402 DYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQRR 1441
+Y+ FKHS+LG VA V++AF LF LF I + NFQ+R
Sbjct: 1429 NYFDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1468
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1441 | ||||||
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.988 | 0.997 | 0.725 | 0.0 | |
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.987 | 0.997 | 0.708 | 0.0 | |
| 255572799 | 1443 | ATP-binding cassette transporter, putati | 0.977 | 0.976 | 0.712 | 0.0 | |
| 75326590 | 1434 | RecName: Full=Pleiotropic drug resistanc | 0.977 | 0.982 | 0.706 | 0.0 | |
| 297743343 | 1642 | unnamed protein product [Vitis vinifera] | 0.977 | 0.858 | 0.713 | 0.0 | |
| 20522008 | 1434 | pleiotropic drug resistance like protein | 0.977 | 0.982 | 0.706 | 0.0 | |
| 359482642 | 1429 | PREDICTED: pleiotropic drug resistance p | 0.988 | 0.997 | 0.712 | 0.0 | |
| 255572795 | 1437 | ATP-binding cassette transporter, putati | 0.995 | 0.997 | 0.708 | 0.0 | |
| 356519409 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.986 | 0.996 | 0.700 | 0.0 | |
| 357455075 | 1427 | Pleiotropic drug resistance protein [Med | 0.987 | 0.997 | 0.695 | 0.0 |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2179 bits (5647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1046/1442 (72%), Positives = 1206/1442 (83%), Gaps = 17/1442 (1%)
Query: 3 ESHEIYLASTTSHRSHSR-WRTGSVGAFSMSSR--EEDDEEALKWAAIEKLPTYNRLKKG 59
E E+Y+A + R S WR+ ++ FS SSR E+DDEEALKWAAIE+LPTY+RLKKG
Sbjct: 2 EGTELYIAGGSLRRGESSIWRSNAMEGFSKSSRGDEDDDEEALKWAAIERLPTYDRLKKG 61
Query: 60 LLTTSQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEV 119
LLTTS+GEA E+DV NLG E++ L+++LV V E DNE FLLKLKNRI+RVGI LP +EV
Sbjct: 62 LLTTSKGEANEIDVKNLGFHEKRTLLDRLVKVAEEDNELFLLKLKNRIDRVGIELPMIEV 121
Query: 120 RFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGR 179
RFEHL +E EA + S+ALP+F F I E LN+LHILPS KK L+IL+DVSGI+KP R
Sbjct: 122 RFEHLNVETEAHVGSRALPTFFNFSIDIVEGFLNFLHILPSGKKSLSILQDVSGIIKPKR 181
Query: 180 LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIG 239
+TLLLGPPSSGKTTLLLALAGKLDP LK SGRVTYNGH M+EFVP+RTAAYISQHD HIG
Sbjct: 182 MTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMNEFVPQRTAAYISQHDTHIG 241
Query: 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVIT 299
EMTVRETLAFAARCQGVG RYEM++EL RREKA+ IKPDPDIDVFMKA +TEG+EANV+T
Sbjct: 242 EMTVRETLAFAARCQGVGHRYEMISELLRREKASNIKPDPDIDVFMKAMATEGQEANVVT 301
Query: 300 DYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 359
DY LK+LGL++CAD MVG+EM RGVSGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 302 DYILKILGLEVCADIMVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSSTT 361
Query: 360 FQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 419
+QIVN KQ IHI +GTAVISLLQP PETYNLFDDIILLSDGQIVYQGPRE VLEFFE M
Sbjct: 362 YQIVNSIKQYIHILNGTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFEYM 421
Query: 420 GFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQ 479
GFKCP+RKGVADFLQEVTS+KDQ QYWA KD+PY FV V+EF AFQSF VG++L EL
Sbjct: 422 GFKCPERKGVADFLQEVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAELS 481
Query: 480 TPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMT 539
TPFDKSKSH AALTTK YGVGK ELLKAC SRE+LLMKRNSFVYIFKL Q+ + +V MT
Sbjct: 482 TPFDKSKSHPAALTTKKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVAMT 541
Query: 540 LFFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWA 599
LF RT+MH+DSVT+GGIY GALFF++V +F+G +EIS+TI KLPVFYKQR F+PPWA
Sbjct: 542 LFLRTEMHRDSVTNGGIYVGALFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPPWA 601
Query: 600 YAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGA 659
+++P WI KIPI+ ++ A+WVFL+YYVIG+DPN GRFFKQYLLL +QM SGLFRF+ A
Sbjct: 602 FSLPPWITKIPITLVQVAIWVFLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFIAA 661
Query: 660 IGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGH 719
GRN++VA TFGSFA+L L ALGGF+LSR+ +KKWW W YW SP+MY QN I+ NEFLG+
Sbjct: 662 AGRNMIVANTFGSFALLALFALGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFLGN 721
Query: 720 SWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEK 779
SW K P +TE+LG+QVLESR FF HAYWYW+G+GAL GF LL N F LALTFL +K
Sbjct: 722 SWNKVLPDTTETLGIQVLESRGFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLGPLQK 781
Query: 780 PRAVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPF 839
P+AVI+E+ S+ + G +QLS S + E +H K++GMVLPF
Sbjct: 782 PQAVISEDSASN-TSGKTGEVIQLS-------------SVRTELIVEENHQKQKGMVLPF 827
Query: 840 EPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 899
EP+S+TF+++ YSVDMPQ+MK QG ED+L LL GVSGAFRPGVLTALMGVSGAGKTTLM
Sbjct: 828 EPHSITFNDIRYSVDMPQEMKRQGATEDRLELLRGVSGAFRPGVLTALMGVSGAGKTTLM 887
Query: 900 DVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP 959
DVLAGRKTGGYI GDIRISG+PKKQETFARISGYCEQNDIHSP VTVYESL YS+WLRLP
Sbjct: 888 DVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPHVTVYESLLYSSWLRLP 947
Query: 960 PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1019
PEVNSETRKMFIEEVMELVEL PLRQ+LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 948 PEVNSETRKMFIEEVMELVELTPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1007
Query: 1020 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG+E+YVG
Sbjct: 1008 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVG 1067
Query: 1080 PLGHHSCHLISYFEAIPGVEKIKDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRR 1139
PLG HSC LI YFEAI GV IKDGYNPATWMLEVS+S+QE+ LG+DF IYK SELYRR
Sbjct: 1068 PLGRHSCQLIKYFEAIEGVPDIKDGYNPATWMLEVSSSAQEMVLGLDFAAIYKNSELYRR 1127
Query: 1140 NKLLIEDLSKPAPGSKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFI 1199
NK LIE+LS P GS DL+F TQYSQS F+Q MACLWKQHWSYWRNP YTAVRFLFT I
Sbjct: 1128 NKALIEELSTPPLGSNDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTVI 1187
Query: 1200 ALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAA 1259
AL+ G++FWDLG KT KRQDL NAMGSM+ A++FLG + SVQPVV VER VFYRE AA
Sbjct: 1188 ALMFGTMFWDLGSKTTKRQDLFNAMGSMYAAIVFLGIQNASSVQPVVAVERTVFYRERAA 1247
Query: 1260 GMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTL 1319
GM+S +P+A AQ++IE+PY+F+Q+ +Y IVYAM+ F+W+AAKFFWY+F+MYF LLF+T
Sbjct: 1248 GMYSPLPYAFAQVVIELPYIFLQAAVYGLIVYAMIGFEWSAAKFFWYLFFMYFTLLFYTY 1307
Query: 1320 YGMTAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLI 1379
YGM AVAVTP +ASIVS+ F+ +W LFSGFIIPRPRIP+WWRWY W P+A+TLYGL+
Sbjct: 1308 YGMMAVAVTPNQQVASIVSSAFYSIWNLFSGFIIPRPRIPVWWRWYAWTCPVAYTLYGLV 1367
Query: 1380 ASQYGDVEDKIETGETVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQ 1439
+SQ+GD++ +E+GETV+ F+R Y+ FKH LGAVA + FA LF F IK FNFQ
Sbjct: 1368 SSQFGDIKHTLESGETVEDFVRSYFDFKHELLGAVAAAVFGFATLFAFTFAFSIKFFNFQ 1427
Query: 1440 RR 1441
RR
Sbjct: 1428 RR 1429
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2159 bits (5593), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1021/1442 (70%), Positives = 1203/1442 (83%), Gaps = 19/1442 (1%)
Query: 3 ESHEIYLASTT-SHRSHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLL 61
E +IY AS + RS + WR V AFS SSREEDDEEALKWAA+EKLPTYNRL+KGLL
Sbjct: 2 EGSDIYRASNSLRSRSSTVWRNSGVEAFSRSSREEDDEEALKWAALEKLPTYNRLRKGLL 61
Query: 62 TTSQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRF 121
T S G A E+DVS+LG+QERQ+L+ +LV V E DNE+FLLKLK RI+RVG+ +PT+EVR+
Sbjct: 62 TASHGVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEVRY 121
Query: 122 EHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLT 181
EHL IEAEAF+ S+ALPSF T + E N LH+ S KKH+TILKDVSGI+KP R+T
Sbjct: 122 EHLNIEAEAFVGSRALPSFINSVTNVVEGFFNLLHVSTSKKKHVTILKDVSGIIKPRRMT 181
Query: 182 LLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEM 241
LLLGPPSSGKTTLLLAL+GKLD +LKVSGRVTYNGH ++EFVP+RTAAYISQHD HIGEM
Sbjct: 182 LLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIGEM 241
Query: 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDY 301
TVRETLAF+ARCQGVG+RY+ML+ELSRREKAA IKPDPD+DV+MKA +TEG+E+N++TDY
Sbjct: 242 TVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESNIVTDY 301
Query: 302 YLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 361
LK+LGLDICADTMVGDEM RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQ
Sbjct: 302 TLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQ 361
Query: 362 IVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGF 421
IV+ + +HI +GTAVISLLQPAPETY+LFDDIIL+SDGQ+VY GPRE VL+FFESMGF
Sbjct: 362 IVSSLRHYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMGF 421
Query: 422 KCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTP 481
+CP+RKGVADFLQEVTSKKDQ QYW +D+PYRFV V +F AFQSFH+G KL +EL P
Sbjct: 422 RCPERKGVADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEELTVP 481
Query: 482 FDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLF 541
FD++KSH AALTTK YG+ K+ELLKA SRE LLMKRNSFVY+FKL Q+ + LV MTLF
Sbjct: 482 FDRTKSHPAALTTKKYGINKKELLKANFSREYLLMKRNSFVYLFKLSQLFIMALVAMTLF 541
Query: 542 FRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYA 601
RT+MH +++ D G+YAGA+FF ++ +F+G AEISMTI KLPVFYKQR+ F+P WAYA
Sbjct: 542 LRTEMHHENMDDAGVYAGAVFFMLITVMFNGLAEISMTIAKLPVFYKQRNLLFYPSWAYA 601
Query: 602 IPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIG 661
IPSWILKIP++ +E AVWVFL+YYVIG+DPN GRFFKQYL+LL +QM SGLFR + A+G
Sbjct: 602 IPSWILKIPVTIVEVAVWVFLTYYVIGFDPNVGRFFKQYLVLLIVSQMASGLFRTIAALG 661
Query: 662 RNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSW 721
RN++VA TFG+FA++ ++ALGGF+LS+ ++K WW W YW SP+MY QN ++ NEFL +SW
Sbjct: 662 RNMIVANTFGAFAIITVVALGGFILSKRDIKSWWIWGYWISPLMYGQNALMVNEFLSNSW 721
Query: 722 KKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPR 781
+T +LGV+ LESR FF +YWYWLGLGAL GF+ L NV F LAL FL F+KP+
Sbjct: 722 HN----ATHNLGVEYLESRAFFTDSYWYWLGLGALVGFVFLFNVMFGLALEFLGPFDKPQ 777
Query: 782 AVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEP 841
A ITE+ S+E GT L++ G ++ R S E+SH KK+GMVLPFEP
Sbjct: 778 ATITEDESSNE------GT--LADIELPGIESSGRGDSL----VESSHGKKKGMVLPFEP 825
Query: 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 901
+S+TFDEVVYSVDMPQ+MK QGV ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDV
Sbjct: 826 HSITFDEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDV 885
Query: 902 LAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPE 961
LAGRKTGGYI G I+ISGYPKKQETFARISGYCEQNDIHSP VTVYESL YSAWLRLP
Sbjct: 886 LAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPSS 945
Query: 962 VNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021
V+S+TRKMFIEEVMELVEL P+R SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDE
Sbjct: 946 VDSKTRKMFIEEVMELVELNPVRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1005
Query: 1022 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081
PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+E+YVGPL
Sbjct: 1006 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1065
Query: 1082 GHHSCHLISYFEAIPGVEKIKDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRRNK 1141
G HS HLI YFE+I GV KIKDGYNPATWMLEV+A++QE++LGVDF D+YK S+LYRRNK
Sbjct: 1066 GRHSSHLIKYFESIEGVSKIKDGYNPATWMLEVTATAQELSLGVDFTDLYKNSDLYRRNK 1125
Query: 1142 LLIEDLSKPAPGSKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIAL 1201
LI++L +PAPGSKDLHF TQYSQS Q ACLWKQ WSYWRNP YTAVRF FT FIAL
Sbjct: 1126 QLIQELGQPAPGSKDLHFPTQYSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFTTFIAL 1185
Query: 1202 LLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGM 1261
+ G+IFWDLGGK R DL NA+GSM+TA++FLG + SVQPVV +ER VFYRE AAGM
Sbjct: 1186 MFGTIFWDLGGKHSTRGDLLNAIGSMYTAVLFLGVQNASSVQPVVAIERTVFYREKAAGM 1245
Query: 1262 FSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYG 1321
+S +P+A AQI++E+PYVFVQ++ Y IVYAM+ F+WTA KFFWY+F+MYF LL++T YG
Sbjct: 1246 YSALPYAFAQILVELPYVFVQAVTYGVIVYAMIGFEWTAEKFFWYLFFMYFTLLYYTFYG 1305
Query: 1322 MTAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIAS 1381
M V +TP HHIASIV+ F+ +W LFSGF++ RP IP+WWRWYYWA P+AWT+YGL+AS
Sbjct: 1306 MMTVGLTPNHHIASIVAAAFYAVWNLFSGFVVTRPSIPVWWRWYYWACPVAWTIYGLVAS 1365
Query: 1382 QYGDVEDKI--ETGETVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQ 1439
Q+GD+ + + E + VK FL DYYG KH F+G A V+ A LF ++F + IK FNFQ
Sbjct: 1366 QFGDLTEPMTSEGQKIVKDFLEDYYGIKHDFIGVSAVVVAGIAVLFALIFAVSIKTFNFQ 1425
Query: 1440 RR 1441
+R
Sbjct: 1426 KR 1427
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572799|ref|XP_002527332.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223533332|gb|EEF35084.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2141 bits (5548), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1009/1417 (71%), Positives = 1190/1417 (83%), Gaps = 8/1417 (0%)
Query: 29 FSMSSREEDDEEALKWAAIEKLPTYNRLKKGLL-TTSQGEAFEVDVSNLGLQERQRLINK 87
FSMSSREEDDEEALKWAA+E+LPTY+RL+KG+L + S+ A E+DV +LG ER+ L+ +
Sbjct: 31 FSMSSREEDDEEALKWAALERLPTYDRLRKGILFSASRNGANEIDVGSLGFHERKLLLER 90
Query: 88 LVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTI 147
L+ V E DNE+FLLKLKNRI+RVGI LPT+EVRFE+L IEAEAF+ S+ALP+F F +
Sbjct: 91 LLRVVEEDNEEFLLKLKNRIDRVGIELPTIEVRFENLNIEAEAFVGSRALPTFVNFSINL 150
Query: 148 FEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLK 207
FE LN LHILPS KK LTILKDVSG++KP R+TLLLGPPSSGKTTLLLALAGKLDP+LK
Sbjct: 151 FEGFLNSLHILPSRKKQLTILKDVSGVIKPSRMTLLLGPPSSGKTTLLLALAGKLDPNLK 210
Query: 208 VSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELS 267
SG VTYNGH M+EF+P+ TAAYISQHD HIGEMTVRETL+F+ RCQGVGTR +ML ELS
Sbjct: 211 FSGNVTYNGHGMNEFIPQSTAAYISQHDLHIGEMTVRETLSFSVRCQGVGTRNDMLVELS 270
Query: 268 RREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGG 327
RREKAA IKPDPDIDVFMKA +TEG+E NV+TDY LK+LGL++CADT+VGDEM RG+SGG
Sbjct: 271 RREKAANIKPDPDIDVFMKAVATEGQETNVVTDYVLKILGLEVCADTLVGDEMLRGISGG 330
Query: 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPE 387
Q+KRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN KQ IHI GTAVISLLQPAPE
Sbjct: 331 QRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLKQTIHILDGTAVISLLQPAPE 390
Query: 388 TYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWA 447
TY+LFDDIILLSDGQIVYQGPRE VLEFFE MGFKCP+RKGVADFLQEVTSK DQ+QYW
Sbjct: 391 TYDLFDDIILLSDGQIVYQGPREHVLEFFEYMGFKCPERKGVADFLQEVTSKNDQKQYWV 450
Query: 448 HKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKA 507
KD+PY FV VQEF AFQS+ VGQ + EL TPFDKSKSH AAL + YGV K ELLKA
Sbjct: 451 QKDQPYSFVTVQEFSEAFQSYDVGQIIGQELSTPFDKSKSHPAALAARKYGVDKMELLKA 510
Query: 508 CTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIVM 567
C +RE LLMKRNSFVYIFKL Q+ + ++ MTLF RT+MH++ +TD G+Y GALFF+++
Sbjct: 511 CFAREYLLMKRNSFVYIFKLTQLVVMAIISMTLFLRTEMHREDLTDAGVYLGALFFSLIA 570
Query: 568 PLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVI 627
+F+G +E+SMTI KLPVFYKQRD +F+PPWAYA+P+WILKIPI+F E VWVF++YYVI
Sbjct: 571 IMFNGMSELSMTIAKLPVFYKQRDLQFYPPWAYALPTWILKIPITFFEVGVWVFITYYVI 630
Query: 628 GYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLS 687
G+DPN R FKQY LLL NQM SGLFRF+ A+GRN++VA TFGSFA+L + ALGG VLS
Sbjct: 631 GFDPNVERLFKQYFLLLIVNQMASGLFRFIAAVGRNMIVANTFGSFALLTVFALGGIVLS 690
Query: 688 REEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKF--TPTSTESLGVQVLESREFFAH 745
R+++KKWW W YW SP+MY QN ++ANEFLG SW TST+SLGVQ ++SR FF H
Sbjct: 691 RDDIKKWWTWGYWISPMMYGQNALVANEFLGESWNHVPANSTSTDSLGVQFIKSRGFFPH 750
Query: 746 AYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGTVQLSN 805
AYWYW+G+GAL GF +L N+ F LALT LN +EKP AVI++E E+ +R GG +QLS
Sbjct: 751 AYWYWIGIGALTGFTILFNLCFTLALTHLNPYEKPHAVISDE---PERSDRTGGAIQLSQ 807
Query: 806 CGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVP 865
G S E +T+ EA+ KK+GMVLPFEP+S+TF++V+YSVDMPQ+MK QG+
Sbjct: 808 NGSSHRTITENGVGIRMTD-EANQNKKKGMVLPFEPHSITFNDVMYSVDMPQEMKSQGIA 866
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE 925
+DKLVLL GVSGAF+PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GDIRISGYPKKQ+
Sbjct: 867 DDKLVLLKGVSGAFKPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQD 926
Query: 926 TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
TFARISGYCEQNDIHSP VTVYESL YSAWLRL PEV+ ETRKMF+ EVMELVEL PLRQ
Sbjct: 927 TFARISGYCEQNDIHSPHVTVYESLIYSAWLRLAPEVDPETRKMFVNEVMELVELNPLRQ 986
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
+LVGLPGVNGLSTEQRKRLTI+VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG
Sbjct: 987 ALVGLPGVNGLSTEQRKRLTISVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1046
Query: 1046 RTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIPGVEKIKDGY 1105
RTVVCTIHQPSID+FEAFDELFLMKRGG E+YVGPLG HSCH+I YFE I G K+KDGY
Sbjct: 1047 RTVVCTIHQPSIDLFEAFDELFLMKRGGEEIYVGPLGRHSCHMIDYFEVIEGASKVKDGY 1106
Query: 1106 NPATWMLEVSASSQEVALGVDFCDIYKRSELYRRNKLLIEDLSKPAPGSKDLHFATQYSQ 1165
NPATWMLEV++S+QE++LGVDF IYK SELYRRNK +I++LS PGSKDL+F TQYSQ
Sbjct: 1107 NPATWMLEVTSSAQELSLGVDFATIYKNSELYRRNKAIIKELSTSVPGSKDLYFPTQYSQ 1166
Query: 1166 SAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGGKTEKRQDLSNAMG 1225
S +Q +ACLWKQ SYWRNP YTAVRFLFT FIAL+ G++FWDLG KT +QD+ N+ G
Sbjct: 1167 SFLTQCIACLWKQRLSYWRNPPYTAVRFLFTTFIALMFGTMFWDLGSKTRTQQDIFNSAG 1226
Query: 1226 SMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLI 1285
SM+ A++FLG + SVQPVV +ER VFYRE AAGM+S +P+A AQ+++EIPY+F Q+++
Sbjct: 1227 SMYAAVVFLGTQNAASVQPVVAIERTVFYRERAAGMYSALPYAYAQVLVEIPYIFAQAVV 1286
Query: 1286 YSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPTHHIASIVSTLFFGLW 1345
Y + Y+M+ F+WTAAKFFWYIF+MYF L++FT YGM AVAVTP HHIAS+VS+ F+G+W
Sbjct: 1287 YGLLTYSMIGFEWTAAKFFWYIFFMYFTLMYFTYYGMMAVAVTPNHHIASVVSSAFYGIW 1346
Query: 1346 LLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIASQYGDVEDKIETG-ETVKHFLRDYY 1404
LFSGFI+PR R+P+WWRWYYW P++WTLYGLI SQ+ D++D E G +TV+ F+R+YY
Sbjct: 1347 NLFSGFIVPRTRMPVWWRWYYWVCPVSWTLYGLIGSQFSDIKDAFEGGSQTVEDFVREYY 1406
Query: 1405 GFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQRR 1441
G +H FLG VA V++ LF +F + IK FNFQRR
Sbjct: 1407 GIRHDFLGVVAAVIVGTTVLFAFIFAVSIKSFNFQRR 1443
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75326590|sp|Q76CU2.1|PDR1_TOBAC RecName: Full=Pleiotropic drug resistance protein 1; AltName: Full=NtPDR1 gi|41052472|dbj|BAD07483.1| PDR-type ABC transporter 1 [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 2139 bits (5542), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1007/1425 (70%), Positives = 1188/1425 (83%), Gaps = 16/1425 (1%)
Query: 17 SHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSQGEAFEVDVSNL 76
S+S WR V FS SSR+EDDEEALKWAA+EKLPT++RL+KGLL SQG A EVD+++L
Sbjct: 26 SNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLPTFDRLRKGLLFGSQGAAAEVDINDL 85
Query: 77 GLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKA 136
G QER+ L+ +LV V + DNEKFLLKLKNRI+RVGI LPT+EVR+EHL I+A+A++ S++
Sbjct: 86 GFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNIDADAYVGSRS 145
Query: 137 LPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLL 196
LP+F F T E LLN LHIL S K+ LTILKD+SGI+KP R+TLLLGPPSSGKTTLLL
Sbjct: 146 LPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGPPSSGKTTLLL 205
Query: 197 ALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGV 256
ALAGKLDP+LKV+G+V+YNGH + EFVP+RTAAYISQHD HIGEMTVRETL F+ARCQGV
Sbjct: 206 ALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGV 265
Query: 257 GTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316
G+R+EML ELSRREKAA IKPD DID++MKAA+TEG+EANV+TDY LK+LGLDICADTMV
Sbjct: 266 GSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDICADTMV 325
Query: 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGT 376
GD+M RG+SGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN +Q++ I GT
Sbjct: 326 GDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILKGT 385
Query: 377 AVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
AVISLLQPAPETYNLFDDIILLSDG IVYQGPR+ VLEFFESMGFKCP+RKGVADFLQEV
Sbjct: 386 AVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVADFLQEV 445
Query: 437 TSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKV 496
TSKKDQ+QYW+ ++ PYRF+ +EF A+QSFHVG+KL DEL TPFDK+K H AALT +
Sbjct: 446 TSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAALTNEK 505
Query: 497 YGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGI 556
YG+GK+ELLK CT RELLLMKRNSFVY+FK Q+ + L+ MTLFFRT+M +D+ DGGI
Sbjct: 506 YGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTTDDGGI 565
Query: 557 YAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEP 616
YAGALFF ++M +F+G +E++MTI KLPVFYKQRD FFP WAYAIPSWILKIP++ +E
Sbjct: 566 YAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPVTLVEV 625
Query: 617 AVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVL 676
+WV L+YYVIG+DPN RF KQ+LLL+ NQM SG+FRF+GA+GR + VA TFGSFA+L
Sbjct: 626 GLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFGSFALL 685
Query: 677 VLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQV 736
+ ALGGFVLSR++VK WW W YW SP+MY+ N IL NEF G W P E+LG V
Sbjct: 686 LQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGSTV 745
Query: 737 LESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNR 796
++SR FF AYWYW+G+GAL GF ++ N ++LAL +LN F+KP+AV+ E+ E+ E
Sbjct: 746 VKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPEDGENAEN--- 802
Query: 797 IGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMP 856
GE + + S++E S K+GMVLPFEP+S+TFD+VVYSVDMP
Sbjct: 803 ----------GEVSSQITSTDGGDSISE---SQNNKKGMVLPFEPHSITFDDVVYSVDMP 849
Query: 857 QQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIR 916
Q+MK QG ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I+
Sbjct: 850 QEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIK 909
Query: 917 ISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVME 976
ISGYPKKQETFARISGYCEQNDIHSP+VTVYESL YSAWLRLP +V+ +TRKMF++EVME
Sbjct: 910 ISGYPKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFVDEVME 969
Query: 977 LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
LVEL PLR +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR
Sbjct: 970 LVELGPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1029
Query: 1037 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIP 1096
TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+E+YVGPLG HSCHLI YFE+ P
Sbjct: 1030 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNP 1089
Query: 1097 GVEKIKDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRRNKLLIEDLSKPAPGSKD 1156
GV KIK+GYNPATWMLEV+AS+QE+ LG+DF ++YK S+LYRRNK LI +L P PGSKD
Sbjct: 1090 GVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALISELGVPRPGSKD 1149
Query: 1157 LHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGGKTEK 1216
LHF TQYSQS ++Q +ACLWKQHWSYWRNPAYTAVRF+FT FIAL+ G++FWDLG K K
Sbjct: 1150 LHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSK 1209
Query: 1217 RQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEI 1276
QDL NAMGSM+ A++FLG + SVQPVV +ER VFYRE AAGM+S IP+A Q+ IEI
Sbjct: 1210 SQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEI 1269
Query: 1277 PYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPTHHIASI 1336
PY+FVQS+ Y IVYAM+ F+W KFFWY+F M+F LL+FT YGM VAVTP ++ASI
Sbjct: 1270 PYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASI 1329
Query: 1337 VSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIASQYGDVEDKIETGETV 1396
V+ F+G+W LFSGFIIPRPR+P+WWRWYYWANP+AWTLYGL+ASQ+GD++ K+ ETV
Sbjct: 1330 VAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQTKLSDNETV 1389
Query: 1397 KHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQRR 1441
+ FLR Y+GFKH FLG VA VL A+ +F F IK FNFQRR
Sbjct: 1390 EQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743343|emb|CBI36210.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2139 bits (5541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1025/1436 (71%), Positives = 1191/1436 (82%), Gaps = 27/1436 (1%)
Query: 10 ASTTSHRSHSR-WRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSQGEA 68
AS + R+ S WR+ FS SSR+EDDEEALKWAA+EKLPTYNRL++GLL S+GEA
Sbjct: 230 ASGSLRRNGSSIWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRRGLLMGSEGEA 289
Query: 69 FEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEA 128
E+D+ NLG QE++ L+ +LV V E DNEKFLLKLKNRI+RVGI +P +EVRFEHLTI+A
Sbjct: 290 SEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRFEHLTIDA 349
Query: 129 EAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPS 188
EAF+ S+ALPSF F E +LN + ILPS K+ TIL DVSGI+KP RLTLLLGPPS
Sbjct: 350 EAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLTLLLGPPS 409
Query: 189 SGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLA 248
SGKTTLLLALAGKLDP+LKV GRVTYNGH M+EFVP+RTAAYISQHD HIGEMTVRETLA
Sbjct: 410 SGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEMTVRETLA 469
Query: 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL 308
F+ARCQGVG RY+ML ELSRREKAA IKPDPD+DVFMKAA+TEG++ NV+TDY LK+LGL
Sbjct: 470 FSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLKILGL 529
Query: 309 DICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQ 368
DICADTMVGDEM RG+SGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI+N KQ
Sbjct: 530 DICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIINSLKQ 589
Query: 369 NIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKG 428
IHI +GTAVISLLQPAPETYNLFDDIILLSD QIVYQGPRE VLEFFES+GFKCP+RKG
Sbjct: 590 TIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGFKCPERKG 649
Query: 429 VADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSH 488
ADFLQEVTS+KDQ QYWA KD PY FV V+EF AFQSFH+G+K++DEL +PFD++KSH
Sbjct: 650 EADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASPFDRAKSH 709
Query: 489 RAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHK 548
AALTTK YGV K+ELL A SRE LLMKRNSFVYIFKL Q+ + ++ MTLF RT+M+K
Sbjct: 710 PAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLFLRTEMNK 769
Query: 549 DSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILK 608
+S DG IY GALFFT+VM +F+G AE++MTI KLPVFYKQRDF F+P WAYA+P+W+LK
Sbjct: 770 NSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYALPTWVLK 829
Query: 609 IPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAY 668
IPI+F+E AVWVF++YYVIG+DPN R F+QYLLLL NQM SGLFRF+ A GRN++VA
Sbjct: 830 IPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAGRNMIVAS 889
Query: 669 TFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTS 728
TFG+FAVL+L+ALGGF+LS + VKKWW W YWSSP+MYAQN I+ NEFLG SW K S
Sbjct: 890 TFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNVTNS 949
Query: 729 TESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEF 788
TESLG+ VL+SR FF A+WYW+G GAL GFI + N + L L +LN FEKP+AVITEE
Sbjct: 950 TESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQAVITEE- 1008
Query: 789 ESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTE--AEASHPKKRGMVLPFEPYSLTF 846
+DN + ++ + E AE +H KK+GMVLPF+P+S+TF
Sbjct: 1009 ----------------------SDNAKTATTEHMVEAIAEGNHNKKKGMVLPFQPHSITF 1046
Query: 847 DEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 906
D++ YSVDMP++MK QG ED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK
Sbjct: 1047 DDIRYSVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 1106
Query: 907 TGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSET 966
TGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VTV+ESL YSAWLRLP +VNSET
Sbjct: 1107 TGGYIEGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHESLLYSAWLRLPSDVNSET 1166
Query: 967 RKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026
RKMFIEEVMELVEL PLR +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 1167 RKMFIEEVMELVELTPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1226
Query: 1027 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSC 1086
DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG+E+YVGPLG HS
Sbjct: 1227 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLGRHSS 1286
Query: 1087 HLISYFEAIPGVEKIKDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRRNKLLIED 1146
HLI+YFE I GV KIKDGYNPATWMLEV+ +QE LGVDF +IYK S+LYRRNK LI++
Sbjct: 1287 HLINYFEGIEGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTEIYKNSDLYRRNKDLIKE 1346
Query: 1147 LSKPAPGSKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSI 1206
LS+PAPG+KDL+FATQYSQ F+QF+ACLWKQ WSYWRNP YTAVRFLFT FIAL+ G I
Sbjct: 1347 LSQPAPGTKDLYFATQYSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTTFIALMFGLI 1406
Query: 1207 FWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIP 1266
FWDLG + ++QDL NAMGSM+ A++FLG + SVQPV+ VER VFYRE AAGM+S +P
Sbjct: 1407 FWDLGTRRTRQQDLLNAMGSMYAAVLFLGVQNAQSVQPVIVVERTVFYRERAAGMYSALP 1466
Query: 1267 WALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVA 1326
+A Q ++EIPYVF Q+++Y IVY M+ F+WTA KFFWY+F+M+ LL+FT YGM AVA
Sbjct: 1467 YAFGQALVEIPYVFAQAVVYGVIVYGMIGFEWTATKFFWYLFFMFCTLLYFTFYGMMAVA 1526
Query: 1327 VTPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIASQYGDV 1386
TP HIASI++ F+ LW LFSGFI+PR RIP+WWRWY W P+AWTLYGL+ASQ+GD+
Sbjct: 1527 ATPNQHIASIIAATFYTLWNLFSGFIVPRNRIPVWWRWYCWICPVAWTLYGLVASQFGDI 1586
Query: 1387 EDK-IETGETVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQRR 1441
+ +E +TVK FL DY+GFKH FLG VA V++ F LF +F IK FNFQ+R
Sbjct: 1587 QSTLLENNQTVKQFLDDYFGFKHDFLGVVAAVVVGFVVLFLFIFAYAIKAFNFQKR 1642
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20522008|dbj|BAB92011.1| pleiotropic drug resistance like protein [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 2138 bits (5540), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1007/1425 (70%), Positives = 1188/1425 (83%), Gaps = 16/1425 (1%)
Query: 17 SHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSQGEAFEVDVSNL 76
S+S WR V FS SSR+EDDEEALKWAA+EKLPT++RL+KGLL SQG A EVD+++L
Sbjct: 26 SNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLPTFDRLRKGLLFGSQGAAAEVDINDL 85
Query: 77 GLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKA 136
G QER+ L+ +LV V + DNEKFLLKLKNRI+RVGI LPT+EVR+EHL I+A+A++ S++
Sbjct: 86 GFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNIDADAYVGSRS 145
Query: 137 LPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLL 196
LP+F F T E LLN LHIL S K+ LTILKD+SGI+KP R+TLLLGPPSSGKTTLLL
Sbjct: 146 LPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGPPSSGKTTLLL 205
Query: 197 ALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGV 256
ALAGKLDP+LKV+G+V+YNGH + EFVP+RTAAYISQHD HIGEMTVRETL F+ARCQGV
Sbjct: 206 ALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGV 265
Query: 257 GTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316
G+R+EML ELSRREKAA IKPD DID++MKAA+TEG+EANV+TDY LK+LGLDICADTMV
Sbjct: 266 GSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDICADTMV 325
Query: 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGT 376
GD+M RG+SGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN +Q++ I GT
Sbjct: 326 GDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILKGT 385
Query: 377 AVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
AVISLLQPAPETYNLFDDIILLSDG IVYQGPR+ VLEFFESMGFKCP+RKGVADFLQEV
Sbjct: 386 AVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVADFLQEV 445
Query: 437 TSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKV 496
TSKKDQ+QYW+ ++ PYRF+ +EF A+QSFHVG+KL DEL TPFDK+K H AALT +
Sbjct: 446 TSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAALTNEK 505
Query: 497 YGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGI 556
YG+GK+ELLK CT RELLLMKRNSFVY+FK Q+ + L+ MTLFFRT+M +D+ DGGI
Sbjct: 506 YGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTTDDGGI 565
Query: 557 YAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEP 616
YAGALFF ++M +F+G +E++MTI KLPVFYKQRD FFP WAYAIPSWILKIP++ +E
Sbjct: 566 YAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPVTLVEV 625
Query: 617 AVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVL 676
+WV L+YYVIG+DPN RF KQ+LLL+ NQM SG+FRF+GA+GR + VA TFGSFA+L
Sbjct: 626 GLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFGSFALL 685
Query: 677 VLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQV 736
+ ALGGFVLSR++VK WW W YW SP+MY+ N IL NEF G W P E+LG V
Sbjct: 686 LQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGSTV 745
Query: 737 LESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNR 796
++SR FF AYWYW+G+GAL GF ++ N ++LAL +LN F+KP+AV+ E+ E+ E
Sbjct: 746 VKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPEDGENAEN--- 802
Query: 797 IGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMP 856
GE + + S++E S K+GMVLPFEP+S+TFD+VVYSVDMP
Sbjct: 803 ----------GEVSSQIPSTDGGDSISE---SQNNKKGMVLPFEPHSITFDDVVYSVDMP 849
Query: 857 QQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIR 916
Q+MK QG ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I+
Sbjct: 850 QEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIK 909
Query: 917 ISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVME 976
ISGYPKKQETFARISGYCEQNDIHSP+VTVYESL YSAWLRLP +V+ +TRKMF++EVME
Sbjct: 910 ISGYPKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFVDEVME 969
Query: 977 LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
LVEL PLR +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR
Sbjct: 970 LVELGPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1029
Query: 1037 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIP 1096
TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+E+YVGPLG HSCHLI YFE+ P
Sbjct: 1030 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNP 1089
Query: 1097 GVEKIKDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRRNKLLIEDLSKPAPGSKD 1156
GV KIK+GYNPATWMLEV+AS+QE+ LG+DF ++YK S+LYRRNK LI +L P PGSKD
Sbjct: 1090 GVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALISELGVPRPGSKD 1149
Query: 1157 LHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGGKTEK 1216
LHF TQYSQS ++Q +ACLWKQHWSYWRNPAYTAVRF+FT FIAL+ G++FWDLG K K
Sbjct: 1150 LHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSK 1209
Query: 1217 RQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEI 1276
QDL NAMGSM+ A++FLG + SVQPVV +ER VFYRE AAGM+S IP+A Q+ IEI
Sbjct: 1210 SQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEI 1269
Query: 1277 PYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPTHHIASI 1336
PY+FVQS+ Y IVYAM+ F+W KFFWY+F M+F LL+FT YGM VAVTP ++ASI
Sbjct: 1270 PYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASI 1329
Query: 1337 VSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIASQYGDVEDKIETGETV 1396
V+ F+G+W LFSGFIIPRPR+P+WWRWYYWANP+AWTLYGL+ASQ+GD++ K+ ETV
Sbjct: 1330 VAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQTKLSDNETV 1389
Query: 1397 KHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQRR 1441
+ FLR Y+GFKH FLG VA VL A+ +F F IK FNFQRR
Sbjct: 1390 EQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482642|ref|XP_002285020.2| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2135 bits (5532), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1026/1440 (71%), Positives = 1193/1440 (82%), Gaps = 15/1440 (1%)
Query: 4 SHEIYLASTTSHRSHSR-WRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLT 62
+ + Y AS + R+ S WR+ FS SSR+EDDEEALKWAA+EKLPTYNRL++GLL
Sbjct: 3 TADTYRASGSLRRNGSSIWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRRGLLM 62
Query: 63 TSQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFE 122
S+GEA E+D+ NLG QE++ L+ +LV V E DNEKFLLKLKNRI+RVGI +P +EVRFE
Sbjct: 63 GSEGEASEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRFE 122
Query: 123 HLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTL 182
HLTI+AEAF+ S+ALPSF F E +LN + ILPS K+ TIL DVSGI+KP RLTL
Sbjct: 123 HLTIDAEAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLTL 182
Query: 183 LLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242
LLGPPSSGKTTLLLALAGKLDP+LKV GRVTYNGH M+EFVP+RTAAYISQHD HIGEMT
Sbjct: 183 LLGPPSSGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEMT 242
Query: 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYY 302
VRETLAF+ARCQGVG RY+ML ELSRREKAA IKPDPD+DVFMKAA+TEG++ NV+TDY
Sbjct: 243 VRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYT 302
Query: 303 LKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLDICADTMVGDEM RG+SGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI
Sbjct: 303 LKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQI 362
Query: 363 VNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFK 422
+N KQ IHI +GTAVISLLQPAPETYNLFDDIILLSD QIVYQGPRE VLEFFES+GFK
Sbjct: 363 INSLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGFK 422
Query: 423 CPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPF 482
CP+RKG ADFLQEVTS+KDQ QYWA KD PY FV V+EF AFQSFH+G+K++DEL +PF
Sbjct: 423 CPERKGEADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASPF 482
Query: 483 DKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFF 542
D++KSH AALTTK YGV K+ELL A SRE LLMKRNSFVYIFKL Q+ + ++ MTLF
Sbjct: 483 DRAKSHPAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLFL 542
Query: 543 RTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAI 602
RT+M+K+S DG IY GALFFT+VM +F+G AE++MTI KLPVFYKQRDF F+P WAYA+
Sbjct: 543 RTEMNKNSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYAL 602
Query: 603 PSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGR 662
P+W+LKIPI+F+E AVWVF++YYVIG+DPN R F+QYLLLL NQM SGLFRF+ A GR
Sbjct: 603 PTWVLKIPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAGR 662
Query: 663 NLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWK 722
N++VA TFG+FAVL+L+ALGGF+LS + VKKWW W YWSSP+MYAQN I+ NEFLG SW
Sbjct: 663 NMIVASTFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWS 722
Query: 723 KFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRA 782
K STESLG+ VL+SR FF A+WYW+G GAL GFI + N + L L +LN FEKP+A
Sbjct: 723 KNVTNSTESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQA 782
Query: 783 VITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPY 842
VITE E DN + +G++ AE +H KK+GMVLPF+P+
Sbjct: 783 VITE-----ESDN--------AKTATTGDETHTWGEHMVEAIAEGNHNKKKGMVLPFQPH 829
Query: 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 902
S+TFD++ YSVDMP++MK QG ED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVL
Sbjct: 830 SITFDDIRYSVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVL 889
Query: 903 AGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEV 962
AGRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VTV+ESL YSAWLRLP +V
Sbjct: 890 AGRKTGGYIEGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHESLLYSAWLRLPSDV 949
Query: 963 NSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1022
NSETRKMFIEEVMELVEL PLR +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP
Sbjct: 950 NSETRKMFIEEVMELVELTPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1009
Query: 1023 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082
TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG+E+YVGPLG
Sbjct: 1010 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLG 1069
Query: 1083 HHSCHLISYFEAIPGVEKIKDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRRNKL 1142
HS HLI+YFE I GV KIKDGYNPATWMLEV+ +QE LGVDF +IYK S+LYRRNK
Sbjct: 1070 RHSSHLINYFEGIEGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTEIYKNSDLYRRNKD 1129
Query: 1143 LIEDLSKPAPGSKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALL 1202
LI++LS+PAPG+KDL+FATQYSQ F+QF+ACLWKQ WSYWRNP YTAVRFLFT FIAL+
Sbjct: 1130 LIKELSQPAPGTKDLYFATQYSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTTFIALM 1189
Query: 1203 LGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMF 1262
G IFWDLG + ++QDL NAMGSM+ A++FLG + SVQPV+ VER VFYRE AAGM+
Sbjct: 1190 FGLIFWDLGTRRTRQQDLLNAMGSMYAAVLFLGVQNAQSVQPVIVVERTVFYRERAAGMY 1249
Query: 1263 SGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGM 1322
S +P+A Q ++EIPYVF Q+++Y IVY M+ F+WTA KFFWY+F+M+ LL+FT YGM
Sbjct: 1250 SALPYAFGQALVEIPYVFAQAVVYGVIVYGMIGFEWTATKFFWYLFFMFCTLLYFTFYGM 1309
Query: 1323 TAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIASQ 1382
AVA TP HIASI++ F+ LW LFSGFI+PR RIP+WWRWY W P+AWTLYGL+ASQ
Sbjct: 1310 MAVAATPNQHIASIIAATFYTLWNLFSGFIVPRNRIPVWWRWYCWICPVAWTLYGLVASQ 1369
Query: 1383 YGDVEDK-IETGETVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQRR 1441
+GD++ +E +TVK FL DY+GFKH FLG VA V++ F LF +F IK FNFQ+R
Sbjct: 1370 FGDIQSTLLENNQTVKQFLDDYFGFKHDFLGVVAAVVVGFVVLFLFIFAYAIKAFNFQKR 1429
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572795|ref|XP_002527330.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223533330|gb|EEF35082.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2134 bits (5529), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1021/1441 (70%), Positives = 1216/1441 (84%), Gaps = 7/1441 (0%)
Query: 3 ESHEIYLASTTSHR-SHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKG-L 60
E EIY AS++ R S WR+ S FS S RE+DDEEALKWAA+EKLPTY+RL+KG L
Sbjct: 2 EGSEIYRASSSLRRGSFVGWRSNS-DVFSRSGREDDDEEALKWAALEKLPTYDRLRKGIL 60
Query: 61 LTTSQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVR 120
L+ SQG E+D+ NLGLQE++ LI +LV V E DNEKFLLKLKNRI+RVGI LPT+EVR
Sbjct: 61 LSASQGVFSEIDIDNLGLQEKKTLIERLVKVAEEDNEKFLLKLKNRIDRVGIELPTIEVR 120
Query: 121 FEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRL 180
+EHL IEAEA +ALPSF F +I E LLN+LHILPS + TILKDVSGI+KP R+
Sbjct: 121 YEHLNIEAEAVSGGRALPSFVNFSISIIEGLLNFLHILPSRTRPFTILKDVSGIIKPSRM 180
Query: 181 TLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGE 240
TLLLGPPSSGKTTLLLALAGKLDP+LK SG VTYNG+ M+EF+P+RTAAYISQHD H+GE
Sbjct: 181 TLLLGPPSSGKTTLLLALAGKLDPNLKFSGNVTYNGYKMNEFIPQRTAAYISQHDEHMGE 240
Query: 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITD 300
+TV+ETLAF+ARCQGVG+++E+L ELSRRE AA IKPDPDIDVFMKAA+TEG+E NV+TD
Sbjct: 241 LTVKETLAFSARCQGVGSQHELLAELSRREIAANIKPDPDIDVFMKAAATEGQETNVVTD 300
Query: 301 YYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF 360
Y LK+LGL+ICADT+VG+ M RG+SGGQKKRVTTGEM+VGPA ALFMDEISTGLDSSTT+
Sbjct: 301 YVLKILGLEICADTLVGNAMIRGISGGQKKRVTTGEMLVGPARALFMDEISTGLDSSTTY 360
Query: 361 QIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMG 420
QIVNC KQ HI +GTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE VL+FFE MG
Sbjct: 361 QIVNCLKQTTHILNGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREQVLDFFEYMG 420
Query: 421 FKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQT 480
F+CP+RKGVADFLQEVTS+KDQ+QYWA +D+PYRF+ V+EF A QS+ VG+++ DEL
Sbjct: 421 FRCPERKGVADFLQEVTSRKDQKQYWARRDQPYRFITVKEFSEALQSYEVGRRIGDELSI 480
Query: 481 PFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTL 540
PFDKSKSH AAL TK YGVGKRELLKAC SRE LLMKRNSF YIFKL Q+ + + +TL
Sbjct: 481 PFDKSKSHPAALATKKYGVGKRELLKACISREFLLMKRNSFFYIFKLSQLIIMATIAITL 540
Query: 541 FFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAY 600
F RT+M ++++TDGG+Y GALF+T+ + +F+G AE+SMTI KLPVFYKQRD F+P W+Y
Sbjct: 541 FLRTEMDRETLTDGGVYLGALFYTVTIIMFNGMAELSMTIAKLPVFYKQRDLLFYPAWSY 600
Query: 601 AIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAI 660
++P+W+LKIP++F+E VWV ++YY IG+DPN GRFFKQYLLLL NQM SGLFRF+ A
Sbjct: 601 SLPTWLLKIPVTFVEVGVWVCINYYAIGFDPNIGRFFKQYLLLLFVNQMASGLFRFIAAA 660
Query: 661 GRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHS 720
GRN++VA TFGSFA+L L ALGGFVLSREE+KKWW WAYW SP+MY QN I+ NEFLG+S
Sbjct: 661 GRNMIVANTFGSFALLTLFALGGFVLSREEIKKWWIWAYWLSPLMYGQNAIVVNEFLGNS 720
Query: 721 WKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKP 780
W P STESLGVQ+L+SR F+ +AYWYW+GLGAL F+L+ N+ FALALTFL+ FEK
Sbjct: 721 WSHIPPNSTESLGVQLLKSRGFYPYAYWYWIGLGALICFLLVFNLLFALALTFLDPFEKR 780
Query: 781 RAVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFE 840
+AVI+E+ +S+E ++ G ++QL N G S +SS +E +H KK+GMVLPFE
Sbjct: 781 QAVISEDSQSNEPADQTGASIQLRNYGSS----HISTTSSDGEISEVNHNKKKGMVLPFE 836
Query: 841 PYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 900
P S+TFD+V+YSVDMPQ+M+ QGV EDKLVLL GVSGAFRPGVLTALMG+SGAGKTTLMD
Sbjct: 837 PRSITFDDVIYSVDMPQEMRSQGVLEDKLVLLKGVSGAFRPGVLTALMGISGAGKTTLMD 896
Query: 901 VLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP 960
VLAGRKTGGYI GDIRISGYPK QETFARISGYCEQNDIHSP VTV ESL YSAWLRLP
Sbjct: 897 VLAGRKTGGYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTVRESLIYSAWLRLPS 956
Query: 961 EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020
EV+S+TRKMF+EEVMELVEL ++ +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 957 EVDSDTRKMFVEEVMELVELDSIKNALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1016
Query: 1021 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG E+YVGP
Sbjct: 1017 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGP 1076
Query: 1081 LGHHSCHLISYFEAIPGVEKIKDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRRN 1140
LG SCHLI YFE I GV KIKDGYNPATWMLEV++++QE+A+G+DF DIYK SELYRRN
Sbjct: 1077 LGRQSCHLIKYFEGIEGVSKIKDGYNPATWMLEVTSTAQELAMGIDFSDIYKNSELYRRN 1136
Query: 1141 KLLIEDLSKPAPGSKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIA 1200
K +I++LS PAPG DL+F T+YSQS F+Q +ACLWKQ SYWRNP YTAVRFLFT+FIA
Sbjct: 1137 KAMIKELSVPAPGLNDLYFPTKYSQSFFTQCLACLWKQRLSYWRNPPYTAVRFLFTSFIA 1196
Query: 1201 LLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAG 1260
L+ G+IFWDLG + K+QD+ NA GSM+ A++FLG + SVQPVV VER VFYRE AAG
Sbjct: 1197 LMFGTIFWDLGSRRSKQQDIFNAAGSMYAAVLFLGVQNSASVQPVVAVERTVFYRERAAG 1256
Query: 1261 MFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLY 1320
M+S +P+A AQ+++EIPY+ Q+++Y +I YAM+ FDW+ AKFFWY+F+M+F LL+FTL+
Sbjct: 1257 MYSAMPYAYAQVLVEIPYLLCQAVVYGTITYAMIGFDWSIAKFFWYLFFMFFTLLYFTLF 1316
Query: 1321 GMTAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIA 1380
GM VA TP H IA+I+S+ F+G+W LFSGFIIPR R+P+WWRWYYWA P++WTLYGLIA
Sbjct: 1317 GMMCVAATPNHQIAAIISSAFYGIWNLFSGFIIPRTRMPVWWRWYYWACPVSWTLYGLIA 1376
Query: 1381 SQYGDVEDKIETGETVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQR 1440
SQ+GD+++ +E +T++ F++DYYGF H F+ VAGV++ FA LF F + IK FNFQR
Sbjct: 1377 SQFGDMQNALEDKQTIEEFIKDYYGFNHDFVIVVAGVILGFALLFAFTFGVSIKSFNFQR 1436
Query: 1441 R 1441
R
Sbjct: 1437 R 1437
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519409|ref|XP_003528365.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2134 bits (5529), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1011/1443 (70%), Positives = 1195/1443 (82%), Gaps = 22/1443 (1%)
Query: 3 ESHEIYLA-STTSHRSHSRWRTGSVGAFSMSSR--EEDDEEALKWAAIEKLPTYNRLKKG 59
E +IY A ++ S + WR + AFS SSR E++DEEALKWAA+EKLPTYNRL+KG
Sbjct: 2 EGSDIYRARNSLRANSSTVWRNSIMEAFSRSSRHEEDNDEEALKWAALEKLPTYNRLRKG 61
Query: 60 LLTTSQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEV 119
LLTTS+G A E+D++ LG QERQ+L+++L+ V E DNE LLKLK RI+RVGI +PT+EV
Sbjct: 62 LLTTSRGVANEIDITELGFQERQKLLDRLINVAEEDNETLLLKLKERIDRVGIDIPTIEV 121
Query: 120 RFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGR 179
R+EHL +EAEA++ S+ALP+F F T + E LHIL KKH+TIL+DVSGI+KP R
Sbjct: 122 RYEHLNVEAEAYVGSRALPTFLNFVTNMVESFFTSLHILSGKKKHVTILRDVSGIIKPRR 181
Query: 180 LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIG 239
+ LLLGPPSSGKTTLLLAL+GKLDP+LKVSGRV YNGH M+EFVP+RTAAYISQHD HIG
Sbjct: 182 MALLLGPPSSGKTTLLLALSGKLDPTLKVSGRVNYNGHEMNEFVPQRTAAYISQHDVHIG 241
Query: 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVIT 299
EMTVRETLAF+ARCQGVGTRY++L+EL+RREK A IKPDPDIDV+MKAA+T G+EA+++T
Sbjct: 242 EMTVRETLAFSARCQGVGTRYDLLSELARREKEAKIKPDPDIDVYMKAAATGGQEASLVT 301
Query: 300 DYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 359
DY LK+LGLDICADTM+GDEM RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 302 DYVLKILGLDICADTMMGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 361
Query: 360 FQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 419
FQIV +Q +HI +GTAVISLLQPAPETY LFDDI+L+SDGQIVYQGPRE VLEFFE +
Sbjct: 362 FQIVKSLRQYVHILNGTAVISLLQPAPETYELFDDIVLISDGQIVYQGPREYVLEFFEYV 421
Query: 420 GFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQ 479
GF+CP+RKGVADFLQEVTS+KDQEQYW H+D YRFV V EF AFQSFHVG+++ +EL
Sbjct: 422 GFQCPERKGVADFLQEVTSRKDQEQYWIHRDESYRFVTVTEFAEAFQSFHVGRRIGEELA 481
Query: 480 TPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMT 539
TPFDKSKSH AALTTK YGV K+ELLKA SRE LLMKRNSFVYIFKL Q+ + ++ MT
Sbjct: 482 TPFDKSKSHPAALTTKKYGVNKKELLKANFSREYLLMKRNSFVYIFKLFQLTILAILTMT 541
Query: 540 LFFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWA 599
+F RT+MH++S+ DGG+Y GALFF +V+ +F+G AEISMTIVKLP+FYKQRD F+P WA
Sbjct: 542 MFLRTEMHRNSLNDGGVYTGALFFAVVILMFNGLAEISMTIVKLPIFYKQRDLLFYPSWA 601
Query: 600 YAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGA 659
YAIPSWILKIPI+F+E AVWVFL+YYVIG+DPN GR KQYL+LL NQM SGLFR + A
Sbjct: 602 YAIPSWILKIPITFIEAAVWVFLTYYVIGFDPNVGRLLKQYLVLLLINQMSSGLFRAIAA 661
Query: 660 IGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGH 719
+GRN++VA TFGSFA+LVL ALGGFVLSR ++K WW W YW SP+MY QN I+ NEFLG
Sbjct: 662 LGRNMIVASTFGSFALLVLFALGGFVLSRNDIKNWWIWGYWISPLMYGQNAIVVNEFLGD 721
Query: 720 SWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEK 779
SW FTP S ++LG+Q+LESR FF HAYWYW+G+GAL GF++L N+ + LALT+LN ++
Sbjct: 722 SWNHFTPNSNKTLGIQILESRGFFTHAYWYWIGIGALIGFMILFNIIYTLALTYLNPYDT 781
Query: 780 PRAVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPF 839
P+ ITEE ES + ES + ++ +SH KKRGM+LPF
Sbjct: 782 PQTTITEESESGMTN----------GIAES--------AGRAIAVMSSSHKKKRGMILPF 823
Query: 840 EPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 899
EPYS+TFD++VYSVDMP +MK QGV ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLM
Sbjct: 824 EPYSITFDQIVYSVDMPLEMKDQGVREDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLM 883
Query: 900 DVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP 959
DVLAGRKTGGYI G+I++SGYPK+QETFARISGYCEQNDIHSP VTVYESL YSAWLRLP
Sbjct: 884 DVLAGRKTGGYIEGNIKVSGYPKRQETFARISGYCEQNDIHSPHVTVYESLVYSAWLRLP 943
Query: 960 PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1019
EV + TRKMFIEEVMELVEL PLR SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 944 AEVEAYTRKMFIEEVMELVELNPLRNSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1003
Query: 1020 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+E+YVG
Sbjct: 1004 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1063
Query: 1080 PLGHHSCHLISYFEAIPGVEKIKDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRR 1139
PLG HS +I YFE+I GV KIKDGYNPATWMLEV+ +QE+ LGVDF +IY+ S L RR
Sbjct: 1064 PLGRHSSQMIKYFESIEGVGKIKDGYNPATWMLEVTTPAQELNLGVDFHEIYRNSGLCRR 1123
Query: 1140 NKLLIEDLSKPAPGSKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFI 1199
NK LI +L PAPGSKDLHF TQY QS Q +ACLWKQHWSYWRNP YTAVRFL T
Sbjct: 1124 NKRLISELGNPAPGSKDLHFPTQYPQSLLVQCLACLWKQHWSYWRNPPYTAVRFLSTTVT 1183
Query: 1200 ALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAA 1259
A+L G++FWDLGGK RQDL NAMGSM+ A++F+G + SVQPVV +ER VFYRE AA
Sbjct: 1184 AVLFGTMFWDLGGKYSSRQDLFNAMGSMYNAVLFVGVQNSASVQPVVAIERTVFYRERAA 1243
Query: 1260 GMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTL 1319
GM+S +P+ALAQ++IE+PYVFVQ+ YS IVYAMM F+WT KFFWY+F+MYF L +FT
Sbjct: 1244 GMYSALPYALAQVIIELPYVFVQATSYSVIVYAMMGFEWTLQKFFWYVFFMYFTLCYFTF 1303
Query: 1320 YGMTAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLI 1379
YGM VAVTP HH+AS+V++ F+G+W LFSGF+I RP IP+WWRWYYWA P+AWT+YGL+
Sbjct: 1304 YGMMTVAVTPNHHVASVVASAFYGIWNLFSGFVIARPSIPVWWRWYYWACPVAWTIYGLV 1363
Query: 1380 ASQYGDVEDKIETGE-TVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNF 1438
ASQ+GD+ + +++ +V+ F+R + G KH F+G A ++ FA LF I+F + IK FNF
Sbjct: 1364 ASQFGDITNVMKSENMSVQEFIRSHLGIKHDFVGVSAIMVSGFAVLFVIIFAVSIKAFNF 1423
Query: 1439 QRR 1441
QRR
Sbjct: 1424 QRR 1426
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455075|ref|XP_003597818.1| Pleiotropic drug resistance protein [Medicago truncatula] gi|355486866|gb|AES68069.1| Pleiotropic drug resistance protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2128 bits (5514), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1003/1442 (69%), Positives = 1193/1442 (82%), Gaps = 19/1442 (1%)
Query: 3 ESHEIYLASTT-SHRSHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLL 61
E +IY A+ + RS + WR V FS SSREEDDEEALKWAA+EKLPTYNRL+KGLL
Sbjct: 2 EGTDIYRATNSLRARSSTVWRQSGVEVFSKSSREEDDEEALKWAALEKLPTYNRLRKGLL 61
Query: 62 TTSQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRF 121
T S G A EVDV +L QE+Q+L+ +LV V E DNE+FLLK+K R++RVG+ +PT+EVR+
Sbjct: 62 TASHGGAHEVDVGDLAFQEKQKLLERLVKVAEEDNERFLLKVKERVDRVGLDIPTIEVRY 121
Query: 122 EHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLT 181
++L I+AEAF+ S+ALPSF T + E +LN+LHI+P+ K+H++ILKDVSGIVKP R+T
Sbjct: 122 QNLKIDAEAFVGSRALPSFINAATNVVEGVLNFLHIIPTKKRHVSILKDVSGIVKPRRMT 181
Query: 182 LLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEM 241
LLLGPP SGKTTLLLAL+GKLDPSL+++G VTYNGH ++EFVP+RTAAYISQHD HIGEM
Sbjct: 182 LLLGPPGSGKTTLLLALSGKLDPSLQLTGSVTYNGHGLNEFVPQRTAAYISQHDVHIGEM 241
Query: 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDY 301
TVRETLAF+ARCQGVG+RY+ML+ELSRREKAA IKPDPDIDV+MKA +TEG+E ++ TDY
Sbjct: 242 TVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDIDVYMKAIATEGQEYSISTDY 301
Query: 302 YLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 361
LK+LGLDICADTMVGDEM RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQ
Sbjct: 302 VLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQ 361
Query: 362 IVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGF 421
IV+ +Q +HI +GTAVISLLQPAPETY+LFDDIIL+SDGQ+VY GPRE VL+FFE+MGF
Sbjct: 362 IVSSLRQYVHIMNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFETMGF 421
Query: 422 KCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTP 481
KCP+RKG ADFLQEVTSKKDQ QYW +D+PYRFV V +F AFQSFH+G+KL++EL P
Sbjct: 422 KCPERKGAADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGRKLAEELSVP 481
Query: 482 FDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLF 541
FDK+KSH AALTTK YG+ K ELLKA SRE LLMKRNSFVYIFKL Q+ + L+ MTLF
Sbjct: 482 FDKTKSHPAALTTKEYGLNKTELLKANFSREYLLMKRNSFVYIFKLTQLFIMALIAMTLF 541
Query: 542 FRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYA 601
FRT+MH++ D G+YAGALFFT+V +F+G +EISMTI KLPV+YKQRD F+P WAYA
Sbjct: 542 FRTEMHRNDQDDAGVYAGALFFTLVTMMFNGMSEISMTIAKLPVYYKQRDLLFYPSWAYA 601
Query: 602 IPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIG 661
IPSWILKIP+S +E ++WVFL+YYVIG+DPN GR FKQ+++L +QM SGLFR + ++G
Sbjct: 602 IPSWILKIPVSLMEVSLWVFLTYYVIGFDPNVGRMFKQFVVLFFMSQMASGLFRAIASLG 661
Query: 662 RNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSW 721
RN++VA TFGSFA+L L+LGGF+LSR+++K WW W YW SP+MY QN ++ANEFLGHSW
Sbjct: 662 RNMIVANTFGSFALLTFLSLGGFILSRKDIKGWWIWGYWISPLMYGQNALMANEFLGHSW 721
Query: 722 KKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPR 781
+T LG L++R FF HAYWYW+G+G L GF+ L NV F +AL L F+KP
Sbjct: 722 HN----ATADLGKDYLDTRGFFPHAYWYWIGVGGLVGFVFLFNVAFGVALAVLGPFDKPS 777
Query: 782 AVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEP 841
A ITE+ E D + V+L SG + S+T E+SH KK+GMVLPFEP
Sbjct: 778 ATITEDSEDDSSTVQ---EVELPRIESSGR-------ADSVT--ESSHGKKKGMVLPFEP 825
Query: 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 901
+S+TFD++VYSVDMP +MK QGV ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDV
Sbjct: 826 HSITFDDIVYSVDMPVEMKEQGVREDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDV 885
Query: 902 LAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPE 961
LAGRKTGGYI GDI++SGYPKKQETFARISGYCEQNDIHSP VTVYESL YSAWLRLP
Sbjct: 886 LAGRKTGGYIDGDIKVSGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPSG 945
Query: 962 VNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021
V+S TRKMFI+EVM+LVEL LR SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDE
Sbjct: 946 VDSNTRKMFIDEVMDLVELNSLRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1005
Query: 1022 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081
PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+E+YVGPL
Sbjct: 1006 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1065
Query: 1082 GHHSCHLISYFEAIPGVEKIKDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRRNK 1141
G HS HLI YFE+I GV KIKDGYNPATWMLEV+ ++QE+ LGVDF D+YK S+LYRRNK
Sbjct: 1066 GRHSTHLIKYFESIDGVSKIKDGYNPATWMLEVTTTAQELNLGVDFTDLYKNSDLYRRNK 1125
Query: 1142 LLIEDLSKPAPGSKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIAL 1201
LI++LS PAPGSKDLHF TQ+SQS Q ACLWKQ WSYWRNP YTAVRF FT FI L
Sbjct: 1126 QLIQELSVPAPGSKDLHFPTQFSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFTTFIGL 1185
Query: 1202 LLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGM 1261
+ G++FWDLGGK RQDL NA+GSM+TA++FLG + SVQPVV VER VFYRE AAGM
Sbjct: 1186 MFGTMFWDLGGKHSSRQDLLNAVGSMYTAVLFLGVQNSSSVQPVVAVERTVFYREKAAGM 1245
Query: 1262 FSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYG 1321
+S +P+A +QI++E+PYVF Q++IY IVYAM+ FDWTA KF WY+F+MYF LL+FT YG
Sbjct: 1246 YSALPYAFSQILVELPYVFAQAVIYGVIVYAMIGFDWTAEKFLWYLFFMYFTLLYFTFYG 1305
Query: 1322 MTAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIAS 1381
M AVAVTP HH+ASIV+ F+ +W LFSGF++PRP IPIWWRWYYWA P+AWT+YGL+AS
Sbjct: 1306 MMAVAVTPNHHVASIVAAAFYAIWNLFSGFVVPRPSIPIWWRWYYWACPVAWTIYGLVAS 1365
Query: 1382 QYGDVEDKIET--GETVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQ 1439
Q+GD+ + T G+ VK FL D++G +H F+G A V+ A F +F + IK FNFQ
Sbjct: 1366 QFGDITTVMSTEGGKDVKTFLDDFFGIQHDFIGWCALVVGGIAVGFAFIFAVAIKSFNFQ 1425
Query: 1440 RR 1441
+R
Sbjct: 1426 KR 1427
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1441 | ||||||
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.968 | 0.960 | 0.554 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.979 | 0.960 | 0.547 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.969 | 0.961 | 0.553 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.974 | 0.988 | 0.533 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.963 | 0.957 | 0.491 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.537 | 0.543 | 0.613 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.533 | 0.533 | 0.528 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.521 | 0.527 | 0.465 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.630 | 0.641 | 0.463 | 3.4e-212 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.648 | 0.661 | 0.418 | 3.7e-190 |
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4123 (1456.4 bits), Expect = 0., P = 0.
Identities = 789/1424 (55%), Positives = 1017/1424 (71%)
Query: 29 FSMSSREEDDEEALKWAAIEKLPTYNRLKKGLL--TTSQG--EAFEVDVSNLGLQERQRL 84
F S R E+D+ L+WAAIE+LPT++RL+KG+L T++ G E ++D++ L ++++ L
Sbjct: 48 FGRSERREEDDMELRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEPKDKKHL 107
Query: 85 INKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKFF 144
+ +++ E DNEKFL L+ R +RVGI +P +EVR+E++++E + AS+ALP+
Sbjct: 108 MEMILSFVEEDNEKFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALPTLFNVT 167
Query: 145 TTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDP 204
E +L + H+LPS +K + ILKD+SGIVKP R+TLLLGPP D
Sbjct: 168 LNTLESILGFFHLLPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDD 227
Query: 205 SLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLT 264
+L++SGR+TY GH EFVP++T AYISQHD H GEMTVRE L F+ RC GVG+RY++++
Sbjct: 228 TLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQLMS 287
Query: 265 ELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324
ELSRREK GIKPDP ID FMK+ + G+E +++TDY LK+LGLDICAD + GD MRRG+
Sbjct: 288 ELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMRRGI 347
Query: 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQP 384
SGGQKKR+TTGEM+VGPA ALFMDEISTGLDSSTTFQI +Q +HI+ T +ISLLQP
Sbjct: 348 SGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISLLQP 407
Query: 385 APETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQ 444
APET+ LFDDIILLS+GQIVYQGPR+ VLEFFE GF+CP+RKGVADFLQEVTSKKDQEQ
Sbjct: 408 APETFELFDDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQ 467
Query: 445 YWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKREL 504
YW +++PY +V V +F + F +FH GQKL+ E + P+DK+K+H AAL T+ YG+ EL
Sbjct: 468 YWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISNWEL 527
Query: 505 LKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFT 564
KAC RE LLMKRNSFVY+FK +QI ++L+ MT++ RT+MH +V DG + GA+FF+
Sbjct: 528 FKACFDREWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFS 587
Query: 565 IVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSY 624
++ +F+G AE++ T+++LPVFYKQRDF F+PPWA+A+P+W+LKIP+S +E +W+ L+Y
Sbjct: 588 LINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTY 647
Query: 625 YVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXX 684
Y IG+ P+A RFF+Q L NQM LFRFLGAIGR V++ +
Sbjct: 648 YTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGF 707
Query: 685 XXXREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKK---FTPTSTESLGVQVLESRE 741
+++++ W WAY+ SP+MY Q I+ NEFL W T + +++G +L+SR
Sbjct: 708 IIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEVLLKSRG 767
Query: 742 FFAHAYWYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGTV 801
FF YW+W N+ + LAL +LN +A + EE + D+Q
Sbjct: 768 FFTEPYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGK-DKQKGE----- 821
Query: 802 QLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKL 861
N G G+ E NSSS+ PK RGMVLPF+P SL F+ V Y VDMP +MK
Sbjct: 822 ---NRGTEGSVV-ELNSSSN------KGPK-RGMVLPFQPLSLAFNNVNYYVDMPSEMKA 870
Query: 862 QGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921
QGV D+L LL V GAFRPG+LTAL+GVSGAGKTTLMDVLAGRKTGGYI G I ISGYP
Sbjct: 871 QGVEGDRLQLLRDVGGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 930
Query: 922 KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
K Q TFAR+SGYCEQNDIHSP VTVYESL YSAWLRL +++ +TR++F+EEVMELVELK
Sbjct: 931 KNQTTFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELK 990
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
PLR S+VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT
Sbjct: 991 PLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1050
Query: 1042 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIPGVEKI 1101
VDTGRTVVCTIHQPSIDIFE+FDEL LMKRGG+ +Y G LGHHS L+ YFEA+ GV KI
Sbjct: 1051 VDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKI 1110
Query: 1102 KDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRRNKLLIEDLSKPAPGSKDLHFAT 1161
DGYNPATWML+V+ S E + +DF I+ S LYRRN+ LI+DLS P PGSKD++F T
Sbjct: 1111 NDGYNPATWMLDVTTPSMESQMSLDFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKT 1170
Query: 1162 QYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGGKTEKRQDLS 1221
+Y+QS +Q AC WKQ+WSYWR+P Y A+RFL T I +L G IFW +G KTE QDL+
Sbjct: 1171 KYAQSFSTQTKACFWKQYWSYWRHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLN 1230
Query: 1222 NAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFV 1281
N G+M+ A++FLG +VQP + +ER VFYRE AAGM+S IP+A++Q+ +EI Y +
Sbjct: 1231 NFFGAMYAAVLFLGALNAATVQPAIAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTI 1290
Query: 1282 QSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPTHHIASIVSTXX 1341
Q+ +Y+ I+Y+M+ +WT AKF W+ +YM + ++FTLYGM +A+TP + IA I +
Sbjct: 1291 QTGVYTLILYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFF 1350
Query: 1342 XXXXXXXXXXXXXXXXXXXXXXXYYWANPIAWTLYGLIASQYGDVEDKIET---GET-VK 1397
YYWA P+AWTLYGLI SQ GD + + G+ +K
Sbjct: 1351 LSLWNLFSGFLIPRPQIPIWWRWYYWATPVAWTLYGLITSQVGDKDSMVHISGIGDIDLK 1410
Query: 1398 HFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQRR 1441
L++ +GF+H FL VA V IA+ LF +F GIK NFQRR
Sbjct: 1411 TLLKEGFGFEHDFLPVVAVVHIAWILLFLFVFAYGIKFLNFQRR 1454
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4103 (1449.4 bits), Expect = 0., P = 0.
Identities = 786/1436 (54%), Positives = 1015/1436 (70%)
Query: 29 FSMSSRE----EDDEEALKWAAIEKLPTYNRLKKGLLTT--------SQGEAFEVDVSNL 76
FS SR DDEEALKWAAIEKLPTY+RL+ L+ +Q + EVDV+ L
Sbjct: 36 FSSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDDVYGNQLMSKEVDVTKL 95
Query: 77 GLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKA 136
++RQ+ I+ + V E DNE+ L KL+NRI+RVGI LPTVEVR+EHLTI+A+ + +++
Sbjct: 96 DGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYEHLTIKADCYTGNRS 155
Query: 137 LPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXX 196
LP+ + E L + I + K LTILKD+SG++KPGR+TLLLGPP
Sbjct: 156 LPTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPPSSGKTTLLL 215
Query: 197 XXXXXXDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGV 256
D SL+VSG +TYNG+ +DEFVP +T+AYISQ+D H+G MTV+ETL F+ARCQGV
Sbjct: 216 ALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETLDFSARCQGV 275
Query: 257 GTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316
GTRY++L EL+RREK AGI P+ D+D+FMKA++ +G + +++TDY LK+LGLDIC DT+V
Sbjct: 276 GTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKDTIV 335
Query: 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGT 376
GD+M RG+SGGQKKRVTTGEM+VGP LFMDEISTGLDSSTTFQIV C +Q +H+N T
Sbjct: 336 GDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLNEAT 395
Query: 377 AVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
++SLLQPAPET++LFDDIIL+S+GQIVYQGPR+ +LEFFES GFKCP+RKG ADFLQEV
Sbjct: 396 VLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFLQEV 455
Query: 437 TSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKV 496
TSKKDQEQYW + +RPY ++ V EF + ++SFHVG K+S+EL PFDKS+ H+AAL
Sbjct: 456 TSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALVFDK 515
Query: 497 YGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGI 556
Y V KRELLK+C +E LLM+RN+F Y+FK +QI I + TLF RT+M+ + D +
Sbjct: 516 YSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGDANL 575
Query: 557 YAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEP 616
Y GAL F +++ +F+GFAE++M + +LPVFYKQRD F+P W +++P+++L IP S LE
Sbjct: 576 YIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSILES 635
Query: 617 AVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXX 676
W+ ++YY IG+ P+A RFFKQ+LL+ QM + LFR + ++ R +++A T
Sbjct: 636 TAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGALTLL 695
Query: 677 XXXXXXXXXXXREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSW--KKFTPTSTESLGV 734
+ ++ WW WAYW SP+ YA NG++ NE W K + ST LG
Sbjct: 696 LVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIKLGT 755
Query: 735 QVLESREFFAHAYWYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEEFESDEQD 794
VL + + + WYW N+ F LALT+LN K ++ EE D
Sbjct: 756 MVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEEENEDADQ 815
Query: 795 NRIGGTVQLSNCGESGNDNRE----RNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVV 850
+ LS GN E R S S EA K+GMVLPF P +++FD+V
Sbjct: 816 GKDPMRRSLSTA--DGNRRGEVAMGRMSRDSAAEASGGAGNKKGMVLPFTPLAMSFDDVK 873
Query: 851 YSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 910
Y VDMP +M+ QGV E +L LL GV+GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY
Sbjct: 874 YFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 933
Query: 911 ITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMF 970
I GD+RISG+PK QETFARISGYCEQ DIHSP VTV ESL +SA+LRLP EV + + MF
Sbjct: 934 IEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEKMMF 993
Query: 971 IEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
+++VMELVEL LR S+VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA
Sbjct: 994 VDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1053
Query: 1031 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLIS 1090
AAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG+ +Y GPLG +S ++
Sbjct: 1054 AAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSHKVVE 1113
Query: 1091 YFEAIPGVEKIKDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRRNKLLIEDLSKP 1150
YFE+ PGV KI + YNPATWMLE S+ + E+ L VDF ++Y +S L++RNK L+++LS P
Sbjct: 1114 YFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQRNKALVKELSVP 1173
Query: 1151 APGSKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDL 1210
G+ DL+FATQ+SQ+ + QF +CLWKQ W+YWR+P Y VRF+FT +LL+G++FW +
Sbjct: 1174 PAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLLIGTVFWQI 1233
Query: 1211 GGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALA 1270
GG DL+ +G+++ A+IF+G C +VQP+V VER VFYRE AAGM+S +P+A++
Sbjct: 1234 GGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFYRERAAGMYSAMPYAIS 1293
Query: 1271 QIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPT 1330
Q+ E+PYV +Q++ YS IVYAM+ F+W A KFFW++F YF+ L++T YGM V++TP
Sbjct: 1294 QVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGMMTVSLTPN 1353
Query: 1331 HHIASIVSTXXXXXXXXXXXXXXXXXXXXXXXXXYYWANPIAWTLYGLIASQYGDVEDKI 1390
+ASI ++ YYW P+AWT+YGLI SQYGDVE +I
Sbjct: 1354 QQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDVETRI 1413
Query: 1391 ET--GE---TVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQRR 1441
+ G TVK ++ D+YGF+ F+G VA VLIAF F +F I+ NFQ R
Sbjct: 1414 QVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4095 (1446.6 bits), Expect = 0., P = 0.
Identities = 788/1424 (55%), Positives = 1009/1424 (70%)
Query: 29 FSMSSREEDDEEALKWAAIEKLPTYNRLKKGLL--TTSQGEAF--EVDVSNLGLQERQRL 84
F S R E+D+ L+WAA+E+LPTY+RL+KG+L T G+ +VDV+NL +E++ L
Sbjct: 46 FGRSDRREEDDVELRWAALERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAPKEKKHL 105
Query: 85 INKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKFF 144
+ ++ E DNEKFL +L+ R +RVGI +P +EVR+E+L++E + AS+ALP+
Sbjct: 106 MEMILKFVEEDNEKFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRSASRALPTLFNVT 165
Query: 145 TTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDP 204
E +L H+LPS K+ + ILKD+SGI+KP R+TLLLGPP D
Sbjct: 166 LNTIESILGLFHLLPSKKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQALAGKLDD 225
Query: 205 SLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLT 264
+L++SGR+TY GH EFVP++T AYISQHD H GEMTVRE+L F+ RC GVGTRY++LT
Sbjct: 226 TLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGTRYQLLT 285
Query: 265 ELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324
ELSRRE+ AGIKPDP+ID FMK+ + G+E +++TDY LK+LGLDICADT+VGD MRRG+
Sbjct: 286 ELSRREREAGIKPDPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGDVMRRGI 345
Query: 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQP 384
SGGQ+KR+TTGEM+VGPA ALFMDEISTGLDSSTTFQI +Q +HI T VISLLQP
Sbjct: 346 SGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMVISLLQP 405
Query: 385 APETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQ 444
APET+ LFDDIILLS+GQIVYQG R+ VLEFFE MGFKCP+RKG+ADFLQEVTSKKDQEQ
Sbjct: 406 APETFELFDDIILLSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTSKKDQEQ 465
Query: 445 YWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKREL 504
YW ++ PY +V V +F + F SFH GQ+L+ E + P+DK+K+H AAL T+ YG+ ++L
Sbjct: 466 YWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYGISNKDL 525
Query: 505 LKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFT 564
KAC RE LLMKRNSFVY+FK +QI ++L+ MT++FRT+MH +V DG + GALFF+
Sbjct: 526 FKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFYGALFFS 585
Query: 565 IVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSY 624
++ +F+G AE++ T+++LPVF+KQRDF F+PPWA+A+P ++LKIP+S +E +W+ L+Y
Sbjct: 586 LINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVIWIALTY 645
Query: 625 YVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXX 684
Y IG+ P+A RFF+Q L NQM LFRFLGA+GR V+A +
Sbjct: 646 YTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVVFVLGGF 705
Query: 685 XXXREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSW---KKFTPTSTESLGVQVLESRE 741
++++ W W Y++SP+MY Q ++ NEFL W T + +++G +L+SR
Sbjct: 706 IISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDERWGSPNNDTRINAKTVGEVLLKSRG 765
Query: 742 FFAHAYWYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGTV 801
FF YW+W N + +AL +LN +A E + +D G
Sbjct: 766 FFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVE---EGKDKHKG--- 819
Query: 802 QLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKL 861
S+ G G S LT +SH K+GMVLPF+P SL F+ V Y VDMP +MK
Sbjct: 820 --SHSGTGG-------SVVELTST-SSHGPKKGMVLPFQPLSLAFNNVNYYVDMPAEMKA 869
Query: 862 QGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921
QGV D+L LL V GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGGY+ G I ISGYP
Sbjct: 870 QGVEGDRLQLLRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYP 929
Query: 922 KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
K Q TFAR+SGYCEQNDIHSP VTVYESL YSAWLRL +++++TR+MF+EEVMELVELK
Sbjct: 930 KNQATFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELVELK 989
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
PLR S+VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT
Sbjct: 990 PLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1049
Query: 1042 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIPGVEKI 1101
VDTGRTVVCTIHQPSIDIFE+FDEL LMKRGG+ +Y G LGHHS L+ YFEAI GV KI
Sbjct: 1050 VDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKI 1109
Query: 1102 KDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRRNKLLIEDLSKPAPGSKDLHFAT 1161
KDGYNPATWML+V+ S E + VDF I+ S + RRN+ LI++LS P PGS DL+F T
Sbjct: 1110 KDGYNPATWMLDVTTPSMESQMSVDFAQIFVNSSVNRRNQELIKELSTPPPGSNDLYFRT 1169
Query: 1162 QYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGGKTEKRQDLS 1221
+Y+Q +Q AC WK +WS WR P Y A+RFL T I +L G +FW G K EK QDL+
Sbjct: 1170 KYAQPFSTQTKACFWKMYWSNWRYPQYNAIRFLMTVVIGVLFGLLFWQTGTKIEKEQDLN 1229
Query: 1222 NAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFV 1281
N G+M+ A++FLG +VQP V +ER VFYRE AAGM+S IP+A++Q+ +EI Y +
Sbjct: 1230 NFFGAMYAAVLFLGATNAATVQPAVAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTI 1289
Query: 1282 QSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPTHHIASIVSTXX 1341
Q+ +Y+ I+Y+M+ +DWT KFFW+ +YM ++FTLYGM VA+TP + IA I +
Sbjct: 1290 QTGVYTLILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICLSFF 1349
Query: 1342 XXXXXXXXXXXXXXXXXXXXXXXYYWANPIAWTLYGLIASQYGDVEDKIE-TGE---TVK 1397
YYWA+P+AWTLYG+I SQ GD + + TG ++K
Sbjct: 1350 LSFWNLFSGFLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGDRDSIVHITGVGDMSLK 1409
Query: 1398 HFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQRR 1441
L++ +GF + FL VA V IA+ +F F GIK NFQRR
Sbjct: 1410 TLLKNGFGFDYDFLPVVAVVHIAWILIFLFAFAYGIKFLNFQRR 1453
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4011 (1417.0 bits), Expect = 0., P = 0.
Identities = 759/1423 (53%), Positives = 1003/1423 (70%)
Query: 28 AFSMSS--REE-DDEEALKWAAIEKLPTYNRLKKGLLTTSQGEAFEVDVSNLGLQERQRL 84
AFS S+ ++E +DEE L+WAA+++LPTY+R+++G+ GE E+ + NL E++ L
Sbjct: 8 AFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLEASEQRLL 67
Query: 85 INKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKFF 144
+++LV E D E+F +++ R + V + P +EVRF++L +E+ + S+ALP+ F
Sbjct: 68 LDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRALPTIPNFI 127
Query: 145 TTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDP 204
+ E LL +H++ + LTIL +SG+++P RLTLLLGPP
Sbjct: 128 INMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLALAGRLGT 187
Query: 205 SLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLT 264
+L+ SG++TYNG+++ E + RT+AY+SQ D H+ EMTVR+TL FA RCQGVG +Y+ML
Sbjct: 188 NLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVGFKYDMLL 247
Query: 265 ELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324
EL+RREK AGI PD D+D+FMK+ + G E +++ +Y +K+LGLD CADT+VGDEM +G+
Sbjct: 248 ELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVGDEMIKGI 307
Query: 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQP 384
SGGQKKR+TTGE++VGPA LFMDEIS GLDSSTT QI+ + + H GT VISLLQP
Sbjct: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTTVISLLQP 367
Query: 385 APETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQ 444
+PETY LFDD+IL+S+GQI+YQGPR+ VL+FF S+GF CP RK VADFLQEVTSKKDQ+Q
Sbjct: 368 SPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVTSKKDQQQ 427
Query: 445 YWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKREL 504
YW+ RPYR+V +F AF+S+ G+KL+ +L+ PFDK +H AAL+T YGV K EL
Sbjct: 428 YWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQYGVKKSEL 487
Query: 505 LKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFT 564
LK + + LMK+N+F+Y+FK +Q+ + L+ MT+F RT MH +++ DG IY G+L+F+
Sbjct: 488 LKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIYLGSLYFS 547
Query: 565 IVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSY 624
+V+ LF+GF E+ M + KLPV YK RD F+P WAY +PSW+L IP S +E A WV ++Y
Sbjct: 548 MVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESATWVAVTY 607
Query: 625 YVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXX 684
Y IGYDP RF +Q+LL + +QM GLFR +G++GR+++VA T
Sbjct: 608 YTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLVVMTLGGF 667
Query: 685 XXXREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTST-ESLGVQVLESREFF 743
R+ + WW W YW SP+MYAQN NEFLGH+W+K T +SLG+ +L+ R F
Sbjct: 668 IISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLALLKERSLF 727
Query: 744 AHAYWYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGTVQL 803
+ YWYW N+ F L L LN + K +AV++ E E DE++ + G
Sbjct: 728 SGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSRE-ELDEREKKRKGD--- 783
Query: 804 SNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQG 863
E + RE S + K RGMVLPF+P SL+F + Y VD+P +K QG
Sbjct: 784 ----EFVVELREYLQHSG--SIHGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQG 837
Query: 864 VPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923
+ ED+L LL ++GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG I GD+ ISG+PK+
Sbjct: 838 ILEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKR 897
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
QETFARISGYCEQND+HSP +TV ESL +SA LRLP +++SET++ F+ EVMELVEL L
Sbjct: 898 QETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVELTSL 957
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
+LVGLPGV+GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+
Sbjct: 958 SGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1017
Query: 1044 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIPGVEKIKD 1103
TGRT+VCTIHQPSIDIFE+FDEL MKRGG +Y GPLG SC LI YFE+I GV+KIK
Sbjct: 1018 TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFESIEGVQKIKP 1077
Query: 1104 GYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRRNKLLIEDLSKPAPGSKDLHFATQY 1163
G+NPA WML+V+AS++E LGVDF +IY+ S L +RNK LIE LSKP+ +K++ F T+Y
Sbjct: 1078 GHNPAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNIAKEIEFPTRY 1137
Query: 1164 SQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGGKTEKRQDLSNA 1223
SQS +SQF+ACLWKQ+ SYWRNP YTAVRF +T I+L+LG+I W G K + +Q L NA
Sbjct: 1138 SQSLYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKRDTQQQLFNA 1197
Query: 1224 MGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQS 1283
MGSM+ A++F+G + QPVV +ER V YRE AAGM+S +P+A AQ+ IE PYV QS
Sbjct: 1198 MGSMYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYSALPFAFAQVFIEFPYVLAQS 1257
Query: 1284 LIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPTHHIASIVSTXXXX 1343
IYS+I YAM +F+W+A KF WY+F+MYF++++FT YGM A+TP H++ASI++
Sbjct: 1258 TIYSTIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTTAITPNHNVASIIAAPFYM 1317
Query: 1344 XXXXXXXXXXXXXXXXXXXXXYYWANPIAWTLYGLIASQYGDVEDKIETGE-----TVKH 1398
YYWANP+AWTLYGL+ SQYGD E ++ + VK
Sbjct: 1318 LWNLFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDDERSVKLSDGIHQVMVKQ 1377
Query: 1399 FLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQRR 1441
L D G+KH FLG A +++AF F ++F IK FNFQRR
Sbjct: 1378 LLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3489 (1233.2 bits), Expect = 0., P = 0.
Identities = 697/1418 (49%), Positives = 926/1418 (65%)
Query: 35 EEDDEEALKWAAIEKLPTYNRLKKGLLTTSQGEAFE-----VDVSNLGLQERQRLINKLV 89
+ D E AL+WA IE+LPT R++ LL E VDV+ LG ER +I KL+
Sbjct: 52 DHDAEYALQWAEIERLPTVKRMRSTLLDDGDESMTEKGRRVVDVTKLGAVERHLMIEKLI 111
Query: 90 TVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFE 149
E DN K L K++ RI+RVG+ LPT+EVR+E L + AE + + + T +
Sbjct: 112 KHIENDNLKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGK--ALPTLWNTA-K 168
Query: 150 DLLNYLHILPSTKKH---LTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDPSL 206
+L+ L L K H + I+ DV+GI+KPGRLTLLLGPP + +L
Sbjct: 169 RVLSELVKLTGAKTHEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENNL 228
Query: 207 KVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTEL 266
K SG ++YNGH +DEFVP++T+AYISQ+D HI EMTVRET+ F+ARCQGVG+R +++ E+
Sbjct: 229 KCSGEISYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEV 288
Query: 267 SRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSG 326
S+REK GI PD ++D +MKA S EG + ++ TDY LK+LGLDICA+ ++GD MRRG+SG
Sbjct: 289 SKREKEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISG 348
Query: 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAP 386
GQKKR+TT EM+VGP ALFMDEI+ GLDSST FQIV +Q HI+S T ++SLLQPAP
Sbjct: 349 GQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAP 408
Query: 387 ETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYW 446
E+Y+LFDDI+L++ G+IVY GPR VL FFE GF+CP+RKGVADFLQEV SKKDQ QYW
Sbjct: 409 ESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYW 468
Query: 447 AHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLK 506
H+D PY FV V+ F+ +G+K+ D L P+D+SKSH+ AL+ VY + EL
Sbjct: 469 WHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFI 528
Query: 507 ACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIV 566
AC SRE LLMKRN FVYIFK Q+ + MT+F RT+M D + G Y ALFF ++
Sbjct: 529 ACISREYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGID-IIHGNSYMSALFFALI 587
Query: 567 MPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYV 626
+ L GF E+SMT +L VFYKQ+ F+P WAYAIP+ +LK+P+SF E VW LSYYV
Sbjct: 588 ILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYV 647
Query: 627 IGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXXXX 686
IGY P A RFFKQ++LL A + +FR L AI + +V + T
Sbjct: 648 IGYTPEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVI 707
Query: 687 XREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQVLESREFFAHA 746
+ W KW +W++P+ Y + G+ NEFL W + P + +LG +L++R +
Sbjct: 708 PPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPRWNQMQPNNF-TLGRTILQTRGMDYNG 766
Query: 747 YWYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGTVQLSNC 806
Y YW N+ F LALTFL RA+I+++ S+ Q GT + +
Sbjct: 767 YMYWVSLCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQDKLSELQ-----GTEKST-- 819
Query: 807 GESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPE 866
E + ++ S TE E MVLPF+P ++TF ++ Y VDMP +M+ QG +
Sbjct: 820 -EDSSVRKKTTDSPVKTEEEDK------MVLPFKPLTVTFQDLNYFVDMPVEMRDQGYDQ 872
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQET 926
KL LL+ ++GAFRPG+LTALMGVSGAGKTTL+DVLAGRKT GYI GDIRISG+PK QET
Sbjct: 873 KKLQLLSDITGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKVQET 932
Query: 927 FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
FAR+SGYCEQ DIHSP +TV ES+ YSAWLRL PE+++ T+ F+++V+E +EL ++ S
Sbjct: 933 FARVSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDATTKTKFVKQVLETIELDEIKDS 992
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
LVG+ GV+GLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAAIVMR V+N DTGR
Sbjct: 993 LVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGR 1052
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIPGVEKIKDGYN 1106
T+VCTIHQPSIDIFEAFDEL L+KRGGR +Y GPLG HS H+I YFE++P + KIKD +N
Sbjct: 1053 TIVCTIHQPSIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHIIEYFESVPEIPKIKDNHN 1112
Query: 1107 PATWMLEVSASSQEVALGVDFCDIYKRSELYRRNKLLIEDLSKPAPGSKDLHFATQYSQS 1166
PATWML+VS+ S E+ LGVDF IY S LY+RN L++ LS+P GS D+ F ++QS
Sbjct: 1113 PATWMLDVSSQSVEIELGVDFAKIYHDSALYKRNSELVKQLSQPDSGSSDIQFKRTFAQS 1172
Query: 1167 AFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGGKTEKRQDLSNAMGS 1226
+ QF + LWK + SYWR+P+Y +R + T +L+ G++FW G + +Q + G+
Sbjct: 1173 WWGQFKSILWKMNLSYWRSPSYNLMRMMHTLVSSLIFGALFWKQGQNLDTQQSMFTVFGA 1232
Query: 1227 MFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIY 1286
++ ++FLG C S ER V YRE AGM+S +AL Q++ EIPY+F+Q+ +
Sbjct: 1233 IYGLVLFLGINNCASALQYFETERNVMYRERFAGMYSATAYALGQVVTEIPYIFIQAAEF 1292
Query: 1287 SSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPTHHIASIVSTXXXXXXX 1346
+ Y M+ F +A K FW ++ M+ +LL F M V++TP +A+I+ +
Sbjct: 1293 VIVTYPMIGFYPSAYKVFWSLYSMFCSLLTFNYLAMFLVSITPNFMVAAILQSLFYVGFN 1352
Query: 1347 XXXXXXXXXXXXXXXXXXYYWANPIAWTLYGLIASQYGDVEDKIET-GE--TVKHFLRDY 1403
Y+ P +WTL G I+SQYGD+ ++I G+ TV FL+DY
Sbjct: 1353 LFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEEINVFGQSTTVARFLKDY 1412
Query: 1404 YGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQRR 1441
+GF H L A V IAF +F + + NFQRR
Sbjct: 1413 FGFHHDLLAVTAVVQIAFPIALASMFAFFVGKLNFQRR 1450
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2555 (904.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 478/779 (61%), Positives = 589/779 (75%)
Query: 29 FSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSQ--GEAFEVDVSNLGLQERQRLIN 86
FS SSREEDDEEAL+WAA+EKLPT++RL+KG+LT S G E+D+ LG Q+ ++L+
Sbjct: 29 FSRSSREEDDEEALRWAALEKLPTFDRLRKGILTASHAGGPINEIDIQKLGFQDTKKLLE 88
Query: 87 KLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKFFTT 146
+L+ V + ++EK L KLK RI+RVGI LPT+EVRF+HL +EAE + +ALP+F F +
Sbjct: 89 RLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAEVHVGGRALPTFVNFISN 148
Query: 147 IFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDPSL 206
+ LN LH++P+ KK TIL DVSGIVKPGR+ LLLGPP D L
Sbjct: 149 FADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTTLLLALAGKLDQEL 208
Query: 207 KVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTEL 266
K +GRVTYNGH M+EFVP+RTAAYI Q+D HIGEMTVRET A+AAR QGVG+RY+MLTEL
Sbjct: 209 KQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARFQGVGSRYDMLTEL 268
Query: 267 SRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSG 326
+RREK A IKPDPDID+FMKA ST GE+ NV+TDY LK+LGL++CADTMVGD+M RG+SG
Sbjct: 269 ARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCADTMVGDDMLRGISG 328
Query: 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAP 386
GQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN + +HI +GTA+ISLLQPAP
Sbjct: 329 GQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFNGTALISLLQPAP 388
Query: 387 ETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYW 446
ET+NLFDDIIL+++G+I+Y+GPR+ V+EFFE+MGFKCP RKGVADFLQEVTSKKDQ QYW
Sbjct: 389 ETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQEVTSKKDQMQYW 448
Query: 447 AHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLK 506
A +D PYRF++V+EF AFQSFHVG+++ DEL PFDK+KSH AALTTK YGVG +EL+K
Sbjct: 449 ARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALTTKKYGVGIKELVK 508
Query: 507 ACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIV 566
SRE LLMKRNSFVY FK Q+ + + MTLFFRT+M K + DG +Y GALFF ++
Sbjct: 509 TSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDGSLYTGALFFILM 568
Query: 567 MPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYV 626
M +F+G +E+SMTI KLPVFYKQRD F+P W Y++P W+LKIPISF+E A+ F++YYV
Sbjct: 569 MLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFMEAALTTFITYYV 628
Query: 627 IGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXXXX 686
IG+DPN GR FKQY+LL+ NQM S LF+ + A+GRN++VA T
Sbjct: 629 IGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFAMLVFFALGGVVL 688
Query: 687 XREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQVLESREFFAHA 746
R+++KKWW W YW SP+MY QN ILANEF GHSW + S+E+LGV L+SR F HA
Sbjct: 689 SRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLGVTFLKSRGFLPHA 748
Query: 747 YWYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEEFESDE---QDNRIGGTVQ 802
YWYW N GF LALTFLN KP+AVI EE SDE Q R G V+
Sbjct: 749 YWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDETELQSARSEGVVE 807
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2143 (759.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 414/783 (52%), Positives = 537/783 (68%)
Query: 29 FSMSSRE----EDDEEALKWAAIEKLPTYNRLKKGLLTT-SQGEAF-------EVDVSNL 76
F+ SSR +DEEALKWA+IEKLPTYNRL+ L+ + + + VDV+ L
Sbjct: 34 FNTSSRRTKSVNEDEEALKWASIEKLPTYNRLRTSLMPELGEDDVYGNQILNKAVDVTKL 93
Query: 77 GLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKA 136
+ERQ+ I+ + V E DNE+ L KL+NRI+RVGI LPTVEVR++HLT++A+ + ++
Sbjct: 94 DGEERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTGDRS 153
Query: 137 LPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXX 196
LPS + E L + I + K LTILKDVSGIVKP R+TLLLGPP
Sbjct: 154 LPSLLNAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTTLLL 213
Query: 197 XXXXXXDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGV 256
D SL VSG VTYNG+ ++EFVP +T+AYISQ+D H+G MTV+ETL F+ARCQGV
Sbjct: 214 ALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARCQGV 273
Query: 257 GTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316
GTRY++L EL+RREK AGI P+ D+D+FMKA++ +G ++++ITDY LK+LGLDIC DT+V
Sbjct: 274 GTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKDTIV 333
Query: 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGT 376
GD+M RG+SGGQKKRVTTGEM+VGP LFMDEISTGLDSSTTFQIV C +Q +H+ T
Sbjct: 334 GDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEAT 393
Query: 377 AVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
+ISLLQPAPET++LFDDIILLS+GQIVYQGPR+ +LEFFES GFKCP+RKG ADFLQEV
Sbjct: 394 VLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFLQEV 453
Query: 437 TSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKV 496
TSKKDQEQYW +RPYR++ V EF ++F+ FHVG KLS+EL P+DKSKSH+AAL
Sbjct: 454 TSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALMFDK 513
Query: 497 YGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGI 556
Y + K ELLK+C +E +LMKRNSF Y+FK +QI I + TL+ RT+MH + D I
Sbjct: 514 YSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEIDANI 573
Query: 557 YAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEP 616
Y G+L F +++ +F+G AE++MTI +LPVFYKQRD F PPW Y +P+++L IPIS E
Sbjct: 574 YVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISIFES 633
Query: 617 AVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXX 676
W+ ++YY IGY P+A RFFKQ+L++ QM +G+FRF+ + R + +A T
Sbjct: 634 TAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVLVLL 693
Query: 677 XXXXXXXXXXXREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSW-KKFTPTSTESLGVQ 735
R E+ WW+WAYW SP+ YA N I NE W K + ST LG
Sbjct: 694 VVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRWMNKMSGNSTTRLGTS 753
Query: 736 VLESREFFAHAYWYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEEFESDEQDN 795
VL + F WYW N F LALT+L+ K +A++ +E E +E
Sbjct: 754 VLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKE-EDEEAKG 812
Query: 796 RIG 798
+ G
Sbjct: 813 KAG 815
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1824 (647.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 356/765 (46%), Positives = 486/765 (63%)
Query: 36 EDDEEALKWAAIEKLP-----TYNRLKKGLLTTSQGEAFE-------VDVSNLGLQERQR 83
E DEE L+WAAI +LP T+N + + T +Q + +DV L +R+
Sbjct: 32 EQDEEDLRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNVVQTIDVKKLDRADREM 91
Query: 84 LINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKF 143
L+ + + ++ DN K L +K R++RVG+ +P +EVRFE+L IEA+ ++ALP+
Sbjct: 92 LVRQALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEADVQAGTRALPTLVNV 151
Query: 144 FTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXD 203
FE L+ L I+ K L ILKD+SGI+KPGR+TLLLGPP D
Sbjct: 152 SRDFFERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKSTLLLALAGKLD 211
Query: 204 PSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYE-M 262
SLK +G +TYNG N+++F +RT+AYISQ DNHI E+TVRETL FAARCQG +
Sbjct: 212 KSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARCQGASEGFAGY 271
Query: 263 LTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322
+ +L+R EK GI+P +ID FMKAAS +GE+ +V TDY LKVLGLD+C+DTMVG++M R
Sbjct: 272 MKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCSDTMVGNDMMR 331
Query: 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLL 382
GVSGGQ+KRVTTGEM VGP LFMDEISTGLDSSTTFQIV C + +H+ T +++LL
Sbjct: 332 GVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHLMDATVLMALL 391
Query: 383 QPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQ 442
QPAPET++LFDD+ILLS+G +VYQGPRE V+ FFES+GF+ P RKGVADFLQEVTSKKDQ
Sbjct: 392 QPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADFLQEVTSKKDQ 451
Query: 443 EQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKR 502
QYWA +PY+F+ V + AAF++ G +L PFDK + +AL + +
Sbjct: 452 AQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSALCRTKFAISGW 511
Query: 503 ELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALF 562
E LK C RELLL+KR+ F+Y F+ Q+G + LV T+F +T++H S G Y LF
Sbjct: 512 ENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQFGNEYLSCLF 571
Query: 563 FTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFL 622
F +V +F+GF+E+ + I +LPVFYKQRD F P W+++I SW+L++P S LE VW +
Sbjct: 572 FGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYSVLEAVVWSGV 631
Query: 623 SYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXX 682
Y+ +G P+AGRFF+ LLL + +QM GLFR + ++ R++V+A T
Sbjct: 632 VYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVIANTFGSAAILIVFLLG 691
Query: 683 XXXXXREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQVLESREF 742
+ ++K WW W +W SP+ Y Q I NEF W + S ++G+ +L+ R F
Sbjct: 692 GFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTPSAISDTTIGLNLLKLRSF 751
Query: 743 FAHAYWYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEE 787
+ YWYW N LAL +LN K RAV+ ++
Sbjct: 752 PTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLRKARAVVLDD 796
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2051 (727.0 bits), Expect = 3.4e-212, P = 3.4e-212
Identities = 437/942 (46%), Positives = 595/942 (63%)
Query: 30 SMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSQGEAFEVDVSNLGLQERQRLINKLV 89
S S+ ++ DEEALKWAA+EKLPT+ RL+ ++ + VDV+ LG+ +RQ+ I+ +
Sbjct: 28 SGSTIDDHDEEALKWAALEKLPTFARLRTTIIHPHEDL---VDVTKLGVDDRQKFIDSIF 84
Query: 90 TVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFE 149
VTE DNEKFL K +NRI+RV I LPTVEVRFE +TIEA + +ALP+ I E
Sbjct: 85 KVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTIEANCHIGKRALPTLPNAALNIAE 144
Query: 150 DLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDPSLKVS 209
L L + +TIL+DVSGI+KP R+TLLLGPP D SLKV+
Sbjct: 145 RGLRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDQSLKVT 204
Query: 210 GRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRR 269
GRVTYNGH ++EFVP++T+AYISQ+D H+G MTV+ETL F+ARCQGVGTRY++L+EL RR
Sbjct: 205 GRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQGVGTRYDLLSELVRR 264
Query: 270 EKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQK 329
EK AGI P+P++D+FMK+ + ++++ITDY L++LGLDIC DT+VGDEM RG+SGGQK
Sbjct: 265 EKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRILGLDICKDTVVGDEMIRGISGGQK 324
Query: 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETY 389
KRVTTGEM+VGP LFMDEISTGLDSSTT+QIV C ++ + T ++SLLQPAPET+
Sbjct: 325 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTDATVLMSLLQPAPETF 384
Query: 390 NLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHK 449
LFDDIILLS+GQIVYQGPR+ VL FFE+ GFKCP RKG ADFLQEVTS+KDQEQYWA
Sbjct: 385 ELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQEVTSRKDQEQYWADS 444
Query: 450 DRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACT 509
+PY ++ V EF F++FHVG L +L P+D+ KSH A+L K + V K +L K C
Sbjct: 445 KKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVFKKHSVPKSQLFKVCW 504
Query: 510 SRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIVMPL 569
RELLLMKRN+F YI K +QI + L+ T++ RT+M + +DG +Y GAL F++++ +
Sbjct: 505 DRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEMGTKNESDGAVYIGALMFSMIVNM 564
Query: 570 FSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGY 629
F+GFAE+++ I +LPVFYKQRD F PPW +++P+++L IPIS E VWV ++YY+IG+
Sbjct: 565 FNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIFESVVWVTITYYMIGF 624
Query: 630 DPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXXXXXRE 689
P RF K L++ QM G+FRF+ A R++++A T R
Sbjct: 625 APELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMILANTGGALVILLLFLLGGFIVPRG 684
Query: 690 EVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTS--TESLGVQVLESREFFAHAY 747
E+ KWWKWAYW SP+ Y + + NE L W P+S + SLG+ VLE + F
Sbjct: 685 EIPKWWKWAYWVSPMAYTYDALTVNEMLAPRWIN-QPSSDNSTSLGLAVLEIFDIFTDPN 743
Query: 748 WYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGTVQLSNCG 807
WYW N+ LALTFLN EK +AV+++E + ++NR N
Sbjct: 744 WYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVSKE---NTEENRA------ENGS 794
Query: 808 ESGNDNRERNSSSSLTEAEASHPKKRGMV-LPFEPYSLTFDEVVYSVDMPQQMK-LQGV- 864
+S + + +R T S V +P E E S D Q +K + GV
Sbjct: 795 KSKSIDVKRGMVLPFTPLTMSFDNVNYYVDMPKE-----MKEQGVSKDKLQLLKEVTGVF 849
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGD---IRISGYP 921
L L GVSGA + T LM V AG+ T + + G+ RISGY
Sbjct: 850 RPGVLTALMGVSGAGK----TTLMDVL-AGRKTGGYIEGDIRISGFPKRQETFARISGYC 904
Query: 922 KKQETFA-RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEV 962
++ + + +++ +++ I+S F+ + + + +R EV
Sbjct: 905 EQNDIHSPQVT--VKESLIYSAFLRLPKEVTKYEKMRFVDEV 944
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1843 (653.8 bits), Expect = 3.7e-190, P = 3.7e-190
Identities = 415/991 (41%), Positives = 580/991 (58%)
Query: 30 SMSSREEDD------EEALKWAAIEKLPTYNRLKKGLLTTSQGEAFE-----VDVSNLGL 78
S SSR E + E AL+WA I++LPT+ RL+ L+ GE E VDV+ LG
Sbjct: 7 SSSSRNEHEDGGDEAEHALQWAEIQRLPTFKRLRSSLVD-KYGEGTEKGKKVVDVTKLGA 65
Query: 79 QERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEA-FLASKAL 137
ER +I KL+ E DN K L K++ R+ERVG+ P++EVR+EHL +EA + KAL
Sbjct: 66 MERHLMIEKLIKHIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKAL 125
Query: 138 PSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXX 197
P+ +F DLL L + + + ++ IL DVSGI+ PGRLTLLLGPP
Sbjct: 126 PTLWNSLKHVFLDLLK-LSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKA 184
Query: 198 XXXXXDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVG 257
+ +LK G ++YNGH ++E VP++T+AYISQHD HI EMT RET+ F+ARCQGVG
Sbjct: 185 LSGNLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVG 244
Query: 258 TRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317
+R +++ E+S+REK GI PDP+ID +MKA S +G + ++ TDY LK+LGLDICA+T+VG
Sbjct: 245 SRTDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVG 304
Query: 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTA 377
+ M+RG+SGGQKKR+TT EM+VGP ALFMDEI+ GLDSST FQI+ +Q HI + T
Sbjct: 305 NAMKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATV 364
Query: 378 VISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVT 437
+SLLQPAPE+Y+LFDDI+L+++G+IVY GPR+ VL+FFE GF+CP+RKGVADFLQEV
Sbjct: 365 FVSLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVI 424
Query: 438 SKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVY 497
SKKDQ QYW H++ P+ FV V F+ +G+K+ + L P+D SK+H+ AL+ VY
Sbjct: 425 SKKDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVY 484
Query: 498 GVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIY 557
+ K EL +AC SRE LLMKRN FVY+FK Q+ ++ MT+F RT+M D + G Y
Sbjct: 485 SLPKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDID-IIHGNSY 543
Query: 558 AGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPA 617
LFF V+ L G E+SMT+ +L VFYKQ+ F+P WAYAIP+ +LKIP+SF E
Sbjct: 544 MSCLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESL 603
Query: 618 VWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXX 677
VW L+YYVIGY P RFF+Q+++L A + +FR + AI + V A T
Sbjct: 604 VWTCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLI 663
Query: 678 XXXXXXXXXXREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQVL 737
++ W KW +W +P+ YA+ G+ NEFL W+K PT+ +LG +L
Sbjct: 664 TFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQPTNV-TLGRTIL 722
Query: 738 ESREFFAHAYWYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEEFESDEQDNRI 797
ESR Y YW N F LAL+FL R +I+++ S+ Q
Sbjct: 723 ESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQ---- 778
Query: 798 GGTVQLSNCGESGNDNRERNSSSSLTEAEASH--PKKRGMVLPFEPYSLTFDEVVYSVDM 855
GT S N+ +SS E P K + + F+ + D V
Sbjct: 779 -GTKD-----SSVKKNKPLDSSIKTNEDPGKMILPFKP-LTITFQDLNYYVDVPVEMKGQ 831
Query: 856 P-QQMKLQGVPE-------DKLVLLNGVSGAFRPGVLTALMG--VSG--AGKTTLMDVLA 903
+ KLQ + E L L G+SGA + +L L G SG G+ + L
Sbjct: 832 GYNEKKLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLK 891
Query: 904 GRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVN 963
++T R+SGY ++ + + S E++ I+S ++ + + P+
Sbjct: 892 VQETFA------RVSGYCEQTDIHSP-SITVEESLIYSAWLRLVPEI--------NPQTK 936
Query: 964 SETRKMFIEEVMELVELKPLRQSLVGLPGVN 994
K +E + EL E+K + G+ G++
Sbjct: 937 IRFVKQVLETI-ELEEIKDALVGVAGVSGLS 966
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5807 | 0.9659 | 0.9527 | N/A | no |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.6779 | 0.9986 | 0.9876 | yes | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.6777 | 0.9840 | 0.9964 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6648 | 0.9854 | 0.9854 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.7066 | 0.9777 | 0.9825 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.6917 | 0.9812 | 0.9846 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.6772 | 0.9986 | 0.9876 | N/A | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5289 | 0.9750 | 0.9709 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00032575001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (1435 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1441 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-100 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-98 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-73 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-68 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-55 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-53 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 1e-51 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-45 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-44 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 6e-44 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 5e-40 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-37 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 6e-37 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-34 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-33 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-31 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-29 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-29 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-28 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-27 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 1e-24 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-24 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 8e-24 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-23 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-22 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-22 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 9e-22 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-21 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 4e-21 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 9e-21 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 9e-21 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-20 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-20 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-20 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 7e-20 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-19 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-19 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-19 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 4e-19 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 5e-19 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 6e-19 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-18 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-18 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-18 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 5e-18 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 7e-18 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 7e-18 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-17 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-17 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-17 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-17 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-17 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 9e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-16 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-16 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-16 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 5e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-16 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-16 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 6e-16 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 9e-16 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-15 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-15 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-15 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-15 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-15 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 7e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 7e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-15 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 8e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 8e-15 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-14 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-14 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-14 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-14 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-14 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-14 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-14 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 5e-14 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 8e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 8e-14 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 8e-14 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 9e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 9e-14 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-13 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-13 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-13 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-13 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-13 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-13 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-13 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 5e-13 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 6e-13 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 6e-13 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-13 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 8e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 8e-13 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 9e-13 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-12 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-12 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-12 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-12 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-12 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-12 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-12 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-12 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-12 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-12 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-12 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-12 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 5e-12 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 6e-12 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 8e-12 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 9e-12 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 9e-12 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 9e-12 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 9e-12 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-11 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-11 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-11 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-11 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-11 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-11 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-11 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-11 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-11 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-11 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-11 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-11 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-11 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-11 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 6e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 7e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 9e-11 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-10 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-10 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-10 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-10 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-10 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-10 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-10 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-10 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 4e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-10 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 5e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-10 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-10 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 9e-10 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 9e-10 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-09 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-09 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-09 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-09 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-09 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-09 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-09 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-09 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-09 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-09 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-09 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-09 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-09 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-09 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-09 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 4e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-09 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-09 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 6e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 6e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 6e-09 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 7e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-09 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-08 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-08 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-08 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-08 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-08 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-08 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-08 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-08 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-08 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-08 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 5e-08 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-08 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-08 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 6e-08 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 6e-08 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 7e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 7e-08 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 7e-08 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 8e-08 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 8e-08 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 9e-08 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 9e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-08 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 9e-08 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-07 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-07 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-07 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 1e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-07 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-07 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-07 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-07 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 3e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-07 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-07 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 4e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 4e-07 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-07 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 5e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 5e-07 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 6e-07 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 6e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-07 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 7e-07 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 8e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-06 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-06 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-06 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-06 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-06 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-06 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-06 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-06 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-06 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-06 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-06 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-06 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-06 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-06 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-06 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-06 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-06 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-06 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 4e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 4e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 4e-06 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-06 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 4e-06 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 5e-06 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 6e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 6e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 7e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 7e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 7e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 8e-06 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 9e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 9e-06 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-05 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-05 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-05 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-05 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-05 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-05 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-05 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-05 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-05 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-05 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-05 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 4e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 4e-05 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 4e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-05 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 5e-05 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-05 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 5e-05 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-05 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-05 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 6e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 6e-05 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 6e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 6e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 7e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 7e-05 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 7e-05 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 8e-05 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 8e-05 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 8e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 8e-05 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 8e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 9e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 9e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 9e-05 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-04 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-04 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-04 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-04 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-04 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-04 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 2e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-04 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-04 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-04 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-04 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-04 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-04 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 3e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-04 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-04 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-04 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-04 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 4e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-04 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-04 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 5e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 5e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-04 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 5e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 6e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 6e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 6e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 6e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 7e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 7e-04 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 8e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 8e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 8e-04 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 8e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 9e-04 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 0.001 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 0.001 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 0.001 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 0.001 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.001 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.002 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 0.002 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 0.002 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 0.002 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 0.002 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 0.002 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.002 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.002 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.002 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 0.002 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 0.002 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 0.002 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.002 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 0.003 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 0.003 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 0.003 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.003 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.003 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.003 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 0.003 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 2056 bits (5329), Expect = 0.0
Identities = 867/1465 (59%), Positives = 1090/1465 (74%), Gaps = 37/1465 (2%)
Query: 11 STTSHRSHSRWRTGSVGAFSMSSRE-------EDDEEALKWAAIEKLPTYNRLKKGLLTT 63
+ RS SR FS S+ ++DEEALKWAAIEKLPTY+RL+ ++ +
Sbjct: 9 RRSISRSVSRSSRNMEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKS 68
Query: 64 --------SQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLP 115
+Q EVDV+ L +RQ+ I+ + V E DNEKFL K +NRI+RVGI LP
Sbjct: 69 FVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLP 128
Query: 116 TVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIV 175
TVEVRFEHLT+EA+ ++ S+ALP+ I E L L I + K LTILKD SGI+
Sbjct: 129 TVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGII 188
Query: 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHD 235
KP R+TLLLGPPSSGKTTLLLALAGKLDPSLKVSG +TYNG+ ++EFVP +T+AYISQ+D
Sbjct: 189 KPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQND 248
Query: 236 NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEA 295
H+G MTV+ETL F+ARCQGVGTRY++L+EL+RREK AGI P+ ++D+FMKA + EG ++
Sbjct: 249 VHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKS 308
Query: 296 NVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLD 355
++ITDY LK+LGLDIC DT+VGDEM RG+SGGQKKRVTTGEM+VGP LFMDEISTGLD
Sbjct: 309 SLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 368
Query: 356 SSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEF 415
SSTT+QIV C +Q +H+ T ++SLLQPAPET++LFDDIILLS+GQIVYQGPR+ +LEF
Sbjct: 369 SSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEF 428
Query: 416 FESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLS 475
FES GFKCP+RKG ADFLQEVTSKKDQEQYWA +++PYR++ V EF F+SFHVG +L
Sbjct: 429 FESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLE 488
Query: 476 DELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITL 535
+EL PFDKS+SH+AAL Y V K ELLKAC +E LLMKRN+FVY+FK +QI +
Sbjct: 489 NELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAA 548
Query: 536 VYMTLFFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFF 595
+ T+F RT+MH + DG +Y GAL F++++ +F+GFAE+++ I +LPVFYKQRD F
Sbjct: 549 IASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFH 608
Query: 596 PPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFR 655
PPW + +P+++L IPIS +E VWV ++YY IG+ P A RFFKQ LL+ QM +G+FR
Sbjct: 609 PPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFR 668
Query: 656 FLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANE 715
+ ++ R +++A T G+ +L++ LGGF+L + E+ WW+WAYW SP+ Y N + NE
Sbjct: 669 LIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNE 728
Query: 716 FLGHSW-KKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFL 774
W K ++ LG VL + F WYW+G+GAL GF +L NV F LALT+L
Sbjct: 729 MFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYL 788
Query: 775 NQFEKPRAVITEEFESDEQDNRIGGTVQLSNCGESGNDNRE-------------RNSSSS 821
N K +A+I+EE + + LS+ GN+ RE +N SS
Sbjct: 789 NPLGKKQAIISEETAEEMEGEEDSIPRSLSSAD--GNNTREVAIQRMSNPEGLSKNRDSS 846
Query: 822 LTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRP 881
L A P KRGMVLPF P +++FD+V Y VDMP +MK QGV ED+L LL V+GAFRP
Sbjct: 847 LEAANGVAP-KRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRP 905
Query: 882 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHS 941
GVLTALMGVSGAGKTTLMDVLAGRKTGGYI GDIRISG+PKKQETFARISGYCEQNDIHS
Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS 965
Query: 942 PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001
P VTV ESL YSA+LRLP EV+ E + MF++EVMELVEL L+ ++VGLPGV GLSTEQR
Sbjct: 966 PQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025
Query: 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1061
KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE
Sbjct: 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1085
Query: 1062 AFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIPGVEKIKDGYNPATWMLEVSASSQEV 1121
AFDEL LMKRGG+ +Y GPLG +S +I YFEAIPGV KIK+ YNPATWMLEVS+ + EV
Sbjct: 1086 AFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV 1145
Query: 1122 ALGVDFCDIYKRSELYRRNKLLIEDLSKPAPGSKDLHFATQYSQSAFSQFMACLWKQHWS 1181
LG+DF + YK S LY+RNK L+++LS P PG+ DL+FATQYSQS + QF +CLWKQ W+
Sbjct: 1146 KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWT 1205
Query: 1182 YWRNPAYTAVRFLFTAFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCIS 1241
YWR+P Y VRF FT AL++G+IFW +G K DL+ +G+M+ A++F+G C +
Sbjct: 1206 YWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCST 1265
Query: 1242 VQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAA 1301
VQP+V VER VFYRE AAGM+S +P+A+AQ++ EIPYV +Q+ Y+ IVYAM++F+WTAA
Sbjct: 1266 VQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAA 1325
Query: 1302 KFFWYIFYMYFALLFFTLYGMTAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIW 1361
KFFW+ F +F+ L+FT YGM V++TP +A+I + F+GL+ LFSGF IPRP+IP W
Sbjct: 1326 KFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKW 1385
Query: 1362 WRWYYWANPIAWTLYGLIASQYGDVEDKIE-----TGETVKHFLRDYYGFKHSFLGAVAG 1416
W WYYW P+AWT+YGLI SQYGDVED I+ T+K +++D+YG+ F+G VA
Sbjct: 1386 WVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAA 1445
Query: 1417 VLIAFAALFGILFPLGIKQFNFQRR 1441
VL+ F F +F I+ NFQ R
Sbjct: 1446 VLVGFTVFFAFIFAFCIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1158 bits (2998), Expect = 0.0
Identities = 401/1370 (29%), Positives = 641/1370 (46%), Gaps = 128/1370 (9%)
Query: 93 EVDNEKFLLKLKNRIERVGIVLP--TVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFED 150
E + + ++ + I+ I + V +++L+ A S P+F I
Sbjct: 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVA-ADSDYQPTFPNALLKILTR 60
Query: 151 LLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLK-VS 209
L K ILK + G++KPG LT++LG P SG +TLL +A D V
Sbjct: 61 GFRKL-KKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVE 119
Query: 210 GRVTYNGHNMDEFVPERTA--AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELS 267
G +TY+G +E Y ++ D H +TV ETL FAARC+ R + ++
Sbjct: 120 GVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREE 179
Query: 268 RREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGG 327
+ I D Y+ GL +T VG++ RGVSGG
Sbjct: 180 YAKH--------------------------IADVYMATYGLSHTRNTKVGNDFVRGVSGG 213
Query: 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPE 387
++KRV+ E +G A D + GLDS+T + + K + +I T ++++ Q + +
Sbjct: 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQD 273
Query: 388 TYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWA 447
Y LFD +I+L +G +Y GP + ++FE MGFKCP R+ ADFL +TS + Q
Sbjct: 274 AYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIKP 332
Query: 448 -HKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDK---------------SKSHRAA 491
++ + R QEF +++ +L E+ D+ +K +
Sbjct: 333 GYEKKVPR--TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRT 390
Query: 492 LTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSV 551
+ Y V +K C +R L MK N +F + + L+ ++F+ +
Sbjct: 391 RPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NT 447
Query: 552 TDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPI 611
+D GALFF I+ FS EI+ P+ K R + + P A AI S I +IP
Sbjct: 448 SDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPF 507
Query: 612 SFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFG 671
+E V+ + Y+++ + AGRFF L+L +S LFR +GA+ + L A T
Sbjct: 508 KIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPA 567
Query: 672 SFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSW--KKFTPTS- 728
+ +L L GF + R + W KW Y+ +P+ YA ++ NEF G + ++ P+
Sbjct: 568 AILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGG 627
Query: 729 -TESLGVQ--------------VLESREFFAHAY-----WYWLGLGALFGFILLLNVGFA 768
++LGV ++ ++ ++ W G + GF + +
Sbjct: 628 GYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYI 687
Query: 769 LALTFLNQFEKPRAVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEAS 828
L F ++ ++ G+ R + + T A
Sbjct: 688 LLTEFNKGAKQKGEILVF---------------------RRGSLKRAKKAGE--TSASNK 724
Query: 829 HPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKL-----------QGVPEDKLVLLNGVSG 877
+ + G VL + D+V DM ++ + ++K V+LN V G
Sbjct: 725 NDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDG 784
Query: 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQN 937
+PG LTALMG SGAGKTTL++VLA R T G ITG R+ +F R GY +Q
Sbjct: 785 WVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQ 844
Query: 938 DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997
D+H P TV ESL +SA+LR P V+ + ++EEV++L+E++ ++VG+PG GL+
Sbjct: 845 DLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLN 903
Query: 998 TEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1056
EQRKRLTI VELVA P ++F+DEPTSGLD++ A + + +R D G+ ++CTIHQPS
Sbjct: 904 VEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPS 963
Query: 1057 IDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIPGVEKIKDGYNPATWMLEVSA 1116
+FE FD L L+++GG+ VY G LG +S +I+YFE G K + NPA WMLEV
Sbjct: 964 AILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPAEWMLEVIG 1022
Query: 1117 SSQEVALGVDFCDIYKRSELYRRNKLLIEDLSKPAPGSKDLHFAT---QYSQSAFSQFMA 1173
++ D+ ++++ S Y+ K ++ L ++D + +Y+ S + QF
Sbjct: 1023 AAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKL 1082
Query: 1174 CLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIF 1233
LW+ YWR P Y +F T F AL +G F+ +G Q L N M ++F A +
Sbjct: 1083 VLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSL---QGLQNQMFAVFMATVL 1139
Query: 1234 LGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAM 1293
+ P V + RE + FS + + AQI +EIPY V I+ I Y
Sbjct: 1140 FNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYP 1199
Query: 1294 MSFDWTAAK-------FFWYIFYMYFALLFFTLYGMTAVAVTPTHHIASIVSTLFFGLWL 1346
+ F W A+K + L+F+ G ++ P A+++++L F + L
Sbjct: 1200 VGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCL 1259
Query: 1347 LFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIASQYGDVEDKIETGETV 1396
F G + P R+P +W + Y +P + + L+++ DV + E +
Sbjct: 1260 SFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELL 1309
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 335 bits (861), Expect = e-100
Identities = 174/581 (29%), Positives = 285/581 (49%), Gaps = 37/581 (6%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGDIRISGYPKKQETFAR 929
LL VSG +PG L A+MG SGAGKTTLM+ LA R G +G + ++G P +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
IS Y +Q+D+ P +TV E L + A LR+P V + ++ ++EV++ + L+ + +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 990 LPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1048
+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 1049 VCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIPGVEKIKDGYNPA 1108
+CTIHQPS ++FE FD++ LM GR Y+G + S + YNPA
Sbjct: 220 ICTIHQPSSELFELFDKIILMA-EGRVAYLGS-PDQAVPFFSDLGH-----PCPENYNPA 272
Query: 1109 TWMLEVSA-------SSQEVALGVDFCDIYKRSELYRRNKLLIEDLSKPAPG---SKDLH 1158
+ ++V A S+E + CD + S++ R + S A G +
Sbjct: 273 DFYVQVLAVIPGSENESRERIEKI--CDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENM 330
Query: 1159 FATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGGKTEKRQ 1218
Y+ S ++QF A L + S R+P VR + T A+L+G I+ G + Q
Sbjct: 331 EGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQ 390
Query: 1219 DLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPY 1278
+++ G++F L + F+ V V E VF RE +G++ + LA+ + E+P
Sbjct: 391 NIN---GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPL 447
Query: 1279 VFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPTHHIASIVS 1338
+ +++SI Y M+ A F ++F + T +G + +A V
Sbjct: 448 FIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVG 507
Query: 1339 TLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLY---GLIASQYGDVEDKIETGET 1395
F +LLF GF I IP++++W + ++W Y GL+ +Q+ DV++ T
Sbjct: 508 PPFVIPFLLFGGFFINSDSIPVYFKWLSY---LSWFRYGNEGLLINQWSDVDNIECTSAN 564
Query: 1396 VKHF-------LRDYYGFKHSFLGAVAGVLIAFAALFGILF 1429
+ + F+++ L L+ F +L
Sbjct: 565 TTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLA 605
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 313 bits (804), Expect = 1e-98
Identities = 113/239 (47%), Positives = 142/239 (59%), Gaps = 47/239 (19%)
Query: 841 PYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 900
LT+ + Y+V + K LLN +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKGG---------KRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 901 VLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP 960
VLAGRKT G ITG+I I+G P + F R +GY EQ D+HSP +TV E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 961 EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 1021 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD L L+KRGG+ VY G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 241 bits (618), Expect = 3e-73
Identities = 96/237 (40%), Positives = 139/237 (58%), Gaps = 45/237 (18%)
Query: 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 902
+L+F + +V + LL VSG +PG LTA+MG SGAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 903 AGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEV 962
AGR+TG ++G++ I+G P + +F +I GY Q+DI P +TV E+L ++A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 963 NSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1022
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 1023 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
TSGLD+ +A VM +R DTGRT++C+IHQPS +IFE FD+L L+ + GR +Y G
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 242 bits (619), Expect = 3e-68
Identities = 159/644 (24%), Positives = 273/644 (42%), Gaps = 70/644 (10%)
Query: 146 TIFEDLLNYLHILPSTKKH-LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP 204
++ L++ L ++ +LK+VSG+ KPG L ++G +GKTTL+ ALA +
Sbjct: 18 GSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPK 77
Query: 205 SLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLT 264
+K SG V NG +D +AY+ Q D I +TVRE L F A M
Sbjct: 78 GVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQA-------HLRMPR 130
Query: 265 ELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR-RG 323
++++EK + V+ LGL CA+T +G R +G
Sbjct: 131 RVTKKEKRERVD-------------------EVLQA-----LGLRKCANTRIGVPGRVKG 166
Query: 324 VSGGQKKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLL 382
+SGG++KR+ E++ P L LF DE ++GLDS + +V K + T + ++
Sbjct: 167 LSGGERKRLAFASELLTDPPL-LFCDEPTSGLDSFMAYSVVQVLK-GLAQKGKTIICTIH 224
Query: 383 QPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQ 442
QP+ E + LFD IIL+++G++ Y G + + FF +G CP+ ADF +V +
Sbjct: 225 QPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLA---V 281
Query: 443 EQYWAHKDRPYRFVKVQEF----------VAAFQSFHVGQKLSDELQTPFDKSKSHRAAL 492
++ R F V L + + + + A+
Sbjct: 282 IPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENM--EGIGYNASW 339
Query: 493 TTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVT 552
T+ Y + KR L LL + +LIQ ++ ++ + + V
Sbjct: 340 WTQFYALLKRSWLSVLRDPLLLKV---------RLIQTMMTAILIGLIYLGQGLTQKGVQ 390
Query: 553 DGGIYAGALFFTIVMPLFSG-FAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPI 611
+ GALF + F F I++ +LPVF ++ + AY + I ++P+
Sbjct: 391 NIN---GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPL 447
Query: 612 SFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFG 671
+ PA++ ++Y++IG A F L+ + + + + +A T G
Sbjct: 448 FIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVG 507
Query: 672 SFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTE- 730
V+ L GGF ++ + + ++KW + S Y G+L N++ + T +T
Sbjct: 508 PPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTG 567
Query: 731 ---SLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALAL 771
S G +LE+ F +L L L I + AL
Sbjct: 568 PCPSSGEVILETLSFRNAD--LYLDLIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 3e-55
Identities = 82/211 (38%), Positives = 125/211 (59%), Gaps = 8/211 (3%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GDIRISGYPKKQETFAR 929
+LN VS G + A++G SG+GKTTL+D ++GR GG T G I +G P+K + F +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIE-EVMELVELKPLRQSLV 988
Y Q+DI P +TV E+L Y+A LRLP + + RK +E ++ + L + +LV
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV 141
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1048
G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R V
Sbjct: 142 K-----GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIV 196
Query: 1049 VCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
+ TIHQP D+F FD + L+ G VY G
Sbjct: 197 ILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 5e-53
Identities = 154/635 (24%), Positives = 272/635 (42%), Gaps = 100/635 (15%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGDIRISGYP----KK 923
+L + G +PG LT ++G G+G +TL+ +A T G+ + G I G KK
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAS-NTDGFHIGVEGVITYDGITPEEIKK 134
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP-EVNSETRKMFIEEVMELVE--- 979
+ Y + D+H P +TV E+L ++A + P + +R+ + + + ++
Sbjct: 135 HYRGDVV--YNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATY 192
Query: 980 -LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA---AIVM 1035
L R + VG V G+S +RKR++IA + I D T GLD+ A +
Sbjct: 193 GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL 252
Query: 1036 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAI 1095
+T N +DT T + I+Q S D +E FD++ ++ G ++Y GP + YFE +
Sbjct: 253 KTSANILDT--TPLVAIYQCSQDAYELFDKVIVLYEG-YQIYFGP----ADKAKQYFEKM 305
Query: 1096 -------------------PGVEKIKDGYN---PAT-------WML--EVSASSQEVALG 1124
P +IK GY P T W E + +E+
Sbjct: 306 GFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEY 365
Query: 1125 VDFCDIYKRSELYRRNKLLIEDLSKPAPGSKDLHFATQYSQSAFSQFMACLWKQHWSYWR 1184
+D C E YR S A SK ++ Y+ S Q CL +
Sbjct: 366 LDRCSESDTKEAYRE--------SHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKG 417
Query: 1185 NPAYTAVRFLFTAFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQP 1244
NP++T +AL+L S+F++L T D + G++F A++F F +
Sbjct: 418 NPSFTLFMVFGNIIMALILSSVFYNLPKNTS---DFYSRGGALFFAILFNAFS-SLLEIA 473
Query: 1245 VVFVERMVFYREVAAGMFSGIPWA--LAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAK 1302
++ R + + ++ P A +A I+ EIP+ ++S++++ I+Y M++F TA +
Sbjct: 474 SMYEARPIVEKHRKYALYH--PSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGR 531
Query: 1303 FFWYIFYMYFALLFFTLYGMTAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWW 1362
FF+Y+ ++ L + + AVT T A + + +++GF IPRP + W
Sbjct: 532 FFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWS 591
Query: 1363 RWYYWANPIAWTLYGLIASQ-------------YGDVEDKIETGETV------------- 1396
+W Y+ NP+A+ L+ ++ G D + V
Sbjct: 592 KWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYV 651
Query: 1397 --KHFLRDYYGFKHSFLGAVAGVLIAFAALFGILF 1429
+L+ + + +S G++I F F ++
Sbjct: 652 DGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVY 686
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 1e-51
Identities = 61/215 (28%), Positives = 109/215 (50%), Gaps = 7/215 (3%)
Query: 1170 QFMACLWKQHWSYWRNPAYT-AVRFLFTAFIALLLGSIFWDLGGKTEKRQDLSNAMGSMF 1228
Q A L ++ WR+P+ R + +AL+ G++F +L N G +F
Sbjct: 2 QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTS----LGGLNRPGLLF 57
Query: 1229 TALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSS 1288
+++F F + PV ER V RE+A+ ++S + LA+I++E+P +Q++I+
Sbjct: 58 FSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLL 117
Query: 1289 IVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPTHHIASIVSTLFFGLWLLF 1348
IVY M+ + +FF ++ + L + G+ A+ P+ AS + L LL
Sbjct: 118 IVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLL 175
Query: 1349 SGFIIPRPRIPIWWRWYYWANPIAWTLYGLIASQY 1383
SGF IP +P W +W Y+ NP+ + + L A+++
Sbjct: 176 SGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 1e-45
Identities = 146/547 (26%), Positives = 260/547 (47%), Gaps = 63/547 (11%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARI 930
+LNGV+G PG + A++G SG+GK+TL++ LAGR G TG I + ++ R
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT 142
Query: 931 SGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGL 990
G+ Q+DI P +TV E+L + + LRLP + + + + E V+ + L +++G
Sbjct: 143 -GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN 201
Query: 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1050
+ G+S +RKR++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V
Sbjct: 202 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT 261
Query: 1051 TIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIPGVEKIKDGYNPATW 1110
++HQPS +++ FD + ++ GR ++ G G + ++YFE++ NPA +
Sbjct: 262 SMHQPSSRVYQMFDSVLVLSE-GRCLFFGK-GSDA---MAYFESVGFSPSFP--MNPADF 314
Query: 1111 MLEVS---------------------ASSQEVALGVDFCDIYKRSELYRRNKLLIEDLSK 1149
+L+++ +S L + S + N + S
Sbjct: 315 LLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSAST 374
Query: 1150 PAPGSKD-LHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFW 1208
S D + +T ++Q FS + K+ ++ ++ +R ALL G ++W
Sbjct: 375 KEHRSSDRISISTWFNQ--FSILLQRSLKER----KHESFNTLRVFQVIAAALLAGLMWW 428
Query: 1209 DLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQP---VVFV---ERMVFYREVAAGMF 1262
+D+ + +G +F IF G V P VFV ER +F +E A+GM+
Sbjct: 429 H-----SDFRDVQDRLGLLFFISIFWG------VFPSFNSVFVFPQERAIFVKERASGMY 477
Query: 1263 SGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGM 1322
+ + +A+I+ ++P + I+ ++ Y M F + + +L G+
Sbjct: 478 TLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGL 537
Query: 1323 TAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPR-PRIPIWWRWYYWANPIAWTLYG---L 1378
A AS + T+ ++L GF + + P W ++ I+ T Y L
Sbjct: 538 ALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKY------ISTTFYSYRLL 591
Query: 1379 IASQYGD 1385
I QYG+
Sbjct: 592 INVQYGE 598
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 2e-44
Identities = 65/217 (29%), Positives = 102/217 (47%), Gaps = 13/217 (5%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP--KKQ 924
L+GVS PG + L+G +GAGKTTL+ +LAG +G+I + GY K+
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEP 73
Query: 925 ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
R GY Q P +TV E+L + A L + +E R IEE++EL L+
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKA 130
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R
Sbjct: 131 NKKVR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185
Query: 1045 GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081
G + + E D + ++ G+ + G
Sbjct: 186 GGVTILLSTHILEEAEELCDRVIILND-GKIIAEGTP 221
|
Length = 293 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 6e-44
Identities = 64/216 (29%), Positives = 107/216 (49%), Gaps = 8/216 (3%)
Query: 503 ELLKACTSRELLLMKRNSFV-YIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGAL 561
LKA RE L R+ + +++LIQ + LV+ T+F D+ G G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLL 56
Query: 562 FFTIVMPLFSGFAEISMTIVK-LPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWV 620
FF+I+ FS IS ++ V ++ + P AY + ++++PIS L+ +++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 621 FLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLA 680
+ Y+++G + RFF L+LL SGL F+ A+ + A G +L LL
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 681 LGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEF 716
L GF + + + W +W Y+ +P+ YA + ANEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 5e-40
Identities = 73/246 (29%), Positives = 122/246 (49%), Gaps = 38/246 (15%)
Query: 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF 222
K+ IL DVS V+ G++ +LG SGKTTLL A++G+++ SG++ +NG
Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
++ AY+ Q D + +TVRETL + A R+ + I+ D
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAIL------------RLPRKSSDAIRKKRVED 125
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG-EMMVGP 341
V ++ A T +G + +G+SGG+++RV+ +++ P
Sbjct: 126 VLLRD-----------------------LALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401
+ L +DE ++GLDS T +V+ Q N ++++ QP + + LFD I+LLS G
Sbjct: 163 KV-LILDEPTSGLDSFTALNLVSTLSQLARRNR-IVILTIHQPRSDLFRLFDRILLLSSG 220
Query: 402 QIVYQG 407
+IVY G
Sbjct: 221 EIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (395), Expect = 4e-39
Identities = 137/529 (25%), Positives = 249/529 (47%), Gaps = 54/529 (10%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
TIL V+G+ PG + +LGP SGK+TLL ALAG++ + +G + N + + +
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILK 140
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
RT +++Q D +TVRETL F + + + L+++EK +
Sbjct: 141 RTG-FVTQDDILYPHLTVRETLVFCSLLR-------LPKSLTKQEK-------------I 179
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG-EMMVGPALA 344
A + VI++ LGL C +T++G+ RG+SGG++KRV+ EM++ P+L
Sbjct: 180 LVAES------VISE-----LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL- 227
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404
L +DE ++GLD++ +++V T V S+ QP+ Y +FD +++LS+G+ +
Sbjct: 228 LILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286
Query: 405 YQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAA 464
+ G + +FES+GF ADFL ++ + Q + +++P VK Q VA+
Sbjct: 287 FFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPN--VK-QSLVAS 343
Query: 465 FQSFHVGQ-KLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVY 523
+ + + K + E+ + + +TK + R + ++ +L++R+
Sbjct: 344 YNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKER 403
Query: 524 IFKLIQIGSITLVYMTLFFRTKM--HKD--SVTDGGIYAGALFFTIVMPLFSGFAEISMT 579
+ + V M H D V D G LFF + +F G +
Sbjct: 404 KHESFNTLRVFQVIAAALLAGLMWWHSDFRDVQD---RLGLLFF---ISIFWGVFPSFNS 457
Query: 580 IVKLP----VFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGR 635
+ P +F K+R + +Y + + +P+ + P +++ ++Y++ G P G
Sbjct: 458 VFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGA 517
Query: 636 FFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGF 684
F L+LL + + GL LGA + A T + +L + GGF
Sbjct: 518 FLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGF 566
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 2e-37
Identities = 81/294 (27%), Positives = 131/294 (44%), Gaps = 51/294 (17%)
Query: 160 STKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM 219
T L VS V+PG + LLGP +GKTTLL LAG L P+ SG + G+++
Sbjct: 13 KYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDV 69
Query: 220 DEFVPE--RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP 277
+ + R Y+ Q + E+TVRE L F AR G+
Sbjct: 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS-------------------- 109
Query: 278 DPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM 337
EEA + L++ GL+ A+ V R +SGG K+R++
Sbjct: 110 --------------KEEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALA 150
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVIS--LLQPAPETYNLFDDI 395
++ L +DE ++GLD + +I ++ T ++S +L+ E L D +
Sbjct: 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRV 207
Query: 396 ILLSDGQIVYQGPRELVLEFFESMGFKC--PKRKGVADFLQEVTSKKDQEQYWA 447
I+L+DG+I+ +G E + E F G P+R +A+ L+ + K +E+
Sbjct: 208 IILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 6e-37
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGT 376
G+E RG+SGG++KRV+ E +V A L D + GLDSST +I+ C + + T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 377 AVISLLQPAPETYNLFDDIILLSDGQIVYQG 407
+SL Q + E Y+LFD +++L +G+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 1e-34
Identities = 44/93 (47%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-- 222
+ ILKD SG+VKPG + L+LG P SG +TLL ALA + + ++ V G + YNG EF
Sbjct: 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAE 79
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFAARCQG 255
Y+S+ D H +TVRETL FA RC+G
Sbjct: 80 KYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 4e-33
Identities = 61/219 (27%), Positives = 105/219 (47%), Gaps = 38/219 (17%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGDIRISGYPKK 923
K+ +L SG +PG + ++G G+G +TL+ LA R T G + GDI +G P K
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYK 75
Query: 924 Q--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
+ E + Y + D+H P +TV E+L ++ +
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------ 111
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
G V G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R
Sbjct: 112 -------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 1042 VD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
D T +++Q S +I++ FD++ ++ GR++Y G
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-31
Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 20/206 (9%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFA- 928
++ +S G + L+G +GAGKTT + +L G R T +G I+GY + + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 929 -RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
+ GYC Q D +TV E L + A L+ + K +E ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKR 130
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 1048 VVCTIHQPSIDIFEAF-DELFLMKRG 1072
++ T H S+D EA D + +M G
Sbjct: 185 IILTTH--SMDEAEALCDRIAIMSDG 208
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-29
Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 146 TIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS 205
T+ L +K +LK+VSG KPG LT ++GP +GK+TLL ALAG+
Sbjct: 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTG- 61
Query: 206 LKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGV 256
L VSG V NG +D+ + Y+ Q D +TVRETL FAA+ +G+
Sbjct: 62 LGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-29
Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 15/208 (7%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP--KKQ 924
K L+GVS PG+ L+G +GAGKTTLM +LA G IRI G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLKQP 67
Query: 925 ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
+ R GY Q P TV E L Y AWL+ + S+ K ++EV+ELV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
+ +G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 1045 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
R V+ + H D+ +++ ++ +G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-28
Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 23/216 (10%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924
P+ L+ +S + G ++G +G+GK+TL+ +L G G +G++ + G +
Sbjct: 10 PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTK 67
Query: 925 ET---FARISGYCEQNDIHSP---FV--TVYESLFYSAWLRLPPEVNSETRKMFIEEVME 976
+ R G QN P F TV E + + PE E R +EE +E
Sbjct: 68 LSLKELRRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALE 120
Query: 977 LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
LV L+ LR LS Q++R+ IA L +P I+ +DEPT+GLD ++
Sbjct: 121 LVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE 175
Query: 1037 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
++ G+T++ H + E D + +++ G
Sbjct: 176 LLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 5e-27
Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 59/203 (29%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR 929
L+ VS + G + AL+G +G+GK+TL+ +AG +G+I I G +
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAK----- 65
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
+ L+ LR+ +
Sbjct: 66 ------------------------------------------------LPLEELRRRIGY 77
Query: 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
+P LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+
Sbjct: 78 VPQ---LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVI 134
Query: 1050 CTIHQPSIDIFEAFDELFLMKRG 1072
H P A D + ++K G
Sbjct: 135 IVTHDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 1e-24
Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 721 WKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKP 780
W K S E+LG VL+SR F AYWYW+G+GAL GF +L N+ F LALT+LN K
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 781 RAVI 784
+A++
Sbjct: 61 QAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 5e-24
Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 31/217 (14%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG-----YPKKQ 924
+L+ +S + G +T ++G +G+GK+TL+ LAG +G++ + G K+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKE 73
Query: 925 ETFARISGYCEQNDIHSPFVTVYESLF-----YSAWLRLPPEVNSETRKMFIEEVMELVE 979
A+ Y Q+ +TVYE + + P S+ + +EE +EL+
Sbjct: 74 --LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRP----SKEDEEIVEEALELLG 127
Query: 980 LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
L+ L V+ LS +R+R+ IA L I+ +DEPTS LD V+ +R
Sbjct: 128 LEHLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLR 182
Query: 1040 N-TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1072
+ + G TVV +H D+ A D L L+K G
Sbjct: 183 DLNREKGLTVVMVLH----DLNLAARYADHLILLKDG 215
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 8e-24
Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 25/210 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L VS +PG A++G +GAGK+TL+ + G + T +G IR+ G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 930 ISGYCEQN---DIHSPFVTVYE----SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
I GY Q D P ++V + L+ L S+ K ++E +E V L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRL---SKADKAKVDEALERVGLSE 124
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1042
L +G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R
Sbjct: 125 LADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR 179
Query: 1043 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
G T++ H + + E FD + L+ R
Sbjct: 180 REGMTILVVTHDLGL-VLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 4e-23
Identities = 54/212 (25%), Positives = 97/212 (45%), Gaps = 25/212 (11%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARI 930
+L +S + G +TAL+G +GAGK+TL+ + G +G+I+I G P ++
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLR 76
Query: 931 SGYCEQNDIHSPF-----VTVYE-----SLFYSAWLRLPPEVNSETRKMFIEEVMELVEL 980
GY Q S +TV + W R N + ++ ++E +E V +
Sbjct: 77 IGYVPQ---KSSVDRSFPITVKDVVLLGRYGKKGWFRRL---NKKDKEK-VDEALERVGM 129
Query: 981 KPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
+ LR +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 130 EDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE 184
Query: 1041 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
G+TV+ H + + FD + + R
Sbjct: 185 LRQEGKTVLMVTHDLGL-VMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 1e-22
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 49/211 (23%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKK 923
+L+ +S + G + ++G +GAGK+TL+ LAG + + G I ++ K
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
+ AR Y Q +EL+ L L
Sbjct: 70 E--LARKIAYVPQ-------------------------------------ALELLGLAHL 90
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
N LS +R+R+ +A L P I+ +DEPTS LD ++ +R
Sbjct: 91 ADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145
Query: 1044 -TGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073
G+TVV +H ++ D + L+K G
Sbjct: 146 ERGKTVVMVLHDLNL-AARYADRVILLKDGR 175
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 1e-22
Identities = 66/219 (30%), Positives = 101/219 (46%), Gaps = 32/219 (14%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQ 924
K+ L GVS + G A++G SG+GK+TL+++L G R T G + IS +K+
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 925 ETFAR---ISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE 979
R I G+ Q+ + P +T E++ LP + +K E EL+E
Sbjct: 76 LAAFRRRHI-GFVFQS--FNLLPDLTALENV------ELPLLLAGVPKKERRERAEELLE 126
Query: 980 LKPLRQSLVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1034
VGL + LS Q++R+ IA L +P II DEPT LD+ V
Sbjct: 127 R-------VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 1035 MRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
M +R + G T+V H P ++ E D + ++ G
Sbjct: 180 MELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 2e-22
Identities = 46/205 (22%), Positives = 80/205 (39%), Gaps = 53/205 (25%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYP--KKQETF 927
L+ +S G + L+G +GAGKTTL+ ++ G + G +I++ G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 928 ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
R GY + +TV E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLSG--------------------------------- 98
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 99 -------G----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 1048 VVCTIHQPSIDIFEAFDELFLMKRG 1072
++ + H + D + ++ G
Sbjct: 148 ILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 9e-22
Identities = 61/215 (28%), Positives = 94/215 (43%), Gaps = 35/215 (16%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFA 928
+L+ +S G + AL G +GAGKTTL +LAG +++ G I ++G P K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERR 70
Query: 929 RISGYCEQN-DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK---PLR 984
+ GY Q+ D +V E L L+ N + + + ++L LK PL
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLG--LKELDAGNEQAET--VLKDLDLYALKERHPL- 125
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
LS Q++RL IA L++ ++ DEPTSGLD + V +R
Sbjct: 126 ----------SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175
Query: 1045 GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
G+ V+ H D FL K R + +
Sbjct: 176 GKAVIVITH----------DYEFLAKVCDRVLLLA 200
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 1e-21
Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 25/223 (11%)
Query: 859 MKLQGVPED--KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-G 913
++L+G+ + + L+ +S PG AL+G SG GKTTL+ ++AG R G I
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 914 DIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEE 973
++G P ++ R G Q+ P +TV E++ + LR P+ R + E
Sbjct: 61 GRDVTGVPPER----RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR---VRE 113
Query: 974 VMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1033
++ELV L+ L + LS Q++R+ +A L PS++ +DEP S LDA+
Sbjct: 114 LLELVGLEGLLNRY-----PHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE 168
Query: 1034 VMRTVRNT-VDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1072
+ ++ + G T + H D EA D + +M G
Sbjct: 169 LREELKELQRELGITTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 92.9 bits (232), Expect = 4e-21
Identities = 62/247 (25%), Positives = 100/247 (40%), Gaps = 62/247 (25%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
L D+S +K G L++GP SGK+TLL L G L P+ SG V +G ++ + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKE 72
Query: 226 --RTAAYISQH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
R + Q+ D+ TV E +AF G+
Sbjct: 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-------------------------- 106
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV-GP 341
EE + L+++GL+ D +SGGQK+RV ++ P
Sbjct: 107 --------PEEEIEERVEEALELVGLEGLRDRSPFT-----LSGGQKQRVAIAGVLAMDP 153
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI------SLLQPAPETYNLFDDI 395
+ L +DE + GLD + +++ K+ + G +I LL L D +
Sbjct: 154 DI-LLLDEPTAGLDPAGRRELLELLKK-LK-AEGKTIIIVTHDLDLL------LELADRV 204
Query: 396 ILLSDGQ 402
I+L DG+
Sbjct: 205 IVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 9e-21
Identities = 70/257 (27%), Positives = 110/257 (42%), Gaps = 64/257 (24%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+ D+S V G + LLG +GKTT L L G+L P+ SG NG+++ +
Sbjct: 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSI---RTD 69
Query: 226 RTAA-----YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
R AA Y Q D E+TVRE L F AR +G+
Sbjct: 70 RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGL------------------------ 105
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
E + L+VLGL A+ +SGG K++++ ++G
Sbjct: 106 ----------PKSEIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIG 150
Query: 341 -PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI----SLLQPAPETYNLFDDI 395
P++ L +DE ++GLD ++ I + + G ++I S+ E L D I
Sbjct: 151 GPSV-LLLDEPTSGLDPASRRAIWDLIL---EVRKGRSIILTTHSMD----EAEALCDRI 202
Query: 396 ILLSDGQIVYQG-PREL 411
++SDG++ G P+EL
Sbjct: 203 AIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 9e-21
Identities = 51/208 (24%), Positives = 80/208 (38%), Gaps = 53/208 (25%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
LN VS G + AL+G SG+GK+TL+ +AG G I ++ +
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
R G Q+ P +TV E++
Sbjct: 76 RRIGMVFQDFALFPHLTVLENIAL------------------------------------ 99
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 1047
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G T
Sbjct: 100 ------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGIT 153
Query: 1048 VVCTIHQPSIDIFEAF---DELFLMKRG 1072
VV H D+ EA D + +++ G
Sbjct: 154 VVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 2e-20
Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 31/230 (13%)
Query: 860 KLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIR 916
K+ G+ +K+ L V+ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 917 ISGYPKKQ--ETFARISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIE 972
++ +K+ + + G+ QN + P +TV E+ + LP + ++
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLEN------VELPLLIAGKSAGRRKR 120
Query: 973 EVMELVELKPLRQSLVGLPG------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026
EL+E ++GL + LS Q++R+ IA L+ NP II DEPT L
Sbjct: 121 AAEELLE-------VLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNL 173
Query: 1027 DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075
D++ A V+ +R + G+T++ H P ++ + D + +K G E
Sbjct: 174 DSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKIE 221
|
Length = 226 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 3e-20
Identities = 55/216 (25%), Positives = 93/216 (43%), Gaps = 19/216 (8%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE 925
+ L VS G L+G +G+GK+TL+ +L G +G++ + G E
Sbjct: 14 PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSSE 71
Query: 926 T----FARISGYCEQNDIHSPFV-TVYESLFYSA-WLRLPPEVNSETRKMFIEEVMELVE 979
+ G QN F TV + + + L LP E E + + E +ELV
Sbjct: 72 KSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPRE---EIEE-RVAEALELVG 127
Query: 980 LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
L+ L LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++
Sbjct: 128 LEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182
Query: 1040 NTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074
+ G+T++ H + E D + ++ G
Sbjct: 183 KLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKI 217
|
Length = 235 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 5e-20
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 18/195 (9%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKK 923
+L G++ A G + AL+G +GAGK+TL+ L G R G + D Y +K
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 924 QETFARIS-GYCEQN---DIHSPFVTVYESLFYSAW-LRLPPEVNSETRKMFIEEVMELV 978
R G Q+ + + V + + + L L E + + E + V
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEA---EVERR-VREALTAV 115
Query: 979 ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
LR+ LS ++KR+ IA + P ++ +DEPT+GLD ++ +
Sbjct: 116 GASGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAIL 170
Query: 1039 RNTVDTGRTVVCTIH 1053
R G TVV + H
Sbjct: 171 RRLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 7e-20
Identities = 71/256 (27%), Positives = 112/256 (43%), Gaps = 52/256 (20%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
IL D+S + G +T +LGP SGK+TLL LAG L P SG V +G ++ P+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPK 72
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
+ AY+ Q + +TV E + G P
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLL------------------------GRYP----- 103
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
+ +E I + L++LGL+ AD V + +SGG+++RV ++ A
Sbjct: 104 -HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRV-----LIARA 152
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397
LA L +DE ++ LD + +++ + ++ G V+ +L D +IL
Sbjct: 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRD-LNREKGLTVVMVLHDLNLAARYADHLIL 211
Query: 398 LSDGQIVYQGPRELVL 413
L DG+IV QG E VL
Sbjct: 212 LKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 2e-19
Identities = 33/86 (38%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISL 381
RG+SGG++KRV+ +V LF+DE ++GLDSS+ Q+++ ++ T + S+
Sbjct: 110 RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGR-TIICSI 168
Query: 382 LQPAPETYNLFDDIILLSDGQIVYQG 407
QP+ E + LFD ++LLS G+++Y G
Sbjct: 169 HQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 2e-19
Identities = 58/199 (29%), Positives = 88/199 (44%), Gaps = 32/199 (16%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYP--K 922
++GV+ R G + +G +GAGKTT + +L R T G R++GY +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVR 59
Query: 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP--------PEVNSETRKMFIEEV 974
+ R G Q + +V E L + L P+ +E R EE+
Sbjct: 60 EPRKVRRSIGIVPQ------YASVDEDL--TGRENLEMMGRLYGLPKDEAEER---AEEL 108
Query: 975 MELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1034
+EL EL VG S R+RL IA L+ P ++F+DEPT+GLD R +
Sbjct: 109 LELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI 163
Query: 1035 MRTVRNTVDTGRTVVCTIH 1053
+R + G T++ T H
Sbjct: 164 WDYIRALKEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 2e-19
Identities = 59/218 (27%), Positives = 103/218 (47%), Gaps = 29/218 (13%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK--- 922
D L+ ++ + G LTAL+G SGAGK+TL+++L G G+IR++G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDL 388
Query: 923 KQETFARISGYCEQNDIHSPFV---TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE 979
E + + + QN P++ T+ E++ L P+ + E I ++
Sbjct: 389 SPEAWRKQISWVSQN----PYLFAGTIRENI-----LLARPDASDEE----IIAALDQAG 435
Query: 980 LKPLRQSLVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1034
L GL V GLS Q +RL +A L++ S++ +DEPT+ LDA I+
Sbjct: 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495
Query: 1035 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
++ ++ +TV+ H+ D +A D + ++ G
Sbjct: 496 LQALQELAK-QKTVLVITHRLE-DAADA-DRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 3e-19
Identities = 61/224 (27%), Positives = 94/224 (41%), Gaps = 27/224 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
L VS + PG AL+G SGAGK+TL+ L G T G + I+ K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 929 RI-SGYCEQNDIHSPFVTVYE----------SLFYSAWLRLPPEVNSETRKMFIEEVMEL 977
R G Q ++V E S + S + P E E ++ +E
Sbjct: 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE---EKQRAL--AALER 131
Query: 978 VELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1037
V L LS Q++R+ IA L+ P +I DEP + LD ++ VM
Sbjct: 132 VGLLDKAYQRADQ-----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDL 186
Query: 1038 VRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
++ + G TV+ ++HQ D+ + + + + GR V+ GP
Sbjct: 187 LKRINREEGITVIVSLHQV--DLAREYADRIVGLKDGRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 4e-19
Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 16/213 (7%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGD-IRISGYPKKQET 926
++GVS +PG +T L+G +GAGKTT + +LAG G+ T D + P E
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEP--AEA 76
Query: 927 FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
R+ G+ + +T E+L Y A L + + +EE+ + + ++ L
Sbjct: 77 RRRL-GFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDR 132
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +R G+
Sbjct: 133 RVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGK 187
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
++ + H ++ D + ++ R GR VY G
Sbjct: 188 CILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 5e-19
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 5/112 (4%)
Query: 148 FEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLK 207
+++L NY +P +L ++SG VKPG LT L+G +GKTTLL LAG+ +
Sbjct: 6 WKNL-NY--TVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV- 61
Query: 208 VSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTR 259
++G + NG +D+ R+ Y+ Q D H +TVRE L F+A +G+
Sbjct: 62 ITGEILINGRPLDKNFQ-RSTGYVEQQDVHSPNLTVREALRFSALLRGLSVE 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 87.5 bits (218), Expect = 6e-19
Identities = 59/201 (29%), Positives = 87/201 (43%), Gaps = 36/201 (17%)
Query: 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQ- 924
LV L+ VS + RPG + L+G +GAGKTTL ++++G R T G + I+G P +
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 925 ------ETFARISGYCEQNDIHSPF--VTVYE--------SLFYSAWLRLPPEVNSETRK 968
TF Q F +TV E L E R+
Sbjct: 73 ARLGIGRTF--------QIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARE 122
Query: 969 MFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
EE++E V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 123 R-AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNP 176
Query: 1029 RAAAIVMRTVRNTVDTGRTVV 1049
+ +R + G TV+
Sbjct: 177 EETEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 1e-18
Identities = 62/207 (29%), Positives = 99/207 (47%), Gaps = 21/207 (10%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GDIRISGYPKKQE---T 926
L+ VS RPG AL+G +GAGK+TL +L T Y+ G I ++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 927 FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
AR+ +Q + ++V ++L Y A L + R I E++ + L
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADD 128
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1045
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 1046 RTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+V+ H +D EA D L ++ RG
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHRG 208
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 2e-18
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 16/192 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG-----YPKKQET 926
L+G++ + G L+G SGAGK+TL+ ++ + +G IR++G +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSDLRGRAIP 74
Query: 927 FARIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
+ R G Q+ P VYE++ EV + + V +EL L
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENV------AFALEVTGVPPREIRKRVPAALELVGLSH 128
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
LP LS +++R+ IA +V +P+I+ DEPT LD +M ++ G
Sbjct: 129 KHRALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186
Query: 1046 RTVVCTIHQPSI 1057
TVV H +
Sbjct: 187 TTVVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 82.8 bits (206), Expect = 4e-18
Identities = 55/211 (26%), Positives = 85/211 (40%), Gaps = 54/211 (25%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYP 921
P +L VS +PG A++G SG+GK+TL+ +L T G I + +
Sbjct: 11 PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD 70
Query: 922 KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
E+ + Y Q+ PF LF S T I E
Sbjct: 71 --LESLRKNIAYVPQD----PF------LF------------SGT----IRE-------- 94
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
N LS QR+R+ IA L+ +P I+ +DE TS LD A+++ +R
Sbjct: 95 ------------NILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA- 141
Query: 1042 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ G+TV+ H+ S D + ++ G
Sbjct: 142 LAKGKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 5e-18
Identities = 59/218 (27%), Positives = 96/218 (44%), Gaps = 33/218 (15%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGDIRISGYPKKQE 925
+L GV R G + A++G SG+GK+TL+ ++ G R G I G+ +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY 73
Query: 926 TFARISGYCEQ-----NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL 980
R G Q + + TV+E++ + LR E ++ EE+ E+V
Sbjct: 74 RLRRRMGMLFQSGALFDSL-----TVFENVAF--PLR-------EHTRLSEEEIREIVLE 119
Query: 981 KPLRQSLVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
K L VGL G LS +KR+ +A L +P ++ DEPT+GLD A+ ++
Sbjct: 120 K-LE--AVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176
Query: 1036 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+R+ G T + H F D + ++ G
Sbjct: 177 DLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDG 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 7e-18
Identities = 63/260 (24%), Positives = 106/260 (40%), Gaps = 61/260 (23%)
Query: 156 HILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYN 215
+ + LK VS ++ G ++GP SGK+TLL L G P+ SG V +
Sbjct: 8 KTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVD 64
Query: 216 GHNMDEFVPERTAA-------YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSR 268
G ++ + + AA ++ Q N + ++T E + GV + R
Sbjct: 65 GTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKK-------ER 117
Query: 269 REKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV---S 325
RE+A + L+ +GL GD + S
Sbjct: 118 RERAEEL---------------------------LERVGL--------GDRLNHYPSELS 142
Query: 326 GGQKKRVTTGE-MMVGPALALFMDEISTG-LDSSTTFQIVNCFKQNIHINSGTAVISLLQ 383
GGQ++RV + P + + DE TG LDS T +++ ++ ++ +GT ++ ++
Sbjct: 143 GGQQQRVAIARALANDPKI-ILADE-PTGNLDSETGKEVMELLRE-LNKEAGTTIV-VVT 198
Query: 384 PAPETYNLFDDIILLSDGQI 403
PE D II L DG+I
Sbjct: 199 HDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 7e-18
Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 17/185 (9%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L+ +S + G + +G +GAGKTT M ++ G + G IT Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
I E + P +T E+L A L + I+EV+++V LK + V
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKDSAKKKVK 125
Query: 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G TV+
Sbjct: 126 -----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 1050 CTIHQ 1054
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 1e-17
Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 24/209 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYP--KKQETF 927
+ GVS R G + L+G +GAGKTT + +L + T G ++G+ ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREV 71
Query: 928 ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
R G Q+ +T +E+L+ A L V R+ I+E+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1046
V S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 VK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 1047 TVVCTIHQPSIDIFEA---FDELFLMKRG 1072
T++ T H + EA D + ++ G
Sbjct: 184 TILLTTH----YMEEAEQLCDRVAIIDHG 208
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 28/231 (12%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GDIRISG 919
P K L N ++ PG A++G SGAGK+TL+ + + G I DI
Sbjct: 12 PNGKQALKN-INLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLR 70
Query: 920 YPKKQETFARISGYCEQNDIHSPFVTVYESL---------FYSAWLRLPPEVNSETRKMF 970
K ++ RI G Q+ +TV E++ + + L E + E
Sbjct: 71 GKKLRKLRRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSA 129
Query: 971 IEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
+E V L + R + LS Q++R+ IA L P +I DEP + LD +
Sbjct: 130 LERV-GLADKAYQR--------ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKT 180
Query: 1031 AAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
+ VM ++ + G TV+ +HQ +D+ + + + + + G V+ G
Sbjct: 181 SKQVMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 4e-17
Identities = 56/201 (27%), Positives = 84/201 (41%), Gaps = 33/201 (16%)
Query: 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQ- 924
L +N VS RPG + L+G +GAGKTTL +++ G + + G + I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 925 ------ETFARISGYCEQNDIHSPFVTVYESLF--------YSAWLRLPPEVNSETRKMF 970
TF Q P +TV E++ S L P E
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE 128
Query: 971 I-EEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
E++E V L L G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 129 RARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPE 183
Query: 1030 AAAIVMRTVRNTVDT-GRTVV 1049
+ +R D G T++
Sbjct: 184 ETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 4e-17
Identities = 58/245 (23%), Positives = 105/245 (42%), Gaps = 47/245 (19%)
Query: 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 902
+ F V +S P ++ L+ VS R G A++G G+GK+TL+ +L
Sbjct: 2 RIEFRNVSFSY-----------PNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLL 50
Query: 903 AGRKTGGYI--TGDIRISGYPKKQ----ETFARISGYCEQNDIHSPFVTVYESLFYSAWL 956
AG Y +G + + G +Q + I GY Q D+ + T+ +++ A
Sbjct: 51 AGL----YKPTSGSVLLDGTDIRQLDPADLRRNI-GYVPQ-DVTLFYGTLRDNITLGA-- 102
Query: 957 RLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP---------GVNGLSTEQRKRLTIA 1007
P + E ++ EL + + P GLS QR+ + +A
Sbjct: 103 ---PLADDE-------RILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALA 152
Query: 1008 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1067
L+ +P I+ +DEPTS +D + + +R + +T++ H+PS+ + D +
Sbjct: 153 RALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLL--DLVDRII 209
Query: 1068 LMKRG 1072
+M G
Sbjct: 210 VMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 4e-17
Identities = 71/262 (27%), Positives = 110/262 (41%), Gaps = 42/262 (16%)
Query: 823 TEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPG 882
T E K + LP + F+ V + P+D VL +S PG
Sbjct: 452 TPPEQEG-DKTLIHLPKLQGEIEFENVSFRYG----------PDDPPVL-EDLSLEIPPG 499
Query: 883 VLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGDIRISGYPKKQ---ETFARISGYCEQN 937
A++G SG+GK+TL+ +L G Y G I + G + R GY Q+
Sbjct: 500 EKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQD 555
Query: 938 DIHSPFVTVYESLFYSAW---LRL-PPEVNSET--RKMFIEEVMELVELKPLR-QSLVGL 990
LF + + L PE E + E +E P+ + VG
Sbjct: 556 PF----------LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE 605
Query: 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1050
G N LS QR+RL +A L++ P I+ +DE TS LD AI+++ + + GRTV+
Sbjct: 606 GGAN-LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVII 663
Query: 1051 TIHQPSIDIFEAFDELFLMKRG 1072
H+ S + D + ++ +G
Sbjct: 664 IAHRLS--TIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 5e-17
Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 29/228 (12%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKK 923
++ +S + G L+G SG GKTTL+ ++AG + + G I I+ P
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-- 73
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
R G Q+ P +TV E++ + L++ ++ K +EE +ELV L+
Sbjct: 74 --PEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGF 129
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1042
+ LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++
Sbjct: 130 ADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184
Query: 1043 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG-------GREVYVGP 1080
+ G T V H D EA D + +M G E+Y P
Sbjct: 185 ELGITFVYVTH----DQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228
|
Length = 352 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 9e-17
Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 27/224 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGD-IRISGYPKKQETFA 928
L V+ G + A++G SGAGK+TL+ L G T G I + ++I+ K+
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 929 RIS-GYCEQNDIHSPFVTVYE-----SLFYSAWLR----LPPEVNSETRKMFIEEVMELV 978
R G Q P ++V E L Y++ R L + E + ++ + +
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK---EDKAQALDALERVG 136
Query: 979 ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
L Q + LS Q++R+ IA LV P II DEP + LD +A VM +
Sbjct: 137 ILDKAYQR------ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDIL 190
Query: 1039 R--NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
+ N D G TV+ +HQ +D+ + + + + + GR V+ GP
Sbjct: 191 KDINQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 1e-16
Identities = 63/258 (24%), Positives = 105/258 (40%), Gaps = 48/258 (18%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS---LKVSGRVTYNGHNMDEFV 223
LKDVS ++ G LL+GP SGK+TLL L G L P+ + V G T + ++ E
Sbjct: 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELR 78
Query: 224 PERTAAYISQH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
+ + Q+ D+ + TV + +AF G+ R E
Sbjct: 79 --QKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL----------PREEIEE--------- 117
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT-TGEMMVGP 341
L+++GL+ D + SGGQK+RV G + +GP
Sbjct: 118 ---------------RVAEALELVGLEELLDRPPFNL-----SGGQKQRVAIAGVLAMGP 157
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401
+ L +DE + GLD +++ K+ + G +I + D +++L DG
Sbjct: 158 EI-LLLDEPTAGLDPKGRRELLELLKK-LKEEGGKTIIIVTHDLELVLEYADRVVVLDDG 215
Query: 402 QIVYQGPRELVLEFFESM 419
+I+ G + E +
Sbjct: 216 KILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-16
Identities = 62/213 (29%), Positives = 100/213 (46%), Gaps = 13/213 (6%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L+ +S + G L AL+G SGAGK+TL+ ++AG G I + R+ R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLR-LPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
G+ Q+ P +TV +++ + +R P + +EE++ LV+L+ L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR--VEELLRLVQLEGLADR-- 133
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRT 1047
P LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G T
Sbjct: 134 -YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVT 190
Query: 1048 VVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
V H + E D + ++ +G E VGP
Sbjct: 191 TVFVTHDQE-EALELADRVVVLNQGRIEQ-VGP 221
|
Length = 345 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 2e-16
Identities = 65/215 (30%), Positives = 99/215 (46%), Gaps = 35/215 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L +S + G AL+G SG GK+TL+ ++AG R T G ++ + G P R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG----EVLVDGEPVTGPGPDR 75
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
GY Q D P++TV +++ L E+ + E EL+EL VG
Sbjct: 76 --GYVFQQDALLPWLTVLDNV------ALGLELQGVPKAEARERAEELLEL-------VG 120
Query: 990 LPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 1043
L G LS R+R+ +A L +P ++ +DEP S LDA + + + +
Sbjct: 121 LSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 1044 TGRTVVCTIHQPSIDIFEAF---DELFLM-KRGGR 1074
TG+TV+ H DI EA D + ++ R GR
Sbjct: 181 TGKTVLLVTH----DIDEAVFLADRVVVLSARPGR 211
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 61/196 (31%), Positives = 92/196 (46%), Gaps = 21/196 (10%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETF 927
VL +G+S G L G +G+GKTTL+ ++AG G I D P E
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 928 ARISGYCEQNDIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
+ +N + P +TV E+L F++A+L ++ I +E V L PL
Sbjct: 76 HYLG---HRNAMK-PALTVAENLEFWAAFLG--------GEELDIAAALEAVGLAPL--- 120
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G
Sbjct: 121 -AHLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGG 178
Query: 1047 TVVCTIHQPSIDIFEA 1062
V+ H P + + A
Sbjct: 179 IVIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 3e-16
Identities = 68/273 (24%), Positives = 110/273 (40%), Gaps = 40/273 (14%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
L V+ G L+G SG GK+TL+ ++AG T G I ++ P ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLR-LPPEVNSETRKMFIEEVMELVELKPLRQSL 987
R QN P +TVYE++ + LR +P + ++EV +L+ L+ L
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR----VKEVAKLLGLEHLLNRK 130
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TG 1045
LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ + G
Sbjct: 131 P-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLG 184
Query: 1046 RTVVCTIHQPSIDIFEA---FDELFLMKRGG-------REVYVGPLGHHSCHL-ISYFEA 1094
T + H D EA D + +M G E+Y +L ++ F
Sbjct: 185 TTTIYVTH----DQVEAMTLADRIVVMNDGRIQQVGTPLELY-----ERPANLFVAGFIG 235
Query: 1095 IPGVEKIKDGYNPATWMLEVSASSQEVALGVDF 1127
P + +K L + + V
Sbjct: 236 SPPMNFLKAEVKADGNGLSIPEDKKVALEQVIL 268
|
Length = 338 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 4e-16
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 18/173 (10%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGDIRISGYPKKQETFA 928
L +S G +TAL+G SG GK+TL+ +L G G++ + G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 929 RIS-----GYCEQNDIHSPFV-TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
+ G Q +PF ++Y+++ Y L E +EE + L
Sbjct: 76 VLELRRRVGMVFQKP--NPFPGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWD 131
Query: 983 -LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1034
++ L L GLS Q++RL +A L P ++ +DEPTS LD + A +
Sbjct: 132 EVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 4e-16
Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGD-IRISGYPKKQETFARIS 931
VS G +T L+G +GAGKTTL+ ++A G +T D + P +I
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVR--RKIG 78
Query: 932 GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP 991
+ +++ +T E+L Y A L ++ + K I E+ + ++L VG
Sbjct: 79 VLFGERGLYAR-LTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-- 132
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1051
ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V+ +
Sbjct: 133 ---EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS 189
Query: 1052 IH 1053
H
Sbjct: 190 SH 191
|
Length = 245 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 5e-16
Identities = 74/257 (28%), Positives = 101/257 (39%), Gaps = 62/257 (24%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
++DVS + G +T LLG +GKTTLL +A L P SG+VT +G + T
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVD--------T 66
Query: 228 AAYISQHDNHIG----------EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP 277
S IG +T RE L + AR L LSR+E A I
Sbjct: 67 VRDPSFVRRKIGVLFGERGLYARLTARENLKYFAR----------LNGLSRKEIKARI-- 114
Query: 278 DPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM 337
A + K L L D VG S G K++V
Sbjct: 115 -----------------AELS-----KRLQLLEYLDRRVG-----EFSTGMKQKVAIARA 147
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397
+V L +DE ++GLD T + + KQ N G AVI E L D +I+
Sbjct: 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL--KNEGRAVIFSSHIMQEVEALCDRVIV 205
Query: 398 LSDGQIVYQGPRELVLE 414
L G++V +G E +
Sbjct: 206 LHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 5e-16
Identities = 67/248 (27%), Positives = 103/248 (41%), Gaps = 41/248 (16%)
Query: 822 LTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRP 881
L A K V SL F V + + L VS P
Sbjct: 301 LDAAPRPLAGKAP-VTAAPAPSLEFSGVSVAY------------PGRRPALRPVSFTVPP 347
Query: 882 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK---KQETFARISGYCEQND 938
G AL+G SGAGK+TL+++L G G I ++G P +++ + Q+
Sbjct: 348 GERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPLADADADSWRDQIAWVPQH- 404
Query: 939 IHSPFV---TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL-VGL---- 990
PF+ T+ E++ RL S+ I E +E L +L GL
Sbjct: 405 ---PFLFAGTIAENI------RLARPDASDAE---IREALERAGLDEFVAALPQGLDTPI 452
Query: 991 -PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
G GLS Q +RL +A + + ++ +DEPT+ LDA A V+ +R + GRTV+
Sbjct: 453 GEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRA-LAQGRTVL 511
Query: 1050 CTIHQPSI 1057
H+ ++
Sbjct: 512 LVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 5e-16
Identities = 62/193 (32%), Positives = 89/193 (46%), Gaps = 22/193 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGDIRISGYPKKQETFA 928
L+GVS PG A++G SG+GK+TL+ LAG G + +S Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLD--QDEVR 408
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
R C Q D H TV E+L + P+ E + +E V L ++L
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATDEE----LWAALERVGLADWLRALP 458
Query: 989 -GLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1042
GL V G LS +R+RL +A L+A+ I+ +DEPT LDA A ++ +
Sbjct: 459 DGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-A 517
Query: 1043 DTGRTVVCTIHQP 1055
+GRTVV H
Sbjct: 518 LSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 5e-16
Identities = 61/224 (27%), Positives = 102/224 (45%), Gaps = 27/224 (12%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GDIRISGYPKKQE 925
+++GV PG LT L+G +G+GK+TL+ +LAG R G + D+ G ++
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH--GLSRRAR 73
Query: 926 TFARISGYCEQNDIHSPFVTVYESL------FYSAWLRLPPEVNSETRKMFIEEVMELVE 979
AR EQ+ + +TV + + S W P + + + E
Sbjct: 74 --ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRA-----LARTE 126
Query: 980 LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
L L ++ LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 127 LSHLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVR 181
Query: 1040 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083
TG TVV +H +++ ++ + ++ GGR V GP
Sbjct: 182 ELAATGVTVVAALH--DLNLAASYCDHVVVLDGGRVVAAGPPRE 223
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 6e-16
Identities = 62/254 (24%), Positives = 109/254 (42%), Gaps = 49/254 (19%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+L+D+S V+ G +T L+GP +GK+TLL A+ G L PS SG + G + +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74
Query: 226 RTAAYISQHDNHIGE--MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
Y+ Q + +TV++ + G + L++++K
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLL-----GRYGKKGWFRRLNKKDKE----------- 118
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
+ +EA L+ +G++ D +G+ +SGGQK+RV +
Sbjct: 119 -------KVDEA-------LERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPD 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISL---LQPAPETYNLFDDIILLSD 400
L +DE TG+D + +I + K+ + G V+ + L FD +I L +
Sbjct: 160 LLLLDEPFTGVDVAGQKEIYDLLKE-LR-QEGKTVLMVTHDLGLVMA---YFDRVICL-N 213
Query: 401 GQIVYQGPRELVLE 414
++ GP E VL
Sbjct: 214 RHLIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 9e-16
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 53/257 (20%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM--DEFV 223
LKDVS + PG L+GP +GK+TLL L G ++P+ SG V +G ++ +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71
Query: 224 PERTA----AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
R I Q N I ++V E + + R T + + EK +
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENV-LSGRLGRRSTWRSLFGLFPKEEKQRAL---- 126
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE-MM 338
L+ +GL A D++ SGGQ++RV +M
Sbjct: 127 ---------------------AALERVGLLDKAYQRA-DQL----SGGQQQRVAIARALM 160
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSG-TAVISLLQPAPETYNL----FD 393
P L L DE LD +++ Q+++ K+ I+ G T ++SL Q +L D
Sbjct: 161 QQPKLIL-ADEPVASLDPASSRQVMDLLKR-INREEGITVIVSLHQV-----DLAREYAD 213
Query: 394 DIILLSDGQIVYQGPRE 410
I+ L DG+IV+ GP
Sbjct: 214 RIVGLKDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 26/215 (12%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP---KKQETF 927
LL+GVS RPG + A++G +GAGK+TL+ L+G + +G++ ++G P E
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEEL 73
Query: 928 ARISGYCEQNDIHS-PFVTVYESLFYSAWLRLPPEVNSETRK--MFIEEVMELVELKPLR 984
AR QN + PF TV E + R+P E + + + +L L
Sbjct: 74 ARHRAVLPQNSSLAFPF-TVQEVVQMG---RIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTV 1038
LS +++R+ +A L V + +F+DEPTS LD +R
Sbjct: 130 GRD-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 1039 RNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1072
R G V+ +H +++ + D + L+ +G
Sbjct: 185 RQLAREGGAVLAVLH--DLNLAAQYADRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 2e-15
Identities = 51/213 (23%), Positives = 80/213 (37%), Gaps = 57/213 (26%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPK 922
P + +L VS + PG A++G SG+GK+TL ++ G R T G +R+ G
Sbjct: 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG----RVRLDGADI 66
Query: 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE 979
Q GY Q+D ++F + E
Sbjct: 67 SQWDPNELGDHVGYLPQDD-----------------------------ELFSGSIAE--- 94
Query: 980 LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
N LS QR+RL +A L NP I+ +DEP S LD + + +
Sbjct: 95 --------------NILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA 140
Query: 1040 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
G T + H+P + D + +++ G
Sbjct: 141 ALKAAGATRIVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 57/221 (25%), Positives = 95/221 (42%), Gaps = 34/221 (15%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQ 924
+ +L ++ + G A++G SG GK+TL+ ++AG + T G + D R P
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD 73
Query: 925 ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
GY Q D P++TV +++ L E+ +++ E EL+EL
Sbjct: 74 ------IGYVFQEDALLPWLTVLDNV------ALGLELRGKSKAEARERAKELLEL---- 117
Query: 985 QSLVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
VGL G LS R+R+ IA L P ++ +DEP LDA + +
Sbjct: 118 ---VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL 174
Query: 1040 NTV-DTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGREV 1076
+T +TV+ H D+ EA D + ++ +
Sbjct: 175 RLWEETRKTVLLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 60/203 (29%), Positives = 91/203 (44%), Gaps = 37/203 (18%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGY------- 920
V+L+GV G + A++G SG+GK+TL+ ++ G R G+I I G
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD----KGEILIDGEDIPQLSE 77
Query: 921 PKKQETFARISGYCEQNDIHSPFVTVYES--LFYSAWLRLPPEVNSETRKMFIEEVMELV 978
+ E R+ G Q +TV+E+ +LP + ELV
Sbjct: 78 EELYEIRKRM-GVLFQQGALFSSLTVFENVAFPLREHTKLPES-----------LIRELV 125
Query: 979 ELKPLRQSLVGLPGVNG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
+K LVGL G LS RKR+ +A + +P ++F+DEPTSGLD +A
Sbjct: 126 LMK---LELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG 182
Query: 1033 IVMRTVRNTVDT-GRTVVCTIHQ 1054
++ +R D G TV+ H
Sbjct: 183 VIDELIRELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 3e-15
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 18/188 (9%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
+NGVS + + G + L+G +GAGKTT ++ G + G I I+ P + A
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR--A 73
Query: 929 RIS-GYCEQNDIHSPF--VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
R+ GY Q S F +TV E++ A L + ++ + R+ +EE++E + LR+
Sbjct: 74 RLGIGYLPQE--ASIFRKLTVEENI--LAVLEIR-GLSKKEREEKLEELLEEFHITHLRK 128
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
S LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 129 SKAS-----SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183
Query: 1046 RTVVCTIH 1053
V+ T H
Sbjct: 184 IGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 3e-15
Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 25/214 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGDIRISGYPKKQETF 927
L+ +S + G + L+G +GAGKTT + ++ G I +G++ G P
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 928 ARISGYCEQNDIHSPFVTVYESLFYSAWLR-LPPEVNSETRKMFIEEVMELVELKPLRQS 986
RI GY + P + V + L Y A L+ L E E R+ I+E +E +EL
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKE---EARRR-IDEWLERLELSEYANK 124
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+
Sbjct: 125 -----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179
Query: 1047 TVVCTIHQPSIDIFEAF-DELFLMKRGGREVYVG 1079
TV+ + HQ +++ E D + L+ + GR V G
Sbjct: 180 TVILSTHQ--MELVEELCDRVLLLNK-GRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 3e-15
Identities = 50/201 (24%), Positives = 89/201 (44%), Gaps = 23/201 (11%)
Query: 881 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQ---ETFARISGYCE 935
+T + G SGAGK+TL+ +AG + GG I + + +K+ R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 936 QNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG 995
Q P + V E+L + L + N E ++ ++E+++L+ L L
Sbjct: 82 QQYALFPHLNVRENLAFG----LKRKRNRE-DRISVDELLDLLGLDHLLNR-----YPAQ 131
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1054
LS +++R+ +A L A P ++ +DEP S LD ++ ++ + V+ H
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191
Query: 1055 PSIDIFEAF---DELFLMKRG 1072
S EA D + +M+ G
Sbjct: 192 LS----EAEYLADRIVVMEDG 208
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 5e-15
Identities = 71/276 (25%), Positives = 114/276 (41%), Gaps = 66/276 (23%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP- 224
+LKDV+ ++ G +LLGP GK+TLL +AG +P+ SG + +G ++ + P
Sbjct: 17 EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPE 73
Query: 225 ERTAAYISQ------HDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPD 278
+R A + Q H MTV E +AF + +GV E+ +R K
Sbjct: 74 KRGIAMVFQNYALYPH------MTVYENIAFGLKLRGVPKA-----EIDKRVKEV----- 117
Query: 279 PDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMM 338
K+LGL+ + +SGGQ++RV +
Sbjct: 118 ------------------------AKLLGLEHLLNR-----KPLQLSGGQRQRVALARAL 148
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398
V +DE + LD+ + + K +H GT I + E L D I+++
Sbjct: 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIK-KLHERLGTTTIYVTHDQVEAMTLADRIVVM 207
Query: 399 SDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
+DG+I G P EL ++ P VA F+
Sbjct: 208 NDGRIQQVGTPLEL---------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 7e-15
Identities = 62/244 (25%), Positives = 99/244 (40%), Gaps = 46/244 (18%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
L D+S V+PG LLGP GKTTLL +AG P SG + +G ++ PE
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPE 70
Query: 226 RTA-AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
R + Q +TV E +AF + +GV E+ R +
Sbjct: 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKA-----EIRARVREL----------- 114
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV-GPAL 343
L+++GL+ + +SGGQ++RV + P+L
Sbjct: 115 ------------------LELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSL 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403
L +DE + LD+ ++ K+ + G I + E L D I ++++G+I
Sbjct: 152 -LLLDEPLSALDAKLREELREELKE-LQRELGITTIYVTHDQEEALALADRIAVMNEGRI 209
Query: 404 VYQG 407
V G
Sbjct: 210 VQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 7e-15
Identities = 66/287 (22%), Positives = 108/287 (37%), Gaps = 81/287 (28%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
L D+S +K G L LLGP +GK+TLL +AG P +GR+ NG + +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFD------ 68
Query: 228 AAYISQHDNHIG----------EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP 277
+ ++ D +G MTV + +AF + + E +E R + +
Sbjct: 69 VSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-----ERPSEAEIRARVEEL-- 121
Query: 278 DPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM 337
L + + D +SGGQ++RV
Sbjct: 122 ------------------------------LRLVQLEGLADRYPAQLSGGQRQRVA---- 147
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQ---NIHINSGTAVISLLQPAPETY 389
+ ALA L +DE LD ++ ++ +H G + + E
Sbjct: 148 -LARALAVEPKVLLLDEPFGALD----AKVRKELRRWLRKLHDRLGVTTVFVTHDQEEAL 202
Query: 390 NLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
L D +++L+ G+I GP + V + P + VA FL EV
Sbjct: 203 ELADRVVVLNQGRIEQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 7e-15
Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 21/185 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
L GVS G + AL+G +GAGKTTL+ + G G I I+G P
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP----PHE 71
Query: 929 RIS---GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV-ELKPLR 984
R GY + P +TV E+L A+ R + RK +E V EL LK R
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAK-----RKARLERVYELFPRLKERR 126
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
+ L G LS +++ L IA L++ P ++ +DEP+ GL + + +R D
Sbjct: 127 KQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181
Query: 1045 GRTVV 1049
G T++
Sbjct: 182 GVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 8e-15
Identities = 67/263 (25%), Positives = 106/263 (40%), Gaps = 74/263 (28%)
Query: 160 STKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD-PSLKVSGRVTYNGHN 218
+ + LKDV+ ++ G ++GP SGK+T LL L G LD P+ SG V NG +
Sbjct: 13 LGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKST-LLNLLGGLDKPT---SGEVLINGKD 68
Query: 219 MDEFVPERTAA-------YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREK 271
+ + + A ++ Q+ N + ++TV E + G RR++
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG--------RRKR 120
Query: 272 AAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL-DICADTMVGDEMRRGVSGGQKK 330
AA + L+VLGL D E+ SGGQ++
Sbjct: 121 AA--------------------------EELLEVLGLEDRLLKKKPS-EL----SGGQQQ 149
Query: 331 RVTTGEMMVGPALA-----LFMDEISTG-LDSSTTFQIVNCFKQNIHINSGTAVI----S 380
RV + AL + DE TG LDS T +++ ++ ++ G +I
Sbjct: 150 RV-----AIARALINNPKIILADEP-TGNLDSKTAKEVLELLRE-LNKERGKTIIMVTHD 202
Query: 381 LLQPAPETYNLFDDIILLSDGQI 403
PE D +I L DG+I
Sbjct: 203 -----PELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 8e-15
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 17/192 (8%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQ 924
+ L + +S G + G +GAGKTTL+ +LAG R G + + +
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVR 70
Query: 925 ETFARISGYCEQNDIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
E++ + Y +T E+L F+ + N+ T I E + V L L
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHFWQRFHG---SGNAAT----IWEALAQVGLAGL 123
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
LP V LS Q++R+ +A ++ + +DEP + LD A++ +
Sbjct: 124 ED----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA 178
Query: 1044 TGRTVVCTIHQP 1055
G V+ T HQP
Sbjct: 179 QGGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 67/259 (25%), Positives = 110/259 (42%), Gaps = 50/259 (19%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKV-SGRVTYNGHNMDEFVPE 225
ILK V+ VK G + ++GP SGK+TL +AG PS +V SG + + G ++ E P+
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG--HPSYEVTSGTILFKGQDLLELEPD 72
Query: 226 RTAA---YIS-QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
A +++ Q+ I ++ E L A +RR + + +
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALN--------------ARRSA----RGEEPL 114
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV-G 340
D+ + L +LG+D + + + G SGG+KKR +M +
Sbjct: 115 DLL--DFLKLLKAK-------LALLGMD---EEFLNRSVNEGFSGGEKKRNEILQMALLE 162
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII---- 396
P LA+ +DEI +GLD + + + +I+ Q L + I
Sbjct: 163 PKLAI-LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ------RLLNYIKPDYV 215
Query: 397 -LLSDGQIVYQGPRELVLE 414
+L DG+IV G EL E
Sbjct: 216 HVLLDGRIVKSGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 2e-14
Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 15/190 (7%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQET 926
DKLV+ +G+S + G L+G +GAGKTT + +L G G I + G P
Sbjct: 19 DKLVV-DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRA 75
Query: 927 -FARIS-GYCEQNDIHSPFVTVYESLF-YSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
AR G Q D P TV E+L + + L + R + + ++E +L+
Sbjct: 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS---AAAARAL-VPPLLEFAKLENK 131
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
+ VG LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ +
Sbjct: 132 ADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186
Query: 1044 TGRTVVCTIH 1053
G+T++ T H
Sbjct: 187 RGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 2e-14
Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 11/170 (6%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
++ VS R G L+G SG+GK+TL +LAG + G I + +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 929 RISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
R Q+ S P +TV + L LR+ + R+ + E++ELV L P +
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP--EF 422
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
L P + LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 423 LDRYP--HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 78/275 (28%), Positives = 116/275 (42%), Gaps = 69/275 (25%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKV-SGRVTYNGHNMDEFVP- 224
ILK V+ VK G + ++GP SGK+TL + G P +V G + ++G ++ E P
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDGEDILELSPD 76
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFA--ARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
ER A I LAF GV + ++ R A GI P+
Sbjct: 77 ERARAGI--------------FLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPE---- 118
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM-RRGV----SGGQKKRVTTGEM 337
F+K E +E ++LGLD +E R V SGG+KKR ++
Sbjct: 119 -FIK----ELKEK-------AELLGLD--------EEFLERYVNEGFSGGEKKRNEILQL 158
Query: 338 MV-GPALALFMDEISTGLDSSTTFQI---VNCFKQNIHINSGTAVISLLQPAPETYNLFD 393
++ P LA+ +DE +GLD + +N ++ G +I+ Q L D
Sbjct: 159 LLLEPKLAI-LDEPDSGLDIDALKIVAEGINALREE---GRGVLIITHYQ------RLLD 208
Query: 394 DII-----LLSDGQIVYQGPRELVLEFFESMGFKC 423
I +L DG+IV G EL E E G+
Sbjct: 209 YIKPDKVHVLYDGRIVKSGDPELA-EELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 2e-14
Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGDIRISGYPKKQETFARIS 931
VS G + L+G +GAGKTT ++ G R G I D IS P I
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI- 80
Query: 932 GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP 991
GY Q ++VY++L A L++ ++++E R+ E+ME ++ LR S+
Sbjct: 81 GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG--- 135
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1051
LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+ T
Sbjct: 136 --QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLIT 193
Query: 1052 IH--QPSIDIFE 1061
H + ++ + E
Sbjct: 194 DHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 70/270 (25%), Positives = 99/270 (36%), Gaps = 73/270 (27%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T+LK V V+ G + ++GP SGK+TLL + G L P SG V +G ++
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEA 70
Query: 226 ------RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
R + Q +TV E +AF R T LS E
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLR---------EHTRLSEEE--------- 112
Query: 280 DID--VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM 337
I V K L+ +GL D + +SGG KKRV
Sbjct: 113 -IREIVLEK----------------LEAVGLRGAEDLYPAE-----LSGGMKKRV----- 145
Query: 338 MVGPALA---------LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPET 388
ALA L DE + GLD + I + +++ G I +
Sbjct: 146 ----ALARALALDPELLLYDEPTAGLDPIASGVIDDLI-RSLKKELGLTSIMVTHDLDTA 200
Query: 389 YNLFDDIILLSDGQIVYQGPRELVLEFFES 418
+ + D I +L DG+IV +G E E S
Sbjct: 201 FAIADRIAVLYDGKIVAEGTPE---ELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 3e-14
Identities = 55/216 (25%), Positives = 93/216 (43%), Gaps = 33/216 (15%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L+GVS RPG + AL+G +GAGK+TLM +L+G G +I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG----EILIDGKP------VA 73
Query: 930 ISGYCEQND-----IH-----SPFVTVYESLFYSAWLRLPPEVNSETRKMFIE--EVMEL 977
S + +H P ++V E++F + + M E++
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDR-KAMRRRARELLAR 132
Query: 978 VEL-KPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
+ L LVG LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 133 LGLDIDPDT-LVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD 186
Query: 1037 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+R G ++ H+ ++FE D + +++ G
Sbjct: 187 LIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 3e-14
Identities = 64/225 (28%), Positives = 99/225 (44%), Gaps = 30/225 (13%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
L+ VS G L AL+G SG+GKTTL+ ++AG R G I G + P ++
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---- 73
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
R G+ Q+ +TV++++ + LR+ P +V EL++ LV
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLK-------LV 124
Query: 989 GLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
L + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 125 QLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD 184
Query: 1044 -TGRTVVCTIHQPSIDIFEAFDELFLMKRG-------GREVYVGP 1080
T V H + E D + +M +G EVY P
Sbjct: 185 ELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (183), Expect = 3e-14
Identities = 54/202 (26%), Positives = 87/202 (43%), Gaps = 38/202 (18%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GDIRISGYPKKQ--- 924
LL+ VS RPG + A++G +GAGK+TL+ L+ G ++ G++R++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 925 ETFARISGYCEQNDIHS----PFVTVYE--SLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
AR Q HS PF TV E ++ + E ++ + + V
Sbjct: 72 AELARRRAVLPQ---HSSLSFPF-TVEEVVAMGRAPHGLSRAEDDAL-----VAAALAQV 122
Query: 979 ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAA 1032
+L L LS +++R+ +A L P + +DEPTS LD
Sbjct: 123 DLAHLAGRD-----YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH 177
Query: 1033 IVMRTVRN-TVDTGRTVVCTIH 1053
V+R R + G V+ +H
Sbjct: 178 HVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 21/177 (11%)
Query: 860 KLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRI 917
+ G + LN VS G ++G SG+GK+TL +LAG + + +G I +
Sbjct: 11 IVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILL 66
Query: 918 SG--YPKKQET--FARISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFI 971
G K+ F R Q+ S P TV L LR S+ R I
Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEP--LRPHGLSKSQQR---I 121
Query: 972 EEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
E+++ V L P L P + LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 122 AELLDQVGLPPSF--LDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 4e-14
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GDIRISGYPKKQETF 927
L+ VS + + G L+G SG+GK+TL + G + T G I G + + ++
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 928 ARISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
+ Q+ + S P +T+ E + + E RK + ++ V L
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS-KKEARKEAVLLLLVGVGLPEEVL 139
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
+ P + LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 140 NR--YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 5e-14
Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 23/242 (9%)
Query: 822 LTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQM---KLQGVPE---DKLVLLNGV 875
LT A A +R + P E E S+ L GV + DK V+ NG+
Sbjct: 2 LTRAVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKAVV-NGL 60
Query: 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP-KKQETFARIS-GY 933
S G L+G +GAGK+T+ ++ G + G I + G P + AR G
Sbjct: 61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARIGV 118
Query: 934 CEQNDIHSPFVTVYESLF-YSAWLRLPPEVNSETRKMFIEEVM-ELVELKPLRQSLVGLP 991
Q D TV E+L + + + TR+ IE V+ L+E L +S
Sbjct: 119 VPQFDNLDLEFTVRENLLVFGRYFGM------STRE--IEAVIPSLLEFARL-ESKADAR 169
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1051
V+ LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++ T
Sbjct: 170 -VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 228
Query: 1052 IH 1053
H
Sbjct: 229 TH 230
|
Length = 340 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 5e-14
Identities = 63/208 (30%), Positives = 107/208 (51%), Gaps = 18/208 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L G++ + G +TA++G +GAGK+TL L G + + G I D + Y +K R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 930 IS-GYCEQNDIHSPF-VTVYESLFYSAW-LRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
S G Q+ + F +VY+ + + A L+LP + E RK ++ ++ ++ L+
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPED---EVRKR-VDNALKRTGIEHLKDK 137
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1045
+ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G
Sbjct: 138 -----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG 192
Query: 1046 RTVVCTIHQPSIDIFEAF-DELFLMKRG 1072
T++ H IDI + D +F+MK G
Sbjct: 193 LTIIIATH--DIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 8e-14
Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 44/208 (21%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
L L DVS V+PG + L+GP +GKTTL ++G L P+ SG V ++G ++ P
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPP 69
Query: 225 -ERTAAYIS---QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
E I Q E+TV E + AA+ + T +L +RRE+
Sbjct: 70 HEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREER-------- 118
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE---- 336
EA + L+ +GL AD G+ +S GQ++R+ E
Sbjct: 119 -------------EARERAEELLERVGLADLADRPAGE-----LSYGQQRRL---EIARA 157
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVN 364
+ P L L +DE + GL+ T ++
Sbjct: 158 LATDPKL-LLLDEPAAGLNPEETEELAE 184
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 8e-14
Identities = 61/264 (23%), Positives = 96/264 (36%), Gaps = 69/264 (26%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
IL VS V G + LLG +GKTTLL + G L P SG + ++G ++ P
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPP 69
Query: 225 ERTA----AYISQHDNHIGEMTVRETLAFAARCQGVGTR-------YEMLTEL-SRREKA 272
A Y+ + E+TV E L A + R YE+ L RR++
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQL 129
Query: 273 AGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRV 332
AG T+ SGG+++ +
Sbjct: 130 AG---------------------------------------TL---------SGGEQQML 141
Query: 333 TTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHIN-SGTAVISLLQPAPETYN 390
+M P L L +DE S GL +I ++ + G ++ + Q A
Sbjct: 142 AIARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIRE---LRDEGVTILLVEQNARFALE 197
Query: 391 LFDDIILLSDGQIVYQGPRELVLE 414
+ D +L G++V +G +L
Sbjct: 198 IADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 8e-14
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 25/199 (12%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGDIRISGYPKKQE 925
V+L+ ++ G + A++G SG+GK+TL++++ + G Y+ G KK
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 926 TFARIS-GYCEQNDIHSPFV-----TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE 979
F R GY QN F TV E+L L+ E R+ +E +E V
Sbjct: 72 KFRREKLGYLFQN-----FALIENETVEENL--DLGLKYKKLSKKEKREK-KKEALEKVG 123
Query: 980 L-KPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
L L+Q + LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 124 LNLKLKQK------IYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLL 177
Query: 1039 RNTVDTGRTVVCTIHQPSI 1057
D G+T++ H P +
Sbjct: 178 LELNDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 9e-14
Identities = 56/221 (25%), Positives = 84/221 (38%), Gaps = 57/221 (25%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GDIRISG---- 919
E K +L GV+ + G + A+MG +G+GK+TL + G Y +T G+I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 920 -----------------YPKKQETFARISGYCEQNDIHSPFVTVYESL--FYSAWLRLPP 960
YP I G VT + L +A
Sbjct: 72 ELSPDERARAGIFLAFQYP------VEIPG-----------VTNSDFLRAAMNARRGARG 114
Query: 961 EVNSETRKMFIEEVMELVELKPL---RQSLVGLPGVN-GLSTEQRKRLTIAVELVANPSI 1016
+ +++ +E EL+ L R VN G S ++KR I L+ P +
Sbjct: 115 ILPEFIKEL--KEKAELLGLDEEFLER-------YVNEGFSGGEKKRNEILQLLLLEPKL 165
Query: 1017 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1057
+DEP SGLD A IV + + GR V+ H +
Sbjct: 166 AILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 9e-14
Identities = 58/274 (21%), Positives = 99/274 (36%), Gaps = 76/274 (27%)
Query: 156 HILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYN 215
P+ + L DVS +K G L+G SGK+TL A+ G L P SG + ++
Sbjct: 9 VSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP---TSGSIIFD 65
Query: 216 GHNMDEFVPE------RTAAYISQHD-----NHIGEMTVRETLAFAARCQGVGTRYEMLT 264
G ++ + + + Q D N MT+ E +A R G ++ E
Sbjct: 66 GKDLLKLSRRLRKIRRKEIQMVFQ-DPMSSLNPR--MTIGEQIAEPLRIHGKLSKKEARK 122
Query: 265 ELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324
E G+ + + E +
Sbjct: 123 EA-VLLLLVGVGLPEE---VLNRYPHE--------------------------------L 146
Query: 325 SGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI 379
SGGQ++RV + ALA L DE ++ LD S QI++ K+ + G ++
Sbjct: 147 SGGQRQRV-----AIARALALNPKLLIADEPTSALDVSVQAQILDLLKK-LQEELGLTLL 200
Query: 380 ------SLLQPAPETYNLFDDIILLSDGQIVYQG 407
++ + D + ++ G+IV +G
Sbjct: 201 FITHDLGVVA------KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 21/167 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGDIRISGYPKKQETF 927
LN +S + PG L L+G +GAGKTTLMDV+ G R G GD ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 928 ARISGYCEQNDIHSPF--VTVYESLFY------SAWLRLPPEVNSETRKMFIEEVMELVE 979
AR G + + F +TV E+L S + L + +E R+ I+E++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR-IDELLATIG 136
Query: 980 LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026
L R L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 26/217 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISG---YPKKQET 926
L G+S G + +G +GAGKTT + +L+G + T G ++R++G + ++++
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG----EVRVAGLVPWKRRKKF 92
Query: 927 FARISGYCEQNDIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVEL--KPL 983
RI Q + V +S +A LPP + E +++L EL P+
Sbjct: 93 LRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSE-LLDLEELLDTPV 151
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1042
RQ LS QR R IA L+ P I+F+DEPT GLD A + ++
Sbjct: 152 RQ----------LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR 201
Query: 1043 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
+ G TV+ T H DI EA L+ GR +Y G
Sbjct: 202 ERGTTVLLTSHYMK-DI-EALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 63/221 (28%), Positives = 112/221 (50%), Gaps = 26/221 (11%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIR-ISGYPKKQET 926
V+L+ VS G +T+++G +GAGK+TL+ +++ +K G IT D ++ P +E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPS-KEL 73
Query: 927 FARISGYCEQNDIHSPFVTVYESLFYSAWLRLP---PEVNSETRKMFIEEVMELVELKPL 983
++S ++N I+S TV + + + R P + E R++ I E +E + L+ L
Sbjct: 74 AKKLSILKQENHINSRL-TVRDLVGFG---RFPYSQGRLTKEDRRI-INEAIEYLHLEDL 128
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
+ + LS QR+R IA+ L + + +DEP + LD + + +M+ +R D
Sbjct: 129 SDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLAD 183
Query: 1044 T-GRTVVCTIHQPSIDIFEA---FDELFLMKRGGREVYVGP 1080
G+T+V +H DI A D + +K G+ V G
Sbjct: 184 ELGKTIVVVLH----DINFASCYSDHIVALKN-GKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 2e-13
Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 62/203 (30%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L+GVS + R G + AL+G +GAGK+TLM +L+G + G+I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS----GEILVDGKEV------- 64
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
SP + R+ I V +L
Sbjct: 65 --------SFASP---------------------RDARRAGIAMVYQL------------ 83
Query: 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
S +R+ + IA L N ++ +DEPT+ L + + +R G V+
Sbjct: 84 -------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
Query: 1050 CTIHQPSIDIFEAFDELFLMKRG 1072
H+ ++FE D + +++ G
Sbjct: 137 FISHRLD-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 3e-13
Identities = 63/268 (23%), Positives = 120/268 (44%), Gaps = 34/268 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS 931
++ +S PG + L+G +GAGKTT ++ G G+I +G P QE RI
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRI- 74
Query: 932 GYC-EQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGL 990
GY E+ ++ P +TV + L Y A L+ P+ + + ++ +E +E+ + +
Sbjct: 75 GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKK---LQAWLERLEIVGKKTKKI-- 128
Query: 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1050
LS ++++ ++ P ++ +DEP SGLD ++ + + G T++
Sbjct: 129 ---KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIF 185
Query: 1051 TIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH------------HSCHLISYFEAIPGV 1098
+ H+ + E D L ++K+G +Y G + S + IPG+
Sbjct: 186 SSHRME-HVEELCDRLLMLKKGQTVLY-GTVEDIRRSFGKKRLVIESDLSLEELANIPGI 243
Query: 1099 EKI---KDGYNPATWMLEVSASSQEVAL 1123
KI KDG +W +++ + +
Sbjct: 244 LKITETKDG----SWRIQIENETVAREI 267
|
Length = 300 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 3e-13
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 18/192 (9%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQ 924
+ +L G+S G + G +G GKTTL+ +LAG R G + + +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 925 ETFARISGYCEQNDIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
+ R Y P ++ E+L F++A + IE+ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHFWAAIHG--------GAQRTIEDALAAVGLTGF 120
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
LP LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 121 ED----LP-AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA 175
Query: 1044 TGRTVVCTIHQP 1055
G V+ T HQ
Sbjct: 176 RGGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 4e-13
Identities = 64/259 (24%), Positives = 104/259 (40%), Gaps = 42/259 (16%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
LKDV+ + G + ++GP +GK+TLL +L G +DP+ SG + +NG + + +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74
Query: 226 ------RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
R I Q N + ++V E + T + S+ +KA
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGY-TSTWRSLFGLFSKEDKAQA----- 128
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
+D E ++ Y + A T+ SGGQ++RV +V
Sbjct: 129 -LDAL--------ERVGILDKAYQR-------ASTL---------SGGQQQRVAIARALV 163
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399
+ DE LD + ++++ K I+ G VI L D II L
Sbjct: 164 QQPKIILADEPVASLDPESAKKVMDILKD-INQEDGITVIVNLHQVDLAKKYADRIIGLK 222
Query: 400 DGQIVYQGP-RELVLEFFE 417
G+IV+ GP EL E +
Sbjct: 223 AGRIVFDGPASELTDEALD 241
|
Length = 258 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-13
Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 26/202 (12%)
Query: 886 ALMGVSGAGKTTLMDVLAGRKTGGYITGDIR-----ISGYPKKQETFARISGYCEQNDIH 940
++G +G+GK+ L++ +AG +G I I+ P ++ Y QN
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDITNLPPEKRDI----SYVPQNYAL 82
Query: 941 SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVM---ELVELKPLRQSLVGLPGVNGLS 997
P +TVY+++ Y R + E + + I E++ L+ KP LS
Sbjct: 83 FPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------LS 131
Query: 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1057
+++R+ IA LV NP I+ +DEP S LD R + ++ V +
Sbjct: 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191
Query: 1058 DIFEAFDELFLMKRGGREVYVG 1079
+ + D++ +M G+ + VG
Sbjct: 192 EAWALADKVAIM-LNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 4e-13
Identities = 77/304 (25%), Positives = 128/304 (42%), Gaps = 62/304 (20%)
Query: 159 PSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218
P +KK L D+S + G T L+G SGK+T+ + G L P + ++T +G
Sbjct: 16 PDSKK--PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73
Query: 219 MDEF----VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAG 274
+ + E+ DN TV + +AF + V R EM+
Sbjct: 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV-PRPEMIK---------- 122
Query: 275 IKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT- 333
I D DV M + E AN+ SGGQK+RV
Sbjct: 123 IVRDVLADVGM-LDYIDSEPANL---------------------------SGGQKQRVAI 154
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393
G + V P + + +DE ++ LD + QI+ ++ + + VIS+ E N+ D
Sbjct: 155 AGILAVEPKI-IILDESTSMLDPAGKEQILKLIRK-LKKKNNLTVISITHDIDEA-NMAD 211
Query: 394 DIILLSDGQIVYQG-PRELV--LEFFESMGFKCP---------KRKGVADFLQEVTSKKD 441
+++L DG+++ QG P E+ +E + +G P K KG++ QE+ +++
Sbjct: 212 QVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEKGIS-VPQEINTEEK 270
Query: 442 QEQY 445
QY
Sbjct: 271 LVQY 274
|
Length = 282 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 5e-13
Identities = 64/253 (25%), Positives = 105/253 (41%), Gaps = 55/253 (21%)
Query: 160 STKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL----DPSLKVSGRVTYN 215
S +K +L D++ + PG + +L GP SGKTT LL L G L + SLKV G+ Y
Sbjct: 15 SLRKQ--VLFDINLEINPGEIVILTGPSGSGKTT-LLTLIGGLRSVQEGSLKVLGQELYG 71
Query: 216 GHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275
+ R YI Q N +G +T R+ + A E+ LS +E
Sbjct: 72 ASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMAL---------ELQPNLSYQE----- 117
Query: 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR---RGVSGGQKKRV 332
+ + L+ +GL GD + +SGGQK+RV
Sbjct: 118 ---------ARERARA----------MLEAVGL--------GDHLDYYPHNLSGGQKQRV 150
Query: 333 TTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL 391
+V P L + DE + LDS + +V ++ G ++ ++ ++
Sbjct: 151 AIARALVHRPKL-VLADEPTAALDSKSGRDVVELMQKLAR-EQGCTIL-IVTHDNRILDV 207
Query: 392 FDDIILLSDGQIV 404
D I+ + DG+++
Sbjct: 208 ADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 6e-13
Identities = 67/264 (25%), Positives = 106/264 (40%), Gaps = 55/264 (20%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
LT + DVS V+PG + L+GP +GKTTL + G PS SG V + G ++ P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 225 ERTAAY-IS---QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
R A I+ Q +TV E +A A + L R K
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHAR---LGLSGLLGRPRARKE-------- 122
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE---- 336
+ A E L+ +GL AD G+ +S GQ++R+ E
Sbjct: 123 ----EREARERAREL-------LEFVGLGELADRPAGN-----LSYGQQRRL---EIARA 163
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAV------ISLLQPAPETYN 390
+ P L L +DE + GL+ T ++ + + G + + L+
Sbjct: 164 LATQPKL-LLLDEPAAGLNPEETEELAELIR-ELRDRGGVTILLIEHDMKLV------MG 215
Query: 391 LFDDIILLSDGQIVYQGPRELVLE 414
L D I++L+ G+++ +G E V
Sbjct: 216 LADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 6e-13
Identities = 57/200 (28%), Positives = 87/200 (43%), Gaps = 41/200 (20%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG---HNMDEFV 223
+L VS + PG +LGP SGK+TLL LAG LDP G VT +G ++D+
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
R + +Q D H+ + TVRE L A T E+ L R G+
Sbjct: 407 VRRRVSVCAQ-DAHLFDTTVRENLRLAR---PDATDEELWAALER----VGLADWL---- 454
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
A +G DT++G E +SGG+++R+ ++ A
Sbjct: 455 ---RALPDG-------------------LDTVLG-EGGARLSGGERQRLALARALLADAP 491
Query: 344 ALFMDEISTGLDSSTTFQIV 363
L +DE + LD+ T +++
Sbjct: 492 ILLLDEPTEHLDAETADELL 511
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 6e-13
Identities = 68/257 (26%), Positives = 106/257 (41%), Gaps = 51/257 (19%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+L VS ++PG + +LGP +GK+TLL AL+G+L P SG VT NG ++ + PE
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
A H + +LAF Q V ++ R +G +P
Sbjct: 72 ELA-------RHRAVLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREP-------- 109
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMM------V 339
EE I L L A R +SGG+++RV ++ V
Sbjct: 110 -------EEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLARVLAQLWPPV 157
Query: 340 GPALALFMDEISTGLDSS---TTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396
LF+DE ++ LD + T ++ G AV+++L D I+
Sbjct: 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQL-----AREGGAVLAVLHDLNLAAQYADRIV 212
Query: 397 LLSDGQIVYQGPRELVL 413
LL G+++ G + VL
Sbjct: 213 LLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 7e-13
Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 36/216 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGD-IRISGYPKKQETFA 928
L ++ + +PG A++G +GAGKTTL+++L G I D I I +K +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK--SLR 76
Query: 929 RISGYCEQNDIHSPFV---TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
+ G Q F+ T+ E++ EEV+E +
Sbjct: 77 SMIGVVLQ----DTFLFSGTIMENIRLG---------RPNATD---EEVIEAAKEAGAHD 120
Query: 986 SLVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
++ LP LS +R+ L IA ++ +P I+ +DE TS +D ++
Sbjct: 121 FIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180
Query: 1037 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ + GRT + H+ S I A D++ ++ G
Sbjct: 181 ALEKLMK-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 7e-13
Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 13/203 (6%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFA-RI 930
L+ V+ G L AL+G SG+GK+TL+ ++AG + +G IR++G + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRK 73
Query: 931 SGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGL 990
G+ Q+ +TV +++ + +R P K +EE++ELV+L+ L
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHP---KAKIKARVEELLELVQLEGLGDR---Y 127
Query: 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TVV 1049
P N LS QR+R+ +A L P ++ +DEP LDA+ + +R D T V
Sbjct: 128 P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV 185
Query: 1050 CTIHQPSIDIFEAFDELFLMKRG 1072
H + E D + +M G
Sbjct: 186 FVTHDQE-EAMEVADRIVVMSNG 207
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 7e-13
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 30/218 (13%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGD-IRISGYPKKQ 924
+ L+ VS G + ++G SGAGK+TL+ ++ R T G + D ++ + +
Sbjct: 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAE 77
Query: 925 -ETFARISGYCEQ--NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
+ G Q N + S TV+E++ + P E+ + + V EL+EL
Sbjct: 78 LRQLRQKIGMIFQHFNLLSSR--TVFENVAF------PLELAGVPKAEIKQRVAELLEL- 128
Query: 982 PLRQSLVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVM 1035
VGL LS Q++R+ IA L NP I+ DE TS LD +I+
Sbjct: 129 ------VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182
Query: 1036 RTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1072
+ G T+V H+ +++ + D + ++ +G
Sbjct: 183 LLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 8e-13
Identities = 60/256 (23%), Positives = 97/256 (37%), Gaps = 61/256 (23%)
Query: 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV 223
+ L+ VS V+ G + LLG +GKTTLL + G + P SGR+ ++G ++
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLP 71
Query: 224 PERTA----AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
P A AY+ + +TV E L A R + D
Sbjct: 72 PHERARLGIAYVPEGRRIFPRLTVEENLLLGA---------------YARRDKEAQERDL 116
Query: 280 DIDVFMKAASTEGEEANVITDYY--LKVLGLDICADTMVGDEMRR---GV-SGGQKKRVT 333
+ +V+ + + LK E R G SGG+++ +
Sbjct: 117 E-EVY---------------ELFPRLK--------------ERRNQRAGTLSGGEQQMLA 146
Query: 334 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLF 392
+M P L L +DE S GL +I K+ + G ++ + Q A +
Sbjct: 147 IARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIKE-LRKEGGMTILLVEQNARFALEIA 204
Query: 393 DDIILLSDGQIVYQGP 408
D +L +G+IV G
Sbjct: 205 DRGYVLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (180), Expect = 8e-13
Identities = 63/200 (31%), Positives = 96/200 (48%), Gaps = 23/200 (11%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS------GY 933
RPG L+GV+GAGKTT +L G T +GD ++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 934 CEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGV 993
C Q D +T E L+ A LR P IE+V ++ L SL
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEE-------IEKVANW-SIQSLGLSLYADRLA 2068
Query: 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1053
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2069 GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
Query: 1054 QPSIDIFEAF-DELFLMKRG 1072
S++ EA L +M +G
Sbjct: 2129 --SMEECEALCTRLAIMVKG 2146
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 9e-13
Identities = 66/253 (26%), Positives = 106/253 (41%), Gaps = 49/253 (19%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
LK+++ + PG ++GP +GK+TLL + ++PS SG + G ++ + +
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGK 72
Query: 226 ------RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
R I QH N I +TV E + R T +L S +K
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSLLGRFSEEDK-------- 123
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE-MM 338
+A S L+ +GL A D++ SGGQ++RV +
Sbjct: 124 -----ERALSA------------LERVGLADKAYQRA-DQL----SGGQQQRVAIARALA 161
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSG-TAVISL--LQPAPETYNLFDDI 395
P L L DE LD T+ Q+++ K I+ G T +I+L + A + D I
Sbjct: 162 QQPDLIL-ADEPIASLDPKTSKQVMDYLK-RINKEDGITVIINLHQVDLAKK---YADRI 216
Query: 396 ILLSDGQIVYQGP 408
+ L G+IV+ G
Sbjct: 217 VGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 51/214 (23%), Positives = 78/214 (36%), Gaps = 48/214 (22%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+ +S + G +L GP SGKTTLL +AG L P +G + +G ++D+
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDVA 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
Y+ + +TV E L F A G + DI
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLG--------------------GEELDIA--- 109
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALAL 345
AA L+ +GL A G +S GQK+RV ++V
Sbjct: 110 -AA--------------LEAVGLAPLAHLPFGY-----LSAGQKRRVALARLLVSNRPIW 149
Query: 346 FMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI 379
+DE + LD++ + H+ G VI
Sbjct: 150 ILDEPTAALDAAAVALFAELIR--AHLAQGGIVI 181
|
Length = 207 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 1e-12
Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 28/170 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
LN +S PG L ++G +GAGKTT+MDV+ G R G + G ++G P+ Q A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ--IA 75
Query: 929 RISGYCE--QNDIHSPFVTVYE----------SLFYSAWLRLPPEVNSETRKMFIEEVME 976
R +G Q +TV+E S+F S + RL E IEEV+E
Sbjct: 76 R-AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR-----IEEVLE 129
Query: 977 LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026
+ L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 130 TIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
L VS G L G SGAGK+TL+ ++ G R T G I +S ++ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 929 RIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
R G Q+ P TVYE++ LP V + + V E+++L L+
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENV------ALPLRVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
LP + LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1048 VVCTIH 1053
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-12
Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 24/209 (11%)
Query: 860 KLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG 919
K G E +L +L GV + G A++G SG+GK+TL+ VLAG +G++R+ G
Sbjct: 14 KTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLG 71
Query: 920 YP---KKQETFARIS----GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIE 972
P ++ A + G+ Q+ P +T E+ + LP E+ E+
Sbjct: 72 QPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALEN------VALPLELRGESSADSRA 125
Query: 973 EVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----A 1028
L+E L + L P LS +++R+ +A P ++F DEPT LD
Sbjct: 126 GAKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183
Query: 1029 RAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1057
+ A ++ R + G T+V H P +
Sbjct: 184 KIADLLFALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-12
Identities = 66/251 (26%), Positives = 112/251 (44%), Gaps = 49/251 (19%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
L D++ +K G+LT L+G +GK+TLL L G L P+ G + NG ++ + PE
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
+ +++SQ+ ++ T+RE + A + + E + + P PD
Sbjct: 392 AWRKQISWVSQN-PYLFAGTIRENILLA---RPDASD-EEIIAALDQAGLLEFVPKPD-- 444
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
GL DT++G E G+SGGQ +R+ ++ PA
Sbjct: 445 ------------------------GL----DTVIG-EGGAGLSGGQAQRLALARALLSPA 475
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNI-HINSGTAVISLLQPAPETYNLFDDIILLSDG 401
L +DE + LD+ T QI+ Q + + V+ ++ E D I++L +G
Sbjct: 476 SLLLLDEPTAHLDAETE-QII---LQALQELAKQKTVL-VITHRLEDAADADRIVVLDNG 530
Query: 402 QIVYQG-PREL 411
++V QG EL
Sbjct: 531 RLVEQGTHEEL 541
|
Length = 559 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 2e-12
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
+LKDVS +KPG ++GP SGK+TLL L DP+ SG + +G ++ + E
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLES 73
Query: 226 --RTAAYISQHDNHIGEMTVRE 245
+ AY+ Q D + T+RE
Sbjct: 74 LRKNIAYVPQ-DPFLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-12
Identities = 74/276 (26%), Positives = 115/276 (41%), Gaps = 65/276 (23%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T + D+S +K G LLGP GKTTLL +AG PS SG + +G ++ + PE
Sbjct: 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPE 75
Query: 226 -RTAAYISQ------HDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPD 278
R + Q H MTV E +AF + + ++ K A IK
Sbjct: 76 KRPIGMVFQSYALFPH------MTVEENVAFGLK-------------VRKKLKKAEIK-- 114
Query: 279 PDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMM 338
EEA L+++GL+ AD +SGGQ++RV +
Sbjct: 115 -----------ARVEEA-------LELVGLEGFADRKPHQ-----LSGGQQQRVALARAL 151
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398
V L +DE + LD+ Q+ K+ + G + + E + D I ++
Sbjct: 152 VPEPKVLLLDEPLSALDAKLREQMRKELKE-LQRELGITFVYVTHDQEEALAMSDRIAVM 210
Query: 399 SDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
+DG+I G P E+ ++ P + VADF+
Sbjct: 211 NDGRIEQVGTPEEI---------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 64/265 (24%), Positives = 104/265 (39%), Gaps = 71/265 (26%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAG--KLDPSLKVSGRVTYNGHN---MDE 221
LKD+S + G +T L+GP GK+TLL L L P G V +G + +D
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 222 FVPE--RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
V E R + Q N ++ + +A+ R G+ + EL R + A
Sbjct: 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLK----EELDERVEEA------ 123
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR-----GVSGGQKKRVTT 334
L+ L DE++ G+SGGQ++R+
Sbjct: 124 -----------------------LRKAALW--------DEVKDRLHALGLSGGQQQRLCL 152
Query: 335 GE-MMVGPALALFMDEISTGLDSSTTFQI---VNCFKQNIHINSGTAVI---SLLQPAPE 387
+ P + L +DE ++ LD +T +I + K+ T VI ++ Q A
Sbjct: 153 ARALANEPEV-LLLDEPTSALDPISTAKIEELIAELKKEY-----TIVIVTHNMQQAA-- 204
Query: 388 TYNLFDDIILLSDGQIVYQGPRELV 412
+ D L +G++V GP E +
Sbjct: 205 --RVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 64/277 (23%), Positives = 100/277 (36%), Gaps = 77/277 (27%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
IL V V G + +LG SGK+TLL + G L P G + +G ++ + E
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEE 78
Query: 226 RTAA------YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
+ Q +TV E +AF T+L
Sbjct: 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAF---------PLREHTKLPESLIR------- 122
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
++ V MK L+++GL D +SGG +KRV
Sbjct: 123 EL-VLMK----------------LELVGL----RGAAADLYPSELSGGMRKRV------- 154
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCFKQNIHINS--GTAVISLLQPAPET 388
ALA LF+DE ++GLD + I + +N G VI +
Sbjct: 155 --ALARAIALDPELLFLDEPTSGLDPISAGVIDELIR---ELNDALGLTVIMVTHDLDSL 209
Query: 389 YNLFDDIILLSDGQIVYQGPRE--------LVLEFFE 417
+ D + +L+DG+++ +G E V +FF
Sbjct: 210 LTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFFN 246
|
Length = 263 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 18/208 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRI-----SGYPKKQET 926
L ++ PG + L G SG+GKTTL+ ++ G ++ G +++ G +K+
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQELYGASEKELV 78
Query: 927 FARIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
R + GY Q F+T +++ + L L P ++ + + ++E V L
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLG---D 133
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1044
L P + LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++ +
Sbjct: 134 HLDYYP--HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
Query: 1045 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
G T++ H I + D + M+ G
Sbjct: 192 GCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 64/248 (25%), Positives = 101/248 (40%), Gaps = 45/248 (18%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP- 224
L DV+ V G L LLGP SGK+TLL +AG P SGR+ NG +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHAR 70
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
+R ++ QH +TVR+ +AF E+ + KA
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAFG-------------LEIRKHPKAK----------- 106
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA 344
+KA E L+++ L +GD +SGGQ++RV +
Sbjct: 107 IKARVEE----------LLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404
L +DE LD+ ++ + ++ T V + E + D I+++S+G+I
Sbjct: 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIE 210
Query: 405 YQG-PREL 411
G P E+
Sbjct: 211 QIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 62/201 (30%), Positives = 90/201 (44%), Gaps = 26/201 (12%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIT-GDIRISGYP--KKQ 924
+L+G+ +PG + A++G SG+GKTTL+ L + G I GDI I +Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 925 ETFARI----SGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL 980
+ R G+ QN P TV E++ + P V E ++ EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENI-----IEGPVIVKGEPKEEATARARELL-- 129
Query: 981 KPLRQSLVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
+ VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 1036 RTVRNTVDTGRTVVCTIHQPS 1056
T+R RT+V H+ S
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 2e-12
Identities = 65/259 (25%), Positives = 108/259 (41%), Gaps = 97/259 (37%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
LKD++ V G L ++GP SGK++LL AL G+L+ K+SG V+ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG---------- 66
Query: 227 TAAYISQ---HDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP---DPD 280
+ AY+SQ N T+RE + F G ++ R EK IK +PD
Sbjct: 67 SIAYVSQEPWIQN----GTIRENILF-------GKPFDE----ERYEKV--IKACALEPD 109
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTGEMM 338
+++ +G+ T +G+ +G+ SGGQK+R+
Sbjct: 110 LEIL-----PDGDL-------------------TEIGE---KGINLSGGQKQRI------ 136
Query: 339 VGPALA---------LFMDEISTGLDSSTTFQIV-NCFKQNIHINSGTAV-----ISLLQ 383
+LA +D+ + +D+ I NC + +N+ T + + LL
Sbjct: 137 ---SLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL-LNNKTRILVTHQLQLLP 192
Query: 384 PAPETYNLFDDIILLSDGQ 402
A D I++L +G+
Sbjct: 193 HA-------DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 3e-12
Identities = 66/209 (31%), Positives = 100/209 (47%), Gaps = 20/209 (9%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK-QETFARI 930
L+ +S R G + ALMG +GAGK+TL+ +L+G G I I G + T A +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAAL 77
Query: 931 -SG----YCEQNDIH-SPFVTVYESLFYSAWL-RLPPEVNSETRKMFIEEVMELVELKPL 983
+G Y E +H P +TV E+L +L +LP + R++ E E +L+ L
Sbjct: 78 AAGVAIIYQE---LHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEARE--QLEHL 128
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
+ + LS QR+ + IA L N +I DEPTS L AR + R +R
Sbjct: 129 GVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188
Query: 1044 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
GR ++ H+ +IF D + + K G
Sbjct: 189 EGRVILYVSHRME-EIFALCDAITVFKDG 216
|
Length = 501 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-12
Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 29/220 (13%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924
P K L G+S + + G A++G SG+GK+TL ++ G +G +R+ G KQ
Sbjct: 327 PGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQ 384
Query: 925 ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
ETF + GY Q D+ TV E++ R + E +++E +L
Sbjct: 385 WDRETFGKHIGYLPQ-DVELFPGTVAENI-----ARFGENADPE-------KIIEAAKLA 431
Query: 982 PLRQSLVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
+ + ++ LP G LS QR+R+ +A L +P ++ +DEP S LD
Sbjct: 432 GVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ 491
Query: 1033 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ ++ G TVV H+PS + D++ +++ G
Sbjct: 492 ALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 22/212 (10%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGDIRISGYPKKQET 926
+LN +S + G +TAL+G +G GK+TL+ A R ++G GD IS +Q
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPISMLSSRQ-- 73
Query: 927 FARISGYCEQNDIHSPFVTVYESLFY--SAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
AR Q+ + +TV E + Y S WL L +++E + + ME + L
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNAR-VNQAMEQTRINHLA 132
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
+ LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 133 DRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ 187
Query: 1045 GRTVVCTIHQPSIDIFEA---FDELFLMKRGG 1073
G+TVV +H D+ +A D L ++ G
Sbjct: 188 GKTVVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 3e-12
Identities = 73/331 (22%), Positives = 126/331 (38%), Gaps = 54/331 (16%)
Query: 751 LGLGALFGFILLLNVG-FALALTFLNQFEKPRAVITEEFESDEQ----DNRIGGTVQLSN 805
L LG L VG A + +L + P + E ++ R+ +
Sbjct: 254 LALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELL---- 309
Query: 806 CGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVP 865
+ + + G S+ F+ V +S
Sbjct: 310 -----------DEEPEVEDPPDPLKDTIG--------SIEFENVSFSYP----------- 339
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE 925
K +L +S + PG A++G SG+GK+TL+ +L +G+I I G +
Sbjct: 340 -GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGIDIRDI 396
Query: 926 TFA---RISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
+ + G Q+ + F T+ E++ E+ + E + L
Sbjct: 397 SLDSLRKRIGIVSQDPLL--FSGTIRENIALGRPDATDEEIEEALKLANAHEFIA--NLP 452
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
++VG GVN LS QR+RL IA L+ NP I+ +DE TS LD A++ ++
Sbjct: 453 DGYDTIVGERGVN-LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKL 511
Query: 1042 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ GRT + H+ S + D + ++ G
Sbjct: 512 LK-GRTTLIIAHRLS--TIKNADRIIVLDNG 539
|
Length = 567 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 3e-12
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 34/205 (16%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGDIRISGYP--- 921
D V+L+ +S +PG + ++G SG+GK+TL ++ Y+ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLAL 68
Query: 922 KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVME----- 976
R G Q E++ ++ +R + M +E V+E
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLA 115
Query: 977 -----LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1031
+ EL ++VG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 116 GAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 1032 AIVMRTVRNTVDTGRTVVCTIHQPS 1056
+MR + + GRTV+ H+ S
Sbjct: 175 HAIMRNMHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 4e-12
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 896 TTLMDVLAG--RKTGGYITGD-IRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFY 952
+TL+ ++ G + T G I D +G ++ RI G Q+ P +TV E+LF+
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRI-GVVFQDPQLFPELTVRENLFF 59
Query: 953 SAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVA 1012
+ EE +E V L V LS Q++R+ IA L+
Sbjct: 60 GL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALLK 107
Query: 1013 NPSIIFMDEPTS 1024
P ++ +DEPT+
Sbjct: 108 KPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 16/192 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG-----YPKKQET 926
L+ VS R G L G SGAGKTTL+ +L G T G +RI+G +Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 927 FARIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
R G Q+ P TVYE++ +R E + R + + V L+
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEH--- 129
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G
Sbjct: 130 KADAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 1046 RTVVCTIHQPSI 1057
TV+ H S+
Sbjct: 188 TTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 5e-12
Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 34/214 (15%)
Query: 881 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGY-P-KKQETFARISGYCEQ 936
G + +G +GAGK+T + +L G T G + R++G P +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV----RVNGKDPFRRREEYLRSIGLV-- 102
Query: 937 NDIHSPFVTVYESLFYSAWLRLPPEVNSETR----KMFIEEVMELVEL----KPLRQSLV 988
+ L++ EV F E + L E+ L+
Sbjct: 103 -------MGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWP-- 153
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 1047
V LS QR R +A L+ P ++F+DEPT GLD A A + ++ + T
Sbjct: 154 ----VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQAT 209
Query: 1048 VVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081
V+ T H DI D + L+ + G+ V+ G L
Sbjct: 210 VLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 5e-12
Identities = 73/267 (27%), Positives = 114/267 (42%), Gaps = 35/267 (13%)
Query: 816 RNSSSSLTEAEASHP-KKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNG 874
R S L E A P M LP +L+ + + P K +L G
Sbjct: 306 RQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTA-----------APPGQKKPILKG 354
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARIS 931
+S A + G ++G SG+GK+TL +L G +G +R+ G +Q E R
Sbjct: 355 ISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQLGRHI 412
Query: 932 GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIE-----EVMELVELKPL-RQ 985
GY Q D+ T+ E++ R E + E IE V EL+ P
Sbjct: 413 GYLPQ-DVELFDGTIAENI-----ARFGEEADPEK---VIEAARLAGVHELILRLPQGYD 463
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
+ +G G LS QR+R+ +A L +P ++ +DEP S LD+ A + + G
Sbjct: 464 TRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARG 522
Query: 1046 RTVVCTIHQPSIDIFEAFDELFLMKRG 1072
TVV H+PS + D++ +++ G
Sbjct: 523 GTVVVIAHRPS--ALASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 6e-12
Identities = 66/215 (30%), Positives = 99/215 (46%), Gaps = 23/215 (10%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQ 924
D L G++ G + AL+G +GAGK+TL G + T G + Y KK
Sbjct: 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKS 72
Query: 925 ETFARIS-GYCEQN---DIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEV-MELV 978
R + G QN + +P TV E + F L L E + K ++ V ME
Sbjct: 73 LLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGF 130
Query: 979 ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
E KP LS Q+KR+ IA L P II +DEPTSGLD A+ +M+ +
Sbjct: 131 ENKPPHH----------LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLL 180
Query: 1039 RNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1072
+ G T++ + H +D+ + D++++M G
Sbjct: 181 YDLNKEGITIIISTHD--VDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 8e-12
Identities = 52/202 (25%), Positives = 76/202 (37%), Gaps = 49/202 (24%)
Query: 156 HILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYN 215
+I S KK IL D+S + G + L G +GKTTL LAG + S SG + N
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLN 60
Query: 216 GHNMDEFVPERTAAYISQH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAG 274
G + ++ Y+ Q D + +VRE L
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLG------------------------ 96
Query: 275 IKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTT 334
+K E+A + LK L L + +SGGQK+R+
Sbjct: 97 ----------LKELDAGNEQAETV----LKDLDLYALK-----ERHPLSLSGGQKQRLAI 137
Query: 335 G-EMMVGPALALFMDEISTGLD 355
++ G L L DE ++GLD
Sbjct: 138 AAALLSGKDL-LIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 9e-12
Identities = 65/259 (25%), Positives = 99/259 (38%), Gaps = 68/259 (26%)
Query: 162 KKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG----H 217
KK + + VS VKPG +T LLGP +GKTT L LAG L+P +G T +G
Sbjct: 15 KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVK 71
Query: 218 NMDE------FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREK 271
E FV + T Y +T RE L + A G+
Sbjct: 72 EPAEARRRLGFVSDSTGLY--------DRLTARENLEYFAGLYGL--------------- 108
Query: 272 AAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKR 331
+G+E + LG++ D VG G S G +++
Sbjct: 109 -------------------KGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQK 144
Query: 332 VTTGEMMVGPALALFMDEISTGLD---SSTTFQIVNCFKQNIHINSGTAVISLLQPAPET 388
V +V L +DE +TGLD + + + + G ++ E
Sbjct: 145 VAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-----LGKCILFSTHIMQEV 199
Query: 389 YNLFDDIILLSDGQIVYQG 407
L D +++L G++VY+G
Sbjct: 200 ERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 9e-12
Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 16/217 (7%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ET 926
LL+ +S F G +T L+G +G+GK+TL+ +L GR G+I + P + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKA 82
Query: 927 FARISGYCEQNDIHSPFVTVYE--SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
FAR Y Q + +TV E ++ W + R+ +EE + LV LKPL
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREK-VEEAISLVGLKPLA 141
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVD 1043
LV + LS +R+R IA+ + + + +DEPTS LD V+ V R + +
Sbjct: 142 HRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE 196
Query: 1044 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
G TV+ +H I++ + + + RGG + G
Sbjct: 197 RGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 9e-12
Identities = 67/257 (26%), Positives = 112/257 (43%), Gaps = 59/257 (22%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-- 225
L +VS ++PG ++G SGK+TLL L G P+ G V +G ++ + P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADL 537
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
R Y+ Q D + T+R+ +A A P D +
Sbjct: 538 RRNIGYVPQ-DPRLFYGTLRDNIALGA-------------------------PYADDEEI 571
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG-PAL 343
++AA E A V GLD +G E R +SGGQ++ V ++ P +
Sbjct: 572 LRAA----ELAGVTEFVRRHPDGLD----MQIG-ERGRSLSGGQRQAVALARALLRDPPI 622
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI------SLLQPAPETYNLFDDIIL 397
L +DE ++ +D+ + + + K+ + +G ++ SLL L D II+
Sbjct: 623 -LLLDEPTSAMDNRSEERFKDRLKRWL---AGKTLVLVTHRTSLLD-------LVDRIIV 671
Query: 398 LSDGQIVYQGPRELVLE 414
+ +G+IV GP++ VLE
Sbjct: 672 MDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 9e-12
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 36/217 (16%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISGYPKK 923
+L VS G A++G SG+GK+T++ DV +G I I G +
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS---------ILIDGQDIR 66
Query: 924 ---QETFARISGYCEQ-----NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVM 975
++ R G Q ND T+ ++ Y EV + I +
Sbjct: 67 EVTLDSLRRAIGVVPQDTVLFND------TIGYNIRYGRPDATDEEVIEAAKAAQIHD-- 118
Query: 976 ELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
+++ ++VG G+ LS +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 119 KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1036 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+R V GRT + H+ S I A D++ ++K G
Sbjct: 178 AALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 1e-11
Identities = 63/246 (25%), Positives = 105/246 (42%), Gaps = 49/246 (19%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+L+DVS VKPG ++GP +GK+TLL A+ G L P+ SG + G +++
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKER-- 67
Query: 226 RTAAYISQHDNHIGEM--TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
+ Y+ Q + + +VR+ + G+ + LS+ +KA
Sbjct: 68 KRIGYVPQRRSIDRDFPISVRDVVLM-----GLYGHKGLFRRLSKADKAK---------- 112
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
+EA L+ +GL AD +G E+ SGGQ++RV +V
Sbjct: 113 --------VDEA-------LERVGLSELADRQIG-EL----SGGQQQRVLLARALVQDPD 152
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISL--LQPAPETYNLFDDIILLSDG 401
L +DE G+D T I ++ + T ++ L E FD ++LL +
Sbjct: 153 LLLLDEPFAGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVLE---YFDRVLLL-NR 207
Query: 402 QIVYQG 407
+V G
Sbjct: 208 TVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 65/249 (26%), Positives = 106/249 (42%), Gaps = 57/249 (22%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP--- 224
L +VS ++ G ++G SGK+TLL LAG P+ SG V +G ++ + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
R Y+ Q D + T+R+ + A P D +
Sbjct: 77 RRNIGYVPQ-DVTLFYGTLRDNITLGA-------------------------PLADDERI 110
Query: 285 MKAASTEGEEANVITDYYLK-VLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
++AA G +TD+ K GL D +G E RG+SGGQ++ V ++
Sbjct: 111 LRAAELAG-----VTDFVNKHPNGL----DLQIG-ERGRGLSGGQRQAVALARALLNDPP 160
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI-----SLLQPAPETYNLFDDIILL 398
L +DE ++ +D ++ ++ +Q + T +I SLL L D II++
Sbjct: 161 ILLLDEPTSAMDMNSEERLKERLRQ--LLGDKTLIIITHRPSLLD-------LVDRIIVM 211
Query: 399 SDGQIVYQG 407
G+IV G
Sbjct: 212 DSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 1e-11
Identities = 61/219 (27%), Positives = 95/219 (43%), Gaps = 27/219 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
L GVS G + AL+G +GAGKTTL+ + G R G I I+G P
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLP----PHE 74
Query: 929 RIS---GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV-ELKPLR 984
R Y + P +TV E+L A+ R + E ++ +EEV EL LK R
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYAR----RDKEAQERDLEEVYELFPRLKERR 130
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 131 NQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE 185
Query: 1045 GRTVVCTIHQPSIDIFEAF---DELFLMKRGGREVYVGP 1080
G + + Q + A D ++++ GR V G
Sbjct: 186 GGMTILLVEQ---NARFALEIADRGYVLEN-GRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-11
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 15/166 (9%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKK 923
V L+GVS + G L+G SG GKTTL+ ++AG T G I I+ P
Sbjct: 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-- 68
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
R QN P +TV+E++ + LRL ++ K + E ++LV+L+
Sbjct: 69 --PHKRPVNTVFQNYALFPHLTVFENIAFG--LRL-KKLPKAEIKERVAEALDLVQLEGY 123
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
+ LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 124 ANRK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 1e-11
Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 24/164 (14%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGDIRISGYPKKQETFA 928
L+ VS + G + +G +GAGK+T M ++ G Y+ +G +++ G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 929 --RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPE---VNSETRKMFIEEVMELVELKPL 983
R GY + H+P +Y ++ +L+ + + K +EE++ELV L+P
Sbjct: 73 VQRNIGYLPE---HNP---LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE 126
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
+ +G LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 17/172 (9%)
Query: 863 GVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP- 921
G E +L +L GV + G AL+G SG+GK+TL+ +LAG G +G++ + G P
Sbjct: 17 GQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQPL 74
Query: 922 ------KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVM 975
+ + A+ G+ Q+ + P + E++ A LR E + ++R
Sbjct: 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSR----NGAK 128
Query: 976 ELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
L+E L + L LP LS +++R+ +A P ++F DEPT LD
Sbjct: 129 ALLEQLGLGKRLDHLPA--QLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 63/232 (27%), Positives = 94/232 (40%), Gaps = 49/232 (21%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GDIRISGYPKKQET- 926
+N ++ G L+G SG+GKTT M + I G+I I G +++
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 927 --FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
R GY Q P +TV E++ L P++ ++ E EL+ L
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENI------ALVPKLLKWPKEKIRERADELLAL---- 120
Query: 985 QSLVGLPGVN-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1037
VGL LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 121 ---VGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRD 172
Query: 1038 ------VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGREVYVGP 1080
R + G+T+V H DI EAF D + +MK G P
Sbjct: 173 QLQEEFKRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNGEIVQVGTP 220
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI-S 380
RG+S Q+KR+T G + LF+DE ++GLDS + IV F + + +SG A++ +
Sbjct: 107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV-RFLKKL-ADSGQAILCT 164
Query: 381 LLQPAPETYNLFDDIILL-SDGQIVYQG 407
+ QP+ + FD ++LL G+ VY G
Sbjct: 165 IHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 2e-11
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF 222
T L D+S V+ G + LLGP +GKTTL+ + G L P SG + G ++ +
Sbjct: 11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKE 67
Query: 223 VPE--RTAAYISQHDNHIGEMTVRETLAF 249
E R Y+ + + +TVRE L
Sbjct: 68 PEEVKRRIGYLPEEPSLYENLTVRENLKL 96
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-11
Identities = 65/252 (25%), Positives = 106/252 (42%), Gaps = 47/252 (18%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
+L+D+S + PG ++G SGK+TLL L G P GR+ +G ++++
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLAS 544
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
R Y+ Q D + ++RE +A P+ +
Sbjct: 545 LRRQVGYVLQ-DPFLFSGSIRENIALGN-------------------------PEATDEE 578
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
++AA G ++ + L + DT VG E +SGGQ++R+ ++
Sbjct: 579 IIEAAQLAG-----AHEF---IENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKPK 629
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIH-INSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
L +DE ++ LD T I QN+ I G VI ++ T D II+L G+
Sbjct: 630 ILLLDEATSALDPETEAII----LQNLLQILQGRTVI-IIAHRLSTIRSADRIIVLDQGK 684
Query: 403 IVYQGPRELVLE 414
IV QG E +L
Sbjct: 685 IVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 64/251 (25%), Positives = 96/251 (38%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG---HNMDEF 222
I+ V PG LT LLGP SGK+TLL LAG L P +G V G H +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRR 71
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
R A + Q + +TVR+ +A L + R AG D D
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVA--------------LGRIPHRSLWAG---DSPHD 114
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
+ D L L AD + +SGG+++RV +
Sbjct: 115 A-------------AVVDRALARTELSHLADRDMST-----LSGGERQRVHVARALAQEP 156
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
L +DE + LD + + ++ +G V++ L + D +++L G+
Sbjct: 157 KLLLLDEPTNHLDVRAQLETLALVRE--LAATGVTVVAALHDLNLAASYCDHVVVLDGGR 214
Query: 403 IVYQGPRELVL 413
+V GP VL
Sbjct: 215 VVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 2e-11
Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 16/188 (8%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK-KQETFA 928
V++N +S G L+G +GAGK+T+ +L G + G I + G P + A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLA 75
Query: 929 RIS-GYCEQNDIHSPFVTVYESLF-YSAWLRLPPEVNSETRKMFIEEVM-ELVELKPLRQ 985
R++ G Q D P TV E+L + + + TR+ IE V+ L+E L +
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM------STRE--IEAVIPSLLEFARL-E 126
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
S + V LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G
Sbjct: 127 SKADVR-VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARG 185
Query: 1046 RTVVCTIH 1053
+T++ T H
Sbjct: 186 KTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 64/222 (28%), Positives = 94/222 (42%), Gaps = 40/222 (18%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGDIRISGY-------PKKQE 925
VS PG + ++G SG+GKTTL+ ++GR G +T +R ++
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84
Query: 926 TFARIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFI------------E 972
R G+ QN + V SA N R M I +
Sbjct: 85 RLLRTEWGFVHQNPRDGLRMQV------SA------GGNIGERLMAIGARHYGNIRAEAQ 132
Query: 973 EVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
+ +E VE+ R + LP S ++RL IA LV P ++FMDEPT GLD A
Sbjct: 133 DWLEEVEIDLDR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQA 188
Query: 1033 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073
++ +R V + G VV H ++ A D L +MK+G
Sbjct: 189 RLLDLLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-11
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 16/153 (10%)
Query: 881 PGV-LTALMGVSGAGKTTLMDVLAG--RKTGG--YITGDIRISGYPKKQ-ETFARISGYC 934
PG +TA+ G SG+GKTTL+ ++AG R G + G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 935 EQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994
Q P ++V +L Y P E R++ E V+EL+ + L L G
Sbjct: 81 FQEARLFPHLSVRGNLRYGMKRARPSE-----RRISFERVIELLGIGHLLGRLPG----- 130
Query: 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-11
Identities = 56/167 (33%), Positives = 82/167 (49%), Gaps = 27/167 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIR-ISGYPKKQETFA 928
L +S + + G L+G SG GKTTL+ ++AG R+T G I R I+ P ++ +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY- 78
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV-ELKPLRQSL 987
G Q+ P +TV +++ Y + R M EV E V EL L
Sbjct: 79 ---GIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERVAEL----LDL 121
Query: 988 VGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
VGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 2e-11
Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 18/179 (10%)
Query: 882 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQND-IH 940
G + AL+GV+G+GK+TL L G +G I I G P +Q + Y Q++ +
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 941 SPFVTVYESLF------YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994
F + E + + WLR + + + + + V++ R +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI----VTAALARVDMVEFRHRQIG----- 141
Query: 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1053
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 64/263 (24%), Positives = 113/263 (42%), Gaps = 60/263 (22%)
Query: 161 TKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMD 220
++ + ILK +S + PG+ L+G GK+T++ L DP+ SG + +G ++
Sbjct: 12 SRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIR 68
Query: 221 EFVPE---RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP 277
+ +SQ + + + T+ E + + KP
Sbjct: 69 DLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRYG-------------------------KP 102
Query: 278 DPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTG 335
D + +AA ++AN I D+ ++ L DT+VG+ RG SGGQK+R+
Sbjct: 103 DATDEEVEEAA----KKAN-IHDF---IMSLPDGYDTLVGE---RGSQLSGGQKQRIAIA 151
Query: 336 EMMV-GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI----SLLQPAPETYN 390
++ P + L +DE ++ LD+ + + T VI S ++ A
Sbjct: 152 RALLRNPKI-LLLDEATSALDAESEKLVQEAL-DRAMKGRTTIVIAHRLSTIRNA----- 204
Query: 391 LFDDIILLSDGQIVYQG-PRELV 412
D I +L +GQ+V QG EL+
Sbjct: 205 --DLIAVLQNGQVVEQGTHDELM 225
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 3e-11
Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 52/195 (26%)
Query: 159 PSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218
+T L+D+S V+ G L+GP GK+TLL +AG P+ SG V +G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP 67
Query: 219 MDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPD 278
+ P Y+ Q D + +TV + +A QGV RE+A
Sbjct: 68 VTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA-------EARERAEE---- 114
Query: 279 PDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRV----TT 334
L+++GL + +SGG ++RV
Sbjct: 115 -----------------------LLELVGLSGFENAYPHQ-----LSGGMRQRVALARA- 145
Query: 335 GEMMVGPALALFMDE 349
+ V P + L +DE
Sbjct: 146 --LAVDPDV-LLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-11
Identities = 53/235 (22%), Positives = 88/235 (37%), Gaps = 46/235 (19%)
Query: 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPS---LKVSGRVTYNGH-NMDEFVPERTAAYIS 232
+T + G +GK+TLL +AG P + ++G V ++ ++ +R +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 233 QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEG 292
Q + VRE LAF + + + EL
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVDEL-------------------------- 115
Query: 293 EEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEIST 352
L +LGLD + +SGG+K+RV + L +DE +
Sbjct: 116 ----------LDLLGLDHLLNRYPA-----QLSGGEKQRVALARALAAQPELLLLDEPFS 160
Query: 353 GLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG 407
LD + Q++ KQ I N VI + E L D I+++ DG++ Y G
Sbjct: 161 ALDRALRLQLLPELKQ-IKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 3e-11
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARI 930
L VS G L ++G SG GKTTL++++AG T G I+++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 931 SGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-RQSLVG 989
G QN+ P++ V +++ + LR + R+ +++ LV L+ + +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQ 132
Query: 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
L G R+R+ IA L P ++ +DEP LDA
Sbjct: 133 LSG------GMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 64/221 (28%), Positives = 98/221 (44%), Gaps = 30/221 (13%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924
P D +L +S G AL+G SG+GK+TL++++ + +G I I G+ +
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRD 68
Query: 925 ETFA---RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
T A R G Q D+ TV E++ Y P TR EEV E
Sbjct: 69 YTLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR-----PG---ATR----EEVEEAARAA 115
Query: 982 PLRQSLVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
+ ++ LP G G LS QR+R+ IA L+ +P I+ +DE TS LD +
Sbjct: 116 NAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESER 175
Query: 1033 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073
+V + + RT H+ S I A D + +++ G
Sbjct: 176 LVQAALERLMK-NRTTFVIAHRLST-IENA-DRIVVLEDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-11
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 41/194 (21%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-- 225
L+ VS V PG L+GP +GK+TLL L G +DP+ G + NG + + +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
A++ QH + T+ E + A + + E+ + AG+
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIRLA---RPDASD----AEIREALERAGL--------- 437
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA 344
D ++ L + DT +G+ G+SGGQ +R+ + A
Sbjct: 438 ---------------DEFVAALPQGL--DTPIGEG-GAGLSGGQAQRLALARAFLRDAPL 479
Query: 345 LFMDEISTGLDSST 358
L +DE + LD+ T
Sbjct: 480 LLLDEPTAHLDAET 493
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-11
Identities = 60/241 (24%), Positives = 99/241 (41%), Gaps = 46/241 (19%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP- 224
T L D++ + G +LLGP GKTT L +AG +P+ SGR+ G ++ + P
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPK 70
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRR-EKAAGIKPDPDIDV 283
+R A + Q+ MTV + +AF + + V E+ R + A
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKD-----EIDERVREVA---------- 115
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
++L ++ + D + +SGGQ++RV G +V
Sbjct: 116 --------------------ELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVREPK 150
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403
MDE + LD+ Q+ K + GT I + E + D I +++DGQI
Sbjct: 151 VFLMDEPLSNLDAKLRVQMRAELK-RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
Query: 404 V 404
Sbjct: 210 Q 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 5e-11
Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 29/163 (17%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
+N +S + L+G +GAGK+TL+ ++ G R T +G+I G+P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL-----KPLR 984
I E ++ +T E+L L P+ S I+EV+ +V+L K +
Sbjct: 72 IGSLIESPPLYEN-LTARENLKVHTTLLGLPD--SR-----IDEVLNIVDLTNTGKKKAK 123
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
Q +G+ ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 124 QFSLGM----------KQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 5e-11
Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 18/223 (8%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISG---YPKKQ 924
++GVS + G + ++G SG+GK+ L + G K I G+I G +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 925 ETFARISG----YCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
+ +I G Q+ + S P +T+ + + L E ++ E++ELV
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKER-AIELLELV 138
Query: 979 ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
+ + L P + LS R+R+ IA+ L NP ++ DEPT+ LD A ++ +
Sbjct: 139 GIPDPERRLKSYP--HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLL 196
Query: 1039 RNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
+ + G ++ H + + E D + +M GR V GP
Sbjct: 197 KELQREKGTALILITHDLGV-VAEIADRVAVMY-AGRIVEEGP 237
|
Length = 316 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 5e-11
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 19/164 (11%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK------TGGYITGDIRISGYPKKQ 924
LL V+ G + LMG SG GK+TL+ + G TG + R+ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 925 ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
R G Q+ + P ++V ++L ++ LP + R+ +E L
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
P LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQ---DPAT--LSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 6e-11
Identities = 59/188 (31%), Positives = 91/188 (48%), Gaps = 16/188 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
+N VS G + L+G +GAGKTT ++ G R G I D I+ P + A
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR--A 77
Query: 929 RIS-GYCEQNDIHSPF--VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
R+ GY Q S F +TV +++ +R +E RK ++ ++E + LR
Sbjct: 78 RLGIGYLPQE--ASIFRKLTVEDNIMAVLEIREKDLKKAE-RKEELDALLEEFHITHLRD 134
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
S + LS +R+R+ IA L ANP I +DEP +G+D A + R +++ D G
Sbjct: 135 S----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRG 189
Query: 1046 RTVVCTIH 1053
V+ T H
Sbjct: 190 IGVLITDH 197
|
Length = 243 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 6e-11
Identities = 68/209 (32%), Positives = 98/209 (46%), Gaps = 42/209 (20%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTL------MDVLAGRKTGGYITGDIRISG---YPK 922
LN VS F P +TAL+G SG+GK+TL M+ L T ITG I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 923 KQETF---ARISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
+ +T I +Q + PF +++YE++ Y LRL K ++E +E
Sbjct: 78 RTDTVDLRKEIGMVFQQPN---PFPMSIYENVVYG--LRL----KGIKDKQVLDEAVEKS 128
Query: 979 --------ELKP-LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
E+K L S +GL G Q++R+ IA L +P II +DEPTS LD
Sbjct: 129 LKGASIWDEVKDRLHDSALGLSG------GQQQRVCIARVLATSPKIILLDEPTSALDPI 182
Query: 1030 AAAIVMRTVRNTVD--TGRTVVCTIHQPS 1056
+A + T+ D T V ++ Q S
Sbjct: 183 SAGKIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 7e-11
Identities = 71/270 (26%), Positives = 112/270 (41%), Gaps = 69/270 (25%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKV-SGRVTYNGHNMDEFVP 224
++DVS V+PG + ++G SGK+TL LAL G L ++ SG V +G ++
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 225 E-------RTAAYISQHDNHI--GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275
+ A I Q MT+ + + A R G G+R E R++A
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAE------ARKRAV-- 134
Query: 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG 335
L+ +GL D D +SGG ++RV
Sbjct: 135 -------------------------ELLEQVGLP---DPERRDRYPHQLSGGMRQRV--- 163
Query: 336 EMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYN 390
M+ ALA L DE +T LD +T QI++ K ++ G AV+ + T++
Sbjct: 164 --MIAMALALKPKLLIADEPTTALDVTTQAQILDLLK-DLQRELGMAVLFI------THD 214
Query: 391 L------FDDIILLSDGQIVYQGPRELVLE 414
L D ++++ G+IV GP E +L
Sbjct: 215 LGVVAELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 7e-11
Identities = 68/279 (24%), Positives = 103/279 (36%), Gaps = 96/279 (34%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T+L DVS ++PG + +LGP +GK+TLL AL+G+L P SG V NG + ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPA 72
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
A A + QH +L+F + V
Sbjct: 73 ELARRRAVLPQH----------SSLSFPFTVEEV-------------------------- 96
Query: 283 VFMKAA--STEGEEANVITDYYLKVLGLDICADTMVGDEMR--RGVSGGQKKRVTTGEMM 338
V M A E + + L + L A R +SGG+++RV
Sbjct: 97 VAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-------RDYPQLSGGEQQRV------ 143
Query: 339 VGPALA---------------LFMDEISTGLDSS---TTFQIV-NCFKQNIHINSGTAVI 379
LA L +DE ++ LD + ++ + G AVI
Sbjct: 144 ---QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-----GLAVI 195
Query: 380 SLL----QPAPETYNLF-DDIILLSDGQIVYQGPRELVL 413
+L A + D I+LL G++V G VL
Sbjct: 196 VVLHDLNLAA-----RYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 9e-11
Identities = 68/267 (25%), Positives = 117/267 (43%), Gaps = 52/267 (19%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-R 226
LK+VS V+ G ++LGP SGK+ LL +AG + P SG++ NG ++ PE R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
+Y+ Q+ MTV + +A+ + + V ++E +
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKV----------DKKEIERKVL---------- 111
Query: 287 AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALF 346
E A ++LG+D + + +SGG+++RV +V L
Sbjct: 112 ------EIA--------EMLGID-----HLLNRKPETLSGGEQQRVAIARALVVNPKILL 152
Query: 347 MDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQ 406
+DE + LD T ++ K+ I G V+ + E + L D + ++ +G+++
Sbjct: 153 LDEPFSALDVRTKEKLREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211
Query: 407 GPRELVLEFFESMGFKCPKRKGVADFL 433
G E V FK PK + VA+FL
Sbjct: 212 GKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 61/254 (24%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
L DVS V+PGR LLGP +GK+TL L G+++ GH++ P
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAA 72
Query: 228 AAYIS---QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
A + Q +++VR+ L + A G LSR E A I
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHG----------LSRAEARARIAEL------ 116
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV-GPAL 343
L LGL AD V R ++GG ++RV ++ PAL
Sbjct: 117 ------------------LARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPAL 153
Query: 344 ALFMDEISTGLDSSTTFQIVN-----CFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398
L +DE + GLD ++ I Q + + T ++ ++ D +++L
Sbjct: 154 -LLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVL 205
Query: 399 SDGQIVYQG-PREL 411
G+++ G EL
Sbjct: 206 HRGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 57/250 (22%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
+L+D+S + G L+GP SGK+TL+ + D SGR+ +GH++ ++
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLAS 73
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
R +SQ D + TV E +A+ +P +
Sbjct: 74 LRRQIGLVSQ-DVFLFNDTVAENIAYG-------------------------RPGATREE 107
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTGEMMVGP 341
+AA AN ++ ++ L DT++G+ RGV SGGQ++R+ ++
Sbjct: 108 VEEAA----RAANA-HEF---IMELPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKD 156
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI----SLLQPAPETYNLFDDIIL 397
L +DE ++ LD+ + + + + N T VI S ++ A D I++
Sbjct: 157 PPILILDEATSALDTESERLVQAAL-ERLMKNRTTFVIAHRLSTIENA-------DRIVV 208
Query: 398 LSDGQIVYQG 407
L DG+IV +G
Sbjct: 209 LEDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 21/220 (9%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIT--GDIRISGYPKKQET 926
+L +S PG A++G +GAGKTTL+ +L G + G +T G G E
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKG-ETIFEL 104
Query: 927 FARISGYC--EQNDIHSPFVTVYESLFYSAW---LRLPPEVNSETRKMFIEEVMELVELK 981
RI G E ++ TV + + S + + + E + + ++EL+ K
Sbjct: 105 RKRI-GLVSSELHERFRVRETVRDVV-LSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK 162
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-- 1039
L G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 163 HLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEEL 217
Query: 1040 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
++ H +I F L+K G V G
Sbjct: 218 AASPGAPALLFVTHHAE-EIPPCFTHRLLLK-EGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 1e-10
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 13/206 (6%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFA 928
+L G++ F +T L+G +G GK+TL L+G R G + + Y K+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 929 RIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
R Q+ F T +S + L TR+ ++E + LV+ + R
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR--VDEALTLVDAQHFRHQ- 132
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G
Sbjct: 133 ----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNH 188
Query: 1048 VVCTIHQPSID-IFEAFDELFLMKRG 1072
V+ + H ID I+E D ++++++G
Sbjct: 189 VIISSH--DIDLIYEISDAVYVLRQG 212
|
Length = 271 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 24/198 (12%)
Query: 863 GVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGY 920
D L +G+S G + G +G+GKTTL+ +LAG G + ++G
Sbjct: 7 TCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGRVLLNGG 62
Query: 921 PKKQE--TFARISGYCEQNDIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEVMEL 977
P + + AR Y ++V E+L F+ A +S+ + +EE +
Sbjct: 63 PLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHA-------DHSDEQ---VEEALAR 112
Query: 978 VELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1037
V L P V LS Q++R+ +A L++ + +DEPT+ LD A
Sbjct: 113 VGLNGFED----RP-VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEA 167
Query: 1038 VRNTVDTGRTVVCTIHQP 1055
+ G VV T HQ
Sbjct: 168 MAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 53/194 (27%), Positives = 78/194 (40%), Gaps = 51/194 (26%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGH----NMDEF 222
L VS + PG + LLGP +GKTTL+ LA PS SG + +G +
Sbjct: 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKL 70
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
R Y+ Q TVRE L + A +G+ S+ KA
Sbjct: 71 --RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP---------SKEVKAR--------- 110
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG-P 341
D L+++ L A +G +SGG ++RV + +VG P
Sbjct: 111 ----------------VDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDP 149
Query: 342 ALALFMDEISTGLD 355
++ L +DE + GLD
Sbjct: 150 SI-LIVDEPTAGLD 162
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 2e-10
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 49/182 (26%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISG---YP 921
L ++ +TAL+G SG GK+TL+ D++ G + + G++ + G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNIYD 78
Query: 922 KKQETFA---RISGYCEQ--NDIHSPFV-TVYESLFYSAWLRLPPEVNSETRKMFIEEVM 975
K + R+ G Q N PF ++Y+++ Y LRL + E +
Sbjct: 79 PKVDVVELRRRV-GMVFQKPN----PFPMSIYDNVAYG--LRLHGIKDKE--------LD 123
Query: 976 ELVELKPLRQSLVGL----------PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025
E+VE L++ L GLS Q++RL IA L P ++ MDEPTS
Sbjct: 124 EIVE-SSLKK--AALWDEVKDRLHKSA-LGLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
Query: 1026 LD 1027
LD
Sbjct: 180 LD 181
|
Length = 253 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 59/216 (27%), Positives = 92/216 (42%), Gaps = 35/216 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GDIRISGYPKKQE--- 925
++ V+ G L+G SG+GKTT + + I G+I I G
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDGEDISDLDPV 71
Query: 926 TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPE---VNSETRKMFIEEVMELVELKP 982
R GY Q P +TV E++ P+ + E K +E+++LV L P
Sbjct: 72 ELRRKIGYVIQQIGLFPHLTVAENI------ATVPKLLGWDKERIKKRADELLDLVGLDP 125
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVR 1039
+ P + LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 126 -SEYADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQ 182
Query: 1040 NTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1072
G+T+V H DI EA D + +M G
Sbjct: 183 KE--LGKTIVFVTH----DIDEALKLADRIAVMDAG 212
|
Length = 309 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 2e-10
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 977 LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
+ EL + VG G N LS QR+R+ IA LV NP I+ DE TS LD + A++MR
Sbjct: 576 ISELPQGYNTEVGEKGAN-LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMR 634
Query: 1037 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+R + GRTV+ H+ + A D + ++++G
Sbjct: 635 NMR-EICRGRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-10
Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 39/199 (19%)
Query: 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQET 926
+V + VS + + G + AL+G +GAGK+TLM +L G + G+IR+ G
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS----GEIRVDGKE----- 67
Query: 927 FARISGYCEQND--------IHSPFV-----TVYESLFYSAWLRLPPEVN-SETRKMFIE 972
RI D +H F+ TV E++ ++ + R I+
Sbjct: 68 -VRIKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-IK 122
Query: 973 EVMEL--VELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
E+ E + + P + V LS +++R+ I L ++ +DEPT+ L +
Sbjct: 123 ELSERYGLPVDPDAK-------VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE 175
Query: 1031 AAIVMRTVRNTVDTGRTVV 1049
A + +R G+T++
Sbjct: 176 ADELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 54/213 (25%), Positives = 97/213 (45%), Gaps = 18/213 (8%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETF 927
+L GVS + G + A++G SG+GK+TL+ +L G +G++ +G + +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 928 ARISGYCEQNDIHSPFVTVYESLF--YSAW--LRLPPEVNSETRKMFIEEVMELVELKPL 983
+ + + F+ + L ++A + +P + ++ K E E++E L
Sbjct: 75 NERA---KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL 131
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRTVRN 1040
+ P LS +R+R+ IA LV PS++ DEPT LD A I+ M +
Sbjct: 132 EHRINHRPS--ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189
Query: 1041 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073
++T VV H ++ + D + MK G
Sbjct: 190 ELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 887 LMGVSGAGKTTLMDVLAG--RKTGGYI-TGDIRISGYPKKQETFARISGYCEQNDIHSPF 943
L+G SG GKTT + ++AG T G I G ++ P K A + QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVF----QNYALYPH 86
Query: 944 VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003
+TVY+++ + LR P+ + R + EV EL++++ L LS QR+R
Sbjct: 87 MTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHLLDRKP-----KQLSGGQRQR 138
Query: 1004 LTIAVELVANPSIIFMDEPTSGLDAR 1029
+ + +V P + MDEP S LDA+
Sbjct: 139 VALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 3e-10
Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 26/225 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGD-IRISGYPKKQETFARI 930
L+ V G + AL+G SG+GK+TL+ L+G TG G I + G ++E R+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE--GRL 77
Query: 931 SGYCEQNDIHSPFV----------TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL 980
+ ++ ++ ++ +V E++ A P T + + L
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTP---FWRTCFSWFTREQKQRAL 134
Query: 981 KPLRQSLVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
+ L + VG+ V+ LS Q++R+ IA L+ +I DEP + LD +A IVM
Sbjct: 135 QALTR--VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM 192
Query: 1036 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
T+R+ G TVV T+HQ +D + E + R G Y G
Sbjct: 193 DTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-10
Identities = 62/211 (29%), Positives = 99/211 (46%), Gaps = 26/211 (12%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFA 928
L+ S +PG AL+G SG+GK+T+ ++AG + G +I G P+++
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 929 RISG---YCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSE--TRKMFIEEVMELVELKPL 983
++ +Q DI TV ++L + W P+ + + I +V +
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDV--ITSRPGG 604
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
+ + G N LS QR+RL IA LV NPSI+ +DE TS LD I+ +R
Sbjct: 605 YDAELAEGGAN-LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--- 660
Query: 1044 TGRTVVCTI--HQPSIDIFEAFDELFLMKRG 1072
R C I H+ S I + DE+ +++RG
Sbjct: 661 --RGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 3e-10
Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 24/210 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGDIRISGYPKKQETFA 928
L GVS G +T ++G +G GKTTL+ L G K+G I+ P
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----PHE 71
Query: 929 RIS---GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV-ELKPLR 984
R Y Q P +TV E+L ++ + + EL P+
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENL----------LTGLAALPRRSRKIPDEIYELFPVL 121
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
+ ++G G + LS Q+++L IA LV P ++ +DEPT G+ + R +R
Sbjct: 122 KEMLGRRGGD-LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE 180
Query: 1045 GRTVVCTIHQPSIDI-FEAFDELFLMKRGG 1073
G + + Q +D E D ++M+RG
Sbjct: 181 GGMAILLVEQ-YLDFARELADRYYVMERGR 209
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-10
Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 28/212 (13%)
Query: 856 PQQMKLQGV----PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 911
Q ++L+ V P + L + G A++G SG+GK+TL+ +LAG
Sbjct: 334 GQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQ 391
Query: 912 TGDIRISGYP----KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETR 967
G I ++G +Q IS ++ + S T+ ++L + P+ + E
Sbjct: 392 QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG--TLRDNLRLAN-----PDASDEE- 443
Query: 968 KMFIEEVMELVEL-KPLRQSLVGLP-----GVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021
+ ++ V L K L + GL G LS +R+RL +A L+ + + +DE
Sbjct: 444 ---LWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDE 500
Query: 1022 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1053
PT GLD V+ + + G+T++ H
Sbjct: 501 PTEGLDPITERQVLALLFEHAE-GKTLLMVTH 531
|
Length = 573 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 4e-10
Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 48/218 (22%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE 925
EDK +L GV+ + G + A+MG +G+GK+TL +AG + +G I G Q+
Sbjct: 11 EDKEIL-KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QD 65
Query: 926 TFARISGYCEQNDIHSPFVTVYE----SLFYSAWLRLPPEVNSETRKMFI---------- 971
+ E LF + + P E+ + F+
Sbjct: 66 LLE---------------LEPDERARAGLFLA--FQYPEEIPGVSNLEFLRSALNARRSA 108
Query: 972 --EEVMELVELKPLRQ---SLVGLP------GVN-GLSTEQRKRLTIAVELVANPSIIFM 1019
EE ++L++ L + +L+G+ VN G S ++KR I + P + +
Sbjct: 109 RGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAIL 168
Query: 1020 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1057
DE SGLD A IV + + R+ + H +
Sbjct: 169 DEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 4e-10
Identities = 59/223 (26%), Positives = 102/223 (45%), Gaps = 19/223 (8%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVL--AGRKTGGYITGDIR-ISGYPK 922
+ VS PG + ++G SG+GK+T LM +L GR T G + D R + G +
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 923 KQET--FARISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
++ + Q+ + S P +T+ + + + L +E RK E++E V
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSR-AEARKR-AVELLEQV 140
Query: 979 ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
L P + P + LS R+R+ IA+ L P ++ DEPT+ LD A ++ +
Sbjct: 141 GL-PDPERRDRYP--HQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLL 197
Query: 1039 RN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
++ + G V+ H + + E D + +M + G V GP
Sbjct: 198 KDLQRELGMAVLFITHDLGV-VAELADRVVVMYK-GEIVETGP 238
|
Length = 539 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 4e-10
Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 32/190 (16%)
Query: 863 GVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIT-GDIRISG 919
G P +K L NG+S G ++G +GAGK+TL++ +AG T G I + ++
Sbjct: 14 GTPLEKRAL-NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTK 72
Query: 920 YPKKQ--ETFARI-----SGYCEQNDIHSPFVTVYESLFYSAWLR------LPPEVNSET 966
+ AR+ +G P +T+ E+L + L +N
Sbjct: 73 KSVAKRANLLARVFQDPLAGTA-------PELTIEENL--ALAESRGKKRGLSSALNERR 123
Query: 967 RKMFIEEVMELVE-LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025
R F E + L L+ +GL LS QR+ L++ + + P I+ +DE T+
Sbjct: 124 RSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAA 178
Query: 1026 LDARAAAIVM 1035
LD + A VM
Sbjct: 179 LDPKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 4e-10
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 12/206 (5%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-ETFA 928
+L+ +S G L AL+G SG GKTTL+ +AG +TG I I+
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
R QN P + V +++ + + P+ + R + + ++LV L
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLGDAAAH-- 133
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GR 1046
LP LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 134 -LP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRG 1072
T++C H D D+ +MK G
Sbjct: 191 TILCVTHDQD-DALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 5e-10
Identities = 63/292 (21%), Positives = 114/292 (39%), Gaps = 87/292 (29%)
Query: 155 LHI-LPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGR 211
L + P+ + + VS +K G + ++G SGK+ L A+ G L + V G
Sbjct: 7 LSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGE 66
Query: 212 VTYNGHNMDEFVPERTA-------AYISQHD-----NHIGEMTVRETLAFAARCQGVGTR 259
+ ++G ++ + A I Q D N + MT+ + +A R
Sbjct: 67 ILFDGKDLLSLSEKELRKIRGKEIAMIFQ-DPMTSLNPV--MTIGDQIAEVLR-----LH 118
Query: 260 YEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319
+ L++ +E+A L+++G+ D
Sbjct: 119 GKGLSKKEAKERAI---------------------------ELLELVGIP--------DP 143
Query: 320 MRRG------VSGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQ 368
RR +SGG ++RV M+ ALA L DE +T LD + QI++ K+
Sbjct: 144 ERRLKSYPHELSGGMRQRV-----MIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE 198
Query: 369 NIHINSGTAVI------SLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 414
+ GTA+I ++ + D + ++ G+IV +GP E + +
Sbjct: 199 -LQREKGTALILITHDLGVV------AEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 5e-10
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 20/152 (13%)
Query: 881 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFA---RISGYCE 935
G+ TAL G SG+GKT+L++++AG R G I + R+ +K R GY
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82
Query: 936 QNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG 995
Q+ P TV +L Y W ++ + ++++ L+ ++ L L PG
Sbjct: 83 QDARLFPHYTVRGNLRYGMW---------KSMRAQFDQLVALLGIEHL---LDRYPGT-- 128
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 5e-10
Identities = 65/218 (29%), Positives = 97/218 (44%), Gaps = 34/218 (15%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L V+ PG + AL+G +GAGK+TLM VL+G T G IT I Y K A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTIT--INNINYNKLDHKLAA 78
Query: 930 ISG----YCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
G Y E + I +TV E+L+ R T+K+ +++ E++
Sbjct: 79 QLGIGIIYQELSVIDE--LTVLENLYIG---RHL------TKKVCGVNIIDWREMRVRAA 127
Query: 986 SL---VGL-----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA---IV 1034
+ VGL V LS ++ L IA L+ + +I MDEPTS L + ++
Sbjct: 128 MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI 187
Query: 1035 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
M +R G +V H+ + +I D +MK G
Sbjct: 188 MNQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 7e-10
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T L +VS +K G + L+GP SGK+TLL A+AG L P+ SG + +G ++ + E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLE 69
Query: 226 ---RTAAYISQ 233
R Y+ Q
Sbjct: 70 ELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 9e-10
Identities = 53/217 (24%), Positives = 72/217 (33%), Gaps = 51/217 (23%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T+ D+S + G + GP +GKTTLL LAG L P +G V + G + E
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNV-RE 71
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
Y+ E+T E L F AA I
Sbjct: 72 SYHQALLYLGHQPGIKTELTALENLHF-------------WQRFHGSGNAATI------- 111
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
EA L +GL D VG +S GQ++RV + + PA
Sbjct: 112 ----------WEA-------LAQVGLAGLEDLPVGQ-----LSAGQQRRVALARLWLSPA 149
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI 379
+DE T LD + H G V+
Sbjct: 150 PLWILDEPFTALDKEGVALLTALMAA--HAAQGGIVL 184
|
Length = 209 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 9e-10
Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 57/245 (23%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
L+DVS + G L ++LGP GKTTLL +AG + PS G + NG ++ ER
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAER 76
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
+ Q++ + + V + +AF + +G+ RRE A
Sbjct: 77 --GVVFQNEALLPWLNVIDNVAFGLQLRGIEKA-------QRREIA-------------- 113
Query: 287 AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE-MMVGPALAL 345
L ++GL+ + +SGG ++RV + V P L L
Sbjct: 114 -------------HQMLALVGLEGAEHKYIWQ-----LSGGMRQRVGIARALAVEPQL-L 154
Query: 346 FMDEISTGLDSSTTFQI----VNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS-- 399
+DE LD+ T Q+ ++ +++ +G V+ + E L +++LS
Sbjct: 155 LLDEPFGALDALTREQMQELLLDLWQE-----TGKQVLLITHDIEEALFLATRLVVLSPG 209
Query: 400 DGQIV 404
G++V
Sbjct: 210 PGRVV 214
|
Length = 259 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 52/220 (23%), Positives = 89/220 (40%), Gaps = 51/220 (23%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
L ++ + G L+GP +GK+TLL + + P+ SG + NG ++ + R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDL-RGRA 72
Query: 228 AAYISQH------DNH-IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
Y+ + D + + V E +AFA GV R E+ +R AA
Sbjct: 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA------- 120
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
L+++GL + +SGG+++RV +V
Sbjct: 121 ----------------------LELVGLSHKHRALPA-----ELSGGEQQRVAIARAIVN 153
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVIS 380
L DE + LD TT++I+N K+ I+ T V++
Sbjct: 154 SPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 64/247 (25%), Positives = 100/247 (40%), Gaps = 46/247 (18%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM--DEFVPE 225
++ VS V+ G + LLGP +GKTT + L L P+ SGR T GH++ +
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
R + Q + E+T E L AR GV RRE+
Sbjct: 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-------ERRERI------------- 112
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALAL 345
+E L +GL AD +V + SGG ++R+ +V L
Sbjct: 113 -------DEL-------LDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVL 153
Query: 346 FMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVY 405
F+DE + GLD T + ++ + G ++ E L D + ++ G+I+
Sbjct: 154 FLDEPTIGLDPQTRAHVWEYIEK-LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212
Query: 406 QG-PREL 411
+G P EL
Sbjct: 213 EGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-09
Identities = 72/270 (26%), Positives = 106/270 (39%), Gaps = 78/270 (28%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMD----EFV 223
+ DVS ++ G L+G SGK+TL LAG L PS SG + ++G ++D E
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELR 363
Query: 224 P-ERTAAYISQH-----DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP 277
R + Q + MTV + LA R G G+ E RR + A +
Sbjct: 364 RLRRRIQMVFQDPYSSLNPR---MTVGDILAEPLRIHGGGSGAE------RRARVAEL-- 412
Query: 278 DPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM 337
L+++GL D +SGGQ++RV
Sbjct: 413 -------------------------LELVGL----PPEFLDRYPHELSGGQRQRVA---- 439
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAV--IS-----LLQPA 385
+ ALA L +DE + LD S Q++N K + G IS + A
Sbjct: 440 -IARALALEPKLLILDEPVSALDVSVQAQVLNLLKD-LQEELGLTYLFISHDLAVVRYIA 497
Query: 386 PETYNLFDDIILLSDGQIVYQGPRELVLEF 415
D + ++ DG+IV +GP E V E
Sbjct: 498 -------DRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-09
Identities = 71/304 (23%), Positives = 111/304 (36%), Gaps = 79/304 (25%)
Query: 162 KKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE 221
+T L DVS + G + ++G +GK+TLL + P+ SG V +G ++
Sbjct: 16 TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTA 72
Query: 222 FVPE------RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275
+ I QH N + TV E +AF GV + E +
Sbjct: 73 LSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV----------PKAEIKQRV 122
Query: 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR---GVSGGQKKRV 332
L+++GL D+ R +SGGQK+RV
Sbjct: 123 AE------------------------LLELVGLS--------DKADRYPAQLSGGQKQRV 150
Query: 333 TTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINS--GTAVISLLQPA 385
+ ALA L DE ++ LD TT I+ K IN G ++ L+
Sbjct: 151 A-----IARALANNPKILLCDEATSALDPETTQSILELLKD---INRELGLTIV-LITHE 201
Query: 386 PE-TYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQ 444
E + D + +L G++V +G V E F + PK +F+ E E+
Sbjct: 202 MEVVKRICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGETLEIDLPEE 253
Query: 445 YWAH 448
Sbjct: 254 LLER 257
|
Length = 339 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 47/251 (18%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
IL ++S +KPG + ++G SGK+TL + P +GRV +GH++ P
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAW 73
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
R + Q +N + ++R+ +A A P ++
Sbjct: 74 LRRQVGVVLQ-ENVLFNRSIRDNIALA-------------------------DPGMSMER 107
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
++AA G + L DT+VG E G+SGGQ++R+ ++
Sbjct: 108 VIEAAKLAGAHDFI--------SELPEGYDTIVG-EQGAGLSGGQRQRIAIARALIHNPR 158
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIH-INSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
L DE ++ LD + I+ +N+H I +G VI ++ T D II++ G+
Sbjct: 159 ILIFDEATSALDYESEHAIM----RNMHDICAGRTVI-IIAHRLSTVKNADRIIVMEKGR 213
Query: 403 IVYQGPRELVL 413
IV QG + +L
Sbjct: 214 IVEQGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 64/257 (24%), Positives = 104/257 (40%), Gaps = 50/257 (19%)
Query: 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV 223
+LKDVS + G+ ++GP SGK+T+L L D S SG + +G ++ E
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVT 69
Query: 224 PE---RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ R + Q D + T+ + + +PD
Sbjct: 70 LDSLRRAIGVVPQ-DTVLFNDTIGYNIRYG-------------------------RPD-- 101
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTGEMM 338
A E EA + K++ DT+VG+ RG+ SGG+K+RV +
Sbjct: 102 ------ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGE---RGLKLSGGEKQRVAIARAI 152
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398
+ L +DE ++ LD+ T +I + G I + N D II+L
Sbjct: 153 LKNPPILLLDEATSALDTHTEREIQAALRDVS---KGRTTIVIAHRLSTIVNA-DKIIVL 208
Query: 399 SDGQIVYQG-PRELVLE 414
DG+IV +G EL+ +
Sbjct: 209 KDGRIVERGTHEELLAK 225
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 69/287 (24%), Positives = 106/287 (36%), Gaps = 50/287 (17%)
Query: 132 LASKALPSFTKFFT----TIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPP 187
LP + I E L+ ++ IL D+S V PG ++GP
Sbjct: 8 SRGVELPEPKEPKKRHPIEINEPLIELKNVSVRRNGK-KILGDLSWQVNPGEHWAIVGPN 66
Query: 188 SSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM--DEFVPE--RTAAYIS--QHDNHIGEM 241
+GKTTLL L G+ PS SG VT G E + E + +S H+
Sbjct: 67 GAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRE 123
Query: 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDY 301
TVR+ + Y+ A +
Sbjct: 124 TVRDVVLSGF--FASIGIYQEDLTAEDLAAAQWL-------------------------- 155
Query: 302 YLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTF 360
L++LG AD G +S G+++RV +V P L L +DE + GLD
Sbjct: 156 -LELLGAKHLADRPFGS-----LSQGEQRRVLIARALVKDPEL-LILDEPAQGLDLIARE 208
Query: 361 QIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG 407
Q++N ++ A++ + A E F +LL +G++V QG
Sbjct: 209 QLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 65/273 (23%), Positives = 101/273 (36%), Gaps = 65/273 (23%)
Query: 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGH---NM 219
+ + DV+ ++ G +L+GP SGKTT L + ++P+ SG + +G ++
Sbjct: 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDL 68
Query: 220 DEFVPERTAAYISQHDNHIG---EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIK 276
D R Y+ Q IG +TV E +A + G
Sbjct: 69 DPVELRRKIGYVIQ---QIGLFPHLTVAENIATVPKLLGWDK------------------ 107
Query: 277 PDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE 336
E D L ++GLD + D +SGGQ++RV
Sbjct: 108 ----------------ERIKKRADELLDLVGLD---PSEYADRYPHELSGGQQQRVG--- 145
Query: 337 MMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL 391
V ALA L MDE LD T Q+ K + G ++ + E L
Sbjct: 146 --VARALAADPPILLMDEPFGALDPITRKQLQEEIK-ELQKELGKTIVFVTHDIDEALKL 202
Query: 392 FDDIILLSDGQIVYQG-PRELVL----EFFESM 419
D I ++ G+IV P E++ +F E
Sbjct: 203 ADRIAVMDAGEIVQYDTPDEILANPANDFVEDF 235
|
Length = 309 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 57/203 (28%), Positives = 90/203 (44%), Gaps = 35/203 (17%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY------P 921
K+ L VS + G + ++G SGAGK+TL+ + G + +G + + G
Sbjct: 17 KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSG 74
Query: 922 KKQETFARISGYCEQ--NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE 979
K+ R G Q N + S TV+E++ P E+ + E V+EL+E
Sbjct: 75 KELRKARRRIGMIFQHFNLLSSR--TVFENVAL------PLEIAGVPKAEIEERVLELLE 126
Query: 980 LKPLRQSLVGL-------PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
L VGL P LS Q++R+ IA L NP ++ DE TS LD
Sbjct: 127 L-------VGLEDKADAYPA--QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177
Query: 1033 IVMRTVRNT-VDTGRTVVCTIHQ 1054
++ +R+ + G T+V H+
Sbjct: 178 SILALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 64/213 (30%), Positives = 99/213 (46%), Gaps = 27/213 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS 931
L ++ G L ++G SG GKTTL++++AG Y G I + G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 932 GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP 991
G QN+ P+ V +++ + L V R ++++ V L+ + +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRT 1047
LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ + +TG+
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQETGKQ 181
Query: 1048 VVCTIHQPSIDIFEAF---DELFLMKRG-GREV 1076
V+ H DI EA EL L+ G GR V
Sbjct: 182 VLLITH----DIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 49/206 (23%), Positives = 79/206 (38%), Gaps = 43/206 (20%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARI 930
+L GV+ + G + ALMG +G+GK+TL + G G+I G
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------- 63
Query: 931 SGYCEQNDIHSPFVTVYE----SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
DI + E +F A+ PPE+ F+ V E
Sbjct: 64 ------EDITD--LPPEERARLGIFL-AFQY-PPEIPGVKNADFLRYVNE---------- 103
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
G S ++KR I L+ P + +DEP SGLD A +V + + G+
Sbjct: 104 --------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRG 1072
+V+ H + + D + ++ G
Sbjct: 156 SVLIITHYQRLLDYIKPDRVHVLYDG 181
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 2e-09
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T+L D+S ++ G + +LGP +GK+TLL LAG L PS SG + +G ++ P+
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPK 69
Query: 226 ---RTAAYISQ 233
R AY+ Q
Sbjct: 70 ELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 68/258 (26%), Positives = 100/258 (38%), Gaps = 49/258 (18%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM-DEFVPER 226
L DVS + G L LLGP SGKTTLL +AG P SG + + G + D V ER
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQER 74
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
++ QH MTV + +AF R V R E E R K +
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLR---VKPRSERPPEAEIRAKVHEL----------- 120
Query: 287 AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALF 346
LK++ LD AD +SGGQ++RV + L
Sbjct: 121 ----------------LKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLL 159
Query: 347 MDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI--- 403
+DE LD+ ++ ++ +H + + E + D +++++ G+I
Sbjct: 160 LDEPFGALDAKVRKELRRWLRR-LHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218
Query: 404 -----VYQGPR-ELVLEF 415
VY P V F
Sbjct: 219 GTPDEVYDHPASPFVYSF 236
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 63/274 (22%), Positives = 102/274 (37%), Gaps = 62/274 (22%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP- 224
L VS +K G LLGP GKTTLL +AG P+ SG + +G ++ P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPH 70
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
+R + Q+ +TV E +AF R + + E+ R A
Sbjct: 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA----------- 114
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA 344
L ++ L+ A+ ++ SGGQ++RV +V
Sbjct: 115 ------------------LDLVQLEGYANRKP-SQL----SGGQQQRVAIARALVNEPKV 151
Query: 345 LFMDEISTGLD----SSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400
L +DE LD ++ + + G + + E + D I +++
Sbjct: 152 LLLDEPLGALDLKLRKDMQLEL-----KRLQKELGITFVFVTHDQEEALTMSDRIAVMNK 206
Query: 401 GQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
G+I G P E+ E P + VADF+
Sbjct: 207 GKIQQIGTPEEIYEE---------PANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 59/225 (26%), Positives = 95/225 (42%), Gaps = 27/225 (12%)
Query: 857 QQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIR 916
M+L V E L +SG R G + L+G +GAGK+TL+ +AG +G +G I+
Sbjct: 2 ILMQLNDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQ 56
Query: 917 ISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEE 973
+G P + AR Y Q + V+ L +TR + +
Sbjct: 57 FAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH--------QPDKTRTELLND 108
Query: 974 VMELVEL-KPLRQSLVGLPGVNGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLD 1027
V + L L +S L G QR RL + + ANP+ ++ +DEP + LD
Sbjct: 109 VAGALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD 164
Query: 1028 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ + R + G +V + H + + A +L+KRG
Sbjct: 165 VAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-09
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 38/170 (22%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE 925
+ +LL +S G A++G +GAGK+TL+ +LAG G ++G +++ G K
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKV-GETVK-- 386
Query: 926 TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
GY +Q+ +T + E + + +R
Sbjct: 387 -----IGYFDQH--------------RDELD------PDKTVLEELSEGFPDGDEQEVRA 421
Query: 986 SL--VGLPG------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
L G G V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-09
Identities = 54/215 (25%), Positives = 82/215 (38%), Gaps = 55/215 (25%)
Query: 158 LPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG- 216
+ + L+ILK V +VK G ++GP SGK+TLL LAG DPS SG V G
Sbjct: 16 VGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQ 72
Query: 217 --HNMDE----FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRRE 270
H +DE + R ++ Q + I +T E +A +G + ++
Sbjct: 73 PLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG--AKAL 130
Query: 271 KAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR---RGVSGG 327
L+ +GL G + +SGG
Sbjct: 131 --------------------------------LEAVGL--------GKRLTHYPAQLSGG 150
Query: 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
+++RV G LF DE + LD +T +I
Sbjct: 151 EQQRVALARAFAGRPDVLFADEPTGNLDRATGDKI 185
|
Length = 228 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 3e-09
Identities = 55/270 (20%), Positives = 102/270 (37%), Gaps = 51/270 (18%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP- 224
T+L D+S ++ G L L+G GKTTLL A+AG + + ++GR+ ++ P
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPH 77
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
+R A + Q+ + V + +AF R +++ A I
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLR--------------AQKMPKADI--------- 114
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA 344
A + D LK++GL + +SGG ++R+ +
Sbjct: 115 ----------AERVAD-ALKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404
L +DE + LD++ + ++ + + L D ++ DG++
Sbjct: 159 LLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218
Query: 405 YQG-PRELVLEFFESMGFKCPKRKGVADFL 433
G P+ L + P A+FL
Sbjct: 219 AHGEPQAL---------YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 52/247 (21%), Positives = 95/247 (38%), Gaps = 46/247 (18%)
Query: 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF 222
HL + D++ V G + +LGP +GK+TLL +AG P SG + NG +
Sbjct: 12 GHLPMRFDLT--VPAGEIVAILGPSGAGKSTLLNLIAGFETP---ASGEILINGVDHTAS 66
Query: 223 VP-ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
P ER + + Q +N +TV + + G+ P
Sbjct: 67 PPAERPVSMLFQENNLFAHLTVAQNIGL------------------------GLSPG--- 99
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGP 341
+K + + E+ +GL + +SGGQ++RV +V
Sbjct: 100 ---LKLNAEQREKVEAA----AAQVGLAGF-----LKRLPGELSGGQRQRVALARCLVRE 147
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401
L +DE + LD + +++ Q + ++ + + + D ++ L +G
Sbjct: 148 QPILLLDEPFSALDPALRAEMLALVSQ-LCDERKMTLLMVTHHPEDAARIADRVVFLDNG 206
Query: 402 QIVYQGP 408
+I QG
Sbjct: 207 RIAAQGS 213
|
Length = 231 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 18/210 (8%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP----KKQET 926
+L+GV + R G L L+G +GAGKTTL+ + G T G + ++G +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 927 FARISGYCEQNDIHSPFV--TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
R++ + + F V E R ++ +E ME +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTGV---- 129
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
P V LS +R+R+ +A L ++ +DEPT+ LD + VR VD
Sbjct: 130 AQFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 1045 GRTVVCTIHQPSIDIFEAF-DELFLMKRGG 1073
G+T V IH +D+ + DEL L+ G
Sbjct: 189 GKTAVAAIH--DLDLAARYCDELVLLADGR 216
|
Length = 402 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 22/196 (11%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQ 924
+L G+ + G + ++G SG+GK+TL+ + G I ++++ K
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 925 ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP-EVNSETRKMFIEEVMELVELKPL 983
+ G Q P +TV E++ L P +V ++ E +EL+E
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENI------TLAPIKVKGMSKAEAEERALELLEK--- 122
Query: 984 RQSLVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
VGL LS Q++R+ IA L NP ++ DEPTS LD V+ +
Sbjct: 123 ----VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVM 178
Query: 1039 RNTVDTGRTVVCTIHQ 1054
++ + G T+V H+
Sbjct: 179 KDLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 20/194 (10%)
Query: 886 ALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS---GYCEQN---DI 939
A++G +GAGK+TL G +G + I G P +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 940 HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999
SP TV + + A+ + ++ ET + + ++ L+ LR + P + LS
Sbjct: 92 FSP--TVEQDI---AFGPINLGLDEETVAHRVSSALHMLGLEELRDRV---P--HHLSGG 141
Query: 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 1058
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL- 200
Query: 1059 IFEAFDELFLMKRG 1072
+ E D +++M +G
Sbjct: 201 VPEMADYIYVMDKG 214
|
Length = 277 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 66/224 (29%), Positives = 94/224 (41%), Gaps = 42/224 (18%)
Query: 873 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GGYITGDIRISGYPK-------- 922
VS PG + ++G SG+GK+TL+ LAGR G T +R SG
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMR-SGAELELYQLSEA 78
Query: 923 KQETFARIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFI---------- 971
++ R G+ QN + V SA N R M I
Sbjct: 79 ERRRLMRTEWGFVHQNPRDGLRMRV------SA------GANIGERLMAIGARHYGNIRA 126
Query: 972 --EEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
++ +E VE+ P R + LP S ++RL IA LV P ++FMDEPT GLD
Sbjct: 127 TAQDWLEEVEIDPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 182
Query: 1030 AAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
A ++ +R V D G V+ H + A L +M++G
Sbjct: 183 VQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 3e-09
Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 42/184 (22%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISG---YP 921
L ++ +TAL+G SG GK+TL+ D++ G + I G + G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDGQDIYD 72
Query: 922 KKQETFA---RISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMEL 977
KK + R+ G Q +PF +++Y+++ Y P ++ K ++E++E
Sbjct: 73 KKIDVVELRRRV-GMVFQKP--NPFPMSIYDNIAYG------PRLHGIKDKKELDEIVE- 122
Query: 978 VELKPLRQSLVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
+ L++ L GLS Q++RL IA L P ++ +DEPTS LD
Sbjct: 123 ---ESLKK--AALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDP 177
Query: 1029 RAAA 1032
A
Sbjct: 178 IATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 61/245 (24%), Positives = 96/245 (39%), Gaps = 51/245 (20%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T L D+S V+ G + LLGP +GKTT + + G + P SG V ++G +D
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLD-IAAR 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
Y+ + +M V + L + A+ +G L + E I
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKG----------LKKEEARRRI---------- 109
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT-TGEMMVGPALA 344
D +L+ L L A+ V +E+ S G +++V ++ P L
Sbjct: 110 --------------DEWLERLELSEYANKRV-EEL----SKGNQQKVQFIAAVIHDPEL- 149
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIH--INSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
L +DE +GLD V K I +G VI L D ++LL+ G+
Sbjct: 150 LILDEPFSGLDPVN----VELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGR 205
Query: 403 IVYQG 407
V G
Sbjct: 206 AVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 4e-09
Identities = 59/226 (26%), Positives = 95/226 (42%), Gaps = 33/226 (14%)
Query: 887 LMGVSGAGKTTLMDVLAGRKT---GGYITGDIRISGYPKKQETFARISGYCEQNDIHSPF 943
L+G SG GKTTL+ +LAG + G + ++ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 944 VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003
+TV E++ + +R +V K + E + LV+L+ + LS Q++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQR 108
Query: 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEA 1062
+ +A LV P I+ +DEP S LD + + ++ + G T V H D EA
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH----DQEEA 164
Query: 1063 F---DELFLMKRG-------GREVYVGPLGHHSCHLI---SYFEAI 1095
D + +M++G E+Y P I + FEA
Sbjct: 165 MTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINVFEAT 210
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-09
Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 30/183 (16%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK-- 923
D ++L+ VS PG A++G SG+GK+TL+ +L G +T +G + G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGL 520
Query: 924 -QETFARISGYCEQN-DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
+ R G QN + S +++E++ A L L +E E +
Sbjct: 521 DVQAVRRQLGVVLQNGRLMSG--SIFENIAGGAPLTL-------------DEAWEAARMA 565
Query: 982 PLRQSLVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
L + + +P G LS QR+RL IA LV P I+ DE TS LD R A
Sbjct: 566 GLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625
Query: 1033 IVM 1035
IV
Sbjct: 626 IVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 5e-09
Identities = 55/232 (23%), Positives = 92/232 (39%), Gaps = 40/232 (17%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG-YPKKQ 924
E++LV LN +S F + ++G SG+GK+TL+ G Y G I++ Y +
Sbjct: 36 ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDK 93
Query: 925 ETFARISGYCEQNDI------------------HSPFVTVYES--LFYSAWLRLPPEVNS 964
+ + I + F E +F L +
Sbjct: 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK 153
Query: 965 ETRKMFIEEVMEL----VELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020
+ K ++ + M L +E P GLS Q++R+ IA L P I+ D
Sbjct: 154 KLAKFYLNK-MGLDDSYLERSPF-----------GLSGGQKRRVAIAGILAIQPEILIFD 201
Query: 1021 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
EPT+GLD + +M+ + + +TV H + E DE+ +M +G
Sbjct: 202 EPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKG 252
|
Length = 320 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 6e-09
Identities = 52/249 (20%), Positives = 97/249 (38%), Gaps = 52/249 (20%)
Query: 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF 222
+HL + D++ V G + ++GP +GK+TLL +AG ++P SG + N +
Sbjct: 11 EHLPMEFDLN--VADGEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGL 65
Query: 223 VP-ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
P +R + + Q +N +TVR+ + G+ P
Sbjct: 66 APYQRPVSMLFQENNLFAHLTVRQNIGL------------------------GLHPG--- 98
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR---GVSGGQKKRVTTGEMM 338
+K + + E+ D + D + R +SGGQ++RV +
Sbjct: 99 ---LKLNAEQQEKVV------------DAAQQVGIADYLDRLPEQLSGGQRQRVALARCL 143
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398
V P L +DE + LD +++ KQ T ++ + + + I ++
Sbjct: 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVV 202
Query: 399 SDGQIVYQG 407
S G+I
Sbjct: 203 SQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 6e-09
Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 19/190 (10%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L G+S + G + ++G SG+GK+TL+ L G G IT D G K R
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
G Q P +TV E++ + P +V ++ E+ +EL+E VG
Sbjct: 78 KVGMVFQQFNLFPHLTVLENVTLA-----PVKVKKLSKAEAREKALELLEK-------VG 125
Query: 990 LPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
L LS Q++R+ IA L +P ++ DEPTS LD V+ +++ +
Sbjct: 126 LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185
Query: 1045 GRTVVCTIHQ 1054
G T++ H+
Sbjct: 186 GMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 6e-09
Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 18/188 (9%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS 931
L G+S + G TAL+G +GAGK+TL+ L G G +++ G E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 932 ---GYCEQNDIHSPFV-TVYESL-FYSAWLRL-PPEVNSETRKMFIEEVMELVELKPLRQ 985
G Q+ F TV++ + F + L EV EE ++ V + R
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV-----EEALKAVRMWDFRD 133
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
LS Q+KR+ IA L +P +I +DEP + LD R +M + + G
Sbjct: 134 K-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 1046 RTVVCTIH 1053
+TV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 6e-09
Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 13/193 (6%)
Query: 874 GVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGDIRISG---YPKKQETF 927
V+ + G + AL+G SG GKTT + + + G +TG I + G Y + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 928 A--RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
A R G Q P ++V++++ A L+L + + E + L +
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAALWDEVK 139
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--MRTVRNTVD 1043
+ P GLS Q++RL IA L P I+ MDEPTS LD + A + + T V
Sbjct: 140 DRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVT 198
Query: 1044 TGRTVVCTIHQPS 1056
T V +HQ +
Sbjct: 199 TIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 7e-09
Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 45/251 (17%)
Query: 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN---M 219
+LKD+S ++PG ++GP SGK+TL+ L DP+ SG + +G + +
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDI 396
Query: 220 DEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
+ +SQ D + T+RE +A G E+ K A
Sbjct: 397 SLDSLRKRIGIVSQ-DPLLFSGTIRENIAL-------GRPDATDEEIEEALKLANAH--- 445
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
+ L DT+VG E +SGGQ++R+ ++
Sbjct: 446 --EFIAN---------------------LPDGYDTIVG-ERGVNLSGGQRQRLAIARALL 481
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399
L +DE ++ LD+ T I + K + T +I+ T D II+L
Sbjct: 482 RNPPILILDEATSALDTETEALIQDALK-KLLKGRTTLIIAHR---LSTIKNADRIIVLD 537
Query: 400 DGQIVYQGPRE 410
+G+IV +G E
Sbjct: 538 NGRIVERGTHE 548
|
Length = 567 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (140), Expect = 8e-09
Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 20/202 (9%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGDIRISGYPKKQETFARISGYCEQ 936
+ G TAL+G +G+GK+TL+ L G + T G + GDI +S K++E +
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP------VR 83
Query: 937 NDIHSPFVTVYESLFYSAWLR---LPPE---VNSETRKMFIEEVMELVELKPLRQSLVGL 990
+ F LF L+ P+ + E + E +E+V L +
Sbjct: 84 KKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKS 141
Query: 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1050
P LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ + +G+TVV
Sbjct: 142 P--FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVL 199
Query: 1051 TIHQPSIDIFEAFDELFLMKRG 1072
H D+ + D ++L+++G
Sbjct: 200 VTHLMD-DVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 9e-09
Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 31/182 (17%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR 929
LL VS PG L+G +GAGK+TL+ +LAG +G++ R
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-------LR 67
Query: 930 ISGYCEQNDIHSPFVTVYESLF--YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
+ GY Q P TV + + + L E+ + + L EL+ L + L
Sbjct: 68 V-GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 988 ---------------VGLPG----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
+G P V+ LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 1029 RA 1030
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 59/221 (26%), Positives = 89/221 (40%), Gaps = 54/221 (24%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
L DVS ++ G L GP +GKTTLL L G L PS G+V G +++ R
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRL-RGR 72
Query: 227 TAAYISQH------DNHI-GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
+ + D + + TV E +A +G R E+ RR AA
Sbjct: 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER-----EIQRRVGAA------ 121
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
L+ +GL+ AD +SGG+++RV +V
Sbjct: 122 -----------------------LRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIV 153
Query: 340 G-PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI 379
P L L DE + LD + +I++ K+ ++ GT VI
Sbjct: 154 NSPPL-LLADEPTGNLDPDLSERILDLLKR-LNK-RGTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 44/185 (23%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISGYP--- 921
L ++ + +TAL+G SG GK+TL+ D++ G + ITGDI +G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR----ITGDILYNGENIMD 77
Query: 922 KKQETFA--RISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
+ A R G Q +PF ++YE++ Y P ++ E K ++ ++E
Sbjct: 78 SGADVVALRRKIGMVFQRP--NPFPKSIYENVAYG------PRIHGEKNKKTLDTIVE-- 127
Query: 979 ELKPLRQSLV-----------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
K L+ + + L LS Q++RL IA L NP +I MDEP S LD
Sbjct: 128 --KSLKGAALWDEVKDRLHDSAL----SLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181
Query: 1028 ARAAA 1032
A A
Sbjct: 182 PIATA 186
|
Length = 253 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 61/206 (29%), Positives = 89/206 (43%), Gaps = 26/206 (12%)
Query: 859 MKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRIS 918
M+L V L +S R G + L+G +GAGK+TL+ +AG G +G I+ +
Sbjct: 1 MQLNDVAVSTR--LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFA 55
Query: 919 GYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVM 975
G P + AR Y Q + V++ L L P + +E + EV
Sbjct: 56 GQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVA 111
Query: 976 ELVELKPLRQSLVGLPGVNGLS-TE-QRKRLTIAVEL----VANPS--IIFMDEPTSGLD 1027
E + L +G VN LS E QR RL AV L NP+ ++ +DEP + LD
Sbjct: 112 EALGL----DDKLGRS-VNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLD 165
Query: 1028 ARAAAIVMRTVRNTVDTGRTVVCTIH 1053
A + R + G VV + H
Sbjct: 166 VAQQAALDRLLSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 62/194 (31%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
+ +L+D++ V+ G +LGP GK+TLL +AG P+ SG V +G + P
Sbjct: 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGP 72
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
+ Y+ Q D + +TV + +A +G
Sbjct: 73 DI--GYVFQEDALLPWLTVLDNVALGLELRGKS--------------------------- 103
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA 344
EA L+++GL D ++ SGG ++RV A+A
Sbjct: 104 -------KAEARERAKELLELVGLAGFEDKYP-HQL----SGGMRQRV---------AIA 142
Query: 345 ---------LFMDE 349
L +DE
Sbjct: 143 RALATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 57/254 (22%), Positives = 104/254 (40%), Gaps = 49/254 (19%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
IL D+S + G++T L+GP GK+TLL A L P SG V +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSSR 72
Query: 226 RTAAYIS---QHDNHIGEMTVRETLAFAARCQGVGTRYEMLT---ELSRREKAAGIKPDP 279
+ A ++ QH +TVRE +A+ R L+ LS + A
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAYG--------RSPWLSLWGRLSAEDNAR------ 118
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
++ M+ ++ AD + D +SGGQ++R ++
Sbjct: 119 -VNQAMEQ------------------TRINHLADRRLTD-----LSGGQRQRAFLAMVLA 154
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399
+ +DE +T LD + +++ ++ G V+++L + D +++L+
Sbjct: 155 QDTPVVLLDEPTTYLDINHQVELMRLMRE--LNTQGKTVVTVLHDLNQASRYCDHLVVLA 212
Query: 400 DGQIVYQGPRELVL 413
+G ++ QG E V+
Sbjct: 213 NGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 63/271 (23%), Positives = 104/271 (38%), Gaps = 54/271 (19%)
Query: 156 HILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYN 215
H ++ + ++D+S + G + LG +GK+T L L G L P+ SG+V N
Sbjct: 28 HFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVN 84
Query: 216 GHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275
G P R + + M + L + E+L I
Sbjct: 85 G-----KDPFRRREEYLRSIGLV--MGQKLQLWW---DLPALDSLEVLKL---------I 125
Query: 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG 335
PD D F + D+ ++L L + + +R+ +S GQ+ R
Sbjct: 126 YEIPD-DEFAERL-----------DFLTEILDL----EGFLKWPVRK-LSLGQRMRAELA 168
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395
++ P LF+DE + GLD + I F + + V LL T ++FDDI
Sbjct: 169 AALLHPPKVLFLDEPTVGLDVNAQANIRE-FLKEYNEERQATV--LL-----TTHIFDDI 220
Query: 396 -------ILLSDGQIVYQGPRELVLEFFESM 419
+L+ GQ+V+ G + E F
Sbjct: 221 ATLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 57/195 (29%), Positives = 84/195 (43%), Gaps = 30/195 (15%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKT-GGYITGDIRISGYPKK 923
L G+S PG AL+G SG GK+T++ D +G G D+ + +
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQ 78
Query: 924 QETFARISGYCEQNDIHSP---FVTVYESLFYSAWLRLPPEVNSETRKMFIEE-VMELVE 979
I G Q P T+ E++ Y EV +K I + +M L
Sbjct: 79 ------I-GLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL-- 125
Query: 980 LKPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
P +LVG G LS Q++R+ IA L+ NP I+ +DE TS LDA + +V +
Sbjct: 126 --PDGYDTLVGERGSQ-LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL 182
Query: 1039 RNTVDTGRTVVCTIH 1053
+ GRT + H
Sbjct: 183 -DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 26/212 (12%)
Query: 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR--ISGYCE 935
G + A++G SGAGK+TL++++AG +T +G+I I+G A +S +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 936 QNDIHSPFVTVYES--LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGV 993
+N++ + +TV ++ L S L+L N+E R+ +E V L L LPG
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKL----NAEQREK-VEAAAAQVGLAGF---LKRLPGE 129
Query: 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRTVV 1049
LS QR+R+ +A LV I+ +DEP S LD RA M + + + + T++
Sbjct: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTLL 184
Query: 1050 CTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081
H P D D + + GR G
Sbjct: 185 MVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 63/221 (28%), Positives = 94/221 (42%), Gaps = 33/221 (14%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPK 922
P+ L VS + G A++G +G+GK+TL +L G G I + G
Sbjct: 16 PDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVL 71
Query: 923 KQETFARIS---GYCEQNDIHSP---FV--TVYESLFYSAWLRLPPEVNSETRKMFIEEV 974
+ET + G QN P FV TV + + + E R+ +E V
Sbjct: 72 SEETVWDVRRQVGMVFQN----PDNQFVGATVQDDVAFGL------ENIGVPREEMVERV 121
Query: 975 MELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1034
+ + + L P + LS Q++R+ IA L P II +DE TS LD R V
Sbjct: 122 DQALRQVGMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV 179
Query: 1035 MRTVRNTVDTGR-TVVCTIHQPSIDIFEAF--DELFLMKRG 1072
+ TVR + TV+ H D+ EA D + +M +G
Sbjct: 180 LETVRQLKEQKGITVLSITH----DLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 17/168 (10%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP-------KK 923
+L+ VS + G + A++G SG+GK+TL+ +L G T +GD+ +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
E + G+ Q P T E++ +P + + +E++ L
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENV------AMPLLIGKKKPAEINSRALEMLAAVGL 135
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1031
P + LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 136 EHRANHRP--SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 23/214 (10%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS 931
L GV+ + G +L+G SG GK+TL+++++G G + + G + R+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS--GGVILEGKQITEPGPDRMV 58
Query: 932 GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP 991
+ QN P++TV E++ A R+ P+++ R+ +EE + LV L ++ P
Sbjct: 59 VF--QNYSLLPWLTVRENI-ALAVDRVLPDLSKSERRAIVEEHIALVG---LTEAADKRP 112
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 1050
G LS ++R+ IA L P ++ +DEP LDA + + + TV+
Sbjct: 113 G--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM 170
Query: 1051 TIHQPSIDIFEAFDELFL-----MKRGGREVYVG 1079
H D+ EA L L M G +G
Sbjct: 171 VTH----DVDEA---LLLSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 37/218 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYITGDIRISGYPKK- 923
+N A G + +MG+SG+GK+T + +L AG+ +I G+ + P +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVEL 65
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
+E + G Q P +T+ ++ L + RK E+ +EL++L
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELL---GWPEQERK---EKALELLKL--- 116
Query: 984 RQSLVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
VGL + LS ++R+ +A L A P I+ MDE S LD + +
Sbjct: 117 ----VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL 172
Query: 1039 RNTVDT-GRTVVCTIHQPSIDIFEAF---DELFLMKRG 1072
+ T +T+V H D+ EA D + +MK G
Sbjct: 173 KKLQATLQKTIVFITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-08
Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 20/201 (9%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYP 921
P + L+ VS RPG A++G G+GK+TL+ +L G + T G + + I
Sbjct: 474 PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQID 533
Query: 922 KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSET--RKMFIEEVMELVE 979
R GY Q D + T+ +++ A P + E R + V E V
Sbjct: 534 P--ADLRRNIGYVPQ-DPRLFYGTLRDNIALGA-----PYADDEEILRAAELAGVTEFVR 585
Query: 980 LKPLRQSL---VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
P L +G G LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 586 RHP--DGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKD 642
Query: 1037 TVRNTVDTGRTVVCTIHQPSI 1057
++ + G+T+V H+ S+
Sbjct: 643 RLKRWL-AGKTLVLVTHRTSL 662
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 45/215 (20%)
Query: 155 LHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPSLKVSGRV 212
L + + KK L VS P +T L+GP SGK+TLL ++ L+P + ++G +
Sbjct: 11 LSVYYNKKK---ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI 67
Query: 213 TYNGHNM-----DEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELS 267
YNGHN+ D + + Q N M++ E + + R +G+
Sbjct: 68 VYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGI----------- 115
Query: 268 RREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGG 327
++K D ++ +K AS E + + D L G+SGG
Sbjct: 116 -KDKQ---VLDEAVEKSLKGASIWDEVKDRLHDSAL-------------------GLSGG 152
Query: 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
Q++RV ++ + +DE ++ LD + +I
Sbjct: 153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKI 187
|
Length = 252 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-08
Identities = 62/248 (25%), Positives = 103/248 (41%), Gaps = 49/248 (19%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
LK V+ V PG + LLG +GK+TL+ L+G +P+ G +T N N ++ +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLA 77
Query: 228 A----AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID- 282
A I Q + I E+TV E L + R LT +K G+ ID
Sbjct: 78 AQLGIGIIYQELSVIDELTVLENL-YIGR---------HLT-----KKVCGV---NIIDW 119
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
M+ A ++ L +GL + D V + +S K+ + + ++ A
Sbjct: 120 REMR------VRAAMM----LLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDA 164
Query: 343 LALFMDEISTGLDSSTT---FQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399
+ MDE ++ L + F I+N + GTA++ + E + D ++
Sbjct: 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLR-----KEGTAIVYISHKLAEIRRICDRYTVMK 219
Query: 400 DGQIVYQG 407
DG V G
Sbjct: 220 DGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 57/242 (23%), Positives = 98/242 (40%), Gaps = 51/242 (21%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
L+D++ ++ G L ++LGP GKTTLL +AG + G +T +G ++ ER
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAER 72
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
+ Q++ + V++ +AF + GV R E A +
Sbjct: 73 GVVF--QNEGLLPWRNVQDNVAFGLQLAGVEKM-------QRLEIAHQM----------- 112
Query: 287 AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR--GVSGGQKKRVTTGEMMVGPALA 344
LK +GL+ G E R +SGGQ++RV +
Sbjct: 113 ----------------LKKVGLE-------GAEKRYIWQLSGGQRQRVGIARALAANPQL 149
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS--DGQ 402
L +DE LD+ T Q+ + +G V+ + E + +++LLS G+
Sbjct: 150 LLLDEPFGALDAFTREQMQTLLLKLWQ-ETGKQVLLITHDIEEAVFMATELVLLSPGPGR 208
Query: 403 IV 404
+V
Sbjct: 209 VV 210
|
Length = 255 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 64/257 (24%), Positives = 93/257 (36%), Gaps = 56/257 (21%)
Query: 183 LLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-RTAAYISQHDNHIGEM 241
LLGP GKTTLL LAG P SG + +G ++ P R + Q M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDY 301
TV E +AF + + V E+ R A
Sbjct: 58 TVEENVAFGLKMRKVPR-----AEIKPRVLEA---------------------------- 84
Query: 302 YLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTF 360
L+++ L D +SGGQ++RV +V P + L +DE + LD
Sbjct: 85 -LRLVQL-----EEFADRKPHQLSGGQQQRVALARALVFKPKI-LLLDEPLSALDKKLRD 137
Query: 361 QIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PRELVLEFFESM 419
Q+ K I G + + E + D I ++ G+I G P E+ E
Sbjct: 138 QMQLELKT-IQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE----- 191
Query: 420 GFKCPKRKGVADFLQEV 436
P VA F+ E+
Sbjct: 192 ----PANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 3e-08
Identities = 59/222 (26%), Positives = 94/222 (42%), Gaps = 32/222 (14%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIR-ISGYPKKQ--ET 926
+N S G + +MG+SG+GK+TL+ +L T G I D + I+ + E
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 927 FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
+ Q+ P TV E++ + ++ V R+ E +ELV L+
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADK 160
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------VRN 1040
N LS ++R+ +A L +P I+ MDE S LD ++RT +
Sbjct: 161 YP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDP-----LIRTEMQDELLEL 210
Query: 1041 TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGREVYVG 1079
+T+V H D+ EA D + +MK G V VG
Sbjct: 211 QAKLKKTIVFITH----DLDEALRIGDRIAIMK-DGEIVQVG 247
|
Length = 386 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 4e-08
Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 46/223 (20%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITG-DIRISGYP 921
+LNG+S G A++G SGAGK+T++ DV +G T I G DIR
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT---IDGQDIRDV--- 330
Query: 922 KKQETFARISGYCEQ-----NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVME 976
Q++ R G Q ND T+ ++ Y P+ +E + E
Sbjct: 331 -TQQSLRRAIGIVPQDTVLFND------TIAYNIKYGR-----PDATAEE----VGAAAE 374
Query: 977 LVELKPLRQSL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
++ QSL VG G+ LS +++R+ IA ++ NP I+ +DE TS LD
Sbjct: 375 AAQIHDFIQSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTH 433
Query: 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ +R V GRT + H+ S I +A DE+ ++ G
Sbjct: 434 TEQAIQAALRE-VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 4e-08
Identities = 70/278 (25%), Positives = 113/278 (40%), Gaps = 59/278 (21%)
Query: 156 HILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS-----LKVSG 210
L ++H IL+D+S ++PGR+T LLG +GK+TLL ALAG L +V+G
Sbjct: 5 DHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTG 64
Query: 211 RVTYNGHNMDEFVPERTA---AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELS 267
VT NG + R A A + Q + AF+AR + RY
Sbjct: 65 DVTLNGEPLAAIDAPRLARLRAVLPQ--------AAQPAFAFSAREIVLLGRYP------ 110
Query: 268 RREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGG 327
+ AG D ++ +A + G A +VG ++ +SGG
Sbjct: 111 -HARRAGALTHRDGEIAWQALALAG-------------------ATALVGRDVTT-LSGG 149
Query: 328 QKKRVTTGEMM---------VGPALALFMDEISTGLDSSTTFQI---VNCFKQNIHINSG 375
+ RV ++ P L +DE + LD + ++ V ++ ++
Sbjct: 150 ELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNL--- 206
Query: 376 TAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 413
V++++ D I +L+DG IV G VL
Sbjct: 207 -GVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 5e-08
Identities = 48/217 (22%), Positives = 72/217 (33%), Gaps = 50/217 (23%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG--HNMDEF 222
+ + +S + G + GP GKTTLL LAG L P SG V +NG
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRD 69
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
P R Y+ E++ E L F A
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAA------------------------------ 99
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
A E+A L +GL D +S GQ++R+ + + A
Sbjct: 100 -IHGGAQRTIEDA-------LAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRA 146
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI 379
+DE +T LD + + + H+ G V+
Sbjct: 147 PLWILDEPTTALDKAGVALLAGLLRA--HLARGGIVL 181
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 5e-08
Identities = 58/256 (22%), Positives = 106/256 (41%), Gaps = 56/256 (21%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-- 225
L +S +++PG L+G SGK+TL+ + +P SG++ +GH++ ++
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASL 404
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
R A +SQ D + T+ +A+ Q
Sbjct: 405 RRQVALVSQ-DVVLFNDTIANNIAYGRTEQ------------------------------ 433
Query: 285 MKAASTEGEEANVITDYYLK--VLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
A E E A + Y + V L + DT +G+ +SGGQ++R+ ++ A
Sbjct: 434 --ADRAEIERA--LAAAYAQDFVDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDA 488
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI----SLLQPAPETYNLFDDIILL 398
L +DE ++ LD+ + + + + T VI S ++ A D I+++
Sbjct: 489 PILILDEATSALDNESERLVQAAL-ERLMQGRTTLVIAHRLSTIEKA-------DRIVVM 540
Query: 399 SDGQIVYQGPRELVLE 414
DG+IV +G +L
Sbjct: 541 DDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 5e-08
Identities = 68/275 (24%), Positives = 107/275 (38%), Gaps = 58/275 (21%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
++ ++ + G LLGP GKTT+L +AG P SGR+ +G ++ E
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAE 84
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
R + Q MTV E +AF R Q P +I
Sbjct: 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKT--------------------PAAEIT-- 122
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR--GVSGGQKKRVTTGEMMVGPA 342
EA L+++ L+ A R+ +SGGQ++RV +V
Sbjct: 123 -----PRVMEA-------LRMVQLEEFAQ-------RKPHQLSGGQQQRVAIARAVVNKP 163
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
L +DE + LD Q+ N K + G + + E + D I+++ DG+
Sbjct: 164 KVLLLDESLSALDYKLRKQMQNELKA-LQRKLGITFVFVTHDQEEALTMSDRIVVMRDGR 222
Query: 403 IVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
I G PRE+ ++ PK VA F+ E+
Sbjct: 223 IEQDGTPREI---------YEEPKNLFVARFIGEI 248
|
Length = 375 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 29/191 (15%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
IL+ ++ V+PG + ++GP SGK+TL LAG+ D + G V + G ++ E PE
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPE 73
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
A GE + + GV ++ + T L+ G +P +D F
Sbjct: 74 DRA----------GE-GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEP---LDRF- 118
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV-GPALA 344
+ +++ + K+ L + D ++ + G SGG+KKR +M V P L
Sbjct: 119 -------DFQDLMEE---KIALLKMPED-LLTRSVNVGFSGGEKKRNDILQMAVLEPELC 167
Query: 345 LFMDEISTGLD 355
+ +DE +GLD
Sbjct: 168 I-LDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 6e-08
Identities = 44/203 (21%), Positives = 70/203 (34%), Gaps = 48/203 (23%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE----- 221
+LK ++ + G + LLG +GK+TLLL L G L P SG V +G +D
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGL 63
Query: 222 FVPERTAAYISQH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ + Q D+ + V + +AF G+
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGL------------------------ 99
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
E L +G + +SGG+KKRV +
Sbjct: 100 ----------SEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAM 144
Query: 341 PALALFMDEISTGLDSSTTFQIV 363
L +DE + GLD + Q++
Sbjct: 145 RPDVLLLDEPTAGLDPAGREQML 167
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 6e-08
Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 30/223 (13%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGDIRISGYPKKQ- 924
V +N VS R G + +MG+SG+GK+TL+ + T G I G I+ +K+
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQ-DIAAMSRKEL 96
Query: 925 -ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
E + Q+ P TV E++ + ++ V R+ E +ELV L+
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGW 153
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIVMRTVR 1039
+ LS ++R+ +A L +P I+ MDE S LD ++R
Sbjct: 154 EHKYP-----DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208
Query: 1040 NTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGREVYVG 1079
+T+V H D+ EA D + +MK GR V VG
Sbjct: 209 E---LQKTIVFITH----DLDEALRLGDRIAIMK-DGRLVQVG 243
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 60/257 (23%), Positives = 111/257 (43%), Gaps = 54/257 (21%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+L DVS + G +T ++GP +GK+T LL++ +L K SG +T +G + +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKST-LLSMMSRLLK--KDSGEITIDGLELTSTPSK 71
Query: 226 RTAAYIS--QHDNHIG-EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
A +S + +NHI +TVR+ + F R+ P
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGFG--------RF----------------P----- 102
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
+ + T +E I + ++ L L+ +D + DE+ SGGQ++R +
Sbjct: 103 -YSQGRLT--KEDRRIINEAIEYLHLEDLSDRYL-DEL----SGGQRQRA-----FIAMV 149
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397
LA + +DE LD + QI+ ++ G ++ +L D I+
Sbjct: 150 LAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLAD-ELGKTIVVVLHDINFASCYSDHIVA 208
Query: 398 LSDGQIVYQGPRELVLE 414
L +G++V QG + +++
Sbjct: 209 LKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 7e-08
Identities = 41/193 (21%), Positives = 70/193 (36%), Gaps = 43/193 (22%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-- 224
+L +V+ + G + L+GP GK+TLL + G L +G + N +D +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAA 75
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
+R + Q ++V + L FA
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFAL--------------------------------- 102
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA 344
A+ +G + L+ GLD + +SGGQ+ RV ++ A
Sbjct: 103 --PATLKGNARRNAANAALERSGLDGAF-----HQDPATLSGGQRARVALLRALLAQPKA 155
Query: 345 LFMDEISTGLDSS 357
L +DE + LD +
Sbjct: 156 LLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 7e-08
Identities = 62/257 (24%), Positives = 102/257 (39%), Gaps = 55/257 (21%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM---DEF 222
LK+ + + G +LG SGK+TLL LAG DP G +T NG + DE
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQ 408
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
T + ++Q H+ T+R+ L A PD D
Sbjct: 409 ALRETISVLTQ-RVHLFSGTLRDNLRLA-------------------------NPDAS-D 441
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
+ AA + ++ +T +G E R +SGG+++R+ ++ A
Sbjct: 442 EELWAALQQVGLEKLLES-------APDGLNTWLG-EGGRRLSGGERRRLALARALLHDA 493
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL-----FDDIIL 397
+DE + GLD T Q++ + H T ++ T+ L D II+
Sbjct: 494 PLWLLDEPTEGLDPITERQVLALLFE--HAEGKTLLMV-------THRLRGLERMDRIIV 544
Query: 398 LSDGQIVYQGPRELVLE 414
L +G+I+ +G +L
Sbjct: 545 LDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 8e-08
Identities = 58/258 (22%), Positives = 95/258 (36%), Gaps = 69/258 (26%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM----DE-- 221
+ V+ V+ G + LGP +GKTT + L L P+ SG G+++ +
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVR 65
Query: 222 ----FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP 277
VP+ + ++T RE L R G L + E+A +
Sbjct: 66 RSIGIVPQYASVDE--------DLTGRENLEMMGRLYG-------LPKDEAEERAEEL-- 108
Query: 278 DPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM 337
L++ L AD VG SGG ++R+
Sbjct: 109 -------------------------LELFELGEAADRPVG-----TYSGGMRRRLDIAAS 138
Query: 338 MVGPALALFMDEISTGLDSST---TFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394
++ LF+DE +TGLD T + + K+ G ++ E L D
Sbjct: 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-----EGVTILLTTHYMEEADKLCDR 193
Query: 395 IILLSDGQIVYQG-PREL 411
I ++ G+I+ +G P EL
Sbjct: 194 IAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 8e-08
Identities = 55/217 (25%), Positives = 87/217 (40%), Gaps = 63/217 (29%)
Query: 162 KKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLL--LALAGKLDPSLKVSGRVTYNGHN- 218
KH LKD++ + ++T L+GP GK+TLL L L P +V G V +G N
Sbjct: 19 DKH--ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI 76
Query: 219 ----MDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRR-EKAA 273
+D R + Q N M++ + +A+ R G+ + EL E +
Sbjct: 77 YDPKVDVVELRRRVGMVFQKPNPF-PMSIYDNVAYGLRLHGIKDK-----ELDEIVESS- 129
Query: 274 GIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR---GVSGGQKK 330
+K A+ E V D + + G+SGGQ++
Sbjct: 130 -----------LKKAALWDE----------------------VKDRLHKSALGLSGGQQQ 156
Query: 331 RVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQI 362
R+ + ALA L MDE ++ LD +T +I
Sbjct: 157 RLC-----IARALAVKPEVLLMDEPTSALDPISTLKI 188
|
Length = 253 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 9e-08
Identities = 51/257 (19%), Positives = 104/257 (40%), Gaps = 57/257 (22%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG---HNMDEFV 223
+LKD++ +KPG ++GP +GKTTL+ L DP G++ +G ++
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKS 74
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
+ Q D + T+ E + +P+ +
Sbjct: 75 LRSMIGVVLQ-DTFLFSGTIMENIRLG-------------------------RPNATDEE 108
Query: 284 FMKAASTEGEEANVITDYYLKVL--GLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGP 341
++AA G ++ L G DT++G E +S G+++ + M+
Sbjct: 109 VIEAAKEAG------AHDFIMKLPNGY----DTVLG-ENGGNLSQGERQLLAIARAMLRD 157
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI----SLLQPAPETYNLFDDIIL 397
L +DE ++ +D+ T +++ + + + +I S ++ A D I++
Sbjct: 158 PKILILDEATSNIDTETE-KLIQEALEKLMKGRTSIIIAHRLSTIKNA-------DKILV 209
Query: 398 LSDGQIVYQGPRELVLE 414
L DG+I+ +G + +L
Sbjct: 210 LDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 9e-08
Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 32/213 (15%)
Query: 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR--ISGYCE 935
F G +TA++G SG+GK+TL++++AG +T +G + I+G A +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 936 QNDIHSPFVTVYES--LFYSAWLRLPPE----VNSETRKMFIEEVMELVELKPLRQSLVG 989
+N++ +TV ++ L S L+L E + ++ + + R
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-------KR----- 124
Query: 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGR 1046
LPG LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T
Sbjct: 125 LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKM 180
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
TV+ HQP D + + GR G
Sbjct: 181 TVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 9e-08
Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 25/223 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI---TGDIRISGYPKKQET 926
++ VS + G + ++G SGAGKTTL ++AG T G + GD + +
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359
Query: 927 FARISGYC----EQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
R Y ++ D++ P TV ++L + L LP E+ K I M + +
Sbjct: 360 RGRAKRYIGILHQEYDLY-PHRTVLDNLTEAIGLELPDEL--ARMKAVITLKMVGFDEEK 416
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1042
+ L P + LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 417 AEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSI 470
Query: 1043 -----DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
+ +T + H + + D LM R G+ V +G
Sbjct: 471 LKAREEMEQTFIIVSHDMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 9e-08
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 31/201 (15%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQ 924
D LVL VS PG +TAL+G SG+GK+T++ +L + GG + D G P
Sbjct: 26 DTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLD----GKP--- 77
Query: 925 ETFARISGYCEQNDIHSPFVTV-YESLFYSAWLRLPPEVNSETRKMFIEEVMELV----- 978
IS Y E +HS V E + ++ L+ ++ E V E
Sbjct: 78 -----ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF--ECVKEAAQKAHA 129
Query: 979 -----ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1033
EL + VG G + LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 130 HSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 1034 VMRTVRNTVDTGRTVVCTIHQ 1054
V + + + RTV+ H+
Sbjct: 189 VQQALYDW-PERRTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN---M 219
T+L DVS ++ G + LLGP SGK+TLL +AG +P SG + +G + +
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDL 67
Query: 220 DEFVP--ERTAAYISQHDNHIGEMTVRETLAFA 250
++ +P R + Q +TV E +A
Sbjct: 68 EDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 1e-07
Identities = 46/216 (21%), Positives = 90/216 (41%), Gaps = 46/216 (21%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFA 928
L ++ G L A++G G+GK++L+ L G K G ++ I+
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA---------- 69
Query: 929 RISGYCEQNDIHSPFV---TVYES-LFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-L 983
Y Q P++ T+ E+ LF + E+V++ L+P L
Sbjct: 70 ----YVSQ----EPWIQNGTIRENILF-----------GKPFDEERYEKVIKACALEPDL 110
Query: 984 R------QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVMR 1036
+ +G G+N LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 111 EILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEN 169
Query: 1037 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ + +T + HQ + + D++ ++ G
Sbjct: 170 CILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 864 VPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY------ITGDIRI 917
V +L +S PG +TAL+G +GAGK+TL+ LAG TGG +TGD+ +
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68
Query: 918 SGYP 921
+G P
Sbjct: 69 NGEP 72
|
Length = 272 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 1e-07
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 40/185 (21%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISG---YP 921
L G+S + A +G SG GK+T + D++ + + G+IRI G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 922 KKQET--FARISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
K + + G Q +PF +++E++ Y LR VN FI + +E
Sbjct: 75 KGVQVDELRKNVGMVFQRP--NPFPKSIFENVAYG--LR----VNGVKDNAFIRQRVEET 126
Query: 979 --------ELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
E+K L++S L G Q++RL IA + +PS++ MDEP S LD
Sbjct: 127 LKGAALWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPI 180
Query: 1030 AAAIV 1034
+ A V
Sbjct: 181 STAKV 185
|
Length = 250 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-07
Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 29/183 (15%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS 931
L+ VS R G + +L G +GAGK+TLM VL+G G G+I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 932 GYCEQND---IHS-----PFVTVYESLFYSA-WLRLP----PEVNSETRKMFIEEVMELV 978
E+ IH ++V E++F + +K+
Sbjct: 78 D-TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKL--------- 127
Query: 979 ELKPLRQSL-VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1037
L L+ + P V L Q++ + IA L ++ +DEPT+ L A+++
Sbjct: 128 -LAQLKLDINPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185
Query: 1038 VRN 1040
+R+
Sbjct: 186 IRD 188
|
Length = 506 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 1e-07
Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 19/187 (10%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARI 930
LL +S G L L G +GAGKTTL+ ++AG G+I K++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 931 SGYC---EQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
C ++ I +P++T+ E+ Y +++ + I E+ L L+ L
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 1048 VVCTIHQ 1054
V+ T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 69/270 (25%), Positives = 117/270 (43%), Gaps = 49/270 (18%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKV-SGRVTYNGHNMDEFVPE 225
ILK ++ + G + ++GP SGK+TL +AG P+ K+ G + + G ++ + PE
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH--PAYKILEGDILFKGESILDLEPE 79
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELS--RREKAAGIKPDPDIDV 283
A H+G LAF + G L+ + K G P+ D
Sbjct: 80 ERA--------HLGIF-----LAFQYPIEIPGVSNADFLRLAYNSKRKFQG-LPELDPLE 125
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM-MVGPA 342
F++ +I + LK++G+D + + + G SGG+KKR +M ++
Sbjct: 126 FLE----------IINE-KLKLVGMD---PSFLSRNVNEGFSGGEKKRNEILQMALLDSE 171
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETY-NLFDDII----- 396
LA+ +DE +GLD I N + S ++I + Y L D I
Sbjct: 172 LAI-LDETDSGLDIDALKIIAEGI--NKLMTSENSIILITH-----YQRLLDYIKPDYVH 223
Query: 397 LLSDGQIVYQGPRELVLEFFESMGFKCPKR 426
++ +G+I+ G EL E E G+ K+
Sbjct: 224 VMQNGKIIKTGDAELAKE-LEKKGYDWLKQ 252
|
Length = 252 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 33/242 (13%)
Query: 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 902
++ FD V Y+ +G P + ++ V+ F G A++G +G+GK+TL+ +
Sbjct: 2 TIRFDNVSYTYQ-------KGTPYEH-QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNI 53
Query: 903 AG--RKTGGYIT-GDIRISGYPKKQETFARISGYCEQNDIHSPFVTVY---ESLFYSAWL 956
+ T G +T DI I+ K ++ + R + V+ ES + +
Sbjct: 54 NALLKPTTGTVTVDDITITH--KTKDKYIR--------PVRKRIGMVFQFPESQLFEDTV 103
Query: 957 RLPPEVNSETRKMFIEEVME-----LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELV 1011
+ KM ++EV L++L R + P +S Q +++ I L
Sbjct: 104 EREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--FQMSGGQMRKIAIVSILA 161
Query: 1012 ANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070
NP II +DEPT+GLD ++ VMR +++ D +T++ H + ++ DE+ +MK
Sbjct: 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMK 220
Query: 1071 RG 1072
G
Sbjct: 221 EG 222
|
Length = 286 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 45/188 (23%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISG---YP 921
L V +TA +G SG GK+T + D + G + +TG I + G Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDIYD 90
Query: 922 KKQ---ETFARISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETR-KMFIEEVME 976
+ E AR+ G Q +PF ++YE++ Y P ++ R K ++E++E
Sbjct: 91 PRLDVVELRARV-GMVFQKP--NPFPKSIYENVAYG------PRIHGLARSKAELDEIVE 141
Query: 977 LVELKPLRQSLVGL----------PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026
LR++ GL PG GLS Q++RL IA + +P +I MDEP S L
Sbjct: 142 ----TSLRKA--GLWEEVKDRLHEPG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCSAL 194
Query: 1027 DARAAAIV 1034
D A A V
Sbjct: 195 DPIATAKV 202
|
Length = 267 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-07
Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 12/187 (6%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ----ETF 927
L+G++ RPG AL+G SGAGK+TL +L + +G I + G +Q E
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQLDPAELR 413
Query: 928 ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
AR++ + + + +V E++ Y EV + R E + L +
Sbjct: 414 ARMALVPQDPVLFA--ASVMENIRYGRPDATDEEVEAAARAAHAHEFIS--ALPEGYDTY 469
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
+G GV LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + T+ GRT
Sbjct: 470 LGERGV-TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMKGRT 527
Query: 1048 VVCTIHQ 1054
+ H+
Sbjct: 528 TLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 2e-07
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 16/177 (9%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGDIRISG---YPKKQ 924
L+G+S F LTAL+G SG GK+T + L R ITG+I+ G Y K
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 925 ETFA--RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL-K 981
+ + G Q PF +VY+++ Y L++ + E +EE ++ + K
Sbjct: 79 DLVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAIWK 135
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
+ +L S Q++R+ IA L P ++ +DEPTS LD +++ + T+
Sbjct: 136 ETKDNLD--RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETL 190
|
Length = 251 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 60/188 (31%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISGYPKKQ 924
L ++ +TAL+G SG GK+T + D++ K I G++ + G Q
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----Q 70
Query: 925 ETFARISGYCEQNDIHS-------------PF-VTVYESLFYSAWLRLPPEVNSETRKMF 970
+ Y D++ PF +++Y+++ Y P + K
Sbjct: 71 DI------YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG------PRTHGIKDKKK 118
Query: 971 IEEVMELVELKPLRQSLV-----------GLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1019
++E++E K L+ + + L GLS Q++RL IA L P ++ M
Sbjct: 119 LDEIVE----KSLKGAALWDEVKDRLKKSAL----GLSGGQQQRLCIARALAVEPEVLLM 170
Query: 1020 DEPTSGLD 1027
DEPTS LD
Sbjct: 171 DEPTSALD 178
|
Length = 250 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-07
Identities = 67/258 (25%), Positives = 109/258 (42%), Gaps = 46/258 (17%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
IL D+S +K T ++G SGK+TL L G SG + NG ++ + +R
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDI--DR 543
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
+ Q N++ + E F+ G+ E L G K + D
Sbjct: 544 HT--LRQFINYLPQ----EPYIFS------GSILENLL--------LGAKENVSQDEIWA 583
Query: 287 AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALF 346
A A + D LG T + +E +SGGQK+R+ ++ + L
Sbjct: 584 ACEI----AEIKDDIENMPLGYQ----TELSEE-GSSISGGQKQRIALARALLTDSKVLI 634
Query: 347 MDEISTGLDSSTTFQIVNCFKQNIHINSGTA--VISLLQPAPETYNLFDDIILLSDGQIV 404
+DE ++ LD+ T +IVN +++ T V L A ++ D II+L G+I+
Sbjct: 635 LDESTSNLDTITEKKIVNNL---LNLQDKTIIFVAHRLSVAKQS----DKIIVLDHGKII 687
Query: 405 YQGP-RELVLE--FFESM 419
QG EL+ F+ S+
Sbjct: 688 EQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 62/264 (23%), Positives = 112/264 (42%), Gaps = 45/264 (17%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T+ ++++ + G T ++GP GK+TLL L+ + P G V +G ++ + +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASK 77
Query: 226 RTAAYI---SQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
A I +Q+ G++TV+E +A RY +R K D +
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVARG--------RYPHQPLFTRWRKE-------DEE 122
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
KA G IT + + DT+ SGGQ++R ++
Sbjct: 123 AVTKAMQATG-----ITHLADQSV------DTL---------SGGQRQRAWIAMVLAQET 162
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
+ +DE +T LD S ++ + ++ G + ++L + +I L +G+
Sbjct: 163 AIMLLDEPTTWLDISHQIDLLELLSE-LNREKGYTLAAVLHDLNQACRYASHLIALREGK 221
Query: 403 IVYQG-PRELVL-EFFESM-GFKC 423
IV QG P+E+V E E + G +C
Sbjct: 222 IVAQGAPKEIVTAELIERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 40/192 (20%)
Query: 858 QMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GD 914
M+ G L+ +N V+ R + +L+G +GAGKTT+ + L G + TGG I
Sbjct: 12 MMRFGG-----LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRG 66
Query: 915 IRISGYPKKQ-------ETFARISGYCEQNDIHSPFVTVYESL-----------FYSAWL 956
I G P Q TF + + E +TV E+L +S L
Sbjct: 67 QHIEGLPGHQIARMGVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLL 118
Query: 957 RLPPEVNSETRKM-FIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPS 1015
+ P +E+ + +E V L G L+ Q++RL IA +V P
Sbjct: 119 KTPAFRRAESEALDRAATWLERVGLLEHANRQAG-----NLAYGQQRRLEIARCMVTQPE 173
Query: 1016 IIFMDEPTSGLD 1027
I+ +DEP +GL+
Sbjct: 174 ILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 69/280 (24%), Positives = 109/280 (38%), Gaps = 70/280 (25%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-- 225
+ +++ + G +L+GP SGKTT + + ++P+ SG + +G ++ E P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVEL 73
Query: 226 -RTAAYISQHDNHIG---EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
R Y+ Q IG MTV E +A + + RE+A
Sbjct: 74 RRKIGYVIQ---QIGLFPHMTVEENIALVPKLLKWP-------KEKIRERA--------- 114
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGP 341
D L ++GLD D +SGGQ++RV V
Sbjct: 115 ------------------DELLALVGLD---PAEFADRYPHELSGGQQQRVG-----VAR 148
Query: 342 ALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396
ALA L MDE LD T Q+ FK + G ++ + E + L D I
Sbjct: 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFK-RLQQELGKTIVFVTHDIDEAFRLADRIA 207
Query: 397 LLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQE 435
++ +G+IV G P E+ + P VA+F+
Sbjct: 208 IMKNGEIVQVGTPDEI---------LRSPANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 3e-07
Identities = 67/278 (24%), Positives = 110/278 (39%), Gaps = 57/278 (20%)
Query: 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN----M 219
+LK +S V+ G + +++GP SGK+TLL L G +P SG +T +G +
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKK 70
Query: 220 DEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
D R + Q N +TV E + A K +
Sbjct: 71 DILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV------------------KVKKLSK-- 110
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE-MM 338
EA L+ +GL AD D +SGGQ++RV +
Sbjct: 111 -------------AEAREKALELLEKVGL---ADKA--DAYPAQLSGGQQQRVAIARALA 152
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398
+ P + LF DE ++ LD ++++ K G +I + + D +I +
Sbjct: 153 MDPKVMLF-DEPTSALDPELVGEVLDVMKDL--AEEGMTMIIVTHEMGFAREVADRVIFM 209
Query: 399 SDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
G+I+ +GP E EFF++ PK + FL ++
Sbjct: 210 DQGKIIEEGPPE---EFFDN-----PKSERTRQFLSKI 239
|
Length = 240 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 50/159 (31%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 884 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISG---YPKKQETFARIS-G 932
+TAL+G SG GK+TL+ D++ G K ITG + + G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 933 YCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP 991
Q +PF +++YE++ Y LR + + +E + L + +
Sbjct: 87 MVFQKP--NPFPMSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSH 142
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 143 AF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 11/210 (5%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK----QETF 927
L+G+ RPG L G +GAGK+TLM +L+G G G+I SG P K ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 928 ARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQS 986
Q P ++V E++F + LP + + + ++ ++L +
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
V Q++ + IA L ++ +DEP+S L + I++ +R+
Sbjct: 137 R----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL--KAH 190
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076
V C ++ +A + + R G+ V
Sbjct: 191 GVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 4e-07
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+ ++S V PG + LLGP +GKTT + G L+P+ G +T+NG + + +
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIK 276
R Y+ + +MTV + L + A +G+ E+ +L + I
Sbjct: 73 RI-GYLPEERGLYPKMTVEDQLKYLAELKGMPKA-EIQKKLQAWLERLEIV 121
|
Length = 300 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 4e-07
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 20/181 (11%)
Query: 882 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGDIRISGYPKKQETFARISGYCEQND 938
G + A+MG SGAGK+TL++++AG G D +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 939 IHSPFVTVYESLFYSAWLRLPP--EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996
+TV +++ L L P ++N+E ++ + + + V + L LP L
Sbjct: 82 F--AHLTVRQNI----GLGLHPGLKLNAEQQEK-VVDAAQQVGIADY---LDRLP--EQL 129
Query: 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQP 1055
S QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H
Sbjct: 130 SGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189
Query: 1056 S 1056
S
Sbjct: 190 S 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 44/254 (17%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPSLKVSGRVTYNGHNM-----D 220
+K+V+ V+ G + L+GP GKTT L A+ L P +V+GR+ +G ++ D
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
R + Q N M+V + + + G+ R ++ R + A + +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALW--DE 137
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
+ +K +T G+SGGQ++R+ +
Sbjct: 138 VKDRLKTPAT--------------------------------GLSGGQQQRLCIARALAV 165
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400
L MDE ++ LD ++T +I + + T +I + + + D
Sbjct: 166 EPEILLMDEPTSALDPASTARIEDLMTD---LKKVTTIIIVTHNMHQAARVSDTTSFFLV 222
Query: 401 GQIVYQGPRELVLE 414
G +V GP + +
Sbjct: 223 GDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP------KKQ 924
+L VS + G L+G SG GK+TL +L G + G + G K++
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDRKQR 83
Query: 925 ETFARISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
F R Q+ + P +TV + + LR ++ +K I E++++V L+
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
+ LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 142 --EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 4e-07
Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 20/166 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYP------KK 923
LN VS + + G AL+G SG GK+TL +L G + G++ G P +
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ----GNVSWRGEPLAKLNRAQ 83
Query: 924 QETFARISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
++ F R Q+ I + P TV E + LR ++ R E++ V+L
Sbjct: 84 RKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 142 D--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 4e-07
Identities = 55/222 (24%), Positives = 108/222 (48%), Gaps = 36/222 (16%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGDIRISGYPK 922
P+ K L ++ G AL+G SGAGKT+L++ L G++ G ++I+G
Sbjct: 360 PDGK-TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALL-----GFLPYQGSLKINGIEL 413
Query: 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE 979
++ E++ + + QN P T+ +++ P+ + E ++ + +E
Sbjct: 414 RELDPESWRKHLSWVGQNP-QLPHGTLRDNVLLGN-----PDASDE-------QLQQALE 460
Query: 980 LKPLRQSLVGLP-GVN--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
+ + L LP G++ GLS Q +RL +A L+ ++ +DEPT+ LDA +
Sbjct: 461 NAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520
Query: 1031 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+VM+ + N +T + HQ ++ +D++++M+ G
Sbjct: 521 EQLVMQAL-NAASRRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 65/264 (24%), Positives = 111/264 (42%), Gaps = 70/264 (26%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
LK ++ +K G +T +LG +GK+TL L G L PS SGR+ ++G +D
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPID------- 71
Query: 228 AAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKA 287
Y + G M +RE+ VG ++ DPD +F
Sbjct: 72 --YSRK-----GLMKLRES---------VGMVFQ----------------DPDNQLF--- 96
Query: 288 ASTEGEEANVITDYYLKVLGLDICADTM---VGDEMRR-GV-----------SGGQKKRV 332
A+V D + L + D + V + ++R G+ S GQKKRV
Sbjct: 97 ------SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 150
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLF 392
++V L +DE + GLD +I+ + T +I+ + L+
Sbjct: 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD--IDIVPLY 208
Query: 393 -DDIILLSDGQIVYQG-PRELVLE 414
D++ ++ +G+++ QG P+E+ E
Sbjct: 209 CDNVFVMKEGRVILQGNPKEVFAE 232
|
Length = 283 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 5e-07
Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 36/197 (18%)
Query: 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGDIRISGYPKKQETFARISGYCEQN 937
G L L+G +GAGKTTL+ R G I G ++++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 938 DIHS-----PFVTVYESLFYS-----AWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
H P ++V ++ WLR P + + + + V L L
Sbjct: 58 --HEFAWDFP-ISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRP 110
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
VG LS QR+R+ +A L PS++ +DEP +GLD ++ G
Sbjct: 111 VG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 1048 VVCTIHQPSIDIFEAFD 1064
++ T H D+ +A
Sbjct: 166 ILMTTH----DLAQAMA 178
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 5e-07
Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 22/169 (13%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGDIRISG---YPKKQE 925
L G+ F +TAL+G SG GK+T + L G ITG++ + G Y ++
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 926 T--FARISGYCEQNDIHSPFVTVYESLFYSAWLRLP----PEVNSETRKMFIEEVMELVE 979
+ G Q PF ++YE++ Y LRL V E + +++ E
Sbjct: 81 VVQLRKQVGMVFQQPNPFPF-SIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAAIWDE 137
Query: 980 LK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
+K L +S + L G Q++R+ IA L P +I +DEPTS LD
Sbjct: 138 VKDHLHESALSLSG------GQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 5e-07
Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 46/187 (24%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARI 930
+L+GV+ +TALMG SG+GK+TL+ V + I YP+ AR+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 931 SG--YCEQNDIHS--------------------PFVTVYESLFYSAWLRLPPEVNSETRK 968
SG Y + DI P ++++E++ + L+L V S +K
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENV--ALGLKLNRLVKS--KK 117
Query: 969 MFIEEVMELVELKPLRQSL---VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025
E V +E L + + P LS Q++RL IA L P ++ DEPT+
Sbjct: 118 ELQERVRWALEKAQLWDEVKDRLDAPA-GKLSGGQQQRLCIARALAFQPEVLLADEPTAN 176
Query: 1026 LDARAAA 1032
LD A
Sbjct: 177 LDPENTA 183
|
Length = 250 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 5e-07
Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 64/219 (29%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS 931
L + + VL + GVSG+GK+TL+ G Y +G R+ + K
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPK-------- 56
Query: 932 GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK----PLRQSL 987
S + +FI+++ L+++ L Q L
Sbjct: 57 -------------------------------FSRNKLIFIDQLQFLIDVGLGYLTLGQKL 85
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
+ LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 1046 RTVVCTIHQPSIDIFEAFDELFLM-----KRGGREVYVG 1079
TV+ H D+ + D + K GG+ V+ G
Sbjct: 140 NTVILIEHNL--DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 6e-07
Identities = 54/196 (27%), Positives = 76/196 (38%), Gaps = 52/196 (26%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
++ +S V+ G LLGP +GKTT L L G P +G ++ G E VP
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCG----EPVPS 73
Query: 226 RT------AAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
R + Q DN + TVRE L V RY L+ + R +
Sbjct: 74 RARHARQRVGVVPQFDNLDPDFTVRENLL-------VFGRYFGLSAAAARALVPPL---- 122
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
L+ L+ AD VG+ +SGG K+R+T +V
Sbjct: 123 -----------------------LEFAKLENKADAKVGE-----LSGGMKRRLTLARALV 154
Query: 340 GPALALFMDEISTGLD 355
L +DE +TGLD
Sbjct: 155 NDPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 6e-07
Identities = 57/220 (25%), Positives = 94/220 (42%), Gaps = 29/220 (13%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924
P L+ +S PG AL+G SG+GK+TL++++ + +G I + G+
Sbjct: 341 PGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLAD 398
Query: 925 ETFARISGYCEQ--NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEV------ME 976
T A + D+ T+ ++ Y + + IE +
Sbjct: 399 YTLASLRRQVALVSQDVVLFNDTIANNIAYGR----TEQADRAE----IERALAAAYAQD 450
Query: 977 LVELKPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
V+ PL + +G GV LS QR+RL IA L+ + I+ +DE TS LD +
Sbjct: 451 FVDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESE---- 505
Query: 1036 RTVRNTVD---TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
R V+ ++ GRT + H+ S E D + +M G
Sbjct: 506 RLVQAALERLMQGRTTLVIAHRLS--TIEKADRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 53/181 (29%), Positives = 78/181 (43%), Gaps = 36/181 (19%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGD-IRISGYPKK 923
L+ +S F +TAL+G SG GK+T + D++ G + G I D I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 924 QETFARISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
R G Q +PF +++E++ Y LR VN K ++ E +E +
Sbjct: 82 VVELRRRVGMVFQKP--NPFPKSIFENVAYG--LR----VNGVKDKAYLAERVE----RS 129
Query: 983 LRQSLV-----------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1031
LR + + L GLS Q++RL IA L P ++ MDEP S LD A
Sbjct: 130 LRHAALWDEVKDRLHESAL----GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIAT 185
Query: 1032 A 1032
Sbjct: 186 Q 186
|
Length = 253 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 7e-07
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
IL+ VS V G +T +LG GKTTLL L G L SG + +G ++ + P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70
Query: 226 RTA----AYISQHDNHIGEMTVRETL 247
A AY+ Q +TV E L
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENL 96
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 7e-07
Identities = 68/279 (24%), Positives = 105/279 (37%), Gaps = 78/279 (27%)
Query: 157 ILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG 216
+ T +T LKDVS V G + ++G +GK+TL+ + G P+ SG V +G
Sbjct: 10 VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDG 66
Query: 217 HNMDEFVP------ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGT--RYEMLTELSR 268
++ R I QH N + TV E +A GV E + EL
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLEL-- 124
Query: 269 REKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328
L+++GL+ AD +SGGQ
Sbjct: 125 ----------------------------------LELVGLEDKADAYPAQ-----LSGGQ 145
Query: 329 KKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQ 383
K+RV + ALA L DE ++ LD TT I+ + IN + +L
Sbjct: 146 KQRVG-----IARALANNPKVLLCDEATSALDPETTQSILALLRD---INRELGLTIVLI 197
Query: 384 PAPETY------NLFDDIILLSDGQIVYQGPRELVLEFF 416
T+ + D + ++ G++V +G V E F
Sbjct: 198 ----THEMEVVKRICDRVAVMEKGEVVEEGT---VEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (125), Expect = 7e-07
Identities = 68/276 (24%), Positives = 110/276 (39%), Gaps = 48/276 (17%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS---LKVSGRVTYNGHNMDEFVP 224
L D+ VK G T L+G SGK+TLL L G L P+ + V V + E P
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 225 ERTAAYISQH--DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
R + ++ + E TV + +AF + G+
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPK------------------------ 117
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
E+A I L+++GL ++ +SGGQ +RV ++
Sbjct: 118 ----------EKAEKIAAEKLEMVGLA----DEFWEKSPFELSGGQMRRVAIAGILAMEP 163
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
L +DE + GLD +++ F ++IH SG V+ + + + D + LL G
Sbjct: 164 EVLVLDEPTAGLDPKARIEMMQLF-ESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGH 221
Query: 403 IVYQG-PRELVLE--FFESMGFKCPKRKGVADFLQE 435
I+ G P ++ E F ++ PK AD LQ+
Sbjct: 222 IISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 7e-07
Identities = 53/204 (25%), Positives = 85/204 (41%), Gaps = 36/204 (17%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYIT-GDIRISGY 920
P VL +S + +PG ++G +G+GK++L+ L R + G I + IS
Sbjct: 14 PNLPPVL-KNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKI 71
Query: 921 PKKQ--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRL---PPEVNSETRKMFIEEVM 975
+ I Q+ P LF S +R P S+ + + +
Sbjct: 72 GLHDLRSRISIIP----QD----PV------LF-SGTIRSNLDPFGEYSDEE---LWQAL 113
Query: 976 ELVELKPLRQSLV-GLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
E V LK +SL GL V LS QR+ L +A L+ I+ +DE T+ +D
Sbjct: 114 ERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPE 173
Query: 1030 AAAIVMRTVRNTVDTGRTVVCTIH 1053
A++ +T+R TV+ H
Sbjct: 174 TDALIQKTIR-EAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 8e-07
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 325 SGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQ 383
SGGQ++RV ++ P L L +DE ++GLD ++ +++ ++ G VI +
Sbjct: 82 SGGQRQRVALARALLLNPDL-LLLDEPTSGLDPASRERLLELLRE--LAEEGRTVIIVTH 138
Query: 384 PAPETYNLFDDIILLSDGQ 402
D +I+L DG+
Sbjct: 139 DPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 1e-06
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 25/184 (13%)
Query: 879 FRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITG--DIRISGYPKKQETFARISGY 933
F +TA +G +GAGKTT + +L G +G + G DI + +Q G
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL-----GM 1007
Query: 934 CEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGV 993
C Q++I +TV E + + A L+ + E ++ +E ++E L R
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNE-----EA 1059
Query: 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRTVVC 1050
LS +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT++
Sbjct: 1060 QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIM 1115
Query: 1051 TIHQ 1054
+ H
Sbjct: 1116 STHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 33/162 (20%), Positives = 49/162 (30%), Gaps = 50/162 (30%)
Query: 192 TTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTA----AYISQHDNHIGEMTVRETL 247
+TLL + G L P+ SG + +G + + + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 248 AFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLG 307
F R E L+ +G
Sbjct: 58 FFGLR------DKEADARAEE---------------------------------ALERVG 78
Query: 308 LDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDE 349
L D + SGGQK+RV ++ L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKV-SGRVTYNGHNMDEFVPE 225
ILK V+ +K G + L+GP SGK+TL + G P +V G + + G ++ + PE
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG--HPKYEVTEGEILFKGEDITDLPPE 72
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-06
Identities = 52/266 (19%), Positives = 97/266 (36%), Gaps = 59/266 (22%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF----- 222
+ D + G + +++G SGK+T + L ++P+ +G++ +G N+ +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVEL 65
Query: 223 --VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
V + + Q MT+ + + G E R+EKA +
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-------PEQERKEKALEL----- 113
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
LK++GL+ DE+ SGG ++RV +
Sbjct: 114 ----------------------LKLVGLEEYEHRY-PDEL----SGGMQQRVGLARALAA 146
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400
L MDE + LD + + K+ + ++ + E + D I+++
Sbjct: 147 EPDILLMDEAFSALDPLIRDSMQDELKK-LQATLQKTIVFITHDLDEAIRIGDRIVIMKA 205
Query: 401 GQIVYQG-PREL--------VLEFFE 417
G+IV G P E+ V EF
Sbjct: 206 GEIVQVGTPDEILRNPANEYVEEFIG 231
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 57/216 (26%), Positives = 85/216 (39%), Gaps = 44/216 (20%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG------ 919
EDK +L G++ RPG + A+MG +G+GK+TL LAGR+ G + G
Sbjct: 12 EDKAIL-RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLEL 70
Query: 920 ---------------YPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNS 964
YP I G Q + + V R ++
Sbjct: 71 SPEDRAGEGIFMAFQYP------VEIPGVSNQFFLQTALNAVRS-------YRGQEPLDR 117
Query: 965 ETRKMFIEEVMELVELKP--LRQSLVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDE 1021
+ +EE + L+++ L +S VN G S ++KR I V P + +DE
Sbjct: 118 FDFQDLMEEKIALLKMPEDLLTRS------VNVGFSGGEKKRNDILQMAVLEPELCILDE 171
Query: 1022 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1057
SGLD A IV V + D R+ + H I
Sbjct: 172 SDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 62/218 (28%), Positives = 98/218 (44%), Gaps = 37/218 (16%)
Query: 883 VLTALMGVSGAGKTTLM---DVLAGRKTGGYITGDIRISG---YPKKQETFA--RISGYC 934
+ ALMG SG GK+TL+ + L + G++R+ G Y + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 935 EQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE--LKP------LRQS 986
Q P +T+Y+++ + ++L V S+ +E+ E VE LK ++
Sbjct: 91 FQYPNPFPHLTIYDNV--AIGVKLNGLVKSK------KELDERVEWALKKAALWDEVKDR 142
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
L P LS QR+RL IA L P I+ MDEPT+ +D A + + +
Sbjct: 143 LNDYPS--NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEY 199
Query: 1047 TVVCTIHQPS----IDIFEAFDELFLMKRGGREVYVGP 1080
T+V H P+ + + AF L+L G+ + VGP
Sbjct: 200 TIVLVTHSPAQAARVSDYVAF--LYL----GKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 62/218 (28%), Positives = 98/218 (44%), Gaps = 37/218 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG---YITGDIRISGYPKKQET 926
L+G + PG + AL+G +GAGK+T+M VL G + G Y+ ++ +G QE
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE- 78
Query: 927 FARISGYCEQNDIHS-----PFVTVYESLFY-----SAWLRLPPEVNSETRKMFIEEVME 976
A I IH P +T+ E++F + + R+ + +KM+ E
Sbjct: 79 -AGIG------IIHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEADKL 125
Query: 977 LVELKPLRQS--LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1034
L L S LVG LS +++ + IA L +I MDEPT L +
Sbjct: 126 LARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL 180
Query: 1035 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
R +R GR +V H+ +IFE D++ + + G
Sbjct: 181 FRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 29/170 (17%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYITGDIRISG---YPKKQETF 927
V+ P +TA +G SG GK+T++ L R G + G++ + G Y +
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTL-NRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 928 A--RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR- 984
A R G Q P +++ +++ A L+L N K ++E++E K LR
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKL----NGVRNKKDLDELVE----KSLRG 131
Query: 985 -------QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
+ + PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 132 ANLWNEVKDRLDKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 64/256 (25%), Positives = 105/256 (41%), Gaps = 62/256 (24%)
Query: 843 SLTFDEV--VYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 900
S+ F+ V +YS P M+ +G L+ +S G AL+G +G+GK+TLM
Sbjct: 2 SIKFENVDYIYSPGTP--MEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQ 51
Query: 901 VLAG--RKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRL 958
+ + G IT I+GY ET G + V++
Sbjct: 52 HFNALLKPSSGTIT----IAGYHITPET-----GNKNLKKLRKKVSLVFQF--------- 93
Query: 959 PPEVNSETRKMFIEEVMELVELKPLR----------QSLVGLPGVNGLSTE--------- 999
PE ++F V++ VE P ++L L V GLS +
Sbjct: 94 -PEA-----QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFEL 146
Query: 1000 ---QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1056
Q +R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H
Sbjct: 147 SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD 206
Query: 1057 IDIFEAFDELFLMKRG 1072
D+ E D++ +++ G
Sbjct: 207 -DVAEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFARISG 932
VS R G A++G +G+GK+TL +LAG T G I + + RI
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 933 -YCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP 991
+ + N +P + + + L LRL ++ E R+ I E + +V L P +
Sbjct: 92 IFQDPNTSLNPRLRIGQIL--DFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY--- 146
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
+ L+ Q++R+ +A L+ P II DE + LD
Sbjct: 147 -PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 61/250 (24%), Positives = 96/250 (38%), Gaps = 57/250 (22%)
Query: 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF 222
+L D+S VK G + LGP +GKTT + + G + P SG +T++G + +
Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKN 67
Query: 223 --VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
R A I + +T RE L AR G+
Sbjct: 68 IEALRRIGALIEAPGFY-PNLTARENLRLLARLLGI--------------------RKKR 106
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
ID L V+GL A V G S G K+R+ ++G
Sbjct: 107 IDEV------------------LDVVGLKDSAKKKVK-----GFSLGMKQRLGIALALLG 143
Query: 341 -PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVIS--LLQPAPETYNLFDDIIL 397
P L L +DE + GLD ++ ++ T +IS LL E + D I +
Sbjct: 144 NPDL-LILDEPTNGLDPDGIKELRE-LILSLRDQGITVLISSHLLS---EIQKVADRIGI 198
Query: 398 LSDGQIVYQG 407
++ G+++ +G
Sbjct: 199 INKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 68/259 (26%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
L+DVS + G L GP +GK+TLL + G+ P+ G++ NGH++ + R
Sbjct: 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSR-LKGR 72
Query: 227 TAAYISQH------DNH-IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
++ + D + + TV E +A R G R E+ RR
Sbjct: 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR-----EIRRRVSEV------ 121
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR---GVSGGQKKRVTTGE 336
L ++GL + R +SGG+++RV
Sbjct: 122 -----------------------LDLVGL--------KHKARALPSQLSGGEQQRVAIAR 150
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHIN-SGTAVISLLQPAPETYNLFDD- 394
+V L DE + LD +++I+ F++ IN GT V+ A L +
Sbjct: 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE---INRLGTTVLM----ATHDLELVNRM 203
Query: 395 ---IILLSDGQIVYQGPRE 410
++ L DG++V R
Sbjct: 204 RHRVLALEDGRLVRDESRG 222
|
Length = 223 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 70/258 (27%), Positives = 111/258 (43%), Gaps = 65/258 (25%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRV-------TYNGHNMD 220
LK ++ + G + LLGP +GK+TL L G L P+ SG V Y+ ++
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLL 74
Query: 221 EFVPERTAAYISQH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
E +T + Q+ D+ + TV E +AF G+ E+ +R K A
Sbjct: 75 EV--RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA------ 121
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT-TGEMM 338
+KA EG E ++ +SGGQKKRV G +
Sbjct: 122 -----LKAVGMEGFE-----------------------NKPPHHLSGGQKKRVAIAGILA 153
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCF----KQNIHINSGTAVISLLQPAPETYNLFDD 394
+ P + + +DE ++GLD QI+ K+ I I T + L P Y D
Sbjct: 154 MKPEI-IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL---VP-VYA--DK 206
Query: 395 IILLSDGQIVYQG-PREL 411
+ ++SDG+I+ +G P+E+
Sbjct: 207 VYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 2e-06
Identities = 53/195 (27%), Positives = 75/195 (38%), Gaps = 52/195 (26%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
++ D+S + G LLGP +GK+T+ L G + P G++T + E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSR 71
Query: 227 TAA------YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ Q DN E TVRE L R G +S RE A I
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG----------MSTREIEAVIPS--- 118
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
L+ L+ AD V +SGG K+R+T ++
Sbjct: 119 ---------------------LLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 341 PALALFMDEISTGLD 355
L +DE +TGLD
Sbjct: 153 DPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 56/196 (28%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+L++VS + PG L+G +GK+TLL LAG+L+P SG VT
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKGL------- 66
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
Y+SQ E TV + + +G G E+L EL E+A + DPD ++
Sbjct: 67 -RVGYLSQEPPLDPEKTVLDYVI-----EGFGELRELLAEL---EEAYALLADPDDELLA 117
Query: 286 KAASTEGE------EANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
+ + E EA L LG D V +SGG ++RV ++
Sbjct: 118 ELEALLEELDGWTLEARAEEA--LLGLGFPD-EDRPVSS-----LSGGWRRRVALARALL 169
Query: 340 GPALALFMDEISTGLD 355
L +DE + LD
Sbjct: 170 EEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 67/284 (23%), Positives = 115/284 (40%), Gaps = 75/284 (26%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPSLKVSGRVTYNGHNM-----D 220
LK+++ + ++T L+GP GK+TLL +L L P +++ G+V ++G ++ D
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
R + Q N M++ + +A+ R G+ + E+ + K A + D
Sbjct: 77 VVELRRRVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAAL-WDEV 134
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
D +A LGL SGGQ++R+ +
Sbjct: 135 KDRLHDSA-----------------LGL----------------SGGQQQRLC-----IA 156
Query: 341 PALA-----LFMDEISTGLDSSTTFQI---VNCFKQNIHINSGTAVI---SLLQPAPETY 389
ALA L +DE ++ LD T +I + K+ T VI ++ Q A
Sbjct: 157 RALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKY-----TIVIVTHNMQQAA---- 207
Query: 390 NLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ D DG++V GP E + F + PK K D++
Sbjct: 208 RISDRTAFFYDGELVEYGPTE---QIFTN-----PKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 58/234 (24%), Positives = 96/234 (41%), Gaps = 43/234 (18%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
LK V+ ++ G L+G GK+TLL ++G P+ SG V G + E P+R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGPDRM 57
Query: 228 AAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKA 287
+ Q+ + + +TVRE +A A +L +LS+ E+ A
Sbjct: 58 VVF--QNYSLLPWLTVRENIALAVDR--------VLPDLSKSERRA-------------- 93
Query: 288 ASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFM 347
I + ++ ++GL AD G +SGG K+RV + L +
Sbjct: 94 ----------IVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 348 DEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401
DE LD+ T + Q I V+ + E L D +++L++G
Sbjct: 139 DEPFGALDALTRGNLQEELMQ-IWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 18/116 (15%)
Query: 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF- 222
+L D+S + G++ LLGP SGKTTLL +AG + SG + ++G ++
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLH 70
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREK--AAGIK 276
+R ++ QH MTV + +AF LT L RRE+ AA IK
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRERPNAAAIK 114
|
Length = 353 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 20/153 (13%)
Query: 889 GVSGAGKTTLMDVLAGRK---TGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVT 945
G SG GK+TL+ ++AG + +G G+ R++ P + R G Q+ P ++
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE----RGVGMVFQSYALYPHLS 91
Query: 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL--RQSLVGLPGVNGLSTEQRKR 1003
V E++ S L+L E + + +V E+++L L R+ LS QR+R
Sbjct: 92 VAENM--SFGLKLAGAKKEEINQR-VNQVAEVLQLAHLLDRKP-------KALSGGQRQR 141
Query: 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
+ I LVA PS+ +DEP S LDA A + MR
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 17/164 (10%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYITGDIRISGYPKKQE- 925
VS F +TA++G SG GK+T++ + + R TG + D I Y + +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI--YDRGVDP 80
Query: 926 -TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL-KPL 983
+ R G Q P +++Y+++ A +L VN +E ++ V L +
Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDEV 138
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
+ L LS Q++RL IA + P +I MDEP S LD
Sbjct: 139 KDRLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 50/172 (29%), Positives = 75/172 (43%), Gaps = 22/172 (12%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGDIRISGYPKKQ 924
D L ++G+S R G L+G SG+GK+TL G I G+IR G
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTL-----GLALLRLIPSQGEIRFDGQDIDG 352
Query: 925 ETFARISGYCEQNDIHSPFVTVYESL--------FYSAWLRL-PPEVNSETRKMFIEEVM 975
+ + + + F Y SL LR+ P++++ R + E +
Sbjct: 353 LSRKEMRPL--RRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410
Query: 976 ELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
E V L P + P + S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 411 EEVGLDP--ATRNRYP--HEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 18/177 (10%)
Query: 887 LMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG-------YPKKQETFA--RISGYCEQN 937
L+G SGAGK++L+ VL + +G + I+G P + R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90
Query: 938 DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997
P +TV E+L + P V ++ + +L++ L+ P LS
Sbjct: 91 YNLWPHLTVQENL-----IEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP--LHLS 143
Query: 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1054
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 57/219 (26%), Positives = 99/219 (45%), Gaps = 41/219 (18%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTL-------MDVLAGRKTGGYITGDIRISGYPKK 923
+L V +PG + G +G+GK++L +D+ G+ + I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL- 90
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLR--LPPEVNSETRKMFIEEVMELVELK 981
+R+S + + + + +S +R L PE +++ E +E+ +LK
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLW--EALEIAQLK 136
Query: 982 PLRQSLVGLPGVNGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1033
+ +SL G G++ + TE QR+ +A V SI+ MDE T+ +D I
Sbjct: 137 NMVKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENI 194
Query: 1034 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ + V T RTVV H+ S I +A D + ++ RG
Sbjct: 195 LQKVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 2e-06
Identities = 67/247 (27%), Positives = 109/247 (44%), Gaps = 46/247 (18%)
Query: 840 EPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 899
+ SLT + V + P+ +L G+S + G AL+G +G GK+TL+
Sbjct: 335 DQVSLTLNNVSF-----------TYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL 383
Query: 900 DVLAGRKTGGY--ITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYES--LFYSAW 955
+L T + G+I ++G P I+ Y E + V + LF SA
Sbjct: 384 QLL----TRAWDPQQGEILLNGQP--------IADYSEA-ALRQAISVVSQRVHLF-SAT 429
Query: 956 LR-----LPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP---GVNG--LSTEQRKRLT 1005
LR P + E + EV++ V L+ L + GL G G LS +++RL
Sbjct: 430 LRDNLLLAAPNASDEA----LIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLG 485
Query: 1006 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1065
IA L+ + ++ +DEPT GLDA ++ + +TV+ H+ + E FD
Sbjct: 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLA-EHAQNKTVLMITHR--LTGLEQFDR 542
Query: 1066 LFLMKRG 1072
+ +M G
Sbjct: 543 ICVMDNG 549
|
Length = 574 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 32/162 (19%)
Query: 884 LTALMGVSGAGKTTLMDVLAGRK---TGGYITGDIRISG---YPKKQETFA--RISGYCE 935
+TAL+G SG GK+T + L + I G++ + G Y K + + G
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 936 QNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV--------ELK-PLRQ 985
Q +PF +++Y+++ Y P ++ K +++++E E+K L++
Sbjct: 92 QKP--NPFPMSIYDNVAYG------PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK 143
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
S + L G Q++RL IA + P +I MDEPTS LD
Sbjct: 144 SALKLSG------GQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 975 MELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1034
+E VE+ R + LP S ++RL IA LV +P ++FMDEPT GLD A +
Sbjct: 135 LERVEIDAAR--IDDLPTT--FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 1035 MRTVRNTV-DTGRTVVCTIHQPSIDIFEA---FDELFLMKRG 1072
+ +R V + G VV H D+ A L +MK+G
Sbjct: 191 LDLLRGLVRELGLAVVIVTH----DLAVARLLAHRLLVMKQG 228
|
Length = 258 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-06
Identities = 63/260 (24%), Positives = 108/260 (41%), Gaps = 45/260 (17%)
Query: 157 ILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG 216
I+P K L+ +S ++ G ++GP SGK+TL + G P+ SG V +G
Sbjct: 324 IVPPGGKK-PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDG 379
Query: 217 HNMDEFVPE---RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAA 273
++ ++ E + Y+ Q D + TV E +A R+
Sbjct: 380 ADLKQWDRETFGKHIGYLPQ-DVELFPGTVAENIA----------RF------------- 415
Query: 274 GIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT 333
G DP+ + EA + + +L L DT++G +SGGQ++R+
Sbjct: 416 GENADPEKII----------EAAKLAGVHELILRLPDGYDTVIGPG-GATLSGGQRQRIA 464
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393
+ G + +DE ++ LD + N K + T V+ +P+ D
Sbjct: 465 LARALYGDPKLVVLDEPNSNLDEEGEQALANAIKA-LKARGITVVVITHRPS--LLGCVD 521
Query: 394 DIILLSDGQIVYQGPRELVL 413
I++L DG+I G R+ VL
Sbjct: 522 KILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 48/234 (20%), Positives = 89/234 (38%), Gaps = 44/234 (18%)
Query: 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQ 233
G +T ++GP SGK+TLL +AG P SGRV NG ++ P +R + + Q
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 234 HDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGE 293
+N +TV + + G+ ++ E R+ + K
Sbjct: 78 ENNLFAHLTVEQNVGL-----GLSPGLKLTAE--DRQAIEVALARVGLAGLEK------- 123
Query: 294 EANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTG 353
+ +SGG+++RV ++V L +DE
Sbjct: 124 -------------------------RLPGELSGGERQRVALARVLVRDKPVLLLDEPFAA 158
Query: 354 LDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG 407
LD + ++++ +H + V+ + + L ++ L +G+I QG
Sbjct: 159 LDPALRAEMLDLVLD-LHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-06
Identities = 70/253 (27%), Positives = 109/253 (43%), Gaps = 49/253 (19%)
Query: 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 904
FD+V +S D QGV VS +PG A++G +GAGK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGV--------EDVSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 905 RKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFY----SAWLRL-- 958
++ +G I I G I + + V ++ + +R+
Sbjct: 382 QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 959 PPEVNSETRKMF-IEEVMELVELKPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSI 1016
P + E R + + +E KP ++VG G LS +R+RL IA L+ +P I
Sbjct: 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPI 492
Query: 1017 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS-------IDIFEA------- 1062
+ +DE TS LD A V + + + GRT H+ S I +F+
Sbjct: 493 LILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESG 551
Query: 1063 -FDELFLMKRGGR 1074
FDE L+ RGGR
Sbjct: 552 SFDE--LVARGGR 562
|
Length = 588 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 38/230 (16%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPK 922
P + L VS G A++G +G+GK+T+ +L G + G +I+I G
Sbjct: 18 PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG----EIKIDGITI 73
Query: 923 KQETFARIS---GYCEQN-DIHSPFV--TVYESLFYSAWLRLPPEVNSETRKMFIEEVME 976
+E I G QN D + F+ TV + + + + V + K I+++ +
Sbjct: 74 SKENLKEIRKKIGIIFQNPD--NQFIGATVEDDIAFGLENKK---VPPKKMKDIIDDLAK 128
Query: 977 LVELKPL--RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1034
V ++ ++ LS Q++R+ IA L NP II DE TS LD + +
Sbjct: 129 KVGMEDYLDKEPQ-------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREI 181
Query: 1035 ---MRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELFLMKRGGREVYVG 1079
M +R T +T++ H D+ EA D++ + G+ + G
Sbjct: 182 KKIMVDLRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 28/196 (14%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISGYPKKQ 924
LN ++ +TAL+G SG GK+T + D++ G K I G++ G
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYS 78
Query: 925 ETF-----ARISGYCEQNDIHSPFV-TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
F R G Q +PF+ ++Y+++ Y P+++ K ++E++E
Sbjct: 79 NNFDILELRRKIGMVFQTP--NPFLMSIYDNISYG------PKIHGTKDKKKLDEIVEQS 130
Query: 979 ELKP-LRQSLVGLPGVNGLSTE--QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
K L + N LS Q++RL IA L P++I MDEPTS LD + +
Sbjct: 131 LKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIE 190
Query: 1036 RTVRNTVDTGRTVVCT 1051
+ N ++ ++ T
Sbjct: 191 ELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 3e-06
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 11/188 (5%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--AGRKTGGY-ITGDIRISGYP----KK 923
+L+ VS F +T+LMG +G+GKTT + L K GY +GD+ + G +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
F R G Q P + L +L P E R + + E+ +
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR--KEFRGVAQARLTEVGLWDAV 153
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
+ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+ D
Sbjct: 154 KDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD 211
Query: 1044 TGRTVVCT 1051
++ T
Sbjct: 212 RLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 3e-06
Identities = 59/283 (20%), Positives = 101/283 (35%), Gaps = 93/283 (32%)
Query: 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN----- 218
L L +VS + G ++G SGKTT + L L P +G + + +
Sbjct: 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKK 75
Query: 219 --------MDEFVPERTAA----YISQHDNHIG-----------EMTVRETLAFAARCQG 255
+++ V ++T I + +G E T+ + + F G
Sbjct: 76 KTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMG 135
Query: 256 VGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTM 315
V EEA Y++++GLD
Sbjct: 136 V----------------------------------SKEEAKKRAAKYIELVGLDE----- 156
Query: 316 VGDEMRR---GVSGGQKKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIH 371
++R +SGGQK+RV G + + P L DE + GLD +I+ F N++
Sbjct: 157 --SYLQRSPFELSGGQKRRVALAGILAMEPDF-LVFDEPTAGLDPQGVKEILEIFD-NLN 212
Query: 372 INSGTAVISLLQPAPETYNLFDDI-------ILLSDGQIVYQG 407
T ++ T++L D++ I DG+I+ G
Sbjct: 213 KQGKTIILV-------THDL-DNVLEWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 4e-06
Identities = 53/237 (22%), Positives = 92/237 (38%), Gaps = 46/237 (19%)
Query: 181 TLLLGPPSSGKTTLLLALAGKLDPS---LKVSGRVTYNGHNMDEFVPERTA-AYISQHDN 236
T + G SGKTTL+ +AG P + ++GR ++ PE+ Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEAN 296
++VR L RY M +R E
Sbjct: 86 LFPHLSVRGNL-----------RYGM-----KR--------------------ARPSERR 109
Query: 297 VITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDS 356
+ + +++LG+ + G +SGG+K+RV G ++ L MDE LD
Sbjct: 110 ISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
Query: 357 STTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 413
++I+ + + +H G ++ + E L D +++L DG++ GP V
Sbjct: 165 PRKYEILP-YLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 68/250 (27%), Positives = 102/250 (40%), Gaps = 66/250 (26%)
Query: 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPS---LKVSGRVTYNGHNMDEFVPERTAAYI 231
G L LLGP +GKTTLL A+ G + P+ +KV+G G +VP+R
Sbjct: 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR----- 57
Query: 232 SQH----DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKA 287
H D I +V T+ +S R G P + F
Sbjct: 58 --HEFAWDFPI---SVAHTV------------------MSGRTGHIGWLRRPCVADF--- 91
Query: 288 ASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA--- 344
L+ +GL AD VG+ +SGGQ++RV +V ALA
Sbjct: 92 ---------AAVRDALRRVGLTELADRPVGE-----LSGGQRQRV-----LVARALATRP 132
Query: 345 --LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
L +DE TGLD T + F + +GTA++ + D ++LL +G+
Sbjct: 133 SVLLLDEPFTGLDMPTQELLTELFIE--LAGAGTAILMTTHDLAQAMATCDRVVLL-NGR 189
Query: 403 IVYQG-PREL 411
++ G P++L
Sbjct: 190 VIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 4e-06
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 17/206 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L ++ + G ++G +G+GK+TL L G R G + +G K + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 930 ISGYCEQNDIHSPFV--TVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
+ G QN + FV TV E L F L LPP E RK ++ + + L+ R
Sbjct: 78 LVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPP---IEIRKR-VDRALAEIGLEKYRHR 132
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
LS Q + + +A L P + DE TS LD + V+ ++ + G+
Sbjct: 133 -----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRG 1072
T+V H +++ D + +M RG
Sbjct: 188 TIVYITH--NLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 4e-06
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 20/194 (10%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR 929
LL+ ++ RPG + G SGAGKT+L+ LAG + +G I P
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSALL-- 459
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
+ Q + P T+ E+L Y P+ + + V+ V L L + L
Sbjct: 460 ---FLPQRP-YLPQGTLREALCYP---NAAPDFSDAE----LVAVLHKVGLGDLAERLDE 508
Query: 990 L-PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1048
LS +++RL A L+ P +F+DE TS LD + + ++ + TV
Sbjct: 509 EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATV 567
Query: 1049 VCTIHQPSIDIFEA 1062
+ H+P++ F +
Sbjct: 568 ISVGHRPTLWNFHS 581
|
Length = 604 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 4e-06
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 41/207 (19%)
Query: 882 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDI-- 939
G + L+G SG GKTT++ ++AG + G I I G + T I +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG---EDVTHRSI----QQRDICM 82
Query: 940 --HS----PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGV 993
S P +++ E++ Y L++ V E RK ++E +ELV+L V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGRTV 1048
+ +S Q++R+ +A L+ P ++ DEP S LDA + R++R + T
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITS 190
Query: 1049 VCTIHQPSIDIFEAF---DELFLMKRG 1072
+ H S EAF D + +M +G
Sbjct: 191 LYVTHDQS----EAFAVSDTVIVMNKG 213
|
Length = 351 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 17/175 (9%)
Query: 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIH 940
G + G +GAGKTTL+ VLAG +G I+I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 941 SPFVTVYESLFYSAWL--RLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998
++ E+L + L R ++ + +V L +L V LS
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQMPGSA--------LAIVGLAGYEDTL-----VRQLSA 140
Query: 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1053
Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 141 GQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 47/181 (25%), Positives = 64/181 (35%), Gaps = 45/181 (24%)
Query: 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQH 234
V G L+ G +GKTTLL LAG L SG++ +G R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLGHL 90
Query: 235 DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEE 294
+++ E L F G RR K G
Sbjct: 91 PGLKADLSTLENLHFLCGLHG------------RRAK-----------------QMPGSA 121
Query: 295 ANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGL 354
L ++GL DT+V R +S GQKKR+ + + PA +DE L
Sbjct: 122 --------LAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANL 168
Query: 355 D 355
D
Sbjct: 169 D 169
|
Length = 214 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 66/267 (24%), Positives = 115/267 (43%), Gaps = 50/267 (18%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM-DEFVP-- 224
L +V+ ++ G L+G SGK+TL+ L G L P+ SG++ +G ++ D+ V
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLS 79
Query: 225 --ERTAAYISQHDNH-IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
+ + Q+ + + E T+ + +AF G+ E+ R K A
Sbjct: 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSE-----EEIENRVKRA-------- 126
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGP 341
+ ++GLD + D+ +SGGQK+RV ++
Sbjct: 127 ---------------------MNIVGLDY--EDY-KDKSPFELSGGQKRRVAIAGVVAME 162
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401
L +DE + GLD +I+N K +H +I + + L D II+++ G
Sbjct: 163 PKILILDEPTAGLDPKGRDEILNKIK-ELHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221
Query: 402 QIVYQG-PRELV--LEFFESMGFKCPK 425
+ QG PRE+ +E ES+G P+
Sbjct: 222 KCELQGTPREVFKEVETLESIGLAVPQ 248
|
Length = 287 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-06
Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGDIRISGYPKKQE 925
V++ +S RPG L+G SG+GK+T L+ ++ + G+I G P
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLHN- 351
Query: 926 TFARISGYCEQNDIHSPFVTVYESL--------FYSAWLRL-PPEVNSETRKMFIEEVME 976
R ++ I F SL LR+ P +++ R+ + VME
Sbjct: 352 -LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVME 410
Query: 977 LVELKP-LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
V L P R P S QR+R+ IA L+ PS+I +DEPTS LD
Sbjct: 411 EVGLDPETRHRY---PA--EFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 40/185 (21%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISG---YP 921
L +S +TA +G SG GK+TL+ D++ + I G+IR+ G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 922 KKQE--TFARISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
KK + R G Q +PF ++YE++ Y LRL N ++E +E
Sbjct: 97 KKVDVAELRRRVGMVFQRP--NPFPKSIYENVVYG--LRLQGINNRRV----LDEAVERS 148
Query: 979 --------ELKP-LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
E+K L ++ GL G Q++RL IA + P ++ +DEPTS LD
Sbjct: 149 LRGAALWDEVKDRLHENAFGLSG------GQQQRLVIARAIAIEPEVLLLDEPTSALDPI 202
Query: 1030 AAAIV 1034
+ +
Sbjct: 203 STLKI 207
|
Length = 272 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 5e-06
Identities = 41/165 (24%), Positives = 58/165 (35%), Gaps = 59/165 (35%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
++GVS + + G L+G SG GK+TL ++ G T G I + K T
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL-------FEGKDITKLS 81
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL------ 983
E R+ + E++E V L
Sbjct: 82 ---------------------------------KEERRER-VLELLEKVGLPEEFLYRYP 107
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
+ LS QR+R+ IA L NP +I DEP S LD
Sbjct: 108 HE----------LSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 24/193 (12%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIR-ISGYPKKQETF 927
+LN +S + R G A+ G SG GK+TL+ ++A T G + + +S K E +
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL--KPEAY 75
Query: 928 ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSET-RKMFIEEVMELVELKPLRQS 986
+ YC Q TV ++L + +R N R ++ L+ L S
Sbjct: 76 RQQVSYCAQTPALFG-DTVEDNLIFPWQIR-----NRRPDRAAALD----LLARFALPDS 125
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA----AIVMRTVRNTV 1042
++ + LS +++R+ + L P I+ +DE TS LD ++ R VR
Sbjct: 126 ILTKN-ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR--- 181
Query: 1043 DTGRTVVCTIHQP 1055
+ V+ H
Sbjct: 182 EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 49/210 (23%), Positives = 86/210 (40%), Gaps = 16/210 (7%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGDIRISGYPKKQET 926
L+ ++ + + G + AL+G SG+GK+ ++ +L T +G+I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 927 F-ARISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
R QN + P T+ + + I E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARAL---ILEALEAVGLPDP 115
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1042
+ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 1043 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
G ++ H + + DE+ +M G
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDDG 202
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 48/205 (23%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPSLKVSGRVTYNGHNM-----D 220
L D++ + ++T L+GP GK+T L L L ++K+ G V +G N+ D
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ + Q N M++ + +A+ R G+ + E+ D
Sbjct: 80 VVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKDKKEL---------------DKI 123
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR---GVSGGQKKRVTTGEM 337
++ +K A+ E V D++++ +SGGQ++R+
Sbjct: 124 VEWALKKAALWDE----------------------VKDDLKKSALKLSGGQQQRLCIART 161
Query: 338 MVGPALALFMDEISTGLDSSTTFQI 362
+ + MDE ++ LD +T +I
Sbjct: 162 IAVKPDVILMDEPTSALDPISTLKI 186
|
Length = 251 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 6e-06
Identities = 40/195 (20%), Positives = 79/195 (40%), Gaps = 34/195 (17%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAGR------KTGGYITGDIRISGY--PKKQETFARIS 931
R G + L+G +G GK+T + +LAG+ K D + + + Q F ++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 932 GYCEQNDIHSP-FVTVYESLFYSAWLRLPPEVNSETRKM--------FIEEVMELVELKP 982
+ I P +V +P V + ++ ++E+++ +EL+
Sbjct: 84 EG-DVKVIVKPQYVD-----------LIPKAVKGKVGELLKKKDERGKLDELVDQLELRH 131
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1042
+ ++ LS + +R+ IA L + F DEP+S LD + R +R
Sbjct: 132 VLDR-----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELA 186
Query: 1043 DTGRTVVCTIHQPSI 1057
+ V+ H ++
Sbjct: 187 EDDNYVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 7e-06
Identities = 50/195 (25%), Positives = 73/195 (37%), Gaps = 52/195 (26%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
++ +S V G LLGP +GK+T+ + G P +G++T + VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITV----LGVPVPAR 108
Query: 227 TAA------YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ Q DN E TVRE L R G+ TR
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTR--------------------- 147
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
E + L+ L+ AD V D +SGG K+R+T ++
Sbjct: 148 -------------EIEAVIPSLLEFARLESKADARVSD-----LSGGMKRRLTLARALIN 189
Query: 341 PALALFMDEISTGLD 355
L +DE +TGLD
Sbjct: 190 DPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 7e-06
Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 19/190 (10%)
Query: 873 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGDIRI---SGYPKKQET 926
+S + G + G+ G+G+T LM+ L G R G I S ++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 927 FARISGYCEQNDIHSPF-----VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
A I+ N F + + SL + + + E EL+ LK
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 982 --PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
+ Q++ L G N Q+K L I+ L P +I DEPT G+D A A + + +R
Sbjct: 400 CHSVNQNITELSGGN-----QQKVL-ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 1040 NTVDTGRTVV 1049
D G+ ++
Sbjct: 454 QLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 7e-06
Identities = 50/197 (25%), Positives = 78/197 (39%), Gaps = 46/197 (23%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGDIRISGYPKKQETFARISGYCEQ 936
RPG + ++G +G GK+T + +LAG G Y P E R G Q
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRY-------EDPPSWDEVIKRFRGTELQ 150
Query: 937 NDIHSPFVTVYESLFYSAWLR----------LPPEVNSETRKM--------FIEEVMELV 978
N Y Y LR +P V + ++ +EV+E +
Sbjct: 151 N---------YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERL 201
Query: 979 ELKPL--RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
L+ + R V+ LS + +R+ IA L+ + + F DEP+S LD R R
Sbjct: 202 GLENVLDRD-------VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAAR 254
Query: 1037 TVRNTVDTGRTVVCTIH 1053
+R + G+ V+ H
Sbjct: 255 VIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 8e-06
Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 26/212 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L+ V+ RP + ALMG +GAGK+TL+ L G +K +G I G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 930 ISGYCEQNDI---HSPFVTVYE-SLFYSAWL-RLPPEVNSETRKMFIEEVMELVELKPLR 984
S +N I H V + S+ + WL R P T+ MF+++ + K +
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP------TKGMFVDQDKMYRDTKAIF 119
Query: 985 QSL-VGL---PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
L + + V LS Q + + IA N I+ MDEPTS L + + +R
Sbjct: 120 DELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRK 179
Query: 1041 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ G +V H+ +IF+ DE+ +++ G
Sbjct: 180 LKERGCGIVYISHKME-EIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 9e-06
Identities = 57/239 (23%), Positives = 95/239 (39%), Gaps = 47/239 (19%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-- 225
L +VS + GR+ LGP +GK+T + + G L P SG V G ++ + E
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQ 74
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
R Y+ +H+ +M VRE L F + Y M +L ++ I
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQF------IAGIYGMKGQLLKQRVEEMI---------- 118
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALAL 345
E + + + K+ L S G ++RV + ++ L
Sbjct: 119 -------ELVGLRPEQHKKIGQL----------------SKGYRQRVGLAQALIHDPKVL 155
Query: 346 FMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404
+DE +TGLD + +I N K I +I E + D +I+++ G+IV
Sbjct: 156 ILDEPTTGLDPNQLVEIRNVIKN---IGKDKTIILSTHIMQEVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 9e-06
Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 25/184 (13%)
Query: 886 ALMGVSGAGKTTLMDVL--------AGRKTGG---YITGDI-RISGYPKKQETFARISGY 933
+MG SG+GK+TL+ VL + K G Y DI +I ++E G
Sbjct: 40 GIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEV-----GM 94
Query: 934 CEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETR--KMFIEEVMELVELKPLRQSLVGLP 991
Q P +++Y+++ Y L E R K +EE + V L + P
Sbjct: 95 VFQQPNPFPHLSIYDNIAYP----LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSP 150
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1051
+ LS Q++RLTIA L P ++ MDEPTS +D + + + + + +V
Sbjct: 151 A-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKNEIAIVIV 208
Query: 1052 IHQP 1055
H P
Sbjct: 209 SHNP 212
|
Length = 257 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 56/280 (20%), Positives = 98/280 (35%), Gaps = 76/280 (27%)
Query: 159 PSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218
K L +VS ++ G ++G SGK+TL LAG PS SG + +G
Sbjct: 14 GGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKP 70
Query: 219 MDEFVPERTAA----YISQH-DNHIG-EMTVRETLAFAARCQGVGTR----YEMLTELSR 268
+ + + Q + + TV L+ R G+ E+L ++
Sbjct: 71 LAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQV-- 128
Query: 269 REKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328
G+ P + ++ G GQ
Sbjct: 129 -----GLPPS------------------FLDRRPHELSG-------------------GQ 146
Query: 329 KKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQN--------IHINSGTAVI 379
++R+ ++ P L L +DE ++ LD S QI+N + + I+ A++
Sbjct: 147 RQRIAIARALIPEPKL-LILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV 205
Query: 380 SLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 419
++ D I ++ +GQIV GP E +L
Sbjct: 206 ---------EHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 11/162 (6%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETF 927
+LN +S G + AL+G SG+GKTTL+ ++AG +T G+I +S +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 928 ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
R G+ Q+ +TV++++ + L + P +V +L+E+ L
Sbjct: 74 -RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
P LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 131 DRYPA--QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 47/183 (25%), Positives = 87/183 (47%), Gaps = 18/183 (9%)
Query: 882 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFARISGYCEQNDI 939
G LT ++G G GK++L+ + G + G + + P + T +R + Y
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR-NRYSVAYAA 85
Query: 940 HSPFV---TVYESLFYSAWLRLPPEVNSETRKMFIE--EVMELVELKPL-RQSLVGLPGV 993
P++ TV E++ + + N + K + + ++L P Q+ +G G+
Sbjct: 86 QKPWLLNATVEENITFGS------PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGI 139
Query: 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRTVVCT 1051
N LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D RT+V
Sbjct: 140 N-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV 198
Query: 1052 IHQ 1054
H+
Sbjct: 199 THK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 32/162 (19%)
Query: 884 LTALMGVSGAGKTT-------LMDVLAGRKTGG---YITGDIRISGYPKKQETFARISGY 933
+TA++G SG GK+T +++++ KT G Y +I Y +E +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 934 CEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG--- 989
++ + PF ++Y+++ Y P+++ K ++E++E K LR + +
Sbjct: 111 FQKPN---PFPKSIYDNVTYG------PKIHGIKDKKTLDEIVE----KSLRGAAIWDEL 157
Query: 990 ----LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 158 KDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1054
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIR-ISGYPKKQ 924
K+ L+ VS G + L+G +GAGKTTL+ L G R T G I D + I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 925 ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-L 983
++ E + S +TV E+L + R F E + + EL P L
Sbjct: 77 IMREAVAIVPEGRRVFSR-MTVEENLAMGGFF--------AERDQFQERIKWVYELFPRL 127
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
+ + G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++
Sbjct: 128 HERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIE 181
Query: 1044 TGRTVVCTI 1052
R TI
Sbjct: 182 QLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-05
Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 46/183 (25%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GDIRISGYPKKQETFARI 930
+ G+ G L+G SG GK+TL+ ++AG + IT G+I I G R+
Sbjct: 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGG---------RV 67
Query: 931 SGYCE----------QNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL 980
E QN P ++V E++ Y +R P+ E R + E ++EL
Sbjct: 68 VNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEER---VAEAARILEL 124
Query: 981 KPL-----RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAI 1033
+PL R+ LS QR+R+ + +V P++ DEP S LDA R
Sbjct: 125 EPLLDRKPRE----------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ-- 172
Query: 1034 VMR 1036
MR
Sbjct: 173 -MR 174
|
Length = 356 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 14/165 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYITGDIRISGYP--KKQET 926
L ++ + +TA++G SG GK+T ++++ +TG++ +G K +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 927 FARIS---GYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
+ G Q +PF ++++++ Y R+ N + + +E+ ++ V L
Sbjct: 88 LVELRKNIGMVFQKG--NPFPQSIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALWD 143
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
+ + + LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 144 EVKDRLHTQAL-SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 52/211 (24%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGDIRISGYPK 922
PE + +L +S + G AL+G SG+GK+TL+ +L TG G+I + G P
Sbjct: 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLL----TGDLKPQQGEITLDGVP- 65
Query: 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
+S + + S + + P + T
Sbjct: 66 -------VSDL--EKALSSLISVLNQR----------PYLFDTT---------------- 90
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1042
LR +L G S +R+RL +A L+ + I+ +DEPT GLD ++ + V
Sbjct: 91 LRNNL-GRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-V 144
Query: 1043 DTGRTVV-CTIHQPSIDIFEAFDELFLMKRG 1072
+T++ T H I E D++ ++ G
Sbjct: 145 LKDKTLIWITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGDIRISGYPKKQ 924
+L+ + G + ++G SG+GK+TL+ + L +G I ++++ PK
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVD 71
Query: 925 ETFARI-SGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
E R +G Q P +T E++ + P V +++ ++ EL+ L
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFG-----PLRVRGASKEEAEKQARELLAKVGL 126
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
+ P + LS Q++R+ IA L P ++ DEPTS LD V++ +++ +
Sbjct: 127 AERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE 184
Query: 1044 TGRTVVCTIHQ 1054
G T+V H+
Sbjct: 185 EGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 67/253 (26%), Positives = 104/253 (41%), Gaps = 50/253 (19%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
ILK +S ++ G ++GP SGK+TL L G P SG V +G ++ ++ E
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP---TSGSVRLDGADLRQWDRE- 406
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
Q HIG + Q V L + + E A + D + ++
Sbjct: 407 ------QLGRHIGYLP-----------QDV-----ELFDGTIAENIARFGEEADPEKVIE 444
Query: 287 AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG-PALAL 345
AA + + +L L DT +G+ +SGGQ++R+ + G P L +
Sbjct: 445 AA--------RLAGVHELILRLPQGYDTRIGEG-GATLSGGQRQRIALARALYGDPFL-V 494
Query: 346 FMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI-----SLLQPAPETYNLFDDIILLSD 400
+DE ++ LDS + GT V+ S L D I++L D
Sbjct: 495 VLDEPNSNLDSEGEAALAAAILA-AKARGGTVVVIAHRPSALASV-------DKILVLQD 546
Query: 401 GQIVYQGPRELVL 413
G+I GPRE VL
Sbjct: 547 GRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 46/217 (21%), Positives = 68/217 (31%), Gaps = 52/217 (23%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
+ +S + G + GP SGKTTLL LAG P +GRV NG +D
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRD 69
Query: 225 E--RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
R Y+ ++V E L F E L
Sbjct: 70 SIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALAR----------------- 112
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
+GL+ D V +S GQ++RV +++
Sbjct: 113 -----------------------VGLNGFEDRPVAQ-----LSAGQQRRVALARLLLSGR 144
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI 379
+DE +T LD + + H G V+
Sbjct: 145 PLWILDEPTTALDKAGVARFAEAMAG--HCARGGMVV 179
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-05
Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 21/214 (9%)
Query: 847 DEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-R 905
EVV V+ L + + VS R G + + GV+G G++ L++ ++G R
Sbjct: 254 GEVVLEVE-----DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR 308
Query: 906 KTGGYITGDIRISGYPKKQETFARIS-----GYCEQNDIH---SPFVTVYESLFYSAWLR 957
K +G I ++G R Y ++ +++ E+L
Sbjct: 309 KP---ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG-RHD 364
Query: 958 LPPEVNSE-TRKMFIEE-VMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPS 1015
P + I + EL+E +R P LS +++L +A EL P
Sbjct: 365 KKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP-ARSLSGGNQQKLILARELARRPD 423
Query: 1016 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
++ +PT GLD A + + D G+ V+
Sbjct: 424 LLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 50/200 (25%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
L L +++ + G+LT+++G GK++LLLA+ G++ + G+V ++ N E
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSF 70
Query: 225 ERT-------AAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP 277
E T AY +Q + TV E + F + RY+ +T+ A ++P
Sbjct: 71 EATRSRNRYSVAYAAQ-KPWLLNATVEENITFGSPFN--KQRYKAVTD------ACSLQP 121
Query: 278 DPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTG 335
D D+ F G++ T +G+ RG+ SGGQ++R+
Sbjct: 122 DIDLLPF-------GDQ-------------------TEIGE---RGINLSGGQRQRICVA 152
Query: 336 EMMVGPALALFMDEISTGLD 355
+ +F+D+ + LD
Sbjct: 153 RALYQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1054
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 42/170 (24%)
Query: 884 LTALMGVSGAGKTTLM-------DVLAGRKTGGYI--------TGDIRISGYPKKQETFA 928
+TA++G SG GKTTL+ D + G + G I + ++ Y KK
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKK----- 85
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
G Q P +++Y+++ + P ++ K ++ ++E + L+++ +
Sbjct: 86 --VGMVFQKPTPFP-MSIYDNVAFG------PRIHGVKSKHKLDRIVE----ESLKKAAL 132
Query: 989 --------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
PG LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 133 WDEVKSELNKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 884 LTALMGVSGAGKTTLMDVLAGRKTG-GYITGDIRISGYPKKQETFA----RISGYCEQND 938
+TAL+G SG GK+T + I G + I G K + + +Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 939 IHSPFV-TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL-----KPLRQSLVGLPG 992
+ FV ++YE++ Y+ L + N + + + + ++ V L L+Q+ + L G
Sbjct: 90 V---FVKSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSG 145
Query: 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 146 ------GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-05
Identities = 49/175 (28%), Positives = 72/175 (41%), Gaps = 24/175 (13%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL--MDVLAGRKTGG--YITGDIRISGY 920
PE + L+GVS G A++G SG GK+TL + + TGG Y G +
Sbjct: 24 PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKA 82
Query: 921 PKKQETFARISGYCEQNDIHSPFVTVYESL----FYSAWLRLPPEVNSE----TRKMFIE 972
+ + R I F Y SL L P +N+ R+
Sbjct: 83 DPEAQKLLR-------QKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKAL 135
Query: 973 EVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
+M V L+P + P + S QR+R+ IA L+ +P ++ DEP S LD
Sbjct: 136 AMMAKVGLRP--EHYDRYPHM--FSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 76/279 (27%), Positives = 117/279 (41%), Gaps = 60/279 (21%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS---LKVSGRVTYNGHNMDEFVP 224
L DV+ VK G ++LG SGK+T+ + L PS + V G T + N+ +
Sbjct: 26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI-- 83
Query: 225 ERTAAYISQH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
A + Q+ DN I V E +AF E L GI P
Sbjct: 84 RNKAGMVFQNPDNQIVATIVEEDVAFGP---------ENL----------GIPP------ 118
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG----VSGGQKKRVT-TGEMM 338
EE D LK +G+ E RR +SGGQK+RV G +
Sbjct: 119 ---------EEIRERVDESLKKVGMY---------EYRRHAPHLLSGGQKQRVAIAGILA 160
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398
+ P +F DE + LD S ++VN K+ ++ G +I + E D II++
Sbjct: 161 MRPECIIF-DEPTAMLDPSGRREVVNTIKE-LNKKYGITIILITHYMEEAVEA-DRIIVM 217
Query: 399 SDGQIVYQG-PRELV--LEFFESMGFKCPKRKGVADFLQ 434
G++V +G P+E+ +E + +G P+ +A L+
Sbjct: 218 DSGKVVMEGTPKEIFKEVEMMKKIGLDVPQVTELAYELK 256
|
Length = 280 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-05
Identities = 58/247 (23%), Positives = 92/247 (37%), Gaps = 59/247 (23%)
Query: 177 PGR-LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM-----DEFVP--ERTA 228
P R +T L GP SGKT+L+ +AG P GR+ NG + F+P +R
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRI 78
Query: 229 AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAA 288
Y+ Q TVR L + M +
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYG----------------------------------MWKS 104
Query: 289 STEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE-MMVGPALALFM 347
D + +LG++ D G +SGG+K+RV G ++ P L L M
Sbjct: 105 MRAQ------FDQLVALLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAPEL-LLM 152
Query: 348 DEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG 407
DE LD +I+ + + + ++ + E L D +++L +G++ G
Sbjct: 153 DEPLASLDLPRKREILP-YLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
Query: 408 PRELVLE 414
P E V
Sbjct: 212 PLEEVWG 218
|
Length = 352 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 323 GVSGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISL 381
G SGG+KKR ++++ P LA+ DE +GLD + + +I+
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 382 LQPAPETYNLFDDII-----LLSDGQIVYQGPRELVLEFFE 417
Q L D I +L DG+IV G +EL LE +
Sbjct: 163 YQ------RLLDYIKPDRVHVLYDGRIVKSGDKELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 57/247 (23%), Positives = 98/247 (39%), Gaps = 41/247 (16%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAG--KLDPSLKVSGRVTYNGHN---MDE 221
+L V+ + +T L+GP SGK+TLL +L P +VSG V +G + MD
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
R + Q N I +++ E +A +G + L + S++E ++
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFENVA-------LGLKLNRLVK-SKKELQERVRWA--- 126
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGP 341
++ A E + LD A + SGGQ++R+ +
Sbjct: 127 ---LEKAQLWDEVKD----------RLDAPAGKL---------SGGQQQRLCIARALAFQ 164
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401
L DE + LD T +I + F + + ++ + + + D + L G
Sbjct: 165 PEVLLADEPTANLDPENTAKIESLF---LELKKDMTIVLVTHFPQQAARISDYVAFLYKG 221
Query: 402 QIVYQGP 408
QIV GP
Sbjct: 222 QIVEWGP 228
|
Length = 250 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 64/248 (25%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
IL ++S V+ G + GP GK+TLL +A + P+ SG + + G ++ PE
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEA 74
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD--I 281
+ +Y +Q G+ TV + L F + +PD +
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFPWQ-------------------IRNRRPDRAAAL 114
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT-TGEMMVG 340
D+ + A + IT+ +SGG+K+R+ +
Sbjct: 115 DLLARFALPDSILTKNITE-----------------------LSGGEKQRIALIRNLQFM 151
Query: 341 PALALFMDEISTGLDSSTTFQIVNCF-----KQNIHINSGTAVISLLQPAPETYNLFDDI 395
P + L +DEI++ LD S I +QN+ AV+ + + D +
Sbjct: 152 PKI-LLLDEITSALDESNKRNIEEMIHRYVREQNV------AVLWITHDKDQAIRHADKV 204
Query: 396 ILLSDGQI 403
I L G
Sbjct: 205 ITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218
+LK++S +K G LLG SGK+TLL L G L P G +T +G
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVP 65
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
IL ++S ++ G L+ GP GK+TLL +A + P+ SG + + G ++ PE
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPE 77
Query: 226 R---TAAYISQHDNHIGEMTVRETLAF 249
+Y +Q G+ TV + L F
Sbjct: 78 IYRQQVSYCAQTPTLFGD-TVYDNLIF 103
|
Length = 225 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 23/78 (29%), Positives = 35/78 (44%)
Query: 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDN 236
PG + L++GPP SGKTTL ALA +L P + + + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 237 HIGEMTVRETLAFAARCQ 254
GE+ +R LA A + +
Sbjct: 61 GSGELRLRLALALARKLK 78
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 3e-05
Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 38/205 (18%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
+ DVS K G+ ++GP +GKTTL+ L DP+ G++ +G ++
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDI-------- 399
Query: 228 AAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKA 287
N + ++R+++A + G+ R S RE + + +A
Sbjct: 400 --------NTVTRESLRKSIATVFQDAGLFNR-------SIRENIRLGREGATDEEVYEA 444
Query: 288 ASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFM 347
A +A D+ LK DT+VG+ R +SGG+++R+ ++ A L +
Sbjct: 445 A-----KAAAAHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIARAILKNAPILVL 495
Query: 348 DEISTGLDSSTTFQI---VNCFKQN 369
DE ++ LD T ++ ++ ++N
Sbjct: 496 DEATSALDVETEARVKNAIDALRKN 520
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-05
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 29/153 (18%)
Query: 885 TALMGVSGAGKTTLMDVLAG--RKTGGYIT--------GDIRISGYPKKQETFARISGYC 934
TA+ G SGAGKT+L++ ++G R G I + I P+K+ RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR----RI-GYV 81
Query: 935 EQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994
Q+ P V +L Y + F ++++ L+ ++PL L PG
Sbjct: 82 FQDARLFPHYKVRGNLRYG--------MAKSMVAQF-DKIVALLGIEPL---LDRYPG-- 127
Query: 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTI 1052
N LS Q++R+ IA L NPS+I +DE TS LD A ++ VR + T++
Sbjct: 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISIT 200
Query: 1053 HQPSIDIFEAF--DELFLMKRGGREVY 1077
H D+ EA D + +M +G VY
Sbjct: 201 H----DLSEAMEADHVIVMNKG--TVY 221
|
Length = 269 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-05
Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 16/166 (9%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGDIRISGYPKKQ 924
+ LN VS G + ++G SGAGK+TL+ ++L +G I ++ +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 925 ETFARIS-GYCEQ--NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
T AR G Q N + S TV+ ++ LP E+++ + +V EL+ L
Sbjct: 77 LTKARRQIGMIFQHFNLLSSR--TVFGNV------ALPLELDNTPKDEIKRKVTELLALV 128
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
L P + LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 129 GLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 4e-05
Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 44/183 (24%)
Query: 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE--RTAAYIS 232
V+PG LLG +GKTT L G + SG T G ++ + + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGD---TTVTSGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 233 QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEG 292
Q D +T RE L AR +GV
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGV----------------------------------PA 2044
Query: 293 EEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEIST 352
EE + ++ ++ LGL + AD + G SGG K++++T ++G + +DE +T
Sbjct: 2045 EEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 353 GLD 355
G+D
Sbjct: 2100 GMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 57/259 (22%), Positives = 97/259 (37%), Gaps = 68/259 (26%)
Query: 171 VSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTA-- 228
+S V+ G + L+GP +GK+TLL +AG L SG + + G ++ + A
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARH 70
Query: 229 -AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKA 287
AY+SQ M V ++ LT L + +K
Sbjct: 71 RAYLSQQQTPPFAMPV----------------FQYLT-LHQPDKTR-------------- 99
Query: 288 ASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV---SGG--QKKRVTTGEMMVGPA 342
A+ + ++ + D++ R V SGG Q+ R+ + V P
Sbjct: 100 ---TEAVASALN---------EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147
Query: 343 L-----ALFMDEISTGLD---SSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394
+ L +DE LD + ++++ Q G AV+ T D
Sbjct: 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-----QGIAVVMSSHDLNHTLRHADR 202
Query: 395 IILLSDGQIVYQGPRELVL 413
+ LL G+++ G R+ VL
Sbjct: 203 VWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 4e-05
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 38/160 (23%)
Query: 884 LTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHS-- 941
LT L+G SG GKTT++ ++AG +T +G I + G + + E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 942 ------PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL------KPLRQSLVG 989
P +TV+E++ + ++ P R + E + +V+L KP +
Sbjct: 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPR---VMEALRMVQLEEFAQRKPHQ----- 144
Query: 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 145 ------LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 53/255 (20%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG---HNMDEFV 223
ILKD+S + G + ++GP +GK+TL+ + +DP+ G + +G +D
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
R + Q H+ E TV++ + + +G
Sbjct: 75 LRRKIGMVFQQP-HLFEGTVKDNIEYGPMLKG---------------------------- 105
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
E NV +YYL ++GL+ T + SGG+ +RV+ +
Sbjct: 106 ----------EKNVDVEYYLSIVGLNKEYATRDVKNL----SGGEAQRVSIARTLANNPE 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403
L +DE ++ LD ++T +I+ + VI + + + D L+ G +
Sbjct: 152 VLLLDEPTSALDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL 210
Query: 404 VYQGPRELVLEFFES 418
V +FF +
Sbjct: 211 VEYAK---TYDFFTN 222
|
Length = 241 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 55/206 (26%)
Query: 857 QQMKLQGVPEDKLVLLNGVS---GAFRP----------GVLTALMGVSGAGKTTLM---- 899
+ + ++ ++ L V+ G F G +TAL+G SG GK+T++
Sbjct: 1 SIKTNKKISKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLN 60
Query: 900 ---DVLAGRKTGGYITGDIRISGYPKK---QETFARISGYCEQNDIHSPF-VTVYESLFY 952
D++ G G + D Y + E RI +Q + PF ++YE++ +
Sbjct: 61 RMNDLIEGCSLKGRVLFD-GTDLYDPRVDPVEVRRRIGMVFQQPN---PFPKSIYENIAF 116
Query: 953 SAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV-----------GLPGVNGLSTEQR 1001
A +N T M ELVE + LR++ V G LS Q+
Sbjct: 117 GA------RINGYTGDM-----DELVE-RSLRKAAVWDECKDKLNESG----YSLSGGQQ 160
Query: 1002 KRLTIAVELVANPSIIFMDEPTSGLD 1027
+RL IA + P +I MDEP S LD
Sbjct: 161 QRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 54/187 (28%), Positives = 80/187 (42%), Gaps = 36/187 (19%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGDIRISGYPKKQE--- 925
L GVS +TAL+G SG GK+T + L R I G + + G Q+
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 926 --TFARISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFI---------EE 973
+ G Q+ +PF ++ E++ Y P + + + +
Sbjct: 121 LVELRKRVGMVFQSP--NPFPKSIRENISYG------PRKHGDINTGLLARLLGRDDKDA 172
Query: 974 VMELVELKPLRQSLVGLPGVN--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025
ELVE + LRQ+ + VN GLS Q++RL IA L +P +I MDEP S
Sbjct: 173 EDELVE-RSLRQAAL-WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASA 230
Query: 1026 LDARAAA 1032
LD A +
Sbjct: 231 LDPIATS 237
|
Length = 305 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 33/162 (20%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFA 928
+L+ VS +PG + L+G +GAGK+TL+ V+ G G I K+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 929 RISGYCEQN---DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
RI GY Q D P +TV + +LRL P +K I ++ V+
Sbjct: 68 RI-GYVPQKLYLDTTLP-LTV------NRFLRLRPGT----KKEDILPALKRVQ----AG 111
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
L+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 112 HLIDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 37/205 (18%)
Query: 855 MPQQMKLQGVP-EDKLVLLNGVSGAFRPGVLTALMGVSGAGKT----TLMDVL-AG-RKT 907
MPQQ++L+ + + L++GVS + G + AL+G SG+GK+ + +L AG R+T
Sbjct: 1 MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 908 GGYITGD-IRISGYPKKQETFARI-----SGYCEQNDIHSPFVTVYESLFYSAWLRLPPE 961
G + D ++ + A I S + N +H+ E+ L P +
Sbjct: 61 AGRVLLDGKPVAPCALRGRKIATIMQNPRSAF---NPLHTMHTHARETC---LALGKPAD 114
Query: 962 VNSETRKMF---IEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1018
+ T + +E +++L P +S +R+ IA+ L+ I
Sbjct: 115 DATLTAALEAVGLENAARVLKLYPFE-----------MSGGMLQRMMIALALLCEAPFII 163
Query: 1019 MDEPTSGLDARAAA----IVMRTVR 1039
DEPT+ LD A A ++ V+
Sbjct: 164 ADEPTTDLDVVAQARILDLLESIVQ 188
|
Length = 254 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 16/131 (12%)
Query: 133 ASKALPSFTKFFTTIFEDLLN-YLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGK 191
SK + + ++ + L + LKD+S + G ++G +GK
Sbjct: 9 VSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFW--ALKDISFEIYKGERVGIIGHNGAGK 66
Query: 192 TTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAA 251
+TLL +AG P+ SG+V G + A I E+T RE +
Sbjct: 67 STLLKLIAGIYKPT---SGKVKVTG---------KVAPLIELGAGFDPELTGRENIYLRG 114
Query: 252 RCQGVGTRYEM 262
G+ TR E+
Sbjct: 115 LILGL-TRKEI 124
|
Length = 249 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-05
Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 38/216 (17%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L G++ PG + AL+G SG+GK+T+ +L + TGG + D G P Q
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD----GVPLVQ----- 547
Query: 930 ISGYCEQNDIHSPFVTV-YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
+ + +H V E + +S +R + EE+M + ++
Sbjct: 548 ----YDHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIM 601
Query: 989 GLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1037
P NG TE Q++R+ IA LV P ++ +DE TS LDA +
Sbjct: 602 EFP--NGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQL 655
Query: 1038 VRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
++ + RTV+ H+ S E D++ ++K+G
Sbjct: 656 LQESRSRASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 6e-05
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG 216
T LKD+S VK G LLGP GKTTLL +AG + +G + G
Sbjct: 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGG 65
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 6e-05
Identities = 42/203 (20%), Positives = 74/203 (36%), Gaps = 60/203 (29%)
Query: 156 HILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYN 215
++ +LKD+S + G ++GP +GK+TLL LAG+L P +SG V
Sbjct: 326 NVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP---LSGTVKV- 381
Query: 216 GHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275
G + Y QH + + +T+
Sbjct: 382 GETVK-------IGYFDQHRDELDPD---KTV---------------------------- 403
Query: 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV---SGGQKKRV 332
++ + E+ + YL G G++ + V SGG+K R+
Sbjct: 404 -----LEELSEGFPDGDEQ--EVRA-YLGRFGFT-------GEDQEKPVGVLSGGEKARL 448
Query: 333 TTGEMMVGPALALFMDEISTGLD 355
++++ P L +DE + LD
Sbjct: 449 LLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 6e-05
Identities = 45/197 (22%), Positives = 74/197 (37%), Gaps = 48/197 (24%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
+LK + VK G + +++GP SGK+TLL + +P SG + +G + +
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKK 69
Query: 225 E-----RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
+ + Q N +TV E + A ++ KA
Sbjct: 70 NINELRQKVGMVFQQFNLFPHLTVLENITLA------------PIKVKGMSKA------- 110
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE-MM 338
EA L+ +GL AD +SGGQ++RV +
Sbjct: 111 --------------EAEERALELLEKVGLADKADAYPAQ-----LSGGQQQRVAIARALA 151
Query: 339 VGPALALFMDEISTGLD 355
+ P + LF DE ++ LD
Sbjct: 152 MNPKVMLF-DEPTSALD 167
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 6e-05
Identities = 53/240 (22%), Positives = 95/240 (39%), Gaps = 38/240 (15%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDI--RIS----- 918
+ K VL N +S G + ++G SGAGK+ LM VL G +G I ++
Sbjct: 11 DGKEVLKN-ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKC 69
Query: 919 GYPKKQETFARISGYCEQN--DIHSPFVTVYESLFYSAWLRLP----------------- 959
GY ++ C F + + L R+
Sbjct: 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLD 129
Query: 960 ------PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVAN 1013
E+ E ++ + ++L+E+ L + + LS +++R+ +A +L
Sbjct: 130 NVLEALEEIGYEGKEA-VGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKE 186
Query: 1014 PSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
P + DEPT LD + A +V + V +G ++V T H P + I + D+ ++ G
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLENG 245
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 6e-05
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 35/198 (17%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYP-KKQ-E 925
+L +G+S G L + G +GAGKT+L+ +LAG R G++ G P ++Q +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD----AGEVLWQGEPIRRQRD 70
Query: 926 TFARISGYC-EQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
+ + Y Q I +T E+L + RL + E L
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENL--RFYQRLHGPGDDEA----------------LW 111
Query: 985 QSL--VGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1037
++L VGL G V LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
Query: 1038 VRNTVDTGRTVVCTIHQP 1055
+ + G V+ T HQ
Sbjct: 172 LAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 6e-05
Identities = 46/187 (24%), Positives = 70/187 (37%), Gaps = 58/187 (31%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGDIRISGYPKKQETFA 928
+ G+ F +TAL+G SG+GK+T + L +TG I G
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI-------- 87
Query: 929 RISGYCEQNDIHSPFVTVYE-----------------SLFYSAWLRLPPEVNSETRKMFI 971
DI+ + VYE S++ + L E K +
Sbjct: 88 ---------DINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFAL--ERAGVKDKKVL 136
Query: 972 EEVMELVELKPLRQSLV-----------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020
+E++E L+Q+ + L LS Q++RL IA + P I+ MD
Sbjct: 137 DEIVE----TSLKQAALWDQVKDDLHKSAL----TLSGGQQQRLCIARAIAVKPDILLMD 188
Query: 1021 EPTSGLD 1027
EP S LD
Sbjct: 189 EPASALD 195
|
Length = 267 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 6e-05
Identities = 51/208 (24%), Positives = 80/208 (38%), Gaps = 34/208 (16%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGR---KTGGYITGDIRI 917
+L +L VS G AL G SGAGK+TL+ L +GR + G +
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 918 SG----YPKKQETFARISGYCEQNDIHSPFVT----VYESLFYSAWLRLPPEVNSETRKM 969
S +++ GY Q P V+ V E L P E
Sbjct: 80 SPREVLEVRRKTI-----GYVSQFLRVIPRVSALEVVAEPLLERGV---PREAARA---- 127
Query: 970 FIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
EL+ + + L LP S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 128 ---RARELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183
Query: 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSI 1057
+V+ + G ++ H +
Sbjct: 184 NRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 58/234 (24%)
Query: 849 VVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 908
V Y+ D+P +L VS + G ++G +GAGK+TL +LA +
Sbjct: 14 VRYAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFL 58
Query: 909 GYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESL--------FYSAWLRLPP 960
G I I G + P + SL +S +R
Sbjct: 59 EAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
Query: 961 EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020
+ E I + + E G LS QR+ L +A L+ P ++ +D
Sbjct: 103 DPFDEYSDEEIYGALRVSE------------GGLNLSQGQRQLLCLARALLKRPRVLVLD 150
Query: 1021 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH--QPSIDIFEAFDELFLMKRG 1072
E T+ +D A++ +T+R T T++ H + ID +D++ +M G
Sbjct: 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID----YDKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 62/277 (22%), Positives = 113/277 (40%), Gaps = 44/277 (15%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTL---LLALAGKLDPSLKVSGRVTYNGHNMDE 221
LT+L ++ V G L+GP SGK+T+ L+ L + ++V G Y+
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYH------ 66
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
+P R + + H+ +M +G ++ + + P +
Sbjct: 67 -MPGRNGPLVPADEKHLRQMR-----------NKIGMVFQSFNLFPHKTVLDNVTEAPVL 114
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE-MMVG 340
+ M A E + L ++GL AD D M +SGGQ++RV + +
Sbjct: 115 VLGMARAEAEKRAMEL-----LDMVGL---ADKA--DHMPAQLSGGQQQRVAIARALAMR 164
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400
P + LF DE+++ LD +++N ++ + T ++ + D +
Sbjct: 165 PKVMLF-DEVTSALDPELVGEVLNVIRRLASEHDLTMLL-VTHEMGFAREFADRVCFFDK 222
Query: 401 GQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
G+IV QG P E+ F+ PK + +FL +V
Sbjct: 223 GRIVEQGKPDEI---------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 7e-05
Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 45/227 (19%)
Query: 872 LNGVSGAFRPG--VLT------------ALMGVSGAGKTTLMDVLAGRKTGGYIT---GD 914
++ VS A+R VL AL+G +G+GK+TL +L G Y G+
Sbjct: 343 IDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG-----YYPLTEGE 397
Query: 915 IRISGYPKKQETFA--RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIE 972
IR+ G P + + R Q D P V + ++ A + L ++ SE + +
Sbjct: 398 IRLDGRPLSSLSHSVLRQGVAMVQQD---P-VVLADTFL--ANVTLGRDI-SEEQ---VW 447
Query: 973 EVMELVELKPLRQSL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025
+ +E V+L L +SL +G G N LS Q++ L +A LV P I+ +DE T+
Sbjct: 448 QALETVQLAELARSLPDGLYTPLGEQG-NNLSVGQKQLLALARVLVQTPQILILDEATAN 506
Query: 1026 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+D+ + + + V T+V H+ S I EA D + ++ RG
Sbjct: 507 IDSGTEQAIQQALA-AVREHTTLVVIAHRLST-IVEA-DTILVLHRG 550
|
Length = 592 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 8e-05
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
L+IL V +VK G L+G SGK+TLL LAG D S SG V+ G + +
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDE 79
Query: 225 ERTAAYISQH 234
E A ++H
Sbjct: 80 EARAKLRAKH 89
|
Length = 228 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 8e-05
Identities = 59/248 (23%), Positives = 100/248 (40%), Gaps = 55/248 (22%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-- 225
L ++ V+PG L+GP +GK+TL L DP SGR+ +G ++ + P
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAEL 412
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
R + D + +V E + + +PD
Sbjct: 413 RARMALVPQDPVLFAASVMENIRYG-------------------------RPD------- 440
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTGEMMVGPAL 343
A E E A + + L DT +G+ RGV SGGQ++R+ ++ A
Sbjct: 441 -ATDEEVEAAARAAHAHEFISALPEGYDTYLGE---RGVTLSGGQRQRIAIARAILKDAP 496
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI----SLLQPAPETYNLFDDIILLS 399
L +DE ++ LD+ + Q+V + + T +I + + A D I+++
Sbjct: 497 ILLLDEATSALDAESE-QLVQQALETLMKGRTTLIIAHRLATVLKA-------DRIVVMD 548
Query: 400 DGQIVYQG 407
G+IV QG
Sbjct: 549 QGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 8e-05
Identities = 37/204 (18%), Positives = 59/204 (28%), Gaps = 69/204 (33%)
Query: 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIH 940
PG + ++G G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 941 SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000
E + + L Q L+ + G S
Sbjct: 39 -----------------------------------EDILEEVLDQLLLIIVGGKKASGSG 63
Query: 1001 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTI 1052
RL +A+ L P ++ +DE TS LDA A+++ + TV+ T
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
Query: 1053 HQPSI----DIFEAFDELFLMKRG 1072
+ + FD ++
Sbjct: 124 NDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-05
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1053
+ LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 1054 QPSI 1057
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 25/156 (16%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR--ISGYCEQN 937
G A++G SGAGK+TL++++AG T +G + ++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 938 DIHSPFVTVYE--SLFYSAWLRLPPE----VNSETRKMFIEEVMELVELKPLRQSLVGLP 991
++ +TV + L + L+L +++ R+M IE+++ R LP
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-------R-----LP 127
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
G LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 128 G--QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 9e-05
Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 44/202 (21%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPSLKVSGRVTYNGHNM-----D 220
+K+V + G++T L+GP GK+T+L +L L + GRV ++G ++ D
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
R + Q N + ++ E +AF AR G + L E S R+ A
Sbjct: 89 PVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAV------- 140
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
D C D + +E +SGGQ++R+ +
Sbjct: 141 ---------------------------WDECKDKL--NESGYSLSGGQQQRLCIARTIAI 171
Query: 341 PALALFMDEISTGLDSSTTFQI 362
+ MDE + LD +T +I
Sbjct: 172 EPEVILMDEPCSALDPISTLKI 193
|
Length = 269 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 995 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1050
LS +++ +A+ L + + +DE GLD R + + + G V+
Sbjct: 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV 136
Query: 1051 TIHQPSIDIFEAFDELFLMKRGGREVY 1077
H P ++ E D+L +K+ VY
Sbjct: 137 ITHLP--ELAELADKLIHIKKVITGVY 161
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 9e-05
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGD-IRISGYPKKQETFARIS 931
VS G + AL+G SG GK+TL+ +LAG + T G I D + +S P Q R
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RPI 93
Query: 932 GYCEQNDIHSPFVTVYESL-FYSAWLRLPP-EVNSETRKMF-IEEVMELVELKPLRQSLV 988
Q+ P +TV +++ F +LP E+ S +M + + E + KP
Sbjct: 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP------ 147
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
+ LS QR+R+ +A L P ++ +DEP LD +
Sbjct: 148 -----HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKK 183
|
Length = 377 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 63/248 (25%), Positives = 96/248 (38%), Gaps = 41/248 (16%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
+L +++ +KPG ++GP SGK+TL L P G+V +G ++ P
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH---GQVLVDGVDLAIADP-- 526
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
A+ R GV + +L S R+ A P + +
Sbjct: 527 ---------------------AWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIH 565
Query: 287 AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALF 346
AA G + L +T VG E +SGGQ++R+ +VG L
Sbjct: 566 AAKLAGAHDFIS--------ELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRILI 616
Query: 347 MDEISTGLDSSTTFQIVNCFKQNIH-INSGTAVISLLQPAPETYNLFDDIILLSDGQIVY 405
DE ++ LD + I+ N+ I G VI + T D II+L GQI
Sbjct: 617 FDEATSALDYESEALIMR----NMREICRGRTVIIIAHRL-STVRACDRIIVLEKGQIAE 671
Query: 406 QGPRELVL 413
G E +L
Sbjct: 672 SGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 65/259 (25%), Positives = 104/259 (40%), Gaps = 59/259 (22%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG---HNMDEF 222
T+L V V+ G L L+GP +GKTTLL A+ G L P+ +G V G +
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSAR 73
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
R A + Q + E VR+ + E+ R P
Sbjct: 74 AASRRVASVPQDTSLSFEFDVRQVV-----------------EMGRT---------PHRS 107
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
F TE + A V + ++ G+ AD V +SGG+++RV ++ A
Sbjct: 108 RF--DTWTETDRAAV--ERAMERTGVAQFADRPVTS-----LSGGERQRV-----LLARA 153
Query: 343 LA-----LFMDEISTGLD---SSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394
LA L +DE + LD T ++V ++ G ++ + D+
Sbjct: 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRL-----VDDGKTAVAAIHDLDLAARYCDE 208
Query: 395 IILLSDGQIVYQGPRELVL 413
++LL+DG++ GP VL
Sbjct: 209 LVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 54/264 (20%), Positives = 99/264 (37%), Gaps = 55/264 (20%)
Query: 156 HILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYN 215
L K+ +L +VS ++ G LLG GK+TL L G P+ G V++
Sbjct: 15 GGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFR 71
Query: 216 GHNMDEFVPE------RTAAYISQHDNHIG----EMTVRETLAFAARCQGVGTRYEMLTE 265
G ++ + + R + Q + MTVR+ + R L E
Sbjct: 72 GQDLYQLDRKQRRAFRRDVQLVFQ--DSPSAVNPRMTVRQIIGEPLR------HLTSLDE 123
Query: 266 LSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325
++ + A + L ++GL ++ D++ R +S
Sbjct: 124 SEQKARIAEL---------------------------LDMVGLR--SEDA--DKLPRQLS 152
Query: 326 GGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQP 384
GGQ +R+ + V P L + +DE + LD I+ ++ + GTA + +
Sbjct: 153 GGQLQRINIARALAVKPKL-IVLDEAVSNLDMVLQAVILELLRK-LQQAFGTAYLFITHD 210
Query: 385 APETYNLFDDIILLSDGQIVYQGP 408
+ + ++ GQIV +
Sbjct: 211 LRLVQSFCQRVAVMDKGQIVEECD 234
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 23/177 (12%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV---LAGRKTGGYITGDIRISGYPKKQET 926
+L +S F G + ++G SGAGK+TL+ + L G + + I
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVID-- 74
Query: 927 FARISGYCEQNDIHSPFV---TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
R G Q P + TV +++ Y L+ V+ +E + +V L
Sbjct: 75 LRRKIGMVFQQ----PHLFEGTVKDNIEYGPMLKGEKNVD-------VEYYLSIVGL--- 120
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
V LS + +R++IA L NP ++ +DEPTS LD + I+ +
Sbjct: 121 -NKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 1e-04
Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 961 EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020
EV ++K+ I + + + K ++LVG + LS Q++R++IA ++ NP I+ +D
Sbjct: 548 EVVDVSKKVLIHDFVSALPDK--YETLVG-SNASKLSGGQKQRISIARAIIRNPKILILD 604
Query: 1021 EPTSGLDARAAAIVMRTVRN 1040
E TS LD ++ +V +T+ N
Sbjct: 605 EATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 14/208 (6%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGDIRISGYPKKQETFA 928
LN S F+ +T ++G +G+GK+T++ + G +TG I GD I KK +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAW---LRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
R+ + +I F LF + P E ++ ++V EL++L L +
Sbjct: 87 RL-----RKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE 141
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDT 1044
V LS Q++R+ +A + + + + +DEPT GLD + + R +
Sbjct: 142 DYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY 200
Query: 1045 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ ++ H + DE+ +M G
Sbjct: 201 KKRIIMVTHNMD-QVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 52/208 (25%), Positives = 78/208 (37%), Gaps = 43/208 (20%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
L D+S V PG L +L+GP +GKTTL+ + GK P G V ++G D
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGD-TD------- 69
Query: 228 AAYISQHDNH-IGEMTVRETLAFAARCQGVG------TRYEMLTELSRREKAAGIKPDPD 280
+++ H I G+G T +E LT E A
Sbjct: 70 ---LTKLPEHRIARA-------------GIGRKFQKPTVFENLTVRENLELALNRDKSVF 113
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
+F + EE I D L +GL D + +S GQK+ + G ++
Sbjct: 114 ASLFARL---RAEERRRI-DELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQ 164
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQ 368
L +DE G+ + T + K
Sbjct: 165 DPKLLLLDEPVAGMTDAETEKTAELLKS 192
|
Length = 249 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 61/251 (24%), Positives = 102/251 (40%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T+L +S G++T L+G SGK+TLL L PS G + + ++ + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSK 81
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
R AY+ Q MTVRE +A RY L R
Sbjct: 82 AFARKVAYLPQQLPAAEGMTVRELVAIG--------RYPWHGALGR-------------- 119
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
F A + EEA + ++GL A +V +SGG+++R ++ +
Sbjct: 120 -FGAADREKVEEA-------ISLVGLKPLAHRLVDS-----LSGGERQRAWIAMLVAQDS 166
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
L +DE ++ LD + ++ + G VI++L D ++ L G+
Sbjct: 167 RCLLLDEPTSALDIAHQVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGE 225
Query: 403 IVYQG-PRELV 412
++ QG P EL+
Sbjct: 226 MIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 57/252 (22%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
++++ S ++PG+ L+G SGK+T+ +AG P SG + ++G +E E
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREV 550
Query: 227 TAAYISQHDNHIG--EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
A ++ D I E TVR+ L T + +L R K A I DV
Sbjct: 551 LANSVAMVDQDIFLFEGTVRDNLTLWDP-----TIPD--ADLVRACKDAAIH-----DVI 598
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG-PAL 343
+ G +A + E +SGGQ++R+ +V P++
Sbjct: 599 T--SRPGGYDAELA--------------------EGGANLSGGQRQRLEIARALVRNPSI 636
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI-----SLLQPAPETYNLFDDIILL 398
L +DE ++ LD T I N+ T +I S ++ D+II+L
Sbjct: 637 -LILDEATSALDPETEKIID----DNLRRRGCTCIIVAHRLSTIRDC-------DEIIVL 684
Query: 399 SDGQIVYQGPRE 410
G++V +G E
Sbjct: 685 ERGKVVQRGTHE 696
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 57/259 (22%), Positives = 102/259 (39%), Gaps = 66/259 (25%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
L +S + G ++G +GK+TLL A+AG L P+ SG++ +G ++ +
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVA 76
Query: 226 RTAAYISQ-----HDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ A +++ E+T+ E LA A G + + + L+ R +
Sbjct: 77 KRANLLARVFQDPLAGTAPELTIEENLALAES---RGKKRGLSSALNERRR--------- 124
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
F + + G LGL+ +G +SGGQ++ ++ +
Sbjct: 125 -SSFRERLARLG-------------LGLENRLSDRIGL-----LSGGQRQALSLLMATLH 165
Query: 341 PALALFMDEISTGLDSST-------TFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393
P L +DE + LD T T +IV K T ++ T+N+ D
Sbjct: 166 PPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL-------TTLMV-------THNMED 211
Query: 394 DI------ILLSDGQIVYQ 406
+ I+L G+IV
Sbjct: 212 ALDYGNRLIMLHSGKIVLD 230
|
Length = 263 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 62/253 (24%), Positives = 96/253 (37%), Gaps = 54/253 (21%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP---SLKVSGRVTYNGHNMDEFVP 224
LK +S + G T LLGP +GK+TLLL L G P +KV GR N N V
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV-NAENEKW-VR 78
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
+ D+ + TV + +AF G+ E+ RR + A
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-----EVERRVEEA----------- 122
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT-TGEMMVGPAL 343
LK + + D+ +S GQKKRV G + + P +
Sbjct: 123 ------------------LKAVRMWDFR-----DKPPYHLSYGQKKRVAIAGVLAMDPDV 159
Query: 344 ALFMDEISTGLDSS---TTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400
+ +DE LD T +I++ G VI D +I+L +
Sbjct: 160 -IVLDEPMAYLDPRGQETLMEILDRLHNQ-----GKTVIVATHDVDLAAEWADQVIVLKE 213
Query: 401 GQIVYQGPRELVL 413
G+++ +G + L+
Sbjct: 214 GRVLAEGDKSLLT 226
|
Length = 274 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 60/277 (21%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-- 225
+ D S V+ G + +++G SGK+TL+ L ++P+ G + +G ++ +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAEL 100
Query: 226 -----RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ + + Q + TV E +AF QGV + R E+A
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP-------KAEREERALEA----- 148
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
L+++GL+ AD + +SGG ++RV +
Sbjct: 149 ----------------------LELVGLEGYADKYPNE-----LSGGMQQRVGLARALAN 181
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400
L MDE + LD ++ + + + ++ + E + D I ++ D
Sbjct: 182 DPDILLMDEAFSALDPLIRTEMQDELLE-LQAKLKKTIVFITHDLDEALRIGDRIAIMKD 240
Query: 401 GQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
G+IV G P E++L P V DF++ V
Sbjct: 241 GEIVQVGTPEEILLN---------PANDYVRDFVRNV 268
|
Length = 386 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG---YPKKQETF 927
+L G++ + G + A+MG +G+GK+TL V+AG + GDI G + E
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 928 ARISGYCE-QNDIHSPFVTVYESLFYSAWLRLP----------PEVNSETRKMFIEEVME 976
A + + Q I P V+ + +LRL PE++ I E ++
Sbjct: 82 AHLGIFLAFQYPIEIPGVS------NADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLK 135
Query: 977 LVELKP--LRQSLVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1033
LV + P L ++ VN G S ++KR I + + + +DE SGLD A I
Sbjct: 136 LVGMDPSFLSRN------VNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKI 189
Query: 1034 VMRTVRNTVDTGRTVVCTIH 1053
+ + + + +++ H
Sbjct: 190 IAEGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 69/293 (23%), Positives = 117/293 (39%), Gaps = 55/293 (18%)
Query: 161 TKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP---SLKVSGRVTYNGH 217
LK+VS + G +LG SGK+T+ L G L P +K+ G +T +
Sbjct: 18 PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDG-ITISKE 76
Query: 218 NMDEFVPERTAAYISQH-DNH-IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275
N+ E + I Q+ DN IG TV + +AF G + + +K
Sbjct: 77 NLKEI--RKKIGIIFQNPDNQFIG-ATVEDDIAF-------GLENKKVP----PKK---- 118
Query: 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG 335
MK +I D KV D D+ + +SGGQK+RV
Sbjct: 119 ---------MKD---------IIDDLAKKVGMEDYL------DKEPQNLSGGQKQRVAIA 154
Query: 336 EMM-VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394
++ + P + +F DE ++ LD +I + +IS+ E D
Sbjct: 155 SVLALNPEIIIF-DESTSMLDPKGKREIKKIMVD-LRKTRKKTLISITHDMDEAILA-DK 211
Query: 395 IILLSDGQIVYQGPRELVL---EFFESMGFKCPKRKGVADFLQEVTSKKDQEQ 444
+I+ S+G+++ QG + +L E E P ++ L+ + ++E+
Sbjct: 212 VIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSKKLKGIDPTYNEEE 264
|
Length = 271 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-04
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM----DEFVPERTAAY 230
+ G L + GP +GKT+LL LAG P +G V + G + DE+ + Y
Sbjct: 24 LNAGELVQIEGPNGAGKTSLLRILAGLARP---DAGEVLWQGEPIRRQRDEY--HQDLLY 78
Query: 231 ISQHDNHI-GEMTVRETLAFAARCQGVGTRYEMLTELSR 268
+ H I E+T E L F R G G + L++
Sbjct: 79 LG-HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ 116
|
Length = 204 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 2e-04
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 30/166 (18%)
Query: 884 LTALMGVSGAGKTTLM-------DVLAGRKTGG--YITGDIRISGYPKKQETFARISGYC 934
+TA +G SG GK+T + D++ G G Y G S E RI
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 935 EQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGL--- 990
++ +PF +++++++ Y P N + +E+++E K L+ + +
Sbjct: 170 QKP---TPFEMSIFDNVAYG------PRNNGINDRKILEKIVE----KSLKSAALWDEVK 216
Query: 991 ----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
N LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 217 DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 18/109 (16%), Positives = 37/109 (33%)
Query: 1276 IPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPTHHIAS 1335
+ + V + I+ + + L + G ++ A
Sbjct: 145 LGDLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAI 204
Query: 1336 IVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIASQYG 1384
+V ++ L F G + P P +P + +W + P + GL+ YG
Sbjct: 205 LVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYG 253
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 2e-04
Identities = 67/278 (24%), Positives = 107/278 (38%), Gaps = 60/278 (21%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
L D++ + G L ++G GKT+L+ A+ G+L + S V G +
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS--VVIRG----------S 680
Query: 228 AAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP-DPDIDVFMK 286
AY+ Q + I TVRE + F G+ +E R +A + D+D+
Sbjct: 681 VAYVPQV-SWIFNATVRENILF-------GSDFES----ERYWRAIDVTALQHDLDLLPG 728
Query: 287 AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALF 346
TE E V +SGGQK+RV+ + +
Sbjct: 729 RDLTEIGERGV-------------------------NISGGQKQRVSMARAVYSNSDIYI 763
Query: 347 MDEISTGLDSSTTFQIVN-CFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVY 405
D+ + LD+ Q+ + C K + + V + L P L D IIL+S+G I
Sbjct: 764 FDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP----LMDRIILVSEGMIKE 819
Query: 406 QGPRELVLEFFESMGF--KCPKRKGVADFLQEVTSKKD 441
+G E +S K + G D QEV + +
Sbjct: 820 EGTFA---ELSKSGSLFKKLMENAGKMDATQEVNTNDE 854
|
Length = 1495 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 18/177 (10%)
Query: 887 LMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY---------PKKQETFARISGYCEQN 937
L+G SGAGK++L+ VL + +G + I+G K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 938 DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997
P +TV ++L + P V ++ + +L+E L+ P LS
Sbjct: 91 YNLWPHLTVQQNL-----IEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP--LHLS 143
Query: 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1054
Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V H+
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 34/163 (20%)
Query: 884 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGD-IRISGYPKKQETFARISGYCE 935
+TAL+G SG GK+T + D++ G + G+I D + I + G
Sbjct: 31 VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVF 90
Query: 936 QNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMEL----------VELKPLR 984
Q +PF ++++++ Y LR ++ E + FIEE +E V+ K +
Sbjct: 91 QKP--NPFPKSIFDNVAYG--LR----IHGEDDEDFIEERVEESLKAAALWDEVKDKLDK 142
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
+L GLS Q++RL IA + +P +I MDEP S LD
Sbjct: 143 SAL-------GLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 51/255 (20%), Positives = 98/255 (38%), Gaps = 55/255 (21%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
++ VS VK G + LLGP +GKTT + G + P SG++ +G ++ +
Sbjct: 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMH 70
Query: 226 RTA----AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
+ A Y+ Q + ++TV E + + LS++E+
Sbjct: 71 KRARLGIGYLPQEASIFRKLTVEENILAVLE----------IRGLSKKEREE-------- 112
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV-G 340
+ L+ + + +SGG+++RV +
Sbjct: 113 ----------------KLEELLEEFHITHLRKSKAS-----SLSGGERRRVEIARALATN 151
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHI--NSGTAVISLLQPAPETYNLFDDIILL 398
P L +DE G+D I ++ I I + G V+ ET ++ D ++
Sbjct: 152 PKF-LLLDEPFAGVDPIAVQDI----QKIIKILKDRGIGVLITDHNVRETLSITDRAYII 206
Query: 399 SDGQIVYQG-PRELV 412
+G+++ +G P E+
Sbjct: 207 YEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 50/191 (26%), Positives = 78/191 (40%), Gaps = 48/191 (25%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
L D+S V PG L +++GP +GKTT++ + GK P G V + G +
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTD--------- 65
Query: 228 AAYISQHDNH-IGEMTVRETLAFAARCQGVG------TRYEMLTELSRREKAAGIKPDPD 280
++ H I G+G T +E LT E A
Sbjct: 66 ---LTGLPEHQIARA-------------GIGRKFQKPTVFENLTVFENLELALPRDKSVF 109
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
+F + + EE + I + L+ +GL AD + G +S GQK+ + G M++
Sbjct: 110 ASLFFRLS---AEEKDRI-EEVLETIGLADEADRLAGL-----LSHGQKQWLEIG-MLLM 159
Query: 341 --PALALFMDE 349
P L L +DE
Sbjct: 160 QDPKL-LLLDE 169
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 57/252 (22%)
Query: 161 TKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMD 220
T+ +L+DVS + PG +T L+GP SGK+T++ L P G+V +G +
Sbjct: 23 TRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPIS 79
Query: 221 EFVPE---RTAAYISQHDNHIGEMTVRETLAFAARCQGVGT-RYEMLTELSRREKAAGIK 276
++ + + + Q ++++ +A+ G+ + +E + E +++ A
Sbjct: 80 QYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAY-----GLQSCSFECVKEAAQKAHAHSF- 132
Query: 277 PDPDIDVFMKAASTE-GEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG 335
I TE GE+ + + SGGQK+RV
Sbjct: 133 ----ISELASGYDTEVGEKGSQL--------------------------SGGQKQRVAIA 162
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI----SLLQPAPETYNL 391
++ L +DE ++ LD+ + Q V + VI S ++ A
Sbjct: 163 RALIRNPQVLILDEATSALDAESE-QQVQQALYDWPERRTVLVIAHRLSTVERA------ 215
Query: 392 FDDIILLSDGQI 403
D I++L G+I
Sbjct: 216 -DQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 43/203 (21%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTYNGHNM-----D 220
+KDVS +T ++GP GK+T+L ++ D PS +V+G++ + ++ D
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
R + Q N M++ + + + G R
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNR--------------------- 118
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGL-DICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
EA+ I + LK + L D D + + M +SGGQ++R+ +
Sbjct: 119 ------------SEADEIVESSLKRVALWDEVKDRLKSNAME--LSGGQQQRLCIARTIA 164
Query: 340 GPALALFMDEISTGLDSSTTFQI 362
+ MDE ++ LD +T +I
Sbjct: 165 VKPEVILMDEPASALDPISTLKI 187
|
Length = 252 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 29/166 (17%)
Query: 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFARISGY 933
G G + ++G +G GKTT + +LAG + G D+++S Y K Q G
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE-DLKVS-Y-KPQYISPDYDG- 416
Query: 934 CEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGV 993
TV + L + S F E+++ + L+ L + V
Sbjct: 417 -----------TVEDLL----RSAIRSAFGSS---YFKTEIVKPLNLEDLLERPV----- 453
Query: 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
+ LS + +R+ IA L + +DEP++ LD IV + +R
Sbjct: 454 DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 24/202 (11%)
Query: 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GGYITGDIRISGY------ 920
L +L+G++ + G AL+G SG+GK+T++ +L + G I + +
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNG 72
Query: 921 ---PKKQETFARIS---GYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEE 973
P ++ ++ G Q+ P TV +++ + L L +E R
Sbjct: 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKR------ 126
Query: 974 VMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1033
MEL+++ L +P LS Q++R+ IA L P ++ DE TS LD
Sbjct: 127 AMELLDMVGLADKADHMPA--QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE 184
Query: 1034 VMRTVRN-TVDTGRTVVCTIHQ 1054
V+ +R + T++ H+
Sbjct: 185 VLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 30/219 (13%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK--KQ 924
D +L GVS +TA++G SG GK+T + L + ++R+ G + Q
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 925 ETFAR---ISGYCEQNDIHSPF-----VTVYESLFYSAWL-RLPPEVNSETRKMFIEEVM 975
+ R ++ Q + P ++VY+++ Y + P++ + +E +
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD---IVESAL 131
Query: 976 ELVEL-----KPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
+ +L + +S + L G Q++RL IA L P ++ MDEP GLD A
Sbjct: 132 KDADLWDEIKHKIHKSALDLSG------GQQQRLCIARALAVKPKVLLMDEPCFGLDPIA 185
Query: 1031 AAIVMRTVRN-TVDTGRTVVCTIHQ-PSIDIFEAFDELF 1067
+ V +++ + + T+V H + F F
Sbjct: 186 SMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFF 224
|
Length = 261 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 52/226 (23%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGDIRISGYPKKQETFA 928
L V+ G TA +G +G+GK+T+M +L G G D I+ K +
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK---- 78
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP------ 982
DI V L + PE ++F E V++ V P
Sbjct: 79 ---------DIKQIRKKV--GLVFQF-----PE-----SQLFEETVLKDVAFGPQNFGVS 117
Query: 983 -------LRQSLVGLPGVNG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026
R+ L L G++ LS Q +R+ IA L P I+ +DEPT+GL
Sbjct: 118 QEEAEALAREKLA-LVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGL 176
Query: 1027 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
D + +M + +G T+V H D+ D ++++++G
Sbjct: 177 DPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKG 221
|
Length = 280 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 16/188 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGDIRISGYPKKQETFA 928
L GV+ RPG + L G SGAGK+TL+ ++ G R + G I I+ ++ F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 929 RIS-GYCEQNDIHSPFV--TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
R G Q+ H + TVY++ + +P + + V ++ L
Sbjct: 78 RRQIGMIFQD--HHLLMDRTVYDN------VAIPLIIAGASGDDIRRRVSAALDKVGLLD 129
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
P LS +++R+ IA +V P+++ DEPT LD + ++R G
Sbjct: 130 KAKNFP--IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 1046 RTVVCTIH 1053
TV+ H
Sbjct: 188 VTVLMATH 195
|
Length = 222 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 316 VGDEMRRGVSGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINS 374
V + + G+SGGQ++RV + + P + L +DE ++ LD T ++ K +
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDV-LLLDEPTSALDPITRREVRALLKS-LQAQL 150
Query: 375 GTAVISLLQPAPETYNLFDDIILLSDGQ 402
G V+ + E L D +++L DG+
Sbjct: 151 GITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 162 KKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM 219
K +LK VS + G + ++G SGK+TLL L G +P+ SG V +NG ++
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSL 69
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 58/256 (22%), Positives = 105/256 (41%), Gaps = 47/256 (18%)
Query: 169 KDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-VPE-- 225
+DVS + PG + ++G SGK+TLL LAG+L P + + +G ++ + + E
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 226 -----RTA-AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
RT ++ Q+ M V R +G R+ A
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH-----YGNIRATAQ----- 129
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
D+ +V +I + D++ R SGG ++R+ +V
Sbjct: 130 --------------------DWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIARNLV 164
Query: 340 -GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398
P L +FMDE + GLD S ++++ + + + G AVI + L ++++
Sbjct: 165 TRPRL-VFMDEPTGGLDVSVQARLLDLLRGLV-RDLGLAVIIVTHDLGVARLLAQRLLVM 222
Query: 399 SDGQIVYQGPRELVLE 414
G++V G + VL+
Sbjct: 223 QQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 4e-04
Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 31/160 (19%)
Query: 882 GVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGDIRISGYPKKQETFARISGYCEQN 937
G TA++G +G GK+TL+ L+ T ++ G+ I Y K+ AR G QN
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGE-HIQHYASKE--VARRIGLLAQN 89
Query: 938 DIHSPFVTVYESL---------FYSAWLRLPPE-VNSETRKMFIEEVMELVELKPLRQSL 987
+TV E + ++ W + E V + I + QS
Sbjct: 90 ATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA--------DQS- 140
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
V+ LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 141 -----VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 4e-04
Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 22/191 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP-----KKQET 926
++ VS + R G + + G+ GAG+T L+ L G G + G++ I+G P Q
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAI 334
Query: 927 FARISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMEL------V 978
A I+ E H P + V +++ S + S KM I+ EL +
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSV-------LKSFCFKMRIDAAAELQIIGSAI 387
Query: 979 ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
+ ++ + LP + LS +++ +A L+ NP ++ +DEPT G+D A + + +
Sbjct: 388 QRLKVKTASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLI 446
Query: 1039 RNTVDTGRTVV 1049
G ++
Sbjct: 447 NQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 4e-04
Identities = 64/257 (24%), Positives = 104/257 (40%), Gaps = 72/257 (28%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
+LK +S +K G LLG GK+TLL L DP G + NG + ++ E
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADY-SEA 410
Query: 226 --RTA-AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD-- 280
R A + +SQ H+ T+R+ L A P+
Sbjct: 411 ALRQAISVVSQR-VHLFSATLRDNLLLA-------------------------APNASDE 444
Query: 281 --IDVFMK---AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG 335
I+V + E ++ GL + +G E R +SGG+++R+
Sbjct: 445 ALIEVLQQVGLEKLLEDDK------------GL----NAWLG-EGGRQLSGGEQRRLGIA 487
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL---- 391
++ A L +DE + GLD+ T QI+ + H + T ++ T+ L
Sbjct: 488 RALLHDAPLLLLDEPTEGLDAETERQILELLAE--HAQNKTVLMI-------THRLTGLE 538
Query: 392 -FDDIILLSDGQIVYQG 407
FD I ++ +GQI+ QG
Sbjct: 539 QFDRICVMDNGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1053
LS Q++RL IA + +P +I MDEP S LD A + + + + TVV H
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 44/237 (18%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924
P+ L V+ +PG + + G +G+GK+TL+ ++ ++ GDIR P +
Sbjct: 324 PQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLI--QRHFDVSEGDIRFHDIPLTK 381
Query: 925 -------ETFARISGYCEQNDIHSPFV---TVYESLFYSAWLRLPPEVNSETRKMFIEEV 974
A +S +PF+ TV ++ A R P+ + IE V
Sbjct: 382 LQLDSWRSRLAVVS--------QTPFLFSDTVANNI---ALGR--PDATQQE----IEHV 424
Query: 975 MEL--VELKPLR-----QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
L V LR + VG GV LS Q++R++IA L+ N I+ +D+ S +D
Sbjct: 425 ARLASVHDDILRLPQGYDTEVGERGVM-LSGGQKQRISIARALLLNAEILILDDALSAVD 483
Query: 1028 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHH 1084
R ++ +R + GRTV+ + H+ S + EA E+ +M+ G + G+H
Sbjct: 484 GRTEHQILHNLRQWGE-GRTVIISAHRLSA-LTEA-SEILVMQHGH----IAQRGNH 533
|
Length = 569 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 37/167 (22%), Positives = 66/167 (39%), Gaps = 31/167 (18%)
Query: 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGDIRISGYPKKQETFARISGYC 934
G+ + ++G +G GKTT + +LAG G I ++ Y K Q A G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-KPQYIKADYEG-- 76
Query: 935 EQNDIHSPFVTVYESLFYSAWLRLPPEV--NSETRKMFIEEVMELVELKPLRQSLVGLPG 992
TV + L + + T F E+ + ++++ + V
Sbjct: 77 ----------TVRDLLS---------SITKDFYTHPYFKTEIAKPLQIEQILDREV---- 113
Query: 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 114 -PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 4e-04
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
+L+DVS V G+LT++LG SGK+TLL +L + + S GRV ER
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRV----------WAER 721
Query: 227 TAAYISQHDNHIGEMTVRETLAF-----AARCQGV 256
+ AY+ Q I TVR + F AAR
Sbjct: 722 SIAYVPQQ-AWIMNATVRGNILFFDEEDAARLADA 755
|
Length = 1560 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 4e-04
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1042
LR+ L+ P + LS +++RL A L+ P +F+DE TS LD + + + ++
Sbjct: 80 LREQLI-YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK--- 135
Query: 1043 DTGRTVVCTIHQPSIDIF 1060
+ G TV+ H+PS+ F
Sbjct: 136 ELGITVISVGHRPSLWKF 153
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG 216
+L++VS ++PG ++GP SGK+TL + G L P+ SGRV +G
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDG 63
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 5e-04
Identities = 48/223 (21%), Positives = 81/223 (36%), Gaps = 53/223 (23%)
Query: 157 ILPSTKKHL-----TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPSLKVS 209
I+ S+ HL LK + +T L+GP GK+T L L L P + ++
Sbjct: 5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTIT 64
Query: 210 GRVTYNGHN-----MDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLT 264
G V+ G N D + + Q N ++ E + + R GV
Sbjct: 65 GNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF-PFSIYENVIYGLRLAGV-------- 115
Query: 265 ELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR-- 322
D V +A T ++A + + V D +
Sbjct: 116 --------------KDKAVLDEAVETSLKQAAIWDE---------------VKDHLHESA 146
Query: 323 -GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN 364
+SGGQ++RV ++ + +DE ++ LD ++ QI N
Sbjct: 147 LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIEN 189
|
Length = 252 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-04
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 30/175 (17%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKT----TLMDVLAGRKTGGYITGDIRISG-----YPK 922
+ G+S G AL+G SG+GK+ +++ +L + +G I G +
Sbjct: 26 VKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFDGEDLLAASE 84
Query: 923 KQETFARISGYCEQNDIH----------SPFVTVYESLFYSAWLRLPPEVNSETRKMFIE 972
+Q + G N I +P T+ + L + LRL ++ +
Sbjct: 85 RQ--LRGVRG----NKIGMIFQEPMTSLNPLHTIGKQL--AEVLRLHRGLSRAAARARAL 136
Query: 973 EVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
E++ELV + + L P + LS QR+R+ IA+ L P ++ DEPT+ LD
Sbjct: 137 ELLELVGIPEPEKRLDAYP--HELSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
|
Length = 534 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 986 SLVGLP------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
LVGL LS Q++R+ +A L P + DEPT+GLD + ++
Sbjct: 150 ELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFD 209
Query: 1040 NTVDTGRTVVCTIH 1053
N G+T++ H
Sbjct: 210 NLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 5e-04
Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 42/202 (20%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLL--LALAGKLDPSLKVSGRVTYNGHNM-----D 220
LK+++ + +T ++GP GK+T + L L ++ P++K++G + YNG N+ D
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ + Q N + ++ + +A+ R G + ++ EK+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKL---QEIVEKS-------- 135
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
+K + E V + + L L SGGQ++R+ +
Sbjct: 136 ----LKDVALWDE---VKDRLHTQALSL----------------SGGQQQRLCIARALAT 172
Query: 341 PALALFMDEISTGLDSSTTFQI 362
L MDE ++ LD +T +I
Sbjct: 173 NPDVLLMDEPTSALDPVSTRKI 194
|
Length = 259 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 37/172 (21%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGDIRISGYPKKQET 926
+LN +S + R G + G SG GK+TL+ ++A +G + IS E
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP--EI 78
Query: 927 FARISGYCEQNDIHSPFV---TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
+ + YC Q +P + TVY++L + P ++ ++ +
Sbjct: 79 YRQQVSYCAQ----TPTLFGDTVYDNLIF------PWQIRNQQ-----------PDPAIF 117
Query: 984 RQSLV--GLP------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
L LP + LS +++R+++ L P ++ +DE TS LD
Sbjct: 118 LDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 5e-04
Identities = 37/266 (13%), Positives = 79/266 (29%), Gaps = 27/266 (10%)
Query: 1180 WSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGGKTEKRQDLSNA-MGSMFTALIFLGFEY 1238
+ + + + + I LL + L G+ + S + + +I + +
Sbjct: 42 FQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLF 101
Query: 1239 CISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAM---MS 1295
+ R + + + S + + +PY+ V SLI ++ + +
Sbjct: 102 SGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLG 161
Query: 1296 FDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPR 1355
+ + + + L L + + AS V L SG P
Sbjct: 162 VPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPL 221
Query: 1356 PRIPIWWRWYYWANPIAWTLYGLIASQYGDVEDKIETGETVKHFLRDYYGFKHSFLGAVA 1415
+P W + + NP+ + + LR Y G
Sbjct: 222 ELLPAWLQGISYINPLTYAI----------------------DALRYVYLGGWRNDGIWI 259
Query: 1416 GVLIAFAALFGILFPLGIKQFNFQRR 1441
+LI + LG+ +R+
Sbjct: 260 SLLI-LLLFAVVFLLLGLLLLRRRRK 284
|
Length = 286 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 5e-04
Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 36/209 (17%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L VS G L+G +GAGK+TL+ +LAG G +T R+S
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSS------LLGL 91
Query: 930 ISGYCEQNDIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVEL-----KPL 983
G+ ++ T E++ L L + E + I+E++E EL P+
Sbjct: 92 GGGF--NPEL-----TGRENIYLNGRLLGLSRK---EIDEK-IDEIIEFSELGDFIDLPV 140
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
+ S+ + RL A+ P I+ +DE + DA R +R +
Sbjct: 141 KT----------YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK 190
Query: 1044 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
G+TV+ H PS I D ++++G
Sbjct: 191 QGKTVILVSHDPSS-IKRLCDRALVLEKG 218
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 5e-04
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 17/206 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQET---FA 928
LNGVS + G +++G +G+GK+T ++ G G ++I G E
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLR 80
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
R G QN ++ F A + E + + EE+++ V+ L +++
Sbjct: 81 RKIGMVFQNP---------DNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNML 131
Query: 989 GLPGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
LS Q++R+ +A + P II +DE TS LD +MR + + +
Sbjct: 132 DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQ 191
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRG 1072
V +I +D + D + +MK G
Sbjct: 192 LTVLSITH-DLDEAASSDRILVMKAG 216
|
Length = 277 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 52/246 (21%), Positives = 95/246 (38%), Gaps = 54/246 (21%)
Query: 161 TKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMD 220
IL D++ ++ G++ ++G SGK+TLL + SG+V NG
Sbjct: 7 KFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGQETP 63
Query: 221 --------EFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKA 272
+F E Y+ Q+ I TV E L +G +Y+ L++ +REK
Sbjct: 64 PLNSKKASKFRRE-KLGYLFQNFALIENETVEENLD-------LGLKYKKLSKKEKREK- 114
Query: 273 AGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRV 332
K L+ +GL++ + + +SGG+++RV
Sbjct: 115 ------------KK--------------EALEKVGLNLKLKQKIYE-----LSGGEQQRV 143
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLF 392
++ P + DE + LD ++++ + +N I ++ PE
Sbjct: 144 ALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE---LNDEGKTIIIVTHDPEVAKQA 200
Query: 393 DDIILL 398
D +I L
Sbjct: 201 DRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG----HNMDEFV 223
LK +S ++ G + +GP +GKTT L L+G L P+ SG V G +F+
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFL 93
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFAARCQGV-----GTRYEMLTEL 266
R Q ++ V ++ A + R + L+EL
Sbjct: 94 -RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSEL 140
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 6e-04
Identities = 60/294 (20%), Positives = 116/294 (39%), Gaps = 19/294 (6%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
+LK++S ++ G + +LG +GK+ L+ L G +D SGR+ Y+ ++
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG-MDQYEPTSGRIIYHVALCEKCGY 71
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
+ + + G E + F + R + + A D +D
Sbjct: 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNV 131
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR-----RGVSGGQKKRVTTGEMMV 339
++A G E + ++ MV R R +SGG+K+RV +
Sbjct: 132 LEALEEIGYEGKEAVGRAVDLI-------EMVQLSHRITHIARDLSGGEKQRVVLARQLA 184
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETY-NLFDDIILL 398
DE + LD T + N ++ + + + V++ PE +L D I L
Sbjct: 185 KEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT--SHWPEVIEDLSDKAIWL 242
Query: 399 SDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDR 451
+G+I +G P E+V F E G +++ + + + ++ + + DR
Sbjct: 243 ENGEIKEEGTPDEVVAVFME--GVSEVEKECEVEVGEPIIKVRNVSKRYISVDR 294
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 58/210 (27%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPSLKVSGRVTYNGHN-----MD 220
LK ++ ++ ++T L+GP GK+T L L L PS+K+ G V +G + +D
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ + Q N M++ + +A+ R G+ + ++ + + K A +
Sbjct: 79 VNQLRKRVGMVFQQPNPF-PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAAL----- 132
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR---GVSGGQKKRVTTGEM 337
+E V D +++ G+SGGQ++R +
Sbjct: 133 -----------WDE---------------------VKDRLKKSALGLSGGQQQR-----L 155
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQI 362
+ ALA L MDE ++ LD +T +I
Sbjct: 156 CIARALAVEPEVLLMDEPTSALDPISTLKI 185
|
Length = 250 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 6e-04
Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 33/169 (19%)
Query: 876 SGAFRPG-VLTALMGVSGAGKTTLMDVLAGR--KTGGYITGDIRISGYPKKQETFARISG 932
G G V+ + G +G GKTT +LAG G + +++IS Y K Q I
Sbjct: 359 GGEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQ----YIKP 411
Query: 933 YCEQNDIHSPFVTVYESLFYSAWLR-LPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP 991
TV + LR + ++ S + E+++ ++L+ L V
Sbjct: 412 --------DYDGTVED------LLRSITDDLGSS---YYKSEIIKPLQLERLLDKNV--- 451
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
LS + +R+ IA L + + +DEP++ LD V + +R
Sbjct: 452 --KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498
|
Length = 590 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 7e-04
Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 36/160 (22%)
Query: 885 TALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDIHS 941
T ++G+SG+GK+TL +L G +G+I ++G+ K T + Y Q
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQE---- 556
Query: 942 PFV---TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998
P++ ++ E+L A + +E+ E+ ++ + +P G T
Sbjct: 557 PYIFSGSILENLLLGA-----------KENVSQDEIWAACEIAEIKDDIENMP--LGYQT 603
Query: 999 E-----------QRKRLTIAVELVANPSIIFMDEPTSGLD 1027
E Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 604 ELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 40/196 (20%)
Query: 855 MPQQMKLQGVP--EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGR 905
M ++K++GV K +L ++ F +TA++G SG GK+TL+ D+++G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 906 KTGGYITGDIRISGYPKKQ--ETFARISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEV 962
+ G + D P R+ +Q + PF ++++++ + P +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN---PFPKSIFDNVAFG------PRM 111
Query: 963 NSETRKMFIEEVMELVELKPLRQSLV-----------GLPGVNGLSTEQRKRLTIAVELV 1011
T + ++EV+E K LRQ+ + GL LS Q++RL IA L
Sbjct: 112 LGTTAQSRLDEVVE----KSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLA 163
Query: 1012 ANPSIIFMDEPTSGLD 1027
P +I MDEP S LD
Sbjct: 164 IEPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 7e-04
Identities = 67/256 (26%), Positives = 110/256 (42%), Gaps = 40/256 (15%)
Query: 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 903
+TF +V + P ++ L + V+ + G A++G +G+GK+TL+ L
Sbjct: 3 ITFQKVEHRYQY-------KTPFERRALYD-VNVSIPSGSYVAIIGHTGSGKSTLLQHLN 54
Query: 904 G--RKTGGYIT-GDIRISGY--PKKQETFARISGYCEQNDIHSPF-VTVYESLFYSAWLR 957
G + T G +T G+ I+ KK + + G Q H F TV + + +
Sbjct: 55 GLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFG---- 110
Query: 958 LPPE---VNSETRKMFIEEVMELVELKP--LRQSLVGLPGVNGLSTEQRKRLTIAVELVA 1012
P V+ E K E++ELV L L +S L G Q +R+ IA L
Sbjct: 111 --PMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSG------GQMRRVAIAGVLAM 162
Query: 1013 NPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071
P ++ +DEPT+GLD + +M + + G T V H D D++ +M +
Sbjct: 163 EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK 221
Query: 1072 GG-------REVYVGP 1080
G RE++ P
Sbjct: 222 GTVFLQGTPREIFADP 237
|
Length = 290 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 8e-04
Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 44/205 (21%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPSLKVSGRVTYNGHNM-----D 220
L D++ + R+T L+GP GK+TLL L P +++G + YNG N+ D
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
R + Q N + ++ E +A+ R G + + D
Sbjct: 82 VVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTL---------------DTI 125
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMM-V 339
++ +K A+ E + + D L +SGGQ++R+ + V
Sbjct: 126 VEKSLKGAALWDEVKDRLHDSAL-------------------SLSGGQQQRLCIARTLAV 166
Query: 340 GPALALFMDEISTGLDSSTTFQIVN 364
P + L MDE + LD T +I +
Sbjct: 167 NPEVIL-MDEPCSALDPIATAKIED 190
|
Length = 253 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 8e-04
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARI 930
+L+G+S P ++G +GAGK+++++ L + G I I +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLT-- 1306
Query: 931 SGYCEQNDIHSPFVTVYES-LFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLV 988
D+ + +S + +S +R + SE + E +E +K + ++
Sbjct: 1307 -------DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 989 GL-----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
GL G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 8e-04
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 38/171 (22%)
Query: 884 LTALMGVSGAGKTTLM---DVLAGRKTGGYITGDIRISGYPKKQ----------ETFARI 930
+TAL+G SG GK+T + + + G + G+I + +P E RI
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL--HPDNVNILSPEVDPIEVRMRI 101
Query: 931 SGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV- 988
S ++ + PF +++E++ Y +R R+ +EE +E LR + +
Sbjct: 102 SMVFQKPN---PFPKSIFENVAYGLRIR------GVKRRSILEERVE----NALRNAALW 148
Query: 989 -------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
G N LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 149 DEVKDRLGDLAFN-LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 8e-04
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 40/165 (24%)
Query: 884 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIT--GDIRISGYPKKQETFARISGYC 934
+TA +G SG GK+T++ D++ G + G +T G + E RI G
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRI-GMV 96
Query: 935 EQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV----- 988
Q +PF ++Y+++ Y +N M ELVE + LRQ+ +
Sbjct: 97 FQKP--NPFPKSIYDNIAYG------ARINGYKGDM-----DELVE-RSLRQAALWDEVK 142
Query: 989 ------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
GL LS Q++RL IA + P +I MDEP S LD
Sbjct: 143 DKLKQSGL----SLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 9e-04
Identities = 62/271 (22%), Positives = 101/271 (37%), Gaps = 61/271 (22%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE----- 221
+LK ++ +T L+G GK+TL + L+G L P G V + G +D
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGL 72
Query: 222 -FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ ++ A + I + +AF+ R GV E++RR
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPE-----AEITRR----------- 116
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
+D + + I + +S GQKKRV +V
Sbjct: 117 VDEALTLVDAQHFRHQPI-----------------------QCLSHGQKKRVAIAGALVL 153
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFK----QNIHINSGTAVISLLQPAPETYNLFDDII 396
A L +DE + GLD + Q++ + Q H+ + I L+ Y + D +
Sbjct: 154 QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEISDAVY 207
Query: 397 LLSDGQIVYQG-PRELVL--EFFESMGFKCP 424
+L GQI+ G P E+ E E G P
Sbjct: 208 VLRQGQILTHGAPGEVFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 56/210 (26%), Positives = 85/210 (40%), Gaps = 30/210 (14%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGD------IRIS 918
P+ K LN +S + G TAL+G +G+GK+T+ + G + D I +
Sbjct: 16 PDSKKPALNDISFSIPRGSWTALIGHNGSGKSTI-----SKLINGLLLPDDNPNSKITVD 70
Query: 919 GYPKKQETFARIS---GYCEQNDIHSPFV--TVYESLFYSAWLRLPPEVNSETRKMFIEE 973
G +T I G QN + FV TV + + + R V + +
Sbjct: 71 GITLTAKTVWDIREKVGIVFQNP-DNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRD 126
Query: 974 VMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1033
V+ V + S LS Q++R+ IA L P II +DE TS LD
Sbjct: 127 VLADVGMLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQ 181
Query: 1034 VMRTVRN-TVDTGRTVVCTIHQPSIDIFEA 1062
+++ +R TV+ H DI EA
Sbjct: 182 ILKLIRKLKKKNNLTVISITH----DIDEA 207
|
Length = 282 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 61/264 (23%), Positives = 94/264 (35%), Gaps = 72/264 (27%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T L +SG V+ G + L+GP +GK+TLL +AG SG + + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGSGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
A AY+SQ M V L Q TR E+L +++
Sbjct: 69 ELARHRAYLSQQQTPPFAMPVWHYLTLH---QPDKTRTELLNDVAGA------------- 112
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV---SGGQKKRVTTGE--M 337
L LD D++ R SGG+ +RV +
Sbjct: 113 -----------------------LALD--------DKLGRSTNQLSGGEWQRVRLAAVVL 141
Query: 338 MVGPAL-----ALFMDEISTGLD---SSTTFQIVNCFKQNIHINSGTAVISLLQPAPETY 389
+ P L +DE LD S ++++ Q G A++ T
Sbjct: 142 QITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-----QGLAIVMSSHDLNHTL 196
Query: 390 NLFDDIILLSDGQIVYQGPRELVL 413
LL G+++ G RE VL
Sbjct: 197 RHAHRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 293 EEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT-TGEMMVGPALALFMDEIS 351
EA + +YL +GLD D+ + + G+SGGQK+RV G + + P + +F DE +
Sbjct: 150 SEAKKLAKFYLNKMGLD---DSYL-ERSPFGLSGGQKRRVAIAGILAIQPEILIF-DEPT 204
Query: 352 TGLD---SSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG- 407
GLD Q++ K N V + + D++I++ G+I+ G
Sbjct: 205 AGLDPKGEHEMMQLILDAKAN-----NKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
Query: 408 PRELVL--EFFESMGFKCPKRKGVADFLQEVTSK 439
P E+ S + P+ V + ++ K
Sbjct: 260 PYEIFTDQHIINSTSIQVPR---VIQVINDLIKK 290
|
Length = 320 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 64/255 (25%), Positives = 103/255 (40%), Gaps = 51/255 (20%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF----V 223
LKDVS V G ++G SGK+TL L G L P +G +T G + E V
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDV 79
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
+ DN TV++ +AF GV R EM+ R A
Sbjct: 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENIGV-PREEMV----ERVDQA---------- 124
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
L+ +G++ + E R +SGGQK+RV ++
Sbjct: 125 -------------------LRQVGMEDFLN----REPHR-LSGGQKQRVAIAGVLALQPD 160
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403
+ +DE ++ LD +++ +Q + G V+S+ E D +I+++ G+I
Sbjct: 161 IIILDEATSMLDPRGRREVLETVRQ-LKEQKGITVLSITHDLDEAAQA-DRVIVMNKGEI 218
Query: 404 VYQGPRELVLEFFES 418
+ +G E E F+S
Sbjct: 219 LEEGTPE---EIFKS 230
|
Length = 279 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 63/282 (22%), Positives = 111/282 (39%), Gaps = 70/282 (24%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF----- 222
+ DVS V+ G + +++G SGK+TLL + ++P+ SG+V +G ++
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKEL 96
Query: 223 --VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ + + + Q + TV E +AF QGV R E+AA
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP-------RAEREERAA------- 142
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
EA L+++GL+ + +SGG ++RV +
Sbjct: 143 -------------EA-------LELVGLEGWEHKYPDE-----LSGGMQQRVG-----LA 172
Query: 341 PALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395
ALA L MDE + LD ++ + + + ++ + E L D I
Sbjct: 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLR-LQAELQKTIVFITHDLDEALRLGDRI 231
Query: 396 ILLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
++ DG++V G P E++ P V +F + V
Sbjct: 232 AIMKDGRLVQVGTPEEILTN---------PANDYVREFFRGV 264
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQ 383
+SGGQ +++ ++ + +DE + GLD + Q++ K + + +I +
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS-LQTDENKTIILVSH 204
Query: 384 PAPETYNLFDDIILLSDGQIVYQG-PREL 411
E D++I++ +G IV Q P+EL
Sbjct: 205 DMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
Length = 286 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.001
Identities = 60/239 (25%), Positives = 97/239 (40%), Gaps = 52/239 (21%)
Query: 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDP---SLKVSGRVTYNGHNMDEFVPE---RTA 228
+ G+ L+GP +GKT+LL AL G L P SLK+ NG + E PE +
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKI------NGIELRELDPESWRKHL 425
Query: 229 AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAA 288
+++ Q + + T+R+ + PD + +A
Sbjct: 426 SWVGQ-NPQLPHGTLRDNVLLG-------------------------NPDASDEQLQQAL 459
Query: 289 STEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMD 348
E A V L GLD T +GD+ G+S GQ +R+ ++ P L +D
Sbjct: 460 ----ENAWVSEFLPLLPQGLD----TPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLD 510
Query: 349 EISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG 407
E + LD+ + ++ + V L+ + +D I ++ DGQIV QG
Sbjct: 511 EPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ----WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 55/251 (21%), Positives = 97/251 (38%), Gaps = 49/251 (19%)
Query: 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF 222
K + L +VS V G++ ++G +GK+TL+ + P+ SG V +G ++
Sbjct: 16 KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTL 72
Query: 223 V-PERTAA-----YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIK 276
E T A I QH N + TV +A
Sbjct: 73 SNSELTKARRQIGMIFQHFNLLSSRTVFGNVALP-------------------------- 106
Query: 277 PDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE 336
++ +T +E L ++GL D +SGGQK+RV
Sbjct: 107 --------LELDNTPKDEIKRKVTELLALVGL-----GDKHDSYPSNLSGGQKQRVAIAR 153
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396
+ L DE ++ LD +TT I+ K+ I+ G ++ + + D +
Sbjct: 154 ALASNPKVLLCDEATSALDPATTQSILELLKE-INRRLGLTILLITHEMDVVKRICDCVA 212
Query: 397 LLSDGQIVYQG 407
++S+G+++ QG
Sbjct: 213 VISNGELIEQG 223
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 863 GVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921
GV +L G+ G + AL+G +GAGK+TLM ++AG +G + I G P
Sbjct: 23 GVE-----VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNP 74
|
Length = 510 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.002
Identities = 43/204 (21%), Positives = 79/204 (38%), Gaps = 49/204 (24%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS 931
+ VS R G + + G+ GAG+T L L G + +G+I + G
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR--PASSGEILLDG------------ 320
Query: 932 GYCEQNDIHSP---------FVT-------------VYESLFYSAWLRLPPE--VNSETR 967
+ I SP +V + E++ ++ R ++
Sbjct: 321 ---KPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKE 377
Query: 968 KMFIEEVMELVELKP--LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025
+ E + + +K Q + L G N Q+K + +A L +P ++ +DEPT G
Sbjct: 378 RALAERYIRRLRIKTPSPEQPIGTLSGGN-----QQK-VVLARWLATDPKVLILDEPTRG 431
Query: 1026 LDARAAAIVMRTVRNTVDTGRTVV 1049
+D A A + R +R G+ ++
Sbjct: 432 IDVGAKAEIYRLIRELAAEGKAIL 455
|
Length = 500 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 58/258 (22%), Positives = 90/258 (34%), Gaps = 40/258 (15%)
Query: 158 LPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGH 217
L T L V + G + LLGP SGK+TLL L+G + + G
Sbjct: 10 LAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGR 69
Query: 218 NM--------DEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRR 269
+ D YI Q N + ++V E + A +G+ T S
Sbjct: 70 TVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA----LGSTPFWRTCFS-- 123
Query: 270 EKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQK 329
F + +A L +G+ A V +SGGQ+
Sbjct: 124 -------------WFTREQKQRALQA-------LTRVGMVHFAHQRVST-----LSGGQQ 158
Query: 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETY 389
+RV ++ A + DE LD + +IV ++I+ N G V+ L
Sbjct: 159 QRVAIARALMQQAKVILADEPIASLDPESA-RIVMDTLRDINQNDGITVVVTLHQVDYAL 217
Query: 390 NLFDDIILLSDGQIVYQG 407
+ I+ L G + Y G
Sbjct: 218 RYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 29/182 (15%)
Query: 862 QGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGDIRIS 918
+G P +K L+ V+ G L+G +G+GK+TL+ L G +G I + I+
Sbjct: 14 EGTPFEK-KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDIT 72
Query: 919 GYPKKQETFARISGYCEQNDIHSPFV-TVYESL-FYSAWLRLPPEVNSETRKMFIEEVME 976
K + G Q + F T+ + + F L L + E + ++ M
Sbjct: 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGL----SEEEIENRVKRAMN 128
Query: 977 LVELK--------PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
+V L P LS Q++R+ IA + P I+ +DEPT+GLD
Sbjct: 129 IVGLDYEDYKDKSPFE-----------LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177
Query: 1029 RA 1030
+
Sbjct: 178 KG 179
|
Length = 287 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL-KVSGRVTYNGHNMDE-FVPERT 227
D++ +K G + L+G SGK+ LA+ G L P L + SG + +G + + R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 228 AAYISQ 233
A I Q
Sbjct: 64 IATIMQ 69
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 53/269 (19%), Positives = 107/269 (39%), Gaps = 52/269 (19%)
Query: 149 EDLLN----YLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL-- 202
ED+ N YL+I ILKD++ + + ++GP SGK+TLL L +
Sbjct: 8 EDVFNISRLYLYI-----NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI 62
Query: 203 -DPSLKVSGRVTYNGHN---MDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGT 258
D +KV G+V Y G + +D + + Q N +++ + +A+ + G+
Sbjct: 63 YDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKE 122
Query: 259 RYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318
+ E+ + + G+ +V+ + S +
Sbjct: 123 KREIKKIVEECLRKVGLWK----EVYDRLNSPASQ------------------------- 153
Query: 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAV 378
+SGGQ++R+T + L MDE ++ +D + I + + + A+
Sbjct: 154 -----LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE---LKNEIAI 205
Query: 379 ISLLQPAPETYNLFDDIILLSDGQIVYQG 407
+ + + + D + L +G++V G
Sbjct: 206 VIVSHNPQQVARVADYVAFLYNGELVEWG 234
|
Length = 257 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 57/199 (28%), Positives = 84/199 (42%), Gaps = 38/199 (19%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVL--AGRKTGGYITGD-IRISGYPKKQETFARIS 931
VS + G A++G +GAGKTTL+++L T G I D I I+ +
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR--------- 404
Query: 932 GYCEQNDIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVE--------LKP 982
+ TV++ ++ +R + E EEV E + LK
Sbjct: 405 -----ESLRKSIATVFQDAGLFNRSIRENIRLGREGATD--EEVYEAAKAAAAHDFILKR 457
Query: 983 LR--QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
+LVG G N LS +R+RL IA ++ N I+ +DE TS LD A V+N
Sbjct: 458 SNGYDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA----RVKN 512
Query: 1041 TVDT---GRTVVCTIHQPS 1056
+D RT H+ S
Sbjct: 513 AIDALRKNRTTFIIAHRLS 531
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 26/204 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L +S G ++G +GAGK+TL+ ++AG + T +G ++++G +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT----SGKVKVTG---------K 89
Query: 930 ISGYCEQNDIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
++ E P +T E++ L L + E ++E++E EL +
Sbjct: 90 VAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDE----KVDEIIEFAEL----GDFI 141
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1048
P V S+ RL +V P I+ +DE + DA + + V+ +T+
Sbjct: 142 DQP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTI 200
Query: 1049 VCTIHQPSIDIFEAFDELFLMKRG 1072
V H I + D ++ G
Sbjct: 201 VLVSHDLGA-IKQYCDRAIWLEHG 223
|
Length = 249 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 60/257 (23%), Positives = 104/257 (40%), Gaps = 55/257 (21%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
L++V+ +KPG++ + GP SGK+TLL + D S G + ++ + +
Sbjct: 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKL--- 382
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
Q D+ + V F + ++ A G +PD
Sbjct: 383 -------QLDSWRSRLAVVSQTPF------------LFSDTVANNIALG-RPD------- 415
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTGEMMVGPAL 343
A E E + + +L L DT VG+ RGV SGGQK+R++ ++ A
Sbjct: 416 -ATQQEIEHVARLASVHDDILRLPQGYDTEVGE---RGVMLSGGQKQRISIARALLLNAE 471
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI------SLLQPAPETYNLFDDIIL 397
L +D+ + +D T QI++ +Q G VI S L A +I++
Sbjct: 472 ILILDDALSAVDGRTEHQILHNLRQ---WGEGRTVIISAHRLSALTEA-------SEILV 521
Query: 398 LSDGQIVYQGPRELVLE 414
+ G I +G + + +
Sbjct: 522 MQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.002
Identities = 53/206 (25%), Positives = 78/206 (37%), Gaps = 59/206 (28%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR 929
VLL VS + G LT ++G +G+GK+TL+ L
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS------------------------- 708
Query: 930 ISGYCEQNDIHSPFVTVYESLFY---SAWLRLPPEVNSETRK---MFIEE----VMELVE 979
Q +I V S+ Y AW+ +N+ R F EE + + V
Sbjct: 709 ------QFEISEGRVWAERSIAYVPQQAWI-----MNATVRGNILFFDEEDAARLADAVR 757
Query: 980 LKPLRQSLVGLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
+ L L L G GL TE Q+ R+++A + AN + +D+P S LDA
Sbjct: 758 VSQLEADLAQLGG--GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815
Query: 1029 RAAAIVMRTVRNTVDTGRTVVCTIHQ 1054
V+ G+T V HQ
Sbjct: 816 HVGERVVEECFLGALAGKTRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+LKD+S + PG L+G +GK+TLL +AG+L+P G VT+
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGSTV------- 63
Query: 226 RTAAYISQ 233
Y Q
Sbjct: 64 -KIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 18/51 (35%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS---LKVSGRVTY 214
+LK+++ ++ G + + G SGKT+LL+ + G+L+PS +K SGR+++
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISF 102
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 32/181 (17%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL---AGRKTGGYITGDIRISG---YPKKQE 925
+ G+S +TA++G SG GK+T + L + + + G + G Y +
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82
Query: 926 T--FARISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV---- 978
R G Q +PF +++YE++ Y ++++ + ++E++E
Sbjct: 83 INRLRRQIGMVFQRP--NPFPMSIYENVAYGV------RISAKLPQADLDEIVESALKGA 134
Query: 979 ----ELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1033
E+K L +S +GL G Q++RL IA L P ++ MDEP S LD A
Sbjct: 135 ALWQEVKDKLNKSALGLSG------GQQQRLCIARALAIKPKVLLMDEPCSALDPIATMK 188
Query: 1034 V 1034
V
Sbjct: 189 V 189
|
Length = 259 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 19/208 (9%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGDIRISGYPKKQETFAR 929
L ++ G AL+G SG+GK+T+ ++L T Y G+I + G+ + T A
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 930 ISGYC---EQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
+ QN +H T+ ++ Y+ + E E +M M+ + +
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARM--AYAMDFIN--KMDNG 469
Query: 987 LVGLPGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
L + G NG LS QR+R+ IA L+ + I+ +DE TS LD + + + + +
Sbjct: 470 LDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQK 528
Query: 1045 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
RT + H+ S E DE+ +++ G
Sbjct: 529 NRTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 27/165 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGDIRISGYPKKQETFAR 929
LNG++ + G L A++G G GK++L+ L K G++ ++ P++ A
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ----AW 709
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL---RQS 986
I QND ++ E++ + L N + + +E L +L+ L ++
Sbjct: 710 I-----QND------SLRENILFGKAL------NEKYYQQVLEACALLPDLEILPSGDRT 752
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1031
+G GVN LS Q++R+++A + +N I D+P S +DA
Sbjct: 753 EIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1054
LS Q++R+ IA + P II +DE TS LD +++T++ D TV+ H
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH- 199
Query: 1055 PSIDIFEAFDELFLMKRGGRE 1075
+D D + +MK G E
Sbjct: 200 -DLDEVALSDRVLVMKNGQVE 219
|
Length = 279 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM 219
T + ++S V + LLGP +GK+TLL + G L P+ SG + ++GH
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPW 64
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 61/252 (24%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
IL +S + G+ ++G +GK+T+L L D + SG +T +G ++ + +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQS 334
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
R A I D + T+ + + + + E
Sbjct: 335 LRRAIGIVPQDTVLFNDTIAYNIKYGR------------PDATAEEV------------- 369
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG--VSGGQKKRVTTGEMMVGPA 342
AA+ + + I L DT VG+ RG +SGG+K+RV ++
Sbjct: 370 -GAAAEAAQIHDFIQS-------LPEGYDTGVGE---RGLKLSGGEKQRVAIARTILKNP 418
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSG---TAVI----SLLQPAPETYNLFDDI 395
L +DE ++ LD+ T I + + S T VI S + A D+I
Sbjct: 419 PILILDEATSALDTHTEQAI----QAALREVSAGRTTLVIAHRLSTIIDA-------DEI 467
Query: 396 ILLSDGQIVYQG 407
I+L +G+IV +G
Sbjct: 468 IVLDNGRIVERG 479
|
Length = 497 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 45/204 (22%), Positives = 83/204 (40%), Gaps = 47/204 (23%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPSLKVSGRVTYNGH----NMDE 221
LK ++ + ++T L+GP GK+TLL L L +K++G++T +G N+D
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
+ Q N M++ E +A+ R QG+ + + D +
Sbjct: 79 ADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVL---------------DEVV 122
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR---GVSGGQKKRVTTGEMM 338
+ ++ A+ E V D ++ G+SGGQ++R+ +
Sbjct: 123 ERSLRGAALWDE----------------------VKDRLKSHAFGLSGGQQQRLCIARTI 160
Query: 339 VGPALALFMDEISTGLDSSTTFQI 362
+ MDE ++ LD T +I
Sbjct: 161 AMEPDVILMDEPTSALDPIATHKI 184
|
Length = 249 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVV 1049
P LS Q++R+ IA L+ P I+ +DE TS LD+ + ++ +T+ + D +T++
Sbjct: 1354 PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTII 1413
Query: 1050 CTIHQ 1054
H+
Sbjct: 1414 TIAHR 1418
|
Length = 1466 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
LS Q++RL IA + P+++ MDEP S LD A ++ ++
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 19/161 (11%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYC 934
+S R G A++G +G+GK+TL +LAG +G++ I +P + Y
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLHFGDY----SYR 85
Query: 935 EQNDIHSPFVTVYESL--------FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
Q I F SL LRL ++ E R+ I E + V L P S
Sbjct: 86 SQR-IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS 144
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 145 Y--YP--HMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM 219
I ++S V G++T ++GP GKTTLL + G++ P G + ++G N+
Sbjct: 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENI 71
|
Length = 269 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1441 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-254 Score=2343.34 Aligned_cols=1339 Identities=53% Similarity=0.919 Sum_probs=1255.8
Q ss_pred cchHHhhHHHHHhhCCChhhhhhcccccC-CCCcceecccCcChHHhHHHHHHhhhccccchHHHHHHHHHHHHhcCCCC
Q 000529 36 EDDEEALKWAAIEKLPTYNRLKKGLLTTS-QGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVL 114 (1441)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 114 (1441)
+||||+|||||+|||||++| +++.+. ++ ++|+.+++..+++.++++..+..++|+++++.++++|++++ ++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~ 83 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFES---EVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--EL 83 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhccC---cccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cC
Confidence 45999999999999999999 665532 22 79999999999999999999999999999999999999998 89
Q ss_pred CcceEEEeeeEEEEEeecccccCCChhhhhhHHHHHHhhhhhcCCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHH
Q 000529 115 PTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTL 194 (1441)
Q Consensus 115 p~v~v~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTL 194 (1441)
|.++++++++.+++++..| ||+.|...+.++.++...+.. ++.+++||+|+||.++||||++++||||||||||
T Consensus 84 p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttl 157 (1391)
T KOG0065|consen 84 PTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTL 157 (1391)
T ss_pred CceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHH
Confidence 9999999999999998765 999999999998887776654 5567899999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCcceEEEECCeeCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcC
Q 000529 195 LLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAG 274 (1441)
Q Consensus 195 L~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~ 274 (1441)
|++|+|.++...+..|+|+|||++.+++.+++.++|++|+|.|+|+|||||||+|+++|++++.|++ +..|+|++.
T Consensus 158 lkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~- 233 (1391)
T KOG0065|consen 158 LKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA- 233 (1391)
T ss_pred HHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH-
Confidence 9999999998877889999999999999989999999999999999999999999999999999887 666776642
Q ss_pred CCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCC
Q 000529 275 IKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGL 354 (1441)
Q Consensus 275 i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgL 354 (1441)
..+|++++++||++|+||+||++++||+||||||||+||+++++++++++|||+|+||
T Consensus 234 ----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GL 291 (1391)
T KOG0065|consen 234 ----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGL 291 (1391)
T ss_pred ----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccc
Confidence 2689999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHH
Q 000529 355 DSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQ 434 (1441)
Q Consensus 355 Ds~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 434 (1441)
|++|+.+++++||+++|..+.|.+++++||+++++++||+|++|++|++||+||++++++||+++||.||+++++|||++
T Consensus 292 DSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt 371 (1391)
T KOG0065|consen 292 DSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLT 371 (1391)
T ss_pred cHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCchhhhhhhhccCCCCcccCHHHHHHHHHhchhhhhhHhhhcCcccccccccccccCcccccchHHHHHHHHHHHHH
Q 000529 435 EVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELL 514 (1441)
Q Consensus 435 ~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~ 514 (1441)
+++++++++++|..+..|+.+.+++++.+.|..++.+.++..+++.|+++.+.++.++..++|.++.|+|+++|+.|+++
T Consensus 372 ~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~ 451 (1391)
T KOG0065|consen 372 EVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFL 451 (1391)
T ss_pred HhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCccccchhhhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHhhhcCC
Q 000529 515 LMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKF 594 (1441)
Q Consensus 515 ~~~R~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~ 594 (1441)
+++||.+++++++++.+++++++|++|+++.+ ++..++..+.|++||++++.++++++++.+++.++|||+|||+..|
T Consensus 452 l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~f 529 (1391)
T KOG0065|consen 452 LMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSF 529 (1391)
T ss_pred HHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccc
Confidence 99999999999999999999999999999885 5566788999999999999999999999999999999999999999
Q ss_pred cChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 000529 595 FPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFA 674 (1441)
Q Consensus 595 y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~~l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~ 674 (1441)
||||+|+++++++++|++++++++|++|+||++|+.++++|||.+++++++.++|++++|++++++++++.+|+.+|++.
T Consensus 530 Y~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~ 609 (1391)
T KOG0065|consen 530 YPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGIL 609 (1391)
T ss_pred cChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccchhhHHHHHHhHcHHHHHHHHHHHhhhcCCCCcccc------------CC---CccchhHHhhhc
Q 000529 675 VLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFT------------PT---STESLGVQVLES 739 (1441)
Q Consensus 675 ~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~~~~~~------------~~---~~~~~g~~~l~~ 739 (1441)
++++.+++||+|++.+||+||+|++|++|++|++++++.|||++++|.|.. .. ...+.|..+++.
T Consensus 610 ~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g 689 (1391)
T KOG0065|consen 610 LLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSG 689 (1391)
T ss_pred HHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEec
Confidence 999999999999999999999999999999999999999999999999971 11 235678899999
Q ss_pred cccc-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccccccccccCcccccCCCCCCCCCc
Q 000529 740 REFF-----AHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGTVQLSNCGESGNDNR 814 (1441)
Q Consensus 740 ~~~~-----~~~~~~w~~~~~l~~~~v~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1441)
+++. ...+|+|+++|+++||.++|++++.+++.|+++..+.++.+..+.......... . .....
T Consensus 690 ~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~---------~--~~~~~ 758 (1391)
T KOG0065|consen 690 RDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKS---------A--GSSSE 758 (1391)
T ss_pred ccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchh---------c--ccccc
Confidence 8887 778999999999999999999999999999999888777765443322110000 0 00000
Q ss_pred ccCCCCcccccccCCCCCCCccccCCCceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCC
Q 000529 815 ERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAG 894 (1441)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaG 894 (1441)
.. ...+......+++..|+.+..++++||.|.+++|-+++.+| +++++|+|||+.++||.++||||+||||
T Consensus 759 -----~~-~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAG 829 (1391)
T KOG0065|consen 759 -----IE-KLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAG 829 (1391)
T ss_pred -----cc-ccccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCc
Confidence 00 00011111345778899999999999999999998887776 6788999999999999999999999999
Q ss_pred hHHHHHhhcCCCCCceEEEEEEEcCccCCccccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 000529 895 KTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEV 974 (1441)
Q Consensus 895 KSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~ 974 (1441)
||||||+|+||+++|.++|+|.+||.|+++.+++|.+|||+|+|+|.|.+||+|+|.|+|.||+|.+++.+++.+.||++
T Consensus 830 KTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~V 909 (1391)
T KOG0065|consen 830 KTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEV 909 (1391)
T ss_pred hHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCC-CeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec
Q 000529 975 MELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1053 (1441)
Q Consensus 975 l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p-~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H 1053 (1441)
++.+||++++|.+||.|| +|||++|||||+||++|++|| .||||||||||||++++..|++++|+++++|+|||||+|
T Consensus 910 i~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIH 988 (1391)
T KOG0065|consen 910 IELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIH 988 (1391)
T ss_pred HHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 999999999999999999 999999999999999999999 899999999999999999999999999999999999999
Q ss_pred CCcHHHHHhhCeEEEEecCcEEEEEcCCCCcchhHHHHHHhCCCcccCCCCCCccccchhcccchhhhhccccHHHHHHh
Q 000529 1054 QPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIPGVEKIKDGYNPATWMLEVSASSQEVALGVDFCDIYKR 1133 (1441)
Q Consensus 1054 ~~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yf~~~~~~~~~~~~~npad~~l~v~~~~~~~~~~~~~~~~~~~ 1133 (1441)
|||.++++.||++++|++||++||+||+|++++++++||++++|++ |++..||||||||+++.+.+...+.||+++|++
T Consensus 989 QPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~ 1067 (1391)
T KOG0065|consen 989 QPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDFAEIWKN 1067 (1391)
T ss_pred CCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccHHHHHhc
Confidence 9999999999999999999999999999999999999999999885 666669999999999998888888999999999
Q ss_pred cHHHHHHHHHHHhhCCCCCC-CCCCcccccCCccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccCCC
Q 000529 1134 SELYRRNKLLIEDLSKPAPG-SKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGG 1212 (1441)
Q Consensus 1134 S~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~ 1212 (1441)
|++++++++++++++.++++ +.+..++++|++|+|.|++.|+|||+++|||+|+|+.+|++++++.||++|++||++|+
T Consensus 1068 S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~ 1147 (1391)
T KOG0065|consen 1068 SEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH 1147 (1391)
T ss_pred cHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC
Confidence 99999999999999999988 78888999999999999999999999999999999999999999999999999999994
Q ss_pred CCCcHhhHHHHHhHHHHHHHHHhHHhhhhhhhhHHhhhHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHhhheeeec
Q 000529 1213 KTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYA 1292 (1441)
Q Consensus 1213 ~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~vf~rE~~~~~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~ 1292 (1441)
++||++|.+|++|+++++.+.+++..++|.+..||.++|||+++||||+.||++||+++|+||.++++++|.+|+|+
T Consensus 1148 ---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~ 1224 (1391)
T KOG0065|consen 1148 ---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYY 1224 (1391)
T ss_pred ---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeee
Confidence 68999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHH
Q 000529 1293 MMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIA 1372 (1441)
Q Consensus 1293 ~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~ 1372 (1441)
|+||++++.+|+||++++++..+|++++|||+.+++||.++|+++++++++++++||||++|++.||.||+||||+||++
T Consensus 1225 ~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~t 1304 (1391)
T KOG0065|consen 1225 PIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVT 1304 (1391)
T ss_pred eccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCccccc----------CCCcHHHHHHhhcC----CcccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000529 1373 WTLYGLIASQYGDVEDKIE----------TGETVKHFLRDYYG----FKHSFLGAVAGVLIAFAALFGILFPLGIKQFNF 1438 (1441)
Q Consensus 1373 y~~~~l~~~~~~~~~~~~~----------~g~~~~~~~~~~~g----~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1438 (1441)
|.++|++..++||.+..|. +|+||++|+++++| |.++.......+.++|.+++.+++.+++|+.||
T Consensus 1305 y~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~ 1384 (1391)
T KOG0065|consen 1305 YTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNF 1384 (1391)
T ss_pred HHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHH
Confidence 9999999999999999883 45799999999999 999999988899999999999999999999999
Q ss_pred cCC
Q 000529 1439 QRR 1441 (1441)
Q Consensus 1439 ~~r 1441 (1441)
|||
T Consensus 1385 wrn 1387 (1391)
T KOG0065|consen 1385 WRN 1387 (1391)
T ss_pred HHh
Confidence 987
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-237 Score=2360.37 Aligned_cols=1421 Identities=60% Similarity=1.058 Sum_probs=1273.8
Q ss_pred cccccCCCCcccCC---C----CCcchHHhhHHHHHhhCCChhhhhhcccccC-----CCC---cceecccCcChHHhHH
Q 000529 19 SRWRTGSVGAFSMS---S----REEDDEEALKWAAIEKLPTYNRLKKGLLTTS-----QGE---AFEVDVSNLGLQERQR 83 (1441)
Q Consensus 19 ~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~ 83 (1441)
++|.. +++|++. + ..|||||+|+|||+||||||+|+|++++.+. .|+ .+|+|+++|+.+|++.
T Consensus 19 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1470)
T PLN03140 19 SSRNM--EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQK 96 (1470)
T ss_pred hhhhh--hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHH
Confidence 34633 5788542 1 3578999999999999999999999999652 122 2369999999999999
Q ss_pred HHHHhhhccccchHHHHHHHHHHHHhcCCCCCcceEEEeeeEEEEEeecccccCCChhhhhhHHHHHHhhhhhcCCCccc
Q 000529 84 LINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKK 163 (1441)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~v~v~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (1441)
+++++++++++|++++++++++|.+++|+++|++||+|+||+|++++.++++.+||++|...+.++.+.+.++...+++.
T Consensus 97 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~ 176 (1470)
T PLN03140 97 FIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKT 176 (1470)
T ss_pred HHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999988887766555445556
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCccceEEEEcCCCCCCCCCCH
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTV 243 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1441)
+++||+|+|+.++|||+++|+||||||||||||+|+|+++|+.+++|+|+|||+++++..+++.++||+|+|.|++++||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 78899999999999999999999999999999999999998777899999999999877667889999999999999999
Q ss_pred HHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccC
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1441)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 323 (1441)
+|||.|+++|++.+.++++..+++++|++.++.|+.++|.+|++...++.+.+..++++|+.+||++|+||.||+++.||
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 99999999999877777766777888888888999999999999888887778889999999999999999999999999
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000529 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1441)
Q Consensus 324 LSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~i 403 (1441)
|||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||.++++++||+|++|++|++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 99999999999999999999999999999999999999999999998766789999999999999999999999999999
Q ss_pred EEEcCHHHHHHHHHhcCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHHhchhhhhhHhhhcCccc
Q 000529 404 VYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFD 483 (1441)
Q Consensus 404 v~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1441)
+|+||++++.+||+++||+||+++++|||+++++++++++++|.....|+++.++++++++|++++.++++.++++.|.+
T Consensus 417 vy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 496 (1470)
T PLN03140 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFD 496 (1470)
T ss_pred EEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999988888887766777778999999999999999888888777776
Q ss_pred ccccccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCccccchhhhHHHHH
Q 000529 484 KSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFF 563 (1441)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lf~ 563 (1441)
++..++.....++|..++++|+++|++|++++++||+..+++|+++.+++|+++|++||+++.+..+..++..+.|++||
T Consensus 497 ~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff 576 (1470)
T PLN03140 497 KSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLF 576 (1470)
T ss_pred hhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHH
Confidence 66556665666789999999999999999999999999999999999999999999999987765555667888999999
Q ss_pred HHHHHHHHHHHHHHHhhhhchhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHH
Q 000529 564 TIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLL 643 (1441)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~~l~~ 643 (1441)
++++.+++++++++.++.+||+|+|||+.+||++|+|++|++++++|+.++++++|++|+|||+||++++++||.|++++
T Consensus 577 ~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~ 656 (1470)
T PLN03140 577 SMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLV 656 (1470)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHhHcHHHHHHHHHHHhhhcCCCCcc
Q 000529 644 LAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKK 723 (1441)
Q Consensus 644 ~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~~~~ 723 (1441)
++.+++++++|++++++++++.+|+.+++++++++++|+||++++++||+||+|++|+||++|+++++++|||.+..|.+
T Consensus 657 ~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~ 736 (1470)
T PLN03140 657 FLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMN 736 (1470)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988864
Q ss_pred cc-CCCccchhHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccccccccccC--c
Q 000529 724 FT-PTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGG--T 800 (1441)
Q Consensus 724 ~~-~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~v~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 800 (1441)
.. .+.....|.++|+.+++.....|+|++++++++++++|+++++++|+|.++..+....+.++............ .
T Consensus 737 ~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1470)
T PLN03140 737 KMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRS 816 (1470)
T ss_pred cccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccccc
Confidence 32 23345789999999999988899999999999999999999999999998766655443322111000000000 0
Q ss_pred ccccCCCC---CC---CCCccc-C-CCCcccccccCCCCCCCccccCCCceeeEeceEEEEeccchhhccCCCCCceeee
Q 000529 801 VQLSNCGE---SG---NDNRER-N-SSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLL 872 (1441)
Q Consensus 801 ~~~~~~~~---~~---~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 872 (1441)
........ .. ...... . ..............++++.+|+.|..++|+||+|+++.+..++..+..++++++|
T Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL 896 (1470)
T PLN03140 817 LSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLL 896 (1470)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEe
Confidence 00000000 00 000000 0 0000000000112345666789999999999999999887665555555667899
Q ss_pred eceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCccccceEEEEeccCCCCCCCCCHHHHHHH
Q 000529 873 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFY 952 (1441)
Q Consensus 873 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f 952 (1441)
+|||++++||+++|||||||||||||||+|+|+.++|..+|+|.+||.+.++..+++.+|||+|+|.+++.+||+|+|.|
T Consensus 897 ~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~ 976 (1470)
T PLN03140 897 REVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIY 976 (1470)
T ss_pred eCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHH
Confidence 99999999999999999999999999999999987777899999999887655567789999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHH
Q 000529 953 SAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032 (1441)
Q Consensus 953 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~ 1032 (1441)
++.++.+...+.+++++.++++++.+||.+++|+++|.+++++|||||||||+||+||+.+|+||||||||||||+.++.
T Consensus 977 ~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~ 1056 (1470)
T PLN03140 977 SAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1056 (1470)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Confidence 99888776666666777899999999999999999998888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCCCcchhHHHHHHhCCCcccCCCCCCccccch
Q 000529 1033 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIPGVEKIKDGYNPATWML 1112 (1441)
Q Consensus 1033 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yf~~~~~~~~~~~~~npad~~l 1112 (1441)
.+++.|++++++|+|||||+|||+.++++.||++++|++||+++|+||.+++++++++||++++|+++||+++||||||+
T Consensus 1057 ~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l 1136 (1470)
T PLN03140 1057 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWML 1136 (1470)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhh
Confidence 99999999998899999999999977899999999999889999999999988999999999988878999999999999
Q ss_pred hcccchhhhhccccHHHHHHhcHHHHHHHHHHHhhCCCCCCCCCCcccccCCccHHHHHHHHHHHHHHHHhcChHHHHHH
Q 000529 1113 EVSASSQEVALGVDFCDIYKRSELYRRNKLLIEDLSKPAPGSKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVR 1192 (1441)
Q Consensus 1113 ~v~~~~~~~~~~~~~~~~~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r 1192 (1441)
|+++.+.+.....||++.|++|++++++++.++++..+.++.++..++++|++++|+|++.|+||+++++||||.|+.+|
T Consensus 1137 ~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r 1216 (1470)
T PLN03140 1137 EVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVR 1216 (1470)
T ss_pred hhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHH
Confidence 99987666556679999999999999988888877777666666666788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCcHhhHHHHHhHHHHHHHHHhHHhhhhhhhhHHhhhHHHHhhhcCCCCChHHHHHHHH
Q 000529 1193 FLFTAFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQI 1272 (1441)
Q Consensus 1193 ~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~vf~rE~~~~~Y~~~~y~~a~~ 1272 (1441)
+++++++|+++|++||+++++..+++++++++|++|++++|+++.++++++|.+..||+||+|||++|+|++++|++|++
T Consensus 1217 ~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~ 1296 (1470)
T PLN03140 1217 FFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQV 1296 (1470)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHH
Confidence 99999999999999999998777789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhheeeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccc
Q 000529 1273 MIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPTHHIASIVSTLFFGLWLLFSGFI 1352 (1441)
Q Consensus 1273 l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~ 1352 (1441)
++|+|+.++++++|++|+|||+||++++.+||||+++++++.++++++|+++++++||.++|+.++++++++|++||||+
T Consensus 1297 l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~ 1376 (1470)
T PLN03140 1297 VCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFF 1376 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccchhhhhhccCHHHHHHHHHHHHHhCCCccccc-C----CCcHHHHHHhhcCCcccchhHHHHHHHHHHHHHHH
Q 000529 1353 IPRPRIPIWWRWYYWANPIAWTLYGLIASQYGDVEDKIE-T----GETVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGI 1427 (1441)
Q Consensus 1353 i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~~-~----g~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~ 1427 (1441)
+|+++||+||+|+||+||++|+++|+++|||+|.+..|+ + +.++++|++++|||+++++|++++|+++|+++|++
T Consensus 1377 i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~ 1456 (1470)
T PLN03140 1377 IPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAF 1456 (1470)
T ss_pred cChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999887663 2 36899999999999999999999999999999999
Q ss_pred HHHHHHHhccccCC
Q 000529 1428 LFPLGIKQFNFQRR 1441 (1441)
Q Consensus 1428 ~~~~~l~~~~~~~r 1441 (1441)
++++++|++|||||
T Consensus 1457 ~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1457 IFAFCIRTLNFQTR 1470 (1470)
T ss_pred HHHHHHHHhhcccC
Confidence 99999999999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-187 Score=1885.82 Aligned_cols=1287 Identities=32% Similarity=0.534 Sum_probs=1062.8
Q ss_pred ccchHHHHHHHHHHHHhcCCCCC--cceEEEeeeEEEEEeecccccCCChhhhhhHHHHHHhhhhhcCCCccccceeeec
Q 000529 93 EVDNEKFLLKLKNRIERVGIVLP--TVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKD 170 (1441)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~g~~~p--~v~v~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 170 (1441)
+.|++++++.++++.++.+...| +++|+|+||+|++ ...+....||+.|...+....+...+. ..+++++++||+|
T Consensus 2 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~ 79 (1394)
T TIGR00956 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKP 79 (1394)
T ss_pred CCCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeC
Confidence 35777888776666666666666 9999999999999 344566789999988876664433221 1234456789999
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcceEEEECCeeCCCCC--ccceEEEEcCCCCCCCCCCHHHHH
Q 000529 171 VSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL-KVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMTVRETL 247 (1441)
Q Consensus 171 vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~-~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1441)
+|+.++|||+++|+||||||||||||+|+|+.++.. ..+|+|.+||+++++.. .++.++||+|+|.|++++||+|||
T Consensus 80 vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l 159 (1394)
T TIGR00956 80 MDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETL 159 (1394)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHH
Confidence 999999999999999999999999999999974311 24999999999875432 235699999999999999999999
Q ss_pred HHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCCChh
Q 000529 248 AFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGG 327 (1441)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGG 327 (1441)
.|+++++.+..+.. ...+.+ ..+..++.+++.+||++++||.||+++.+|||||
T Consensus 160 ~f~~~~~~~~~~~~---~~~~~~-----------------------~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 213 (1394)
T TIGR00956 160 DFAARCKTPQNRPD---GVSREE-----------------------YAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGG 213 (1394)
T ss_pred HHHHHhCCCCCCCC---CCCHHH-----------------------HHHHHHHHHHHHcCcccccCceeCCCcCCCCCcc
Confidence 99988764211100 000111 1122356789999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEEc
Q 000529 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG 407 (1441)
Q Consensus 328 qrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~iv~~G 407 (1441)
|||||+||++|+.+|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||+++++++||+|++|++|+++|+|
T Consensus 214 erkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G 293 (1394)
T TIGR00956 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293 (1394)
T ss_pred cchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEEC
Confidence 99999999999999999999999999999999999999999887567889999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHHhchhhhhhHhhhcCccccc--
Q 000529 408 PRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKS-- 485 (1441)
Q Consensus 408 ~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 485 (1441)
+++++.+||+++||+||++.++|||+++++++.++ +++... +...+.+++++.++|+.++.++++.++++.+.++.
T Consensus 294 ~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~-e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 371 (1394)
T TIGR00956 294 PADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGY-EKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSE 371 (1394)
T ss_pred CHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccc-cccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999987543 222111 11123578899999999987776666554322110
Q ss_pred -------------ccccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCccc
Q 000529 486 -------------KSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVT 552 (1441)
Q Consensus 486 -------------~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~ 552 (1441)
...+.....+.|..++++|+++|++|+++.++||+..++.++++.+++|+++|++|++++.+ ..
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~---~~ 448 (1394)
T TIGR00956 372 SDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKN---TS 448 (1394)
T ss_pred hhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC---ch
Confidence 00011223456889999999999999999999999999999999999999999999977643 34
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccCCCCC
Q 000529 553 DGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPN 632 (1441)
Q Consensus 553 ~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~ 632 (1441)
+.+.+.|++||++++.++.++.++..++.+|++|+|||..++|++++|++|+.+.++|+.++.+++|++|+|||+|+.++
T Consensus 449 ~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~ 528 (1394)
T TIGR00956 449 DFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRT 528 (1394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCccc
Confidence 56778999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHhHcHHHHHHHHHH
Q 000529 633 AGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGIL 712 (1441)
Q Consensus 633 ~~rf~~~~l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~ 712 (1441)
+++||.+++++++...++.++++++++++++..+|+.+++++++++++|+||++++++||+||+|++|+||+.|++++++
T Consensus 529 ~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~ 608 (1394)
T TIGR00956 529 AGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLM 608 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCcccc--C----------------------CCccchhHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHH
Q 000529 713 ANEFLGHSWKKFT--P----------------------TSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFA 768 (1441)
Q Consensus 713 ~nef~~~~~~~~~--~----------------------~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~v~f~i~~~ 768 (1441)
.|||.+..+.|.. | +.+...|.++|+. .+.....|+|.+++++++++++|.++++
T Consensus 609 ~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~ 687 (1394)
T TIGR00956 609 VNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYI 687 (1394)
T ss_pred HhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999888741 1 0123478888885 3344567999999999999999999999
Q ss_pred HHHHhccccCCCccccccccccccccccccCcccccCCCCCCCCCcccCCCC--cccccccCCCCC-CCccccCCCceee
Q 000529 769 LALTFLNQFEKPRAVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSS--SLTEAEASHPKK-RGMVLPFEPYSLT 845 (1441)
Q Consensus 769 l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~ 845 (1441)
+++.|.++.......+.......... .+.....+....+.++.... .....+...... .....+.....++
T Consensus 688 l~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 761 (1394)
T TIGR00956 688 LLTEFNKGAKQKGEILVFRRGSLKRA------KKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFH 761 (1394)
T ss_pred HHHHhccccCCCCceEeeccccccch------hhcccccccccccccccccCCCCccccccccccccccccccCCCceEE
Confidence 99999885544332221111000000 00000000000011111000 000000000000 0000001123578
Q ss_pred EeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc-eEEEEEEEcCccCCc
Q 000529 846 FDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGDIRISGYPKKQ 924 (1441)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~ 924 (1441)
|+||+|+++.+ .+++.+|+|||++++|||++|||||||||||||||+|+|+.+++ ..+|+|.+||.+...
T Consensus 762 ~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~ 832 (1394)
T TIGR00956 762 WRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS 832 (1394)
T ss_pred EEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh
Confidence 99999987532 13467999999999999999999999999999999999987644 356999999998753
Q ss_pred cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHH
Q 000529 925 ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRL 1004 (1441)
Q Consensus 925 ~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv 1004 (1441)
.+++.+|||+|+|.+++.+||+|++.|++.++.+...+.++++++++++++.++|.+++|+.+|.++. +|||||||||
T Consensus 833 -~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl 910 (1394)
T TIGR00956 833 -SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRL 910 (1394)
T ss_pred -hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHH
Confidence 46778999999999999999999999999988776666667778899999999999999999987644 7999999999
Q ss_pred HHHHHHhhCCC-eeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCCC
Q 000529 1005 TIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1441)
Q Consensus 1005 ~iA~aL~~~p~-iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~~ 1083 (1441)
+||+||+.+|+ ||||||||||||+.++..+++.|++++++|+|||+|+|||+..+++.||++++|++||+++|+|+.++
T Consensus 911 ~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 99999999997 99999999999999999999999999888999999999999767889999999998889999999998
Q ss_pred cchhHHHHHHhCCCcccCCCCCCccccchhcccchhhhhccccHHHHHHhcHHHHHHHHHHHhhCCCCCCCC---CCccc
Q 000529 1084 HSCHLISYFEAIPGVEKIKDGYNPATWMLEVSASSQEVALGVDFCDIYKRSELYRRNKLLIEDLSKPAPGSK---DLHFA 1160 (1441)
Q Consensus 1084 ~~~~~~~yf~~~~~~~~~~~~~npad~~l~v~~~~~~~~~~~~~~~~~~~S~~~~~~~~~~~~~~~~~~~~~---~~~~~ 1160 (1441)
+++++++||+++ |.++||+++|||||+||+++...+.....||.+.|++|++++...+.++++..+..... +....
T Consensus 991 ~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1394)
T TIGR00956 991 NSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDAL 1069 (1394)
T ss_pred ccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccc
Confidence 889999999987 55579999999999999998654433446899999999998877666555433221111 11122
Q ss_pred ccCCccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccCCCCCCcHhhHHHHHhHHHHHHHHHhHHhhh
Q 000529 1161 TQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCI 1240 (1441)
Q Consensus 1161 ~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~ 1240 (1441)
++|+.|+|+|+++|++|+++++||||.|+.+|+++++++|+++|++||++++ ++++++|++|++|+++++.++.+ .
T Consensus 1070 ~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~~-~ 1145 (1394)
T TIGR00956 1070 SKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPLI-Q 1145 (1394)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 4689999999999999999999999999999999999999999999999986 47899999999999988877763 4
Q ss_pred hhhhhHHhhhHHH-HhhhcCCCCChHHHHHHHHHHHHHHHHHHHHhhheeeecccccccchhH-------HHHHHHHHHH
Q 000529 1241 SVQPVVFVERMVF-YREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAK-------FFWYIFYMYF 1312 (1441)
Q Consensus 1241 ~~~~~~~~er~vf-~rE~~~~~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~-------f~~~~~~~~~ 1312 (1441)
+++|.+..||.+| +|||++|+|++.+|++|++++|+|+.++++++|++|+|||+||++++.+ ||+|++++++
T Consensus 1146 ~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~ 1225 (1394)
T TIGR00956 1146 QYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTM 1225 (1394)
T ss_pred HhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHH
Confidence 5668888888886 8999999999999999999999999999999999999999999988866 9999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCCccccc-
Q 000529 1313 ALLFFTLYGMTAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIASQYGDVEDKIE- 1391 (1441)
Q Consensus 1313 ~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~~- 1391 (1441)
..++++++|+++++++||.++|+.+++++++++++||||++|+++||.||+|+||+||++|+++|++.|||+|.+..|.
T Consensus 1226 ~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~ 1305 (1394)
T TIGR00956 1226 FFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKV 1305 (1394)
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987773
Q ss_pred ---------CCCcHHHHH-------------------------------HhhcCCcccchhHHHHHHHHHHHHHHHHHHH
Q 000529 1392 ---------TGETVKHFL-------------------------------RDYYGFKHSFLGAVAGVLIAFAALFGILFPL 1431 (1441)
Q Consensus 1392 ---------~g~~~~~~~-------------------------------~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~ 1431 (1441)
+|+||++|+ ...+|+++++.|+|++++++|++++ +++++
T Consensus 1306 ~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~ 1384 (1394)
T TIGR00956 1306 KELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATV 1384 (1394)
T ss_pred cccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHH
Confidence 244555432 2356888999999999999999988 77888
Q ss_pred HHHhc
Q 000529 1432 GIKQF 1436 (1441)
Q Consensus 1432 ~l~~~ 1436 (1441)
++.+.
T Consensus 1385 ~l~~~ 1389 (1394)
T TIGR00956 1385 FFYWL 1389 (1394)
T ss_pred hhheE
Confidence 88765
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-94 Score=910.98 Aligned_cols=581 Identities=25% Similarity=0.412 Sum_probs=486.7
Q ss_pred CCceeeEeceEEEEeccchh----------------hccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhc
Q 000529 840 EPYSLTFDEVVYSVDMPQQM----------------KLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 903 (1441)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 903 (1441)
.+.+++|.|++|+++..... +.....++++.+|+|||++++|||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 36789999999998754210 01112334578999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEcCccCCccccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc
Q 000529 904 GRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983 (1441)
Q Consensus 904 g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~ 983 (1441)
|+.+++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|++.++.+...+.++++++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9876544689999999886532 345689999999999999999999999887766555566667789999999999999
Q ss_pred ccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhh
Q 000529 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1063 (1441)
Q Consensus 984 ~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~ 1063 (1441)
+|+++|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999987788999999999999999999999999999999999999999999999998889999999999987789999
Q ss_pred CeEEEEecCcEEEEEcCCCCcchhHHHHHHhCCCcccCCCCCCccccchhcccchhhhh------c---cccHHHHHHhc
Q 000529 1064 DELFLMKRGGREVYVGPLGHHSCHLISYFEAIPGVEKIKDGYNPATWMLEVSASSQEVA------L---GVDFCDIYKRS 1134 (1441)
Q Consensus 1064 D~vllL~~gG~~v~~G~~~~~~~~~~~yf~~~~~~~~~~~~~npad~~l~v~~~~~~~~------~---~~~~~~~~~~S 1134 (1441)
|++++|++ |+++|.|+. +++.+||+++| . +||+++|||||++|+++...+.. . .....+.|+++
T Consensus 275 D~iilL~~-G~iv~~G~~----~~~~~~f~~~G-~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESVG-F-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEecC-CcEEEECCH----HHHHHHHHHCC-C-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 99999984 899999997 68999999996 3 59999999999999987532100 0 01123445432
Q ss_pred HHHHHHHHHHHh--hCC-CCC-----CCCCCc-ccccCCccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Q 000529 1135 ELYRRNKLLIED--LSK-PAP-----GSKDLH-FATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGS 1205 (1441)
Q Consensus 1135 ~~~~~~~~~~~~--~~~-~~~-----~~~~~~-~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~ 1205 (1441)
. .+...+.++. ... +.+ ..+... ..+.+..+||+|+.+|++|++++ |||+.+..+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111111 011 000 001000 11235578999999999999988 99999999999999999999999
Q ss_pred hhccCCCCCCcHhhHHHHHhHHHHHHHHHhHHhhhhhhhhHHhhhHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 000529 1206 IFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLI 1285 (1441)
Q Consensus 1206 ~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~vf~rE~~~~~Y~~~~y~~a~~l~eiP~~~~~~~~ 1285 (1441)
+||+++ ..+++++.|++|++++++++.+++.+++.++.||+||+||+++|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999984 467999999999999999988888888999999999999999999999999999999999999999999
Q ss_pred hheeeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhh
Q 000529 1286 YSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWY 1365 (1441)
Q Consensus 1286 ~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~ 1365 (1441)
|++|+|||+||++++.+||+|+++++++.++++++|+++++++||..+|+.++++++.++++|+||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred hccCHHHHHHHHHHHHHhCCCcc-----cccCC----CcHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 000529 1366 YWANPIAWTLYGLIASQYGDVED-----KIETG----ETVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQF 1436 (1441)
Q Consensus 1366 ~~isp~~y~~~~l~~~~~~~~~~-----~~~~g----~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~ 1436 (1441)
+|+||++|++++++.|||++.+. .|+.. ...+.++. ..++++...|.++++|++++++|+++++++|++.
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE-EDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch-hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999987542 46311 11122332 2344455789999999999999999999999988
Q ss_pred cc
Q 000529 1437 NF 1438 (1441)
Q Consensus 1437 ~~ 1438 (1441)
||
T Consensus 658 ~~ 659 (659)
T PLN03211 658 KH 659 (659)
T ss_pred cC
Confidence 86
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-94 Score=911.18 Aligned_cols=564 Identities=30% Similarity=0.510 Sum_probs=499.4
Q ss_pred CceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc-eEEEEEEEcCccCCccccceEEEEeccCCCCCCCCC
Q 000529 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGDIRISGYPKKQETFARISGYCEQNDIHSPFVT 945 (1441)
Q Consensus 867 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 945 (1441)
+++.+|+|||++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999987543 358999999998765567788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC-CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCC
Q 000529 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1024 (1441)
Q Consensus 946 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~-~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTs 1024 (1441)
|+||+.|++.++.+...+.++++++++++++.+||.+++|+.+|+++ .++|||||||||+||+||+++|+||+|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999999887766777778889999999999999999999764 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCCCcchhHHHHHHhCCCcccCCCC
Q 000529 1025 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIPGVEKIKDG 1104 (1441)
Q Consensus 1025 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yf~~~~~~~~~~~~ 1104 (1441)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+ +|+++|.|+. +++.+||++++ .+||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~g--~~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDLG--HPCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHcC--CCCCCC
Confidence 9999999999999999998899999999999888999999999998 5899999997 67899999995 369999
Q ss_pred CCccccchhcccchhhhh-----ccccHHHHHHhcHHHHHHHHHHHhhCCCCCC---CCCCcccccCCccHHHHHHHHHH
Q 000529 1105 YNPATWMLEVSASSQEVA-----LGVDFCDIYKRSELYRRNKLLIEDLSKPAPG---SKDLHFATQYSQSAFSQFMACLW 1176 (1441)
Q Consensus 1105 ~npad~~l~v~~~~~~~~-----~~~~~~~~~~~S~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Q~~~l~~ 1176 (1441)
.|||||++|+++...+.. ...++.+.|++|+.+++..+.......+.++ .......++|..+++.|+..|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 999999999987543211 1134667787777666554433321111111 11111234678899999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccCCCCCCcHhhHHHHHhHHHHHHHHHhHHhhhhhhhhHHhhhHHHHhh
Q 000529 1177 KQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYRE 1256 (1441)
Q Consensus 1177 R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~vf~rE 1256 (1441)
|+++++||||.+..+|+++++++|+++|++||+++. ++++++++.|++|++++++++.+++.+.+.++.||++|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999975 46789999999999999999988888889999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHhhheeeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 000529 1257 VAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPTHHIASI 1336 (1441)
Q Consensus 1257 ~~~~~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~ 1336 (1441)
+++|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|+++++++.++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCCcc-cccCC-------CcHHHHHHhhcCCcc
Q 000529 1337 VSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIASQYGDVED-KIETG-------ETVKHFLRDYYGFKH 1408 (1441)
Q Consensus 1337 ~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~-~~~~g-------~~~~~~~~~~~g~~~ 1408 (1441)
++++++.++++|+||+++.++||+||+|++|+||++|++++++.|||++.+. +|..+ .+ ++++.+.||++.
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~-g~~~l~~~g~~~ 584 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSS-GEVILETLSFRN 584 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcC-hHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999998775 56421 12 466667899999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 000529 1409 SFLGAVAGVLIAFAALFGILFPLGIKQFNFQRR 1441 (1441)
Q Consensus 1409 ~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1441 (1441)
++.|.+++++++++++|+++++++||+....+|
T Consensus 585 ~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 585 ADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999998766655
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-94 Score=900.12 Aligned_cols=575 Identities=33% Similarity=0.574 Sum_probs=503.5
Q ss_pred CceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc-eEEEEEEEcC
Q 000529 841 PYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGDIRISG 919 (1441)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g 919 (1441)
+..+.|+|+++..+.+.. ..+++|+|||++++|||++|||||||||||||||+|+|+..++ ..+|+|.+||
T Consensus 23 ~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG 94 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG 94 (613)
T ss_pred cceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC
Confidence 457899999988765421 3578999999999999999999999999999999999998764 7899999999
Q ss_pred ccCCccccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000529 920 YPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1441)
Q Consensus 920 ~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 999 (1441)
++...+.+++.+|||+|+|.+.|++||+|+|.|+|.+|+|...+.++++++|+++++.+||.+++|+++|+++.+|+|||
T Consensus 95 ~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGG 174 (613)
T KOG0061|consen 95 RPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGG 174 (613)
T ss_pred ccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccc
Confidence 88877888999999999999999999999999999999999888999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1000 qrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
|||||+||.+|++||+||||||||||||+.++..++++|+++|++|+|||||+|||+.+++++||++++|.+ |+++|+|
T Consensus 175 ErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~G 253 (613)
T KOG0061|consen 175 ERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYSG 253 (613)
T ss_pred hhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 7999999
Q ss_pred CCCCcchhHHHHHHhCCCcccCCCCCCccccchhcccch--h-hhhc---cccHHHHHH-hcHHHHHHHHHHHhhCCCCC
Q 000529 1080 PLGHHSCHLISYFEAIPGVEKIKDGYNPATWMLEVSASS--Q-EVAL---GVDFCDIYK-RSELYRRNKLLIEDLSKPAP 1152 (1441)
Q Consensus 1080 ~~~~~~~~~~~yf~~~~~~~~~~~~~npad~~l~v~~~~--~-~~~~---~~~~~~~~~-~S~~~~~~~~~~~~~~~~~~ 1152 (1441)
+. +++.+||+++| .+||+++|||||.+|+.+.. . +... .....+.++ .....+......+.+..
T Consensus 254 ~~----~~~~~ff~~~G--~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 324 (613)
T KOG0061|consen 254 SP----RELLEFFSSLG--FPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLST--- 324 (613)
T ss_pred CH----HHHHHHHHhCC--CCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhccc---
Confidence 98 68899999996 35999999999999998842 1 1100 000111111 11111110000011111
Q ss_pred CCCCCcccccCCccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccCCCCCCcHhhHHHHHhHHHHHHH
Q 000529 1153 GSKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALI 1232 (1441)
Q Consensus 1153 ~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~ 1232 (1441)
.+. .+.....+||.|+..+++|.+++.+|||.+...|+++.+++|+++|++||+++.+ ..+++++.|++|+.+.
T Consensus 325 -~~~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~---~~~~~~~~g~~~~~~~ 398 (613)
T KOG0061|consen 325 -SKK--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND---AKGIQNRLGLFFFILS 398 (613)
T ss_pred -ccc--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHHHHH
Confidence 011 1111278999999999999999999999999999999999999999999999753 5667799999999999
Q ss_pred HHhHHhhhhhhhhHHhhhHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHhhheeeecccccccchhHHHHHHHHHHH
Q 000529 1233 FLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYF 1312 (1441)
Q Consensus 1233 ~~~~~~~~~~~~~~~~er~vf~rE~~~~~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~ 1312 (1441)
++.+..+...++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|++.+++
T Consensus 399 ~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~ 478 (613)
T KOG0061|consen 399 FMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILL 478 (613)
T ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 99888888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCCccccc-
Q 000529 1313 ALLFFTLYGMTAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIASQYGDVEDKIE- 1391 (1441)
Q Consensus 1313 ~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~~- 1391 (1441)
..++++++|++++++.||...|..+++++...+++|+||+++.+.||.||+|++|+|+++|++||++.|||++....|.
T Consensus 479 ~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~ 558 (613)
T KOG0061|consen 479 SSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFL 558 (613)
T ss_pred HHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997333342
Q ss_pred C-----CCcHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 000529 1392 T-----GETVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNFQR 1440 (1441)
Q Consensus 1392 ~-----g~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~ 1440 (1441)
. ..+..+++ .+++++.++.|.++.++++++++|++++++++++....+
T Consensus 559 ~~~~~~~~~~~~~l-~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 559 SGNLCCESTGEDVL-KQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred CcCCcccccHHHHH-HhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 1 23455655 568999999999999999999999999999999765443
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-91 Score=945.18 Aligned_cols=561 Identities=24% Similarity=0.417 Sum_probs=494.7
Q ss_pred CceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCC--ceEEEEEEEcCccCCc--cccceEEEEeccCCCCCC
Q 000529 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGDIRISGYPKKQ--ETFARISGYCEQNDIHSP 942 (1441)
Q Consensus 867 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~ 942 (1441)
.++++|+|||+.++|||+++|+||||||||||||+|+|+..+ .+.+|+|.+||.+..+ ..+++.++|++|+|.++|
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 456799999999999999999999999999999999998632 2468999999987643 234567999999999999
Q ss_pred CCCHHHHHHHHHHhcCCC----CCCHHHHHH-HHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCee
Q 000529 943 FVTVYESLFYSAWLRLPP----EVNSETRKM-FIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSII 1017 (1441)
Q Consensus 943 ~lTv~E~l~f~~~lr~~~----~~~~~~~~~-~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iL 1017 (1441)
.+||+|++.|++.++.+. ..+.++..+ .++++++.+||.+++|+++|+..+++|||||||||+||++|+.+|+||
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999999887653 223333333 357789999999999999999888999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCCCcchhHHHHHHhCC
Q 000529 1018 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIP 1096 (1441)
Q Consensus 1018 lLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yf~~~~ 1096 (1441)
+|||||+|||+.++..+++.|++++++ |+|||+++|||+.++++.||++++|++ |+++|+|+. +++.+||+++|
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG 306 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMG 306 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcC
Confidence 999999999999999999999999874 999999999998789999999999985 899999997 68899999996
Q ss_pred CcccCCCCCCccccchhcccchhhh----------hccccHHHHHHhcHHHHHHHHHHHhhCCCC---------------
Q 000529 1097 GVEKIKDGYNPATWMLEVSASSQEV----------ALGVDFCDIYKRSELYRRNKLLIEDLSKPA--------------- 1151 (1441)
Q Consensus 1097 ~~~~~~~~~npad~~l~v~~~~~~~----------~~~~~~~~~~~~S~~~~~~~~~~~~~~~~~--------------- 1151 (1441)
. +||+++|||||++|+++++.+. ....+|++.|++|+.+++..+.+++.....
T Consensus 307 -~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1394)
T TIGR00956 307 -F-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVA 384 (1394)
T ss_pred -C-CCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHh
Confidence 3 6999999999999998764311 123579999999998887665554321110
Q ss_pred CCCCCCcccccCCccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccCCCCCCcHhhHHHHHhHHHHHH
Q 000529 1152 PGSKDLHFATQYSQSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTAL 1231 (1441)
Q Consensus 1152 ~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~ 1231 (1441)
..++.....+.|..|+|+|+++|++|+++.+||||.++.+|+++++++|+++|++||++++ ++++++++.|++|+++
T Consensus 385 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~ 461 (1394)
T TIGR00956 385 KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAI 461 (1394)
T ss_pred hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHH
Confidence 0011112234688999999999999999999999999999999999999999999999985 4578999999999999
Q ss_pred HHHhHHhhhhhhhhHHhhhHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHhhheeeecccccccchhHHHHHHHHHH
Q 000529 1232 IFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMY 1311 (1441)
Q Consensus 1232 ~~~~~~~~~~~~~~~~~er~vf~rE~~~~~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~ 1311 (1441)
++.++.++..+ +.+..||+||+|||.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++++||.|+++++
T Consensus 462 ~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~ 540 (1394)
T TIGR00956 462 LFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILF 540 (1394)
T ss_pred HHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHH
Confidence 99999887665 55668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCCccccc
Q 000529 1312 FALLFFTLYGMTAVAVTPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIASQYGDVEDKIE 1391 (1441)
Q Consensus 1312 ~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~~ 1391 (1441)
++.++++++++++++++||..+|+.++++++.++++|+||++|+++||+||+|++|+||++|+++|++.|||++.+.+|.
T Consensus 541 l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~ 620 (1394)
T TIGR00956 541 ICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECS 620 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887763
Q ss_pred ----C---------------------C---CcHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000529 1392 ----T---------------------G---ETVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNF 1438 (1441)
Q Consensus 1392 ----~---------------------g---~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1438 (1441)
. | .++.+|+...||++++++|+|++|+++|+++|++++++++++++.
T Consensus 621 ~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 621 QYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred ccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0 1 146789988899999999999999999999999999999999873
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-90 Score=928.71 Aligned_cols=591 Identities=23% Similarity=0.396 Sum_probs=499.5
Q ss_pred cCCCceeeEeceEEEEec-------cch----------hh-ccC---CCCCceeeeeceeEEEeCCeEEEEeccCCCChH
Q 000529 838 PFEPYSLTFDEVVYSVDM-------PQQ----------MK-LQG---VPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 896 (1441)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~-------~~~----------~~-~~~---~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKS 896 (1441)
+.+...++|+|+++.... |.- +. ..+ .++.++.+|+|||+.++|||+++|+||||||||
T Consensus 126 ~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKS 205 (1470)
T PLN03140 126 KLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKT 205 (1470)
T ss_pred CCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHH
Confidence 344567999999887652 110 00 001 112356799999999999999999999999999
Q ss_pred HHHHhhcCCCCC-ceEEEEEEEcCccCCccccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCC-------CCHHHH-
Q 000529 897 TLMDVLAGRKTG-GYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPE-------VNSETR- 967 (1441)
Q Consensus 897 TLl~~L~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~-------~~~~~~- 967 (1441)
||||+|+|+.++ ...+|+|.+||.+..+...++.++||+|+|.|++.+||+|+|.|++.++.+.. ...+++
T Consensus 206 TLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~ 285 (1470)
T PLN03140 206 TLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKD 285 (1470)
T ss_pred HHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHh
Confidence 999999998653 24589999999987544446779999999999999999999999988764221 111111
Q ss_pred -----------------------HHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCC
Q 000529 968 -----------------------KMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1024 (1441)
Q Consensus 968 -----------------------~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTs 1024 (1441)
+..++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++|||||||+
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTs 365 (1470)
T PLN03140 286 AGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEIST 365 (1470)
T ss_pred ccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCc
Confidence 123578999999999999999998889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCCCcchhHHHHHHhCCCcccCCC
Q 000529 1025 GLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIPGVEKIKD 1103 (1441)
Q Consensus 1025 gLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yf~~~~~~~~~~~ 1103 (1441)
|||+.++..+++.|+++++ .|+|||+++|||+.+++++||++++|++ |+++|+||. +++.+||+++| . +||+
T Consensus 366 GLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~----~~~~~yF~~lG-f-~cP~ 438 (1470)
T PLN03140 366 GLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPR----DHILEFFESCG-F-KCPE 438 (1470)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCH----HHHHHHHHHcC-C-CCCC
Confidence 9999999999999999986 4899999999998889999999999985 899999997 68899999996 3 6999
Q ss_pred CCCccccchhcccchhh-h-----------hccccHHHHHHhcHHHHHHHHHHHhhCCCCCCCCCCcccccCCccHHHHH
Q 000529 1104 GYNPATWMLEVSASSQE-V-----------ALGVDFCDIYKRSELYRRNKLLIEDLSKPAPGSKDLHFATQYSQSAFSQF 1171 (1441)
Q Consensus 1104 ~~npad~~l~v~~~~~~-~-----------~~~~~~~~~~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ 1171 (1441)
++|||||++|+++.... . ....+|++.|++|+.+++..+.++.........+.....++|..+++.|+
T Consensus 439 ~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~ 518 (1470)
T PLN03140 439 RKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELL 518 (1470)
T ss_pred CCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHH
Confidence 99999999999986432 1 11246899999998887765544321111111111112346889999999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccCCCCCCcHhhHHHHHhHHHHHHHHHhHHhhhhhhhhHHhhhH
Q 000529 1172 MACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERM 1251 (1441)
Q Consensus 1172 ~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~ 1251 (1441)
+.|++|+++..||||.++..|+++.+++|+++|++||+++.+..+..+.+...|++|++++++.+.++.. ++.+..||+
T Consensus 519 ~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~-l~~~~~~r~ 597 (1470)
T PLN03140 519 KACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAE-LALMIQRLP 597 (1470)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccc
Confidence 9999999999999999999999999999999999999998654445567788999999998888776544 577889999
Q ss_pred HHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHhhheeeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 000529 1252 VFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAVTPTH 1331 (1441)
Q Consensus 1252 vf~rE~~~~~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~ 1331 (1441)
||+|||++++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||.|+++++++.++++++++++++++|+.
T Consensus 598 vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~ 677 (1470)
T PLN03140 598 VFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTM 677 (1470)
T ss_pred hhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCCccc---cc-CCC-cHHHHHHhhcCC
Q 000529 1332 HIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIASQYGDVEDK---IE-TGE-TVKHFLRDYYGF 1406 (1441)
Q Consensus 1332 ~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~---~~-~g~-~~~~~~~~~~g~ 1406 (1441)
.+|+.++++++.++++|+||+||+++||+||+|++|+||++|+++|+++|||.+.... |. ... ++.+|+ +.+|+
T Consensus 678 ~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L-~~~g~ 756 (1470)
T PLN03140 678 IIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVL-NIFDV 756 (1470)
T ss_pred HHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHH-HhcCc
Confidence 9999999999999999999999999999999999999999999999999999765432 21 122 455555 78899
Q ss_pred ccc--chhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000529 1407 KHS--FLGAVAGVLIAFAALFGILFPLGIKQFN 1437 (1441)
Q Consensus 1407 ~~~--~~~~~~~il~~~~~~f~~~~~~~l~~~~ 1437 (1441)
..+ +.|+++++|++|+++|++++++++++++
T Consensus 757 ~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 757 FTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred CccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 754 6699999999999999999999999987
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-81 Score=785.23 Aligned_cols=583 Identities=31% Similarity=0.495 Sum_probs=492.2
Q ss_pred CCcceEEEeeeEEEEEeecccccCCChhhhhhHHHHHHhhhhhcCCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHH
Q 000529 114 LPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTT 193 (1441)
Q Consensus 114 ~p~v~v~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKST 193 (1441)
...++++|+|+++++... .+ ..+++|+||||+++|||++|||||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----------------------------~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK----------------------------SK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC----------------------------CC-ccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 346789999999997532 11 4578999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCcceEEEECCeeCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhc
Q 000529 194 LLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAA 273 (1441)
Q Consensus 194 LL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~ 273 (1441)
||++|+|+.....+++|+|++||++.+....++.+|||.|+|.++|++||+|||.|+++++-+. +++
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~-------~~~------ 138 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPS-------SLS------ 138 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCC-------CCC------
Confidence 9999999998766789999999988776666789999999999999999999999999987432 112
Q ss_pred CCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCC
Q 000529 274 GIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTG 353 (1441)
Q Consensus 274 ~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsg 353 (1441)
.++.+.+++++++.|||.+|+||++|+...|||||||||||+||..|+.+|+|||+||||||
T Consensus 139 ------------------~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 139 ------------------KEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred ------------------HHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 23345689999999999999999999988899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHH
Q 000529 354 LDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1441)
Q Consensus 354 LDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 433 (1441)
||+.++.++++.|+++|+. |+|+|++||||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999986 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCch--hhhhhhhccCCCCcccCHHHHHHHHHhchhhhhhHhhhcCcccccccccccccCcccccchHHHHHHHHHH
Q 000529 434 QEVTSKK--DQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSR 511 (1441)
Q Consensus 434 ~~v~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 511 (1441)
.++.+.. .++.... .......+.++......+............ .........++|.|+..+++|
T Consensus 280 l~l~s~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~q~~~L~~R 346 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEA--------VRIAKLINKFSQTDNLKKTLEALEKSLSTS-----KKVEIGTSPSWWTQFKILLKR 346 (613)
T ss_pred HHHHccCCCchhHHhH--------HHHHHHhhhccccchhhhhHHHHhhhcccc-----cccccccCCcHHHHHHHHHHH
Confidence 9987743 1110000 000011111110000000000000000000 000001167899999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCccccchhhhHHHHHHHHHHHHHHHH-HHHHhhhhchhHHHhh
Q 000529 512 ELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFA-EISMTIVKLPVFYKQR 590 (1441)
Q Consensus 512 ~~~~~~R~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~-~~~~~~~~~~vf~kqr 590 (1441)
.+....|++.....|.+|.+.+++++|++|++.+.... ......|++|+.+.+..+..+. .++.+..++++|.||+
T Consensus 347 ~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~---~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~ 423 (613)
T KOG0061|consen 347 SLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAK---GIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRET 423 (613)
T ss_pred HhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchH---HHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999998754332 3346788888888888776655 6888999999999999
Q ss_pred hcCCcChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Q 000529 591 DFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTF 670 (1441)
Q Consensus 591 ~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~~l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~ 670 (1441)
..++|+.++|++++.+.++|+.++.+++|++++|||+|+.++..+|+.+.++.++..+++.+++.+++++.++...|.++
T Consensus 424 ~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~ 503 (613)
T KOG0061|consen 424 SSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSL 503 (613)
T ss_pred hcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHhHcHHHHHHHHHHHhhhcCCCCccccC--CCccchhHHhhhcccccccchh
Q 000529 671 GSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTP--TSTESLGVQVLESREFFAHAYW 748 (1441)
Q Consensus 671 ~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~~~~~~~--~~~~~~g~~~l~~~~~~~~~~~ 748 (1441)
++++++.+++++||+++.+.||.||+|+.|+|+.+|++++++.|||.+....|... ..+...|.++++..++... .
T Consensus 504 ~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 581 (613)
T KOG0061|consen 504 GPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDS--S 581 (613)
T ss_pred HHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCccc--c
Confidence 99999999999999999999999999999999999999999999999744444332 3456678888888887543 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000529 749 YWLGLGALFGFILLLNVGFALALTFLN 775 (1441)
Q Consensus 749 ~w~~~~~l~~~~v~f~i~~~l~L~~~~ 775 (1441)
.|.++.++++++++|.++++++|++..
T Consensus 582 ~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 582 FWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 678999999999999999999998764
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-83 Score=801.93 Aligned_cols=562 Identities=25% Similarity=0.464 Sum_probs=499.8
Q ss_pred CceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc-eEEEEEEEcCccCCccccceEEEEeccCCCCCCCCC
Q 000529 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGDIRISGYPKKQETFARISGYCEQNDIHSPFVT 945 (1441)
Q Consensus 867 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 945 (1441)
.+.++|+|+|+.++||+++.++||+||||||||++|+|..+.. ...|+|.+||++.+....++.++|+.|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3467999999999999999999999999999999999965432 235789999998876444788999999999999999
Q ss_pred HHHHHHHHHHhcCCCC----CCHHHHH-HHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEe
Q 000529 946 VYESLFYSAWLRLPPE----VNSETRK-MFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020 (1441)
Q Consensus 946 v~E~l~f~~~lr~~~~----~~~~~~~-~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLD 1020 (1441)
|+|+|.|+++++.+.. .++.++. +..+.+++.+||++++|++||+...||+||||||||+||.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999998732 2222222 2577899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCCCcchhHHHHHHhCCCcc
Q 000529 1021 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIPGVE 1099 (1441)
Q Consensus 1021 EPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yf~~~~~~~ 1099 (1441)
|+|+|||+.++.++.+.||++++. +.|+++++|||+.+++++||+|++|.+ |+++|+||. +++++||+++|.
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~Gf-- 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMGF-- 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcCc--
Confidence 999999999999999999999864 899999999999999999999999986 899999998 688999999863
Q ss_pred cCCCCCCccccchhcccchhhh-----------hcc-ccHHHHHHhcHHHHHHHHHHHhhCCCCCCCCCCcccccCCccH
Q 000529 1100 KIKDGYNPATWMLEVSASSQEV-----------ALG-VDFCDIYKRSELYRRNKLLIEDLSKPAPGSKDLHFATQYSQSA 1167 (1441)
Q Consensus 1100 ~~~~~~npad~~l~v~~~~~~~-----------~~~-~~~~~~~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1167 (1441)
.||+..++|||+.++++...+. ... .+|++.|.+|+.+++....++........++.....++|..|+
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 5999999999999999832111 111 5799999999999877644332211122233333456899999
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccCCCCCCcHhhHHHHHhHHHHHHHHHhHHhhhhhhhhHH
Q 000529 1168 FSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLGGKTEKRQDLSNAMGSMFTALIFLGFEYCISVQPVVF 1247 (1441)
Q Consensus 1168 ~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 1247 (1441)
|.|++.|+.|.++.+.||..|...++++.+++|+++|++|++... .+..+.+.+.|++||++++..++.+..+ +...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHH
Confidence 999999999999999999999999999999999999999999872 5667899999999999999888877665 5667
Q ss_pred hhhHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHhhheeeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000529 1248 VERMVFYREVAAGMFSGIPWALAQIMIEIPYVFVQSLIYSSIVYAMMSFDWTAAKFFWYIFYMYFALLFFTLYGMTAVAV 1327 (1441)
Q Consensus 1248 ~er~vf~rE~~~~~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~ 1327 (1441)
+.|+||+|||...+|++++|.++..+.++|+.++.+++|.+|+||++||.+++++||.|+++++++..++.++.++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCCccccc-CC-------------
Q 000529 1328 TPTHHIASIVSTLFFGLWLLFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLIASQYGDVEDKIE-TG------------- 1393 (1441)
Q Consensus 1328 ~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~~-~g------------- 1393 (1441)
+|+...|+.++++.+....+++||+||.++||+||+|++|+||+.|++++|+.|||++.+.+|+ .|
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999988885 11
Q ss_pred --------C---cHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000529 1394 --------E---TVKHFLRDYYGFKHSFLGAVAGVLIAFAALFGILFPLGIKQFNF 1438 (1441)
Q Consensus 1394 --------~---~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1438 (1441)
. .+.+|++..|++++.|.|++++|++||.++|.+++.+++.|+|.
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p 731 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKP 731 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCc
Confidence 1 25678888899999999999999999999999999999999984
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-80 Score=779.86 Aligned_cols=609 Identities=21% Similarity=0.350 Sum_probs=470.6
Q ss_pred CCcceEEEeeeEEEEEeecccccCCChhhhhhHHHHHHhhhhhcCCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHH
Q 000529 114 LPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTT 193 (1441)
Q Consensus 114 ~p~v~v~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKST 193 (1441)
.+.++++|.|+++.+.......+... ....+...-...++..+ ..++++|+|+|++++|||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~-~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKPKISDETRQ-IQERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccc----ccccccccccccccccc-CCCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 45799999999999754210111100 00000000000011111 13467999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCcceEEEECCeeCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhc
Q 000529 194 LLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAA 273 (1441)
Q Consensus 194 LL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~ 273 (1441)
||++|+|+++|+ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.... ..
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~------ 174 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LT------ 174 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CC------
Confidence 999999998874 3589999999987532 23569999999999999999999999876542100 00
Q ss_pred CCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCC
Q 000529 274 GIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTG 353 (1441)
Q Consensus 274 ~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsg 353 (1441)
.++...+++++++.+||++++||.+|+...++|||||||||+||++|+.+|++|+|||||+|
T Consensus 175 ------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 175 ------------------KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred ------------------HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 11123457889999999999999999988999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHH
Q 000529 354 LDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1441)
Q Consensus 354 LDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 433 (1441)
||+.++.++++.|+++++ .++|+++++||+..+++++||+|++|++|+++|+|+.+++.+||+++||+||++.|||||+
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 999999999999999875 5778888888888789999999999999999999999999999999999999999999999
Q ss_pred HhhcCchhhhhhhhccCCCCcccCHHHHHHHHHhchhhhhhHhhhcC---cccccc-----cccc-cccCcccccchHHH
Q 000529 434 QEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQT---PFDKSK-----SHRA-ALTTKVYGVGKREL 504 (1441)
Q Consensus 434 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~-~~~~~~~~~~~~~~ 504 (1441)
.++++...+.+.....+.+ ...+++.+.|++.. .+...+.... +....+ ..+. ......+..++|.|
T Consensus 316 ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHcCccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9998754321100000001 11233334443211 1111111000 000000 0000 00112245689999
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCccccchhhhHHHHHHHHHHHH-HHHHHHHHhhhhc
Q 000529 505 LKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIVMPLF-SGFAEISMTIVKL 583 (1441)
Q Consensus 505 ~~~~~~R~~~~~~R~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~-~~~~~~~~~~~~~ 583 (1441)
++++++|.++. +|+......|+++.+++|+++|++|++.+ ..+.+...|++||.+++..+ ..+..++.+..++
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888 78888888999999999999999999753 23467778999999877655 5567888888999
Q ss_pred hhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000529 584 PVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRN 663 (1441)
Q Consensus 584 ~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~~l~~~~~~~~~~~l~~~i~a~~~~ 663 (1441)
++|+|||..++|++++|++|+.+.++|+.++.+++|++|+|||+|+.+++++|+.+++++++...++++++.++++++++
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHhHcHHHHHHHHHHHhhhcCCC-----CccccCCCccchhHHhhh
Q 000529 664 LVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHS-----WKKFTPTSTESLGVQVLE 738 (1441)
Q Consensus 664 ~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~-----~~~~~~~~~~~~g~~~l~ 738 (1441)
+.+|+.+++++++++++|+||+++ +||+||+|++|+||++|++++++.|||.+.+ +.|..+......+..++.
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~ 623 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE 623 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch
Confidence 999999999999999999999997 7999999999999999999999999997654 234321110000111222
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000529 739 SREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLN 775 (1441)
Q Consensus 739 ~~~~~~~~~~~w~~~~~l~~~~v~f~i~~~l~L~~~~ 775 (1441)
...+. ....|.++++|++++++|+++++++|++.+
T Consensus 624 ~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 624 EDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22221 234788999999999999999999997654
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-80 Score=785.59 Aligned_cols=570 Identities=25% Similarity=0.401 Sum_probs=481.5
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCccceEEEEcCCCCCCCCC
Q 000529 162 KKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEM 241 (1441)
Q Consensus 162 ~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1441)
+.++++|+|+|++++|||+++|+|||||||||||++|+|+.+++...+|+|.+||++++....++.++||+|+|.+++++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 44678999999999999999999999999999999999998876556899999999886544467899999999999999
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccc-
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM- 320 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~- 320 (1441)
||+|||.|+++++.... .. .++...+++++++.+||++++||.||++.
T Consensus 115 TV~e~l~f~~~~~~~~~-------~~------------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRR-------VT------------------------KKEKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCC-------CC------------------------HHHHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 99999999988763210 01 11223457889999999999999999863
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~ 400 (1441)
.+||||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++ .+.|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 789999999999999999999999999999999999999999999999875 5789999999999999999999999999
Q ss_pred CeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHHhchhhhhhHhhhcC
Q 000529 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQT 480 (1441)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1441)
|+++|+|+++++.+||+++|++||++.+|+||+.++++....... ......+++.+.|+.+...++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-------ESRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-------chHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 999999999999999999999999999999999998764322110 0112234556666665544444333221
Q ss_pred cccccc---cccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCccccchhh
Q 000529 481 PFDKSK---SHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIY 557 (1441)
Q Consensus 481 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~ 557 (1441)
...++. ..........|..+++.|++.+++|.++..+||+..+..++++.+++++++|++|++.+.+ ..+....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~---~~~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT---QKGVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC---HHHHHHH
Confidence 111100 0001112245678899999999999999999999999999999999999999999976543 2345666
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHhhhhchhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccCCCCChhHH
Q 000529 558 AGALFFTIVMPLFSGF-AEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRF 636 (1441)
Q Consensus 558 ~g~lf~~~~~~~~~~~-~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf 636 (1441)
.|++|+.++...+.++ ..+..+..++++|+|||..++|++++|++++.+.++|+.++.+++|++|+|||+|+.+++++|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 8889999888777764 456677789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHhHcHHHHHHHHHHHhhh
Q 000529 637 FKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEF 716 (1441)
Q Consensus 637 ~~~~l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef 716 (1441)
|.++++++++..++.++++++++++++..+|..+++++++++++|+||+++.++||+||+|++|+||++|++++++.|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC-ccccCC---CccchhHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000529 717 LGHSW-KKFTPT---STESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLN 775 (1441)
Q Consensus 717 ~~~~~-~~~~~~---~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~v~f~i~~~l~L~~~~ 775 (1441)
.+..+ .|...+ .+...|.++++.+++... ++|.++++++++.++|.++++++|++..
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~~ 613 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIRI 613 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98775 443211 123458899998887543 5688999999999999999999998753
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-75 Score=736.30 Aligned_cols=790 Identities=22% Similarity=0.266 Sum_probs=424.7
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCC
Q 000529 159 PSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHD 235 (1441)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d 235 (1441)
|++ ++.+||+|+|+.|++|+.++|+|||||||||++++|.++++|+ +|+|.++|.++.+++. +.++|.|+|+|
T Consensus 361 PsR-pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QeP 436 (1228)
T KOG0055|consen 361 PSR-PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEP 436 (1228)
T ss_pred CCC-CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeech
Confidence 444 4678999999999999999999999999999999999999998 9999999999988765 46899999999
Q ss_pred CCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccc
Q 000529 236 NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTM 315 (1441)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1441)
.+| ..||+|||.|+..- ...+...+++ +.++..--+..|++..||.
T Consensus 437 vlF-~~tI~eNI~~G~~d-------------------------at~~~i~~a~--------k~ana~~fi~~lp~g~~T~ 482 (1228)
T KOG0055|consen 437 VLF-ATTIRENIRYGKPD-------------------------ATREEIEEAA--------KAANAHDFILKLPDGYDTL 482 (1228)
T ss_pred hhh-cccHHHHHhcCCCc-------------------------ccHHHHHHHH--------HHccHHHHHHhhHHhhccc
Confidence 665 57999999997421 1111111111 1111222344688899999
Q ss_pred cccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
||+. +-.|||||||||+|||||+.+|+||+||||||+||+.+...+.+.|.+.. .++|+|+ +.|....+-+ +|+|
T Consensus 483 vge~-g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTiv-VaHRLStIrn-aD~I 557 (1228)
T KOG0055|consen 483 VGER-GVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIV-VAHRLSTIRN-ADKI 557 (1228)
T ss_pred ccCC-CCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEE-Eeeehhhhhc-cCEE
Confidence 9973 23399999999999999999999999999999999999999999998753 4566666 5566666655 9999
Q ss_pred EEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHH--HhhcCchhhhhhhhccCCCCcccCHHHHHHHHHhchhhhh
Q 000529 396 ILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL--QEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQK 473 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl--~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1441)
++|++|+||+.|+++|+... ..-.++.. |+....++. ..+... ..++.....+.+.....
T Consensus 558 ~v~~~G~IvE~G~h~ELi~~----------~G~Y~~lv~~Q~~~~~~~~-~~~~~~-------~~~~~~~s~~~s~~~~~ 619 (1228)
T KOG0055|consen 558 AVMEEGKIVEQGTHDELIAL----------GGIYSSLVRLQELEKAAED-EEEEES-------LKEERSRSLKSSSSSPS 619 (1228)
T ss_pred EEEECCEEEEecCHHHHHhc----------cchHHHHHHHHhhhhhhhc-cccccc-------hhhhhhhcccccccccc
Confidence 99999999999999999852 11112222 222211110 000000 00000000000000000
Q ss_pred hHh-----hh--cCcccccccccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHH-------HHHHHHHH
Q 000529 474 LSD-----EL--QTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIG-------SITLVYMT 539 (1441)
Q Consensus 474 ~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~-------~~~li~gt 539 (1441)
... .. ..+.++....+ ........+++ |-+...+.++.+.+.-.+..+ +.+++++.
T Consensus 620 ~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~s~~--------~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~ 689 (1228)
T KOG0055|consen 620 LSRGSNRSNLLSVKPEGEDPEEP--VSEEDEKVSFW--------RIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQ 689 (1228)
T ss_pred ccCCccccccccccccccccccc--cccccccccHH--------HHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 000 00 00000000000 00000122233 333333333333333322222 22223332
Q ss_pred hhhcccCCC-CccccchhhhHHHHHHHHHHHH--HHHHHHHHhhhhchhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHH
Q 000529 540 LFFRTKMHK-DSVTDGGIYAGALFFTIVMPLF--SGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEP 616 (1441)
Q Consensus 540 ~f~~~~~~~-~~~~~~~~~~g~lf~~~~~~~~--~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~ 616 (1441)
++--..... +..........++|..+....+ +.+......+..-..-.|-|.. +-+.+++.++.+|+-
T Consensus 690 ~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~---------~F~~ll~qd~~wFD~ 760 (1228)
T KOG0055|consen 690 VLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSM---------MFRALLRQEVGWFDD 760 (1228)
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHcCCCcccCC
Confidence 221111111 1111111112222222211110 0000000000000000011110 011222222222210
Q ss_pred HHHHHHHhhccCCCCChhHHHHHHH-----HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH------Hhccc
Q 000529 617 AVWVFLSYYVIGYDPNAGRFFKQYL-----LLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLA------LGGFV 685 (1441)
Q Consensus 617 ~i~~~i~Y~~~g~~~~~~rf~~~~l-----~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l------~~Gf~ 685 (1441)
..+.++...++. +--++..-...+...+++++..+.+|..++|-+.++.+. ++++.
T Consensus 761 -------------~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~ 827 (1228)
T KOG0055|consen 761 -------------PENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYL 827 (1228)
T ss_pred -------------CccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011133333331 111222233334444444555555565555544443333 22221
Q ss_pred ccccchhhHHHHHHhHcH---HHHHHHHHHHhhhcCCCCccccCCCccchhHHhhhcccc-----c--ccchhHHHHHHH
Q 000529 686 LSREEVKKWWKWAYWSSP---VMYAQNGILANEFLGHSWKKFTPTSTESLGVQVLESREF-----F--AHAYWYWLGLGA 755 (1441)
Q Consensus 686 i~~~~ip~~~~W~~~isP---~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~-----~--~~~~~~w~~~~~ 755 (1441)
.. +++.-.+. -.|.-.+-+.+|...+-.... ..+....+++.+.- . ......|.+++.
T Consensus 828 ~~--------~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~----al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f 895 (1228)
T KOG0055|consen 828 QK--------KFLKGFSKDDKKAYEEASKIAIEAVSNIRTVA----ALCAEEKFMELYKEELEKPRKSSFKRGLISGLGF 895 (1228)
T ss_pred HH--------HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 00000000 011112222222221110000 00001111111000 0 001122333322
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCcccccccccccc-----ccccccCcccccCCCCCCCCCcccCCCCcccccccCCC
Q 000529 756 LFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDE-----QDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHP 830 (1441)
Q Consensus 756 l~~~~v~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1441)
-+...++| +.++++++|...+-.............- ............|+...+..+.......-...+..+..
T Consensus 896 ~~sqs~~~-~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~ 974 (1228)
T KOG0055|consen 896 GFSQSLLF-FVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPD 974 (1228)
T ss_pred HHHHHHHH-HHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 22222221 2233333333221111111100000000 00000011111111111000000000000000000000
Q ss_pred CCCCccccCCCceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCce
Q 000529 831 KKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 910 (1441)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~ 910 (1441)
...+...+.....++|+||+++|+.. ++.++|+|+|++|++|+.+||+|||||||||.+.+|-+..+ +
T Consensus 975 ~~~~~~~~~~~G~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p 1042 (1228)
T KOG0055|consen 975 STSGGKLPNVKGDIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--P 1042 (1228)
T ss_pred CCCCCccccceeEEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--C
Confidence 01122223334579999999999864 45689999999999999999999999999999999987654 4
Q ss_pred EEEEEEEcCccCCc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-------CC
Q 000529 911 ITGDIRISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV-------EL 980 (1441)
Q Consensus 911 ~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-------~L 980 (1441)
..|.|.+||.+++. ..+|+++|.|.|+|.++. -|++||+.|+. . +.+.++ +.++++.. +|
T Consensus 1043 ~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~----~-~vs~~e----Ii~Aak~ANaH~FI~sL 1112 (1228)
T KOG0055|consen 1043 DAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS----E-EVSEEE----IIEAAKLANAHNFISSL 1112 (1228)
T ss_pred CCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC----C-CCCHHH----HHHHHHHhhhHHHHhcC
Confidence 68999999999865 346789999999999985 69999999981 1 133333 33444433 45
Q ss_pred cccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHH
Q 000529 981 KPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1060 (1441)
Q Consensus 981 ~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~ 1060 (1441)
.+-.|+.+|..|. +||||||||++|||||++||+||||||.||+||+++.+.|+++|.+.. .|||.|+++|++| ..
T Consensus 1113 P~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TI 1188 (1228)
T KOG0055|consen 1113 PQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TI 1188 (1228)
T ss_pred cCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hh
Confidence 5667899998765 599999999999999999999999999999999999999999999875 5899999999986 46
Q ss_pred HhhCeEEEEecCcEEEEEcCC
Q 000529 1061 EAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1061 ~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
+.+|.|.|+++ |++++.|+-
T Consensus 1189 qnaD~I~Vi~~-G~VvE~GtH 1208 (1228)
T KOG0055|consen 1189 QNADVIAVLKN-GKVVEQGTH 1208 (1228)
T ss_pred hcCCEEEEEEC-CEEEecccH
Confidence 88999999985 899999985
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-73 Score=731.12 Aligned_cols=775 Identities=22% Similarity=0.257 Sum_probs=457.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCccceEEEEcCCCCCCCCCCHH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1441)
.+.|+|||+.|++|++++|+||.|||||+||.+|.|+++.. +|+|.++| .+|||+|++ |+.+.|||
T Consensus 534 ~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~p-WI~ngTvr 599 (1381)
T KOG0054|consen 534 EPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQP-WIQNGTVR 599 (1381)
T ss_pred cccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEecccc-HhhCCcHH
Confidence 34899999999999999999999999999999999999876 99999999 599999987 55678999
Q ss_pred HHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCC
Q 000529 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1441)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 324 (1441)
|||.|+..+. ..||+.+.++|.+++|.+++|++| .|.||+ .+-.|
T Consensus 600 eNILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD--------------------------------~TeIGE-rGinL 644 (1381)
T KOG0054|consen 600 ENILFGSPYD--EERYDKVIKACALKKDLEILPFGD--------------------------------LTEIGE-RGINL 644 (1381)
T ss_pred HhhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCC--------------------------------cceecC-CccCC
Confidence 9999998775 378999999999999999999998 499997 44459
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHH-HHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000529 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1441)
Q Consensus 325 SGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~-~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~i 403 (1441)
||||||||++|||++++++|++||+|.|++|+++..+|++ +++.+ .+++++|.++| .-+..+.+|.|++|++|+|
T Consensus 645 SGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~---L~~KT~ILVTH-ql~~L~~ad~Iivl~~G~I 720 (1381)
T KOG0054|consen 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL---LRGKTVILVTH-QLQFLPHADQIIVLKDGKI 720 (1381)
T ss_pred cHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh---hcCCEEEEEeC-chhhhhhCCEEEEecCCeE
Confidence 9999999999999999999999999999999999999994 67553 23445555666 5678889999999999999
Q ss_pred EEEcCHHHHHH---HHHhcCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHHhchhhhhhHhhhcC
Q 000529 404 VYQGPRELVLE---FFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQT 480 (1441)
Q Consensus 404 v~~G~~~~~~~---~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1441)
+..|+++|+.+ .|+++ +.+....++.+ ...+.+.......+. +. +.........+. ..
T Consensus 721 ~~~Gty~el~~~~~~~~~l-------------~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~ 781 (1381)
T KOG0054|consen 721 VESGTYEELLKSGGDFAEL-------------AHEEESEQEEE---ASEKDLESGESSRES-ES-RSLESLSSEEEK-SK 781 (1381)
T ss_pred ecccCHHHHHhcchhHHHH-------------hhccchhhccc---cccccccccccccch-hh-hhhhhhcccccc-cc
Confidence 99999999983 23322 00000000000 000000000000000 00 000000000000 00
Q ss_pred cccccccccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHH-H---HHHhhhcccCCCC------
Q 000529 481 PFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIF-KLIQIGSITL-V---YMTLFFRTKMHKD------ 549 (1441)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~-~~~~~~~~~l-i---~gt~f~~~~~~~~------ 549 (1441)
.................+.-.|...+. +...........+ -+.......+ + ++.-+| ++....
T Consensus 782 ~~~~~~~~~~~~ee~~~G~v~~~vY~~-----Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W-~~~~~~~~~~~~ 855 (1381)
T KOG0054|consen 782 DEKEEEDKLVQEEERETGKVSWSVYKK-----YIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYW-TDDGEDNGTTTV 855 (1381)
T ss_pred cccchhhHHHHHHHHhcCEeeHHHHHH-----HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccccccCC
Confidence 000000000000000011111111111 1100001111110 1111111111 1 122222 221111
Q ss_pred -ccccchhhhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccC
Q 000529 550 -SVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIG 628 (1441)
Q Consensus 550 -~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g 628 (1441)
.......|..+.+...+..++.++....+.+.....++.+ +-+.+++.|++||++
T Consensus 856 ~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~------------ml~~Ilrapm~FFdt------------ 911 (1381)
T KOG0054|consen 856 STSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDK------------LLNSILRAPMSFFDT------------ 911 (1381)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHhCcchhcCC------------
Confidence 1112223333333333444444444433444333333333 556788999999875
Q ss_pred CCCChhHHHHHH---------HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhc---c-cccccchhhHH
Q 000529 629 YDPNAGRFFKQY---------LLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGG---F-VLSREEVKKWW 695 (1441)
Q Consensus 629 ~~~~~~rf~~~~---------l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l~~G---f-~i~~~~ip~~~ 695 (1441)
...||.++++ .+.+.+..+...+..+++.++-...+...+..+++.+.+++.. | .-...++++.-
T Consensus 912 --TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLe 989 (1381)
T KOG0054|consen 912 --TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLE 989 (1381)
T ss_pred --CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 3467777766 4666666666666666666654444443333333333333221 1 11222222211
Q ss_pred HHHHhHcHHHHHHHHHHHhhhcCCCCccccCCCccchhHHhhhc-----c---cccccchhHHHHHHHHHHHHHHHHHHH
Q 000529 696 KWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQVLES-----R---EFFAHAYWYWLGLGALFGFILLLNVGF 767 (1441)
Q Consensus 696 ~W~~~isP~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~-----~---~~~~~~~~~w~~~~~l~~~~v~f~i~~ 767 (1441)
. .-.||++-.+...+..--.-+.|.... ..-...... + -+.....|+.+.+-.+..+++++..++
T Consensus 990 s--itRSPi~sh~~Etl~GlsTIRAf~~~~-----rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~ 1062 (1381)
T KOG0054|consen 990 S--ITRSPIYSHFSETLQGLSTIRAFGKEE-----RFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALF 1062 (1381)
T ss_pred h--cccchHHHhHHHHhcCcceeeeccccH-----HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 114677666555544333333332210 000000000 0 011123344444443333333332222
Q ss_pred HHHHHhccccCCCccccccccccccccccccCcccccCCCCCCCCCcccCCCCcccccccCCCCCC---CccccCCCcee
Q 000529 768 ALALTFLNQFEKPRAVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKR---GMVLPFEPYSL 844 (1441)
Q Consensus 768 ~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 844 (1441)
++...-. . ..+..+..--.+.........+.++...+.|..+.+.+|..++...+.++++.... ....|. ...+
T Consensus 1063 ~vl~~~~-~-~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~-~G~I 1139 (1381)
T KOG0054|consen 1063 AVLLPSG-L-ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPS-KGEI 1139 (1381)
T ss_pred HHHccCC-C-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCC-CCeE
Confidence 2221110 0 00110000000000000000112222233333344444443332212221111111 111221 2379
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
+|+|++.+|.. +-..+|||||++|+|||.+||+|++|||||||+++|.+... +.+|+|.|||.++.+
T Consensus 1140 ~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgvdI~~ 1206 (1381)
T KOG0054|consen 1140 EFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGVDISK 1206 (1381)
T ss_pred EEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCeeccc
Confidence 99998877642 23469999999999999999999999999999999998765 357999999999865
Q ss_pred ---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCC
Q 000529 925 ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS-------LVGLPGVN 994 (1441)
Q Consensus 925 ---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-------~vg~~~~~ 994 (1441)
.+.|++++.+||||.++. -|+|.|| |+..+..++.++++||..+|.+...+ .+.+ +..
T Consensus 1207 igL~dLRsrlsIIPQdPvLFs-GTvR~NL----------DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e-gG~ 1274 (1381)
T KOG0054|consen 1207 IGLHDLRSRLSIIPQDPVLFS-GTVRFNL----------DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSE-GGE 1274 (1381)
T ss_pred ccHHHHHhcCeeeCCCCceec-Ccccccc----------CcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecC-CCc
Confidence 457889999999999886 4888876 44555667779999999998765433 3332 456
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 995 ~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
++|.||||.+|+||||+++++||+|||+|+++|++|...|+++||+-.+ ++|||++.|+.+. + -.+|||+||++ |+
T Consensus 1275 N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~T-V-md~DrVlVld~-G~ 1350 (1381)
T KOG0054|consen 1275 NFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLNT-V-MDSDRVLVLDA-GR 1350 (1381)
T ss_pred cCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccch-h-hhcCeEEEeeC-Ce
Confidence 7999999999999999999999999999999999999999999999775 7999999999873 4 45899999986 89
Q ss_pred EEEEcCCC
Q 000529 1075 EVYVGPLG 1082 (1441)
Q Consensus 1075 ~v~~G~~~ 1082 (1441)
++++|++.
T Consensus 1351 v~EfdsP~ 1358 (1381)
T KOG0054|consen 1351 VVEFDSPA 1358 (1381)
T ss_pred EeecCChH
Confidence 99999983
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-70 Score=737.17 Aligned_cols=804 Identities=20% Similarity=0.280 Sum_probs=487.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC--ccceEEEEcCCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1441)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+|
T Consensus 943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LT 1019 (2272)
T TIGR01257 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLT 1019 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCC
Confidence 56999999999999999999999999999999999999998 999999999985321 2467999999999999999
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1441)
|+|||.|.++.++... ++.+..++++++.+||++..|+.+++
T Consensus 1020 V~E~L~f~~~lkg~~~----------------------------------~~~~~~v~~lL~~vgL~~~~~~~~~~---- 1061 (2272)
T TIGR01257 1020 VAEHILFYAQLKGRSW----------------------------------EEAQLEMEAMLEDTGLHHKRNEEAQD---- 1061 (2272)
T ss_pred HHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCChhh----
Confidence 9999999877654210 01123467789999999999988876
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 GLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~ 402 (1441)
|||||||||+||+||+++|++++|||||+|||+.++..+++.|+++. . +++|+.++|+.+++..++|||++|++|+
T Consensus 1062 -LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~--~-g~TIIltTHdmdea~~laDrI~iL~~Gk 1137 (2272)
T TIGR01257 1062 -LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR--S-GRTIIMSTHHMDEADLLGDRIAIISQGR 1137 (2272)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--C-CCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999872 3 5667778999999999999999999999
Q ss_pred EEEEcCHHHHHHHHHhcCCC-------------------------------CCCCC-----------C---hhhHHHhhc
Q 000529 403 IVYQGPRELVLEFFESMGFK-------------------------------CPKRK-----------G---VADFLQEVT 437 (1441)
Q Consensus 403 iv~~G~~~~~~~~f~~~G~~-------------------------------~p~~~-----------~---~adfl~~v~ 437 (1441)
+++.|+++++.+.|. .||. ||... + +.++++...
T Consensus 1138 L~~~Gs~~~Lk~~~g-~gy~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~i 1216 (2272)
T TIGR01257 1138 LYCSGTPLFLKNCFG-TGFYLTLVRKMKNIQSQRGGCEGTCSCTSKGFSTRCPARVDEITPEQVLDGDVNELMDLVYHHV 1216 (2272)
T ss_pred EEEecCHHHHHHhcC-CcEEEEEEecccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHhC
Confidence 999999999987653 2431 11000 0 111222111
Q ss_pred Cchhhhhhh---hccCCCCcccCHHHHHHHHHhchhh------------h--------hhHhhhcC--------------
Q 000529 438 SKKDQEQYW---AHKDRPYRFVKVQEFVAAFQSFHVG------------Q--------KLSDELQT-------------- 480 (1441)
Q Consensus 438 s~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~------------~--------~~~~~~~~-------------- 480 (1441)
......+.. ..-..|........|...|+.-+.. . ++.++...
T Consensus 1217 P~a~l~~~~g~el~y~LP~~~~~~~~f~~lf~~Le~~~~~lgi~sygis~tTLEeVFlkv~~~~~~~~~~~~~~~~~~~~ 1296 (2272)
T TIGR01257 1217 PEAKLVECIGQELIFLLPNKNFKQRAYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEDADSGSLFAGGAQQKREN 1296 (2272)
T ss_pred CCcEEEeccCCEEEEEecccccccchHHHHHHHHHhhHhhCCCceEEeecCCHHHHHHHhhhhccccccccccccccccc
Confidence 000000000 0000011111111233333221100 0 00000000
Q ss_pred ---------ccccccc-cc-------c--------------cccC---cccccchHHHHHHHHHHHHHHhhcchHHHHHH
Q 000529 481 ---------PFDKSKS-HR-------A--------------ALTT---KVYGVGKRELLKACTSRELLLMKRNSFVYIFK 526 (1441)
Q Consensus 481 ---------~~~~~~~-~~-------~--------------~~~~---~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~~ 526 (1441)
+.++... .. . .... ..-..-++.|+++++.+.++..+|++....+.
T Consensus 1297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~L~~qQf~All~KR~~~~~Rd~k~~~~q 1376 (2272)
T TIGR01257 1297 ANLRHPCSGPTEKAGQTPQASHTCSPGQPAAHPEGQPPPEPEDPGVPLNTGARLILQHVQALLVKRFQHTIRSHKDFLAQ 1376 (2272)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 0000000 00 0 0000 00001256789999999999999999887766
Q ss_pred HHHHHHH---HHHHHHh----------------h------hccc------------------------------------
Q 000529 527 LIQIGSI---TLVYMTL----------------F------FRTK------------------------------------ 545 (1441)
Q Consensus 527 ~~~~~~~---~li~gt~----------------f------~~~~------------------------------------ 545 (1441)
++.-+++ ++++..+ | +...
T Consensus 1377 illPi~fv~lal~~~~~~~~~~~~p~l~Ls~~~Y~~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 1456 (2272)
T TIGR01257 1377 IVLPATFVFLALMLSIIIPPFGEYPALTLHPWMYGQQYTFFSMDEPNSEHLEVLADVLLNKPGFGNRCLKEEWLPEYPCG 1456 (2272)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCCeecchhhccCcceeccccccccccccchhhhhhccccccccccccccccccccc
Confidence 5543322 2221111 0 0000
Q ss_pred C------C----------------------------------------------C--------C---ccc--cc------
Q 000529 546 M------H----------------------------------------------K--------D---SVT--DG------ 554 (1441)
Q Consensus 546 ~------~----------------------------------------------~--------~---~~~--~~------ 554 (1441)
. + + + ... +.
T Consensus 1457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~n~sdyll~ 1536 (2272)
T TIGR01257 1457 NSTPWKTPSVSPNITHLFQKQKWTAAHPSPSCRCSTREKLTMLPECPEGAGGLPPPQRTQRSTEILQDLTDRNISDFLVK 1536 (2272)
T ss_pred ccccccccchhHHHHHHHhhccccccccccccccccccccccccccccccccCCCcccccccchhhhhhcccchHHHHhh
Confidence 0 0 0 0 000 00
Q ss_pred ------------------hhh-------------------hHH-------------------------------------
Q 000529 555 ------------------GIY-------------------AGA------------------------------------- 560 (1441)
Q Consensus 555 ------------------~~~-------------------~g~------------------------------------- 560 (1441)
..| .++
T Consensus 1537 ~~~~~~~~~~~~~~~~~~~ry~~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1616 (2272)
T TIGR01257 1537 TYPALIRSSLKSKFWVNEQRYGGISIGGKLPAIPITGEALVGFLSDLGQMMNVSGGPVTREASKEMPDFLKHLETEDNIK 1616 (2272)
T ss_pred hhhhhhccccccccccccccccccccccccccccccchhhhhhhhhcccccccccccccccccchhhhhhhccccCcceE
Confidence 000 000
Q ss_pred ------------HHHHHHHHHH-------------------------------------------------HHHHHHHHh
Q 000529 561 ------------LFFTIVMPLF-------------------------------------------------SGFAEISMT 579 (1441)
Q Consensus 561 ------------lf~~~~~~~~-------------------------------------------------~~~~~~~~~ 579 (1441)
++..++..++ .+++.++..
T Consensus 1617 vwfNn~~~Hs~p~~lN~l~NaiLr~~~~~~~~~~~~~I~v~N~Plp~t~~~~~~~~~~~~~~~~~iai~ii~~~sfi~as 1696 (2272)
T TIGR01257 1617 VWFNNKGWHALVSFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPAS 1696 (2272)
T ss_pred EEEcCCcccHHHHHHHHHHHHHHHHhcccccCCccceEEEEecCCCCchhhhhhhhhcccchhHHHHHHHHHHHHHHHHH
Confidence 0000000000 001111111
Q ss_pred hhhchhHHHhhhcC-----C---cChhhHHHHHHHHHhhHHHHHHHHHHHHHhhc--cCCCCChhHHHHHHHHHHHHHHH
Q 000529 580 IVKLPVFYKQRDFK-----F---FPPWAYAIPSWILKIPISFLEPAVWVFLSYYV--IGYDPNAGRFFKQYLLLLAFNQM 649 (1441)
Q Consensus 580 ~~~~~vf~kqr~~~-----~---y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~--~g~~~~~~rf~~~~l~~~~~~~~ 649 (1441)
+.-.+| +||..+ + .++.+|+++.++.++...++..++..++++.. -++. +...+...++++++...+
T Consensus 1697 fv~~~V--~ER~skaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~-~~~~l~~~~lll~lyG~a 1773 (2272)
T TIGR01257 1697 FVLYLI--QERVNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYT-SPENLPALVALLMLYGWA 1773 (2272)
T ss_pred Hheeee--hHHhhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhc-CcchHHHHHHHHHHHHHH
Confidence 111111 222211 1 26789999999999888777766655444322 1222 223444455566666777
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH---HHHHHHhcccc----c---ccchhhHHHHHHhHcHHHHHHHHHH---Hhhh
Q 000529 650 ISGLFRFLGAIGRNLVVAYTFGSFAV---LVLLALGGFVL----S---REEVKKWWKWAYWSSPVMYAQNGIL---ANEF 716 (1441)
Q Consensus 650 ~~~l~~~i~a~~~~~~vA~~~~~~~~---l~~~l~~Gf~i----~---~~~ip~~~~W~~~isP~~y~~~al~---~nef 716 (1441)
+..+.++++-++.+...|+....++. .+...+..|++ + ...+...+.|++.+.|..---+++. .++.
T Consensus 1774 ~ip~tYl~SflF~~~~~A~~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~lg~gl~~l~~~~~ 1853 (2272)
T TIGR01257 1774 VIPMMYPASFLFDVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQA 1853 (2272)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCchhhhHHHHHHHHHhHH
Confidence 77777777777666555543322111 11111111211 1 1223457788888888654444433 1211
Q ss_pred cCCCCccccCCCccchhHHhhhcccccccchhHHHHHH----HHHHHHHH-HHHHHHHHHHhccccCCCccccccccccc
Q 000529 717 LGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLG----ALFGFILL-LNVGFALALTFLNQFEKPRAVITEEFESD 791 (1441)
Q Consensus 717 ~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~----~l~~~~v~-f~i~~~l~L~~~~~~~~~~~~~~~~~~~~ 791 (1441)
....+.. .+.. .....|-|-..| +++...++ |.++..+-..+... ....... .
T Consensus 1854 ~~~~~~~--------~~~~-------~~~~~~~~~~~g~~ll~m~~~~iv~flLl~~ie~~~~~~----~~~~~~~--~- 1911 (2272)
T TIGR01257 1854 VTDVYAQ--------FGEE-------HSANPFQWDLIGKNLVAMAVEGVVYFLLTLLIQHHFFLS----RWIAEPA--K- 1911 (2272)
T ss_pred HHHHHHh--------hccc-------ccCCccchhhccHHHHHHHHHHHHHHHHHHHHHhhhhhh----hhccccC--c-
Confidence 1000000 0000 001122222221 11111111 11111111111100 0000000 0
Q ss_pred cccccccCcccccCCCCCCCCCcccCCCCcccccccCCCCCCCccccCCCceeeEeceEEEEeccchhhccCCCCCceee
Q 000529 792 EQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVL 871 (1441)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 871 (1441)
. + .... ..+ ...+...-. .. ......+.++|+++.++. +++.+
T Consensus 1912 -------~-----~----~~~e-----D~D-V~~Er~rV~-~~---~~~~~~L~v~nLsK~Y~~-----------~~~~a 1954 (2272)
T TIGR01257 1912 -------E-----P----IFDE-----DDD-VAEERQRII-SG---GNKTDILRLNELTKVYSG-----------TSSPA 1954 (2272)
T ss_pred -------C-----c----CCCc-----hhH-HHHHHHHHh-cc---CCCCceEEEEEEEEEECC-----------CCceE
Confidence 0 0 0000 000 000000000 00 001124788999877631 12579
Q ss_pred eeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc--cccceEEEEeccCCCCCCCCCHHHH
Q 000529 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ--ETFARISGYCEQNDIHSPFVTVYES 949 (1441)
Q Consensus 872 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv~E~ 949 (1441)
|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+|||+|++.+++.+||+|+
T Consensus 1955 L~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~ 2032 (2272)
T TIGR01257 1955 VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREH 2032 (2272)
T ss_pred EEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHH
Confidence 9999999999999999999999999999999998763 47999999988642 2245679999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHH
Q 000529 950 LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029 (1441)
Q Consensus 950 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~ 1029 (1441)
+.+.+.++. .+.++.++.++++++.++|.+..|+.++ .|||||||||+||+||+.+|+||||||||+|||+.
T Consensus 2033 L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~ 2104 (2272)
T TIGR01257 2033 LYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQ 2104 (2272)
T ss_pred HHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHH
Confidence 998776653 2334445678899999999998888765 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCCCcchhHHHHH
Q 000529 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYF 1092 (1441)
Q Consensus 1030 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yf 1092 (1441)
+++.+++.|++++++|+|||+|||+++ ++..+|||+++|.+ |+++..|+. +++..-|
T Consensus 2105 sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs~----q~Lk~~~ 2161 (2272)
T TIGR01257 2105 ARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGTI----QHLKSKF 2161 (2272)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH----HHHHHHh
Confidence 999999999999878999999999986 67788999999985 899999987 4454444
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-68 Score=725.16 Aligned_cols=211 Identities=24% Similarity=0.321 Sum_probs=177.8
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++|+||+++|+. +..++|+|||++|+|||.+||+|+||||||||+++|.|...+ .+|+|.+||.++
T Consensus 1237 ~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~dI 1303 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCDI 1303 (1622)
T ss_pred cEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEec
Confidence 6999999998842 123699999999999999999999999999999999998663 479999999987
Q ss_pred Cc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-------RQSLVGLPG 992 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 992 (1441)
.+ ..+|+.+++|||++.++.. |++|||.+.. .. .++.++++++..++.+. .|+.+|..|
T Consensus 1304 ~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~----tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G 1372 (1622)
T PLN03130 1304 SKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EH----NDADLWESLERAHLKDVIRRNSLGLDAEVSEAG 1372 (1622)
T ss_pred ccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CC----CHHHHHHHHHHcCcHHHHHhCccccCccccCCC
Confidence 64 4567889999999999875 9999996431 11 23446778888777543 355666543
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 993 ~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
.+||||||||++|||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1373 -~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~- 1447 (1622)
T PLN03130 1373 -ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA- 1447 (1622)
T ss_pred -CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC-
Confidence 4699999999999999999999999999999999999999999999985 4899999999986 4567999999985
Q ss_pred cEEEEEcCCC
Q 000529 1073 GREVYVGPLG 1082 (1441)
Q Consensus 1073 G~~v~~G~~~ 1082 (1441)
|++++.|++.
T Consensus 1448 G~IvE~Gt~~ 1457 (1622)
T PLN03130 1448 GRVVEFDTPE 1457 (1622)
T ss_pred CEEEEeCCHH
Confidence 8999999874
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-67 Score=718.82 Aligned_cols=210 Identities=22% Similarity=0.291 Sum_probs=177.0
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++|+||+++++. +.+++|+|||++|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.++
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~di 1300 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCDV 1300 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEEh
Confidence 5999999998842 224699999999999999999999999999999999998663 479999999987
Q ss_pred Cc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-------RQSLVGLPG 992 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 992 (1441)
.+ ..+|+.++||||++.+++. |++|||.+.. +.+ ++.++++++..++.+. .|+.+|..|
T Consensus 1301 ~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G 1369 (1495)
T PLN03232 1301 AKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEGG 1369 (1495)
T ss_pred hhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCCC
Confidence 54 4567889999999999874 9999996421 122 3346778888877653 355566543
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 993 ~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
.+||||||||++|||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1370 -~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~- 1444 (1495)
T PLN03232 1370 -ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS- 1444 (1495)
T ss_pred -CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 4699999999999999999999999999999999999999999999875 4899999999985 4567999999985
Q ss_pred cEEEEEcCC
Q 000529 1073 GREVYVGPL 1081 (1441)
Q Consensus 1073 G~~v~~G~~ 1081 (1441)
|++++.|+.
T Consensus 1445 G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 GQVLEYDSP 1453 (1495)
T ss_pred CEEEEECCH
Confidence 899999986
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-66 Score=611.71 Aligned_cols=474 Identities=27% Similarity=0.344 Sum_probs=363.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCcceEEEECCeeCCCCCc-------cceEEEEcCCC-
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS-LKVSGRVTYNGHNMDEFVP-------ERTAAYISQHD- 235 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~-~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 235 (1441)
.++++||||++.|||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.++||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 57999999999999999999999999999999999999886 4568999999998755433 26799999996
Q ss_pred -CCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccc
Q 000529 236 -NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADT 314 (1441)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1441)
.+-|-+||.+.|.-..+..+... .++...++.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~---------------------------------~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGS---------------------------------RAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcccc---------------------------------HHHHHHHHHHHHHHcCCCChhhh
Confidence 45677899999887665543211 22334567789999999987765
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
+.+.+.|||||||||.||+||+.+|++|++|||||+||..++.+|++.|+++.+ ..++.++.++|+..-+.++|||
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~-e~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQR-ELGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHH-HcCcEEEEEcCCHHHHHHhcCe
Confidence 345566999999999999999999999999999999999999999999999875 5678888999999999999999
Q ss_pred EEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHHhchhhhhh
Q 000529 395 IILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKL 474 (1441)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1441)
|+||.+|++|+.|+++++.+. |. .||.. .+
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~--------p~-------------------------hpYT~-----------------~L 254 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSN--------PQ-------------------------HPYTR-----------------GL 254 (539)
T ss_pred EEEEECCEEEEecCHHHHHhc--------cC-------------------------CcccH-----------------HH
Confidence 999999999999999998641 11 01100 00
Q ss_pred HhhhcCcccccccccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCccccc
Q 000529 475 SDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDG 554 (1441)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~ 554 (1441)
.+. .|. ....
T Consensus 255 l~a--~p~---------------------------------------------------------------~~~~----- 264 (539)
T COG1123 255 LAA--VPR---------------------------------------------------------------LGDE----- 264 (539)
T ss_pred Hhh--CCC---------------------------------------------------------------cccc-----
Confidence 000 000 0000
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccCCCCChh
Q 000529 555 GIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAG 634 (1441)
Q Consensus 555 ~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~ 634 (1441)
T Consensus 265 -------------------------------------------------------------------------------- 264 (539)
T COG1123 265 -------------------------------------------------------------------------------- 264 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHhHcHHHHHHHHHHHh
Q 000529 635 RFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILAN 714 (1441)
Q Consensus 635 rf~~~~l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~n 714 (1441)
T Consensus 265 -------------------------------------------------------------------------------- 264 (539)
T COG1123 265 -------------------------------------------------------------------------------- 264 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCCCccccCCCccchhHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccc
Q 000529 715 EFLGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQD 794 (1441)
Q Consensus 715 ef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~v~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~ 794 (1441)
...
T Consensus 265 -------~~~---------------------------------------------------------------------- 267 (539)
T COG1123 265 -------KII---------------------------------------------------------------------- 267 (539)
T ss_pred -------ccc----------------------------------------------------------------------
Confidence 000
Q ss_pred ccccCcccccCCCCCCCCCcccCCCCcccccccCCCCCCCccccCCCceeeEeceEEEEeccchhhccCCCCCceeeeec
Q 000529 795 NRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNG 874 (1441)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 874 (1441)
. ... . .. .+ ...-++++|++..+..+.... +...+...+++|
T Consensus 268 ----~------------~~~-----~------~~--------~~-~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~ 309 (539)
T COG1123 268 ----R------------LPR-----R------GP--------LR-AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDD 309 (539)
T ss_pred ----c------------ccc-----c------cc--------cc-cCceeEeeeeeeeeccccccc--cccccceeeeee
Confidence 0 000 0 00 00 001244455544443322110 000134579999
Q ss_pred eeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC--Cc---cccceEEEEeccCC--CCCCCCCHH
Q 000529 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK--KQ---ETFARISGYCEQND--IHSPFVTVY 947 (1441)
Q Consensus 875 vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~--~~---~~~~~~~gyv~Q~~--~~~~~lTv~ 947 (1441)
|||++++||++||+|+||||||||.++|+|...+ ..|.|.++|.+. +. ...++.+-+++|++ .+.|.+||+
T Consensus 310 VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~ 387 (539)
T COG1123 310 VSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVG 387 (539)
T ss_pred eeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHH
Confidence 9999999999999999999999999999998764 479999999762 11 22445667777765 467999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCC
Q 000529 948 ESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026 (1441)
Q Consensus 948 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgL 1026 (1441)
+.+.-....... ....++++++.++++.+||.+ ..+++ +.+||||||||++|||||+.+|++|++|||||.|
T Consensus 388 ~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaL 460 (539)
T COG1123 388 DILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSAL 460 (539)
T ss_pred HHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCcccc
Confidence 999766554432 225666778999999999986 45555 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1027 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1027 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
|+..+..|.++|+++.++ |.|.|++|||.+. +...|||+++|.+ |++|..||.
T Consensus 461 Dvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v-V~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 461 DVSVQAQVLNLLKDLQEELGLTYLFISHDLAV-VRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH-HHhhCceEEEEEC-CeEEEeCCH
Confidence 999999999999999866 9999999999874 7788999999985 899999975
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-65 Score=693.91 Aligned_cols=216 Identities=19% Similarity=0.309 Sum_probs=178.6
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc-------------
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------- 909 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~------------- 909 (1441)
.++|+||+|+|+.. ++.++|+|+||+|+||+.+||+||||||||||+++|.|...+.
T Consensus 1165 ~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 69999999998531 2346999999999999999999999999999999999975531
Q ss_pred ---------------------------------------eEEEEEEEcCccCCc---cccceEEEEeccCCCCCCCCCHH
Q 000529 910 ---------------------------------------YITGDIRISGYPKKQ---ETFARISGYCEQNDIHSPFVTVY 947 (1441)
Q Consensus 910 ---------------------------------------~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~ 947 (1441)
+.+|+|.+||.++.+ ..+++.+|||+|++.+++ .|++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHH
Confidence 147999999998754 456888999999999885 7999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEe
Q 000529 948 ESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-------LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020 (1441)
Q Consensus 948 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLD 1020 (1441)
||+.|+. + +.+. +.++++++..++.+ -.|+.+|..| ..||||||||++|||||+++|+||+||
T Consensus 1314 eNI~~g~----~-~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1314 ENIKFGK----E-DATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9998862 1 2232 33666777766544 3477888644 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCcHHHHHhhCeEEEEecC---cE-EEEEcCC
Q 000529 1021 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG---GR-EVYVGPL 1081 (1441)
Q Consensus 1021 EPTsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~i~~~~D~vllL~~g---G~-~v~~G~~ 1081 (1441)
||||+||+++.+.|++.|+++. .+++|+|+++|+++ ..+.+|+|++|++| |+ ++..|+.
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 9999999999999999999986 35899999999975 56789999999863 67 4578875
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-65 Score=704.29 Aligned_cols=210 Identities=19% Similarity=0.240 Sum_probs=177.1
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++|+||+++++. +...+|+|||++|+|||++||+|+||||||||+++|.|... +.+|+|.+||.++
T Consensus 1284 ~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI 1350 (1522)
T TIGR00957 1284 RVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNI 1350 (1522)
T ss_pred cEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEc
Confidence 6999999998853 12359999999999999999999999999999999999765 3479999999987
Q ss_pred Cc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-------RQSLVGLPG 992 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 992 (1441)
.+ ..+|+.++||||++.+++. |++|||... .+.+ ++.++++++..++.+. .|+.+|..|
T Consensus 1351 ~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~------~~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G 1419 (1522)
T TIGR00957 1351 AKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPF------SQYS----DEEVWWALELAHLKTFVSALPDKLDHECAEGG 1419 (1522)
T ss_pred cccCHHHHHhcCeEECCCCcccCc-cHHHHcCcc------cCCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCCC
Confidence 64 4567889999999999975 999999521 0122 3347788888887653 355666533
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 993 ~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
.+||||||||++|||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1420 -~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~- 1494 (1522)
T TIGR00957 1420 -ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK- 1494 (1522)
T ss_pred -CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 4699999999999999999999999999999999999999999999875 4799999999975 4667999999985
Q ss_pred cEEEEEcCC
Q 000529 1073 GREVYVGPL 1081 (1441)
Q Consensus 1073 G~~v~~G~~ 1081 (1441)
|+++..|+.
T Consensus 1495 G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 GEVAEFGAP 1503 (1522)
T ss_pred CEEEEECCH
Confidence 899999986
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-64 Score=629.07 Aligned_cols=458 Identities=22% Similarity=0.310 Sum_probs=350.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCcceEEEECCeeCCCCCc----cceEEEEcCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP--SLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~--~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 238 (1441)
+++|+|+|+++++||+++|+|||||||||||++|+|.++| + +|+|.++|+++..... ++.++||+|++.++
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY---EGEIIFEGEELQASNIRDTERAGIAIIHQELALV 94 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHHCCeEEEEeccccC
Confidence 3699999999999999999999999999999999999986 5 8999999998865432 35699999998889
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
+.+||+||+.++......+. . ...+....++++++.+||++..++.+++
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~-------~------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (506)
T PRK13549 95 KELSVLENIFLGNEITPGGI-------M------------------------DYDAMYLRAQKLLAQLKLDINPATPVGN 143 (506)
T ss_pred CCCcHHHHhhhcccccccCC-------c------------------------CHHHHHHHHHHHHHHcCCCCCcccchhh
Confidence 99999999998653211000 0 0001123467789999999888888876
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.. . +++|++++|+..++.++||+|++|
T Consensus 144 -----LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvi~~tH~~~~~~~~~d~v~~l 216 (506)
T PRK13549 144 -----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-H-GIACIYISHKLNEVKAISDTICVI 216 (506)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999998753 3 566777899999999999999999
Q ss_pred cCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHHhchhhhhhHhhh
Q 000529 399 SDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDEL 478 (1441)
Q Consensus 399 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1441)
++|++++.|+.+++.. .+..+
T Consensus 217 ~~G~i~~~~~~~~~~~--------------------------------------------~~~~~--------------- 237 (506)
T PRK13549 217 RDGRHIGTRPAAGMTE--------------------------------------------DDIIT--------------- 237 (506)
T ss_pred ECCEEeeecccccCCH--------------------------------------------HHHHH---------------
Confidence 9999998876432200 00000
Q ss_pred cCcccccccccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCccccchhhh
Q 000529 479 QTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYA 558 (1441)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~ 558 (1441)
+ +. + .. .
T Consensus 238 --------------------------------~-----------------------------~~--~--~~-~------- 244 (506)
T PRK13549 238 --------------------------------M-----------------------------MV--G--RE-L------- 244 (506)
T ss_pred --------------------------------H-----------------------------hh--C--cC-c-------
Confidence 0 00 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccCCCCChhHHHH
Q 000529 559 GALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFK 638 (1441)
Q Consensus 559 g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~ 638 (1441)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHhHcHHHHHHHHHHHhhhcC
Q 000529 639 QYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLG 718 (1441)
Q Consensus 639 ~~l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~ 718 (1441)
+
T Consensus 245 -----------------------------------------------------~-------------------------- 245 (506)
T PRK13549 245 -----------------------------------------------------T-------------------------- 245 (506)
T ss_pred -----------------------------------------------------c--------------------------
Confidence 0
Q ss_pred CCCccccCCCccchhHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccccccc
Q 000529 719 HSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIG 798 (1441)
Q Consensus 719 ~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~v~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1441)
. . . + .
T Consensus 246 ----~------------------~-------------------------------~-~--~------------------- 250 (506)
T PRK13549 246 ----A------------------L-------------------------------Y-P--R------------------- 250 (506)
T ss_pred ----c------------------c-------------------------------c-c--c-------------------
Confidence 0 0 0 0 0
Q ss_pred CcccccCCCCCCCCCcccCCCCcccccccCCCCCCCccccCCCceeeEeceEEEEeccchhhccCCCCCceeeeeceeEE
Q 000529 799 GTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGA 878 (1441)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~ 878 (1441)
. . . .. + .+ .++++|+++.++. .+++.+|+||||+
T Consensus 251 ~------------~-------~---------~~--~-----~~-~l~~~~l~~~~~~----------~~~~~vl~~vsl~ 284 (506)
T PRK13549 251 E------------P-------H---------TI--G-----EV-ILEVRNLTAWDPV----------NPHIKRVDDVSFS 284 (506)
T ss_pred c------------c-------c---------CC--C-----Cc-eEEEecCcccccc----------ccccccccceeeE
Confidence 0 0 0 00 0 00 2455665544310 0124589999999
Q ss_pred EeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcc----ccceEEEEeccCC---CCCCCCCHHHHHH
Q 000529 879 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE----TFARISGYCEQND---IHSPFVTVYESLF 951 (1441)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~lTv~E~l~ 951 (1441)
|++||++||+||||||||||+++|+|..++ +.+|+|.++|.++... ..++.++|++|++ .+++.+||.|++.
T Consensus 285 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 363 (506)
T PRK13549 285 LRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNIT 363 (506)
T ss_pred EcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhh
Confidence 999999999999999999999999997641 1379999999875321 1244689999985 4678899999998
Q ss_pred HHHHhcCC--CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCH
Q 000529 952 YSAWLRLP--PEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028 (1441)
Q Consensus 952 f~~~lr~~--~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~ 1028 (1441)
+....... .....+..++.++++++.+++. +..++.++ .|||||||||+||+||+.+|+||+|||||+|||+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~ 438 (506)
T PRK13549 364 LAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA-----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDV 438 (506)
T ss_pred hhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCH
Confidence 75321111 0012233445688999999996 46677654 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCCC
Q 000529 1029 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1441)
Q Consensus 1029 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~~ 1083 (1441)
.++..+++.|++++++|+|||++|||++ ++.+.||++++|++ |+++..|+..+
T Consensus 439 ~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 491 (506)
T PRK13549 439 GAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHN 491 (506)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEecccc
Confidence 9999999999999888999999999986 57788999999985 89999988754
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=635.46 Aligned_cols=488 Identities=22% Similarity=0.262 Sum_probs=355.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCC----------CC------c-cce
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE----------FV------P-ERT 227 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~----------~~------~-~~~ 227 (1441)
.++|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|..+.. .. . ++.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999987 9999999974411 11 1 236
Q ss_pred EEEEcCCC--CCCCCCCHHHHHHHHhHhc-CCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHH
Q 000529 228 AAYISQHD--NHIGEMTVRETLAFAARCQ-GVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLK 304 (1441)
Q Consensus 228 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1441)
++||+|++ .+++.+||+||+.++.+.. +.. ..+...+++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS----------------------------------REEAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHH
Confidence 99999987 5788899999999986532 110 0112234677899
Q ss_pred HcCCcc---ccccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEE
Q 000529 305 VLGLDI---CADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISL 381 (1441)
Q Consensus 305 ~lgL~~---~~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i 381 (1441)
.+||++ ..+..+++ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++.+ ..+++|+.+
T Consensus 152 ~~gL~~~~~~~~~~~~~-----LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~-~~g~tvi~i 225 (623)
T PRK10261 152 QVRIPEAQTILSRYPHQ-----LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQK-EMSMGVIFI 225 (623)
T ss_pred HCCCCChhhHHhCCCcc-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHH-hcCCEEEEE
Confidence 999964 45666665 999999999999999999999999999999999999999999999864 335667889
Q ss_pred ecChhhHHhhcCeEEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCcccCHHHH
Q 000529 382 LQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEF 461 (1441)
Q Consensus 382 ~q~~~~~~~l~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~ 461 (1441)
+|+..++.++||+|++|++|++++.|+++++.+ .|.+ ++. ..+
T Consensus 226 tHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~-------------------------~~~----~~l 268 (623)
T PRK10261 226 THDMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQH-------------------------PYT----RAL 268 (623)
T ss_pred cCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCC-------------------------hhh----hhh
Confidence 999999999999999999999999998876531 0000 000 000
Q ss_pred HHHHHhchhhhhhHhhhcCcccccccccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhh
Q 000529 462 VAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLF 541 (1441)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~~li~gt~f 541 (1441)
.+. .|
T Consensus 269 ~~~---------------~~------------------------------------------------------------ 273 (623)
T PRK10261 269 LAA---------------VP------------------------------------------------------------ 273 (623)
T ss_pred hhc---------------cC------------------------------------------------------------
Confidence 000 00
Q ss_pred hcccCCCCccccchhhhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHHHHHHH
Q 000529 542 FRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVF 621 (1441)
Q Consensus 542 ~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~ 621 (1441)
.... ..
T Consensus 274 ---~~~~--~~--------------------------------------------------------------------- 279 (623)
T PRK10261 274 ---QLGA--MK--------------------------------------------------------------------- 279 (623)
T ss_pred ---cccc--cc---------------------------------------------------------------------
Confidence 0000 00
Q ss_pred HHhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHhH
Q 000529 622 LSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWS 701 (1441)
Q Consensus 622 i~Y~~~g~~~~~~rf~~~~l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~i 701 (1441)
T Consensus 280 -------------------------------------------------------------------------------- 279 (623)
T PRK10261 280 -------------------------------------------------------------------------------- 279 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHhhhcCCCCccccCCCccchhHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc
Q 000529 702 SPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPR 781 (1441)
Q Consensus 702 sP~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~v~f~i~~~l~L~~~~~~~~~~ 781 (1441)
+.......+. . .
T Consensus 280 ----------------~~~~~~~~~~----~----------------------------------------------~-- 291 (623)
T PRK10261 280 ----------------GLDYPRRFPL----I----------------------------------------------S-- 291 (623)
T ss_pred ----------------cccCCccccc----c----------------------------------------------c--
Confidence 0000000000 0 0
Q ss_pred cccccccccccccccccCcccccCCCCCCCCCcccCCCCcccccccCCCCCCCccccCCCceeeEeceEEEEeccchhhc
Q 000529 782 AVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKL 861 (1441)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (1441)
. . .... . ... . .. .....+ . .-++++|+++.++..... .
T Consensus 292 --------~-~-~~~~-~------------~~~-----~---~~---~~~~~~-----~-~~L~~~~l~~~y~~~~~~-~ 330 (623)
T PRK10261 292 --------L-E-HPAK-Q------------EPP-----I---EQ---DTVVDG-----E-PILQVRNLVTRFPLRSGL-L 330 (623)
T ss_pred --------c-c-cccc-c------------Ccc-----c---cc---ccccCC-----C-ceEEEeeeEEEEcCCCcc-c
Confidence 0 0 0000 0 000 0 00 000000 0 137788888776421000 0
Q ss_pred cCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcc------ccceEEEEec
Q 000529 862 QGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE------TFARISGYCE 935 (1441)
Q Consensus 862 ~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~ 935 (1441)
.. ..+.+.+|+||||+|++||++||+|+||||||||+++|+|..++ .+|+|.++|.++... .+++.++|++
T Consensus 331 ~~-~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~ 407 (623)
T PRK10261 331 NR-VTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRIDTLSPGKLQALRRDIQFIF 407 (623)
T ss_pred cc-cCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEECCcCCHHHHHHhcCCeEEEe
Confidence 00 00124699999999999999999999999999999999998653 479999999875321 2356799999
Q ss_pred cCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhh
Q 000529 936 QND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVA 1012 (1441)
Q Consensus 936 Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~ 1012 (1441)
|++ .+++.+||.|++.+....+. ....++.++++.++++.+||. +..++.+ ..|||||||||+|||||+.
T Consensus 408 Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~-----~~LSgGqrQRv~iAraL~~ 480 (623)
T PRK10261 408 QDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYP-----HEFSGGQRQRICIARALAL 480 (623)
T ss_pred cCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----ccCCHHHHHHHHHHHHHhc
Confidence 997 47888999999987654321 112334456788999999996 4566664 4699999999999999999
Q ss_pred CCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCC
Q 000529 1013 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1013 ~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1082 (1441)
+|+||||||||+|||+.++..++++|++++++ |.|||++|||++ .+.+.+|++++|++ |++++.|+..
T Consensus 481 ~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~~ 549 (623)
T PRK10261 481 NPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPRR 549 (623)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999999999765 899999999986 57788999999985 8999999863
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-64 Score=685.08 Aligned_cols=211 Identities=24% Similarity=0.286 Sum_probs=178.1
Q ss_pred ceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCcc
Q 000529 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1441)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 921 (1441)
..+.|+||+++|+. +...+|+||||+|+|||.+||+|+||||||||+++|.|... +.+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 36999999998842 22359999999999999999999999999999999999876 347999999998
Q ss_pred CCc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000529 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-------RQSLVGLP 991 (1441)
Q Consensus 922 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 991 (1441)
+.. ..+++.++||||++.++.. |++|||... .+.+ ++.++++++..++.+. .|+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 754 4578899999999999874 999999421 1122 3457888988888654 35666654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhC-CCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 992 GVNGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 992 ~~~~LSgGqrqRv~iA~aL~~~-p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
| .+||||||||++|||||+++ |+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|+
T Consensus 1443 G-~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 G-SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD 1518 (1560)
T ss_pred c-CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE
Confidence 3 46999999999999999996 89999999999999999999999999875 4799999999975 567899999998
Q ss_pred cCcEEEEEcCC
Q 000529 1071 RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ~gG~~v~~G~~ 1081 (1441)
+ |+++..|+.
T Consensus 1519 ~-G~VvE~Gt~ 1528 (1560)
T PTZ00243 1519 H-GAVAEMGSP 1528 (1560)
T ss_pred C-CEEEEECCH
Confidence 5 899999986
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-64 Score=624.99 Aligned_cols=450 Identities=20% Similarity=0.320 Sum_probs=348.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc----cceEEEEcCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1441)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 46999999999999999999999999999999999999998 9999999998754322 3469999999888999
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1441)
+||+||+.++...... +. .. ...+....++++++.+||++..|..+++
T Consensus 94 ~tv~e~l~~~~~~~~~---~~---~~------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 141 (501)
T PRK10762 94 LTIAENIFLGREFVNR---FG---RI------------------------DWKKMYAEADKLLARLNLRFSSDKLVGE-- 141 (501)
T ss_pred CcHHHHhhhccccccc---cC---cc------------------------CHHHHHHHHHHHHHHcCCCCCccCchhh--
Confidence 9999999986432100 00 00 0001123467789999999888888877
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~ 400 (1441)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++|+.+++.++||+|++|++
T Consensus 142 ---LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvii~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 142 ---LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-Q-GRGIVYISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999998753 3 56677789999999999999999999
Q ss_pred CeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHHhchhhhhhHhhhcC
Q 000529 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQT 480 (1441)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1441)
|+++..|+.+++.. ++..+.
T Consensus 217 G~i~~~~~~~~~~~--------------------------------------------~~~~~~---------------- 236 (501)
T PRK10762 217 GQFIAEREVADLTE--------------------------------------------DSLIEM---------------- 236 (501)
T ss_pred CEEEEecCcCcCCH--------------------------------------------HHHHHH----------------
Confidence 99998775432100 000000
Q ss_pred cccccccccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCccccchhhhHH
Q 000529 481 PFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGA 560 (1441)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~ 560 (1441)
++ . .
T Consensus 237 ------------------------------------------------------------~~--~--~------------ 240 (501)
T PRK10762 237 ------------------------------------------------------------MV--G--R------------ 240 (501)
T ss_pred ------------------------------------------------------------hc--C--C------------
Confidence 00 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccCCCCChhHHHHHH
Q 000529 561 LFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQY 640 (1441)
Q Consensus 561 lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~~ 640 (1441)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK10762 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHhHcHHHHHHHHHHHhhhcCCC
Q 000529 641 LLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHS 720 (1441)
Q Consensus 641 l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~ 720 (1441)
.
T Consensus 241 -------------------------------------------------------------------------------~ 241 (501)
T PRK10762 241 -------------------------------------------------------------------------------K 241 (501)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CccccCCCccchhHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccccccccccCc
Q 000529 721 WKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGT 800 (1441)
Q Consensus 721 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~v~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1441)
..... +
T Consensus 242 ~~~~~--------------------------------------------------~------------------------ 247 (501)
T PRK10762 242 LEDQY--------------------------------------------------P------------------------ 247 (501)
T ss_pred ccccc--------------------------------------------------c------------------------
Confidence 00000 0
Q ss_pred ccccCCCCCCCCCcccCCCCcccccccCCCCCCCccccCCCceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEe
Q 000529 801 VQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFR 880 (1441)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~ 880 (1441)
. . .. +. .+..++++|++. .+|+|+||+|+
T Consensus 248 -----------~-------~---~~----~~--------~~~~l~~~~l~~------------------~~l~~vsl~i~ 276 (501)
T PRK10762 248 -----------R-------L---DK----AP--------GEVRLKVDNLSG------------------PGVNDVSFTLR 276 (501)
T ss_pred -----------c-------c---cc----CC--------CCcEEEEeCccc------------------CCcccceEEEc
Confidence 0 0 00 00 001245555431 26999999999
Q ss_pred CCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcc----ccceEEEEeccCC---CCCCCCCHHHHHHHH
Q 000529 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE----TFARISGYCEQND---IHSPFVTVYESLFYS 953 (1441)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~lTv~E~l~f~ 953 (1441)
+||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.+||++|++ .+++.+||.|++.+.
T Consensus 277 ~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~ 354 (501)
T PRK10762 277 KGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLT 354 (501)
T ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhh
Confidence 9999999999999999999999998653 479999999875421 1345699999995 467889999999875
Q ss_pred HHhcCC---CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHH
Q 000529 954 AWLRLP---PEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029 (1441)
Q Consensus 954 ~~lr~~---~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~ 1029 (1441)
...... .....++.++.++++++.++|. +..++.++ .|||||||||+||+||+.+|++|+|||||+|||+.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~ 429 (501)
T PRK10762 355 ALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVG 429 (501)
T ss_pred hhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHh
Confidence 321110 0012233345688999999995 56777654 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCCC
Q 000529 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1441)
Q Consensus 1030 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~~ 1083 (1441)
++..+.+.|++++++|+|||++||++. .+.+.||++++|++ |++++.|+..+
T Consensus 430 ~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 430 AKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 999999999999878999999999986 57788999999985 89999998754
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-64 Score=626.93 Aligned_cols=458 Identities=22% Similarity=0.305 Sum_probs=349.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc----cceEEEEcCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1441)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 36999999999999999999999999999999999999988 9999999998865432 2469999999888999
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1441)
+||+||+.++...... .+.. ... ...+....++.+++.+||.+..++.+++
T Consensus 95 ~tv~e~l~~~~~~~~~--~~~~-~~~------------------------~~~~~~~~~~~~l~~~gl~~~~~~~~~~-- 145 (510)
T PRK09700 95 LTVLENLYIGRHLTKK--VCGV-NII------------------------DWREMRVRAAMMLLRVGLKVDLDEKVAN-- 145 (510)
T ss_pred CcHHHHhhhccccccc--cccc-ccc------------------------CHHHHHHHHHHHHHHcCCCCCcccchhh--
Confidence 9999999875421000 0000 000 0011223467789999999888888876
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~ 400 (1441)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++. . +++|++++|+..++.++||+|++|++
T Consensus 146 ---LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsHd~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 146 ---LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-E-GTAIVYISHKLAEIRRICDRYTVMKD 220 (510)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999754 3 56677789999999999999999999
Q ss_pred CeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHHhchhhhhhHhhhcC
Q 000529 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQT 480 (1441)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1441)
|++++.|+++++.. . +..+
T Consensus 221 G~i~~~g~~~~~~~----------------------------~----------------~~~~----------------- 239 (510)
T PRK09700 221 GSSVCSGMVSDVSN----------------------------D----------------DIVR----------------- 239 (510)
T ss_pred CEEeeecchhhCCH----------------------------H----------------HHHH-----------------
Confidence 99999887654210 0 0000
Q ss_pred cccccccccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCccccchhhhHH
Q 000529 481 PFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGA 560 (1441)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~ 560 (1441)
+ .. + .. ..
T Consensus 240 ------------------------------~-----------------------------~~--~--~~-~~-------- 247 (510)
T PRK09700 240 ------------------------------L-----------------------------MV--G--RE-LQ-------- 247 (510)
T ss_pred ------------------------------H-----------------------------hc--C--CC-cc--------
Confidence 0 00 0 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccCCCCChhHHHHHH
Q 000529 561 LFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQY 640 (1441)
Q Consensus 561 lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~~ 640 (1441)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHhHcHHHHHHHHHHHhhhcCCC
Q 000529 641 LLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHS 720 (1441)
Q Consensus 641 l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~ 720 (1441)
+ .+
T Consensus 248 ----------------------------------------------~---------------------------~~---- 250 (510)
T PRK09700 248 ----------------------------------------------N---------------------------RF---- 250 (510)
T ss_pred ----------------------------------------------c---------------------------cc----
Confidence 0 00
Q ss_pred CccccCCCccchhHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccccccccccCc
Q 000529 721 WKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGT 800 (1441)
Q Consensus 721 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~v~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1441)
.. . . .
T Consensus 251 -~~------------------~---------------------------------~----------------------~- 255 (510)
T PRK09700 251 -NA------------------M---------------------------------K----------------------E- 255 (510)
T ss_pred -cc------------------c---------------------------------c----------------------c-
Confidence 00 0 0 0
Q ss_pred ccccCCCCCCCCCcccCCCCcccccccCCCCCCCccccCCCceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEe
Q 000529 801 VQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFR 880 (1441)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~ 880 (1441)
.. . . .. + +..+.++|+++.. ..+|+||||+|+
T Consensus 256 -----------~~------~---~-----~~-~-------~~~l~~~~l~~~~---------------~~~l~~isl~i~ 287 (510)
T PRK09700 256 -----------NV------S---N-----LA-H-------ETVFEVRNVTSRD---------------RKKVRDISFSVC 287 (510)
T ss_pred -----------cc------c---c-----CC-C-------CcEEEEeCccccC---------------CCcccceeEEEc
Confidence 00 0 0 00 0 0125666665321 137999999999
Q ss_pred CCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcc----ccceEEEEeccC---CCCCCCCCHHHHHHHH
Q 000529 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE----TFARISGYCEQN---DIHSPFVTVYESLFYS 953 (1441)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~---~~~~~~lTv~E~l~f~ 953 (1441)
+||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.+||++|+ ..+++.+||.|++.+.
T Consensus 288 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~ 365 (510)
T PRK09700 288 RGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAIS 365 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccc
Confidence 9999999999999999999999998653 479999999875321 234568999998 4577889999999875
Q ss_pred HHhc---CCC--C-CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCC
Q 000529 954 AWLR---LPP--E-VNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026 (1441)
Q Consensus 954 ~~lr---~~~--~-~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgL 1026 (1441)
...+ ... . ......++.++++++.+++. +..++.++ .|||||||||+|||+|+.+|+||||||||+||
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~L 440 (510)
T PRK09700 366 RSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT-----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGI 440 (510)
T ss_pred cccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc-----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCc
Confidence 3211 000 0 11223335678999999996 66777654 59999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1027 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1027 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
|+.++..+++.|++++++|.|||++|||+. .+.+.||++++|++ |++++.++.
T Consensus 441 D~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 441 DVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 999999999999999878999999999986 57788999999985 799988865
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-63 Score=623.44 Aligned_cols=463 Identities=22% Similarity=0.278 Sum_probs=348.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcceEEEECCeeCCCCCc-------cceEEEEcCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL--KVSGRVTYNGHNMDEFVP-------ERTAAYISQHD 235 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 235 (1441)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|+++..... ++.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 469999999999999999999999999999999999998610 128999999998765321 24699999986
Q ss_pred C--CCCCCCHHHHHHHHhHhc-CCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc--
Q 000529 236 N--HIGEMTVRETLAFAARCQ-GVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI-- 310 (1441)
Q Consensus 236 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-- 310 (1441)
. +++.+||+|++.+..... +. . ..+...+++++++.+||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~----------~------------------------~~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGM----------R------------------------REAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCC----------C------------------------HHHHHHHHHHHHHHCCCCChH
Confidence 4 567789999988653321 10 0 0112234678899999975
Q ss_pred -ccccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHH
Q 000529 311 -CADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETY 389 (1441)
Q Consensus 311 -~~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~ 389 (1441)
..|+.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++. ..+.+|++++|+.+++.
T Consensus 148 ~~~~~~~~~-----LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tvi~vtHd~~~~~ 221 (529)
T PRK15134 148 KRLTDYPHQ-----LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQ-ELNMGLLFITHNLSIVR 221 (529)
T ss_pred HHHhhCCcc-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHH-hcCCeEEEEcCcHHHHH
Confidence 35777766 999999999999999999999999999999999999999999998754 33566777899999999
Q ss_pred hhcCeEEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHHhch
Q 000529 390 NLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFH 469 (1441)
Q Consensus 390 ~l~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1441)
++||+|++|++|++++.|+++++.+. |.
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~-------------------------------------------- 249 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PT-------------------------------------------- 249 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CC--------------------------------------------
Confidence 99999999999999999987654210 00
Q ss_pred hhhhhHhhhcCcccccccccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 000529 470 VGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKD 549 (1441)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~ 549 (1441)
+. + . +.+ + ...
T Consensus 250 ------------------~~-------~-------~-----~~~----------------------------~--~~~-- 260 (529)
T PRK15134 250 ------------------HP-------Y-------T-----QKL----------------------------L--NSE-- 260 (529)
T ss_pred ------------------CH-------H-------H-----HHH----------------------------H--HhC--
Confidence 00 0 0 000 0 000
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccCC
Q 000529 550 SVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGY 629 (1441)
Q Consensus 550 ~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~ 629 (1441)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHhHcHHHHHHH
Q 000529 630 DPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQN 709 (1441)
Q Consensus 630 ~~~~~rf~~~~l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~ 709 (1441)
+.
T Consensus 261 --------------------------------------------------------------~~---------------- 262 (529)
T PRK15134 261 --------------------------------------------------------------PS---------------- 262 (529)
T ss_pred --------------------------------------------------------------cc----------------
Confidence 00
Q ss_pred HHHHhhhcCCCCccccCCCccchhHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccc
Q 000529 710 GILANEFLGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFE 789 (1441)
Q Consensus 710 al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~v~f~i~~~l~L~~~~~~~~~~~~~~~~~~ 789 (1441)
. . +
T Consensus 263 --------~---~-----------------------------------------------------~------------- 265 (529)
T PRK15134 263 --------G---D-----------------------------------------------------P------------- 265 (529)
T ss_pred --------c---c-----------------------------------------------------c-------------
Confidence 0 0 0
Q ss_pred cccccccccCcccccCCCCCCCCCcccCCCCcccccccCCCCCCCccccCCCceeeEeceEEEEeccch-hhccCCCCCc
Q 000529 790 SDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQ-MKLQGVPEDK 868 (1441)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 868 (1441)
. . . . .. . +..++++|+++.++.... .+ ...++
T Consensus 266 ---------~------------~-------~----~----~~-~-------~~~l~~~~l~~~~~~~~~~~~---~~~~~ 298 (529)
T PRK15134 266 ---------V------------P-------L----P----EP-A-------SPLLDVEQLQVAFPIRKGILK---RTVDH 298 (529)
T ss_pred ---------c------------c-------c----C----CC-C-------CCcccccCcEEEeecCccccc---ccccc
Confidence 0 0 0 0 00 0 002455566655421100 00 00013
Q ss_pred eeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcc------ccceEEEEeccCC--CC
Q 000529 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE------TFARISGYCEQND--IH 940 (1441)
Q Consensus 869 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~--~~ 940 (1441)
+.+|+|||++|++||++||+||||||||||+++|+|..+ .+|+|.++|.++... .+++.+||++|++ .+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 469999999999999999999999999999999999763 379999999875321 1245689999996 46
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEE
Q 000529 941 SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1019 (1441)
Q Consensus 941 ~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlL 1019 (1441)
++.+||.|++.+....+.. .....+.++.++++++.++|. +..++.+ ..|||||||||+|||||+.+|++|+|
T Consensus 376 ~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred CCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 7889999999886543211 122334456688999999997 4566654 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1020 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1020 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
||||+|||+.++..+++.|++++++ |+|||++||++. .+.+.||++++|++ |+++..|+.
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 9999999999999999999999865 899999999986 47788999999985 799998875
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-63 Score=678.69 Aligned_cols=210 Identities=19% Similarity=0.234 Sum_probs=177.6
Q ss_pred ceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCcc
Q 000529 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1441)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 921 (1441)
..++|+||+++++. +.+.+|+|||++|+|||.+||+|+||||||||+++|+|... .+|+|.+||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 36999999998852 23469999999999999999999999999999999999864 37999999998
Q ss_pred CCc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000529 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-------RQSLVGLP 991 (1441)
Q Consensus 922 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 991 (1441)
+.. ..+++.++||||++.+++. |++|||.... . ..++.++++++.++|.+. .|+.+|..
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~----~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------Q----WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------C----CCHHHHHHHHHHCCCHHHHHhCccccccccccC
Confidence 764 3467889999999999974 9999994211 1 123457889999888653 35566653
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEec
Q 000529 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1441)
Q Consensus 992 ~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~ 1071 (1441)
..+||||||||++|||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1351 -G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1351 -GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred -CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 34699999999999999999999999999999999999999999999875 4799999999975 4567999999985
Q ss_pred CcEEEEEcCC
Q 000529 1072 GGREVYVGPL 1081 (1441)
Q Consensus 1072 gG~~v~~G~~ 1081 (1441)
|+++..|++
T Consensus 1427 -G~ivE~g~p 1435 (1490)
T TIGR01271 1427 -SSVKQYDSI 1435 (1490)
T ss_pred -CEEEEeCCH
Confidence 899999986
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-63 Score=620.31 Aligned_cols=445 Identities=24% Similarity=0.329 Sum_probs=344.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCcceEEEECC-----------------------eeC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL--DPSLKVSGRVTYNG-----------------------HNM 219 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l--~~~~~~~G~V~~~G-----------------------~~~ 219 (1441)
+++|+|+|+.+.+|++++|+|||||||||||++|+|.+ +|+ +|+|.++| .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999996 576 89999972 221
Q ss_pred C-------CC------CccceEEEEcCC-CCCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHH
Q 000529 220 D-------EF------VPERTAAYISQH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285 (1441)
Q Consensus 220 ~-------~~------~~~~~~~yv~Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~ 285 (1441)
. .. ..++.++|++|+ +.+++.+||+||+.|+....+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~---------------------------- 141 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYE---------------------------- 141 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCC----------------------------
Confidence 1 00 013469999997 67888899999999875432210
Q ss_pred HhhcchhhhhHHHHHHHHHHcCCccccccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHH
Q 000529 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC 365 (1441)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~ 365 (1441)
..+...+++++++.+||++..+..+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.
T Consensus 142 ------~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 142 ------GKEAVGRAVDLIEMVQLSHRITHIARD-----LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred ------HHHHHHHHHHHHHHcCChhhhhcCccc-----CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 001123467789999999888887776 999999999999999999999999999999999999999999
Q ss_pred HHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHhhcCchhhhhh
Q 000529 366 FKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQY 445 (1441)
Q Consensus 366 l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~ 445 (1441)
|+++++. .+++|++++|+...+.++||+|++|++|++++.|+++++.+.+.
T Consensus 211 l~~l~~~-~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~---------------------------- 261 (520)
T TIGR03269 211 LEEAVKA-SGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFM---------------------------- 261 (520)
T ss_pred HHHHHHh-cCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHH----------------------------
Confidence 9987643 35677889999999999999999999999998876654311000
Q ss_pred hhccCCCCcccCHHHHHHHHHhchhhhhhHhhhcCcccccccccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHH
Q 000529 446 WAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIF 525 (1441)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~ 525 (1441)
T Consensus 262 -------------------------------------------------------------------------------- 261 (520)
T TIGR03269 262 -------------------------------------------------------------------------------- 261 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCccccchhhhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHhhhcCCcChhhHHHHHH
Q 000529 526 KLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSW 605 (1441)
Q Consensus 526 ~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~ 605 (1441)
. ... .
T Consensus 262 ----------------~--~~~-~-------------------------------------------------------- 266 (520)
T TIGR03269 262 ----------------E--GVS-E-------------------------------------------------------- 266 (520)
T ss_pred ----------------h--hch-h--------------------------------------------------------
Confidence 0 000 0
Q ss_pred HHHhhHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhccc
Q 000529 606 ILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFV 685 (1441)
Q Consensus 606 l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~~l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l~~Gf~ 685 (1441)
T Consensus 267 -------------------------------------------------------------------------------- 266 (520)
T TIGR03269 267 -------------------------------------------------------------------------------- 266 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhHHHHHHhHcHHHHHHHHHHHhhhcCCCCccccCCCccchhHHhhhcccccccchhHHHHHHHHHHHHHHHHH
Q 000529 686 LSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNV 765 (1441)
Q Consensus 686 i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~v~f~i 765 (1441)
+ .
T Consensus 267 -----~------------------------------~------------------------------------------- 268 (520)
T TIGR03269 267 -----V------------------------------E------------------------------------------- 268 (520)
T ss_pred -----h------------------------------c-------------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHhccccCCCccccccccccccccccccCcccccCCCCCCCCCcccCCCCcccccccCCCCCCCccccCCCceee
Q 000529 766 GFALALTFLNQFEKPRAVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLT 845 (1441)
Q Consensus 766 ~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (1441)
+. . . . . . + ...++
T Consensus 269 -------------~~------------------~-------------~------~---~------~--~------~~~l~ 281 (520)
T TIGR03269 269 -------------KE------------------C-------------E------V---E------V--G------EPIIK 281 (520)
T ss_pred -------------cc------------------c-------------c------c---C------C--C------CceEE
Confidence 00 0 0 0 0 0 0 00256
Q ss_pred EeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEc-Ccc---
Q 000529 846 FDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRIS-GYP--- 921 (1441)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~-g~~--- 921 (1441)
++|+++.++.. ..+++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++ |.+
T Consensus 282 ~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~~~~ 351 (520)
T TIGR03269 282 VRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDEWVD 351 (520)
T ss_pred EeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCcccc
Confidence 67777665310 01224699999999999999999999999999999999998653 47999996 532
Q ss_pred CCc------cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-----cccccccC
Q 000529 922 KKQ------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-----LRQSLVGL 990 (1441)
Q Consensus 922 ~~~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-----~~~~~vg~ 990 (1441)
... ...++.+||++|++.+++.+||.|++.+...+. ...+..++.++++++.++|.+ ..++.+
T Consensus 352 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-- 425 (520)
T TIGR03269 352 MTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYP-- 425 (520)
T ss_pred ccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCCh--
Confidence 111 112456899999988889999999998754321 122333456788999999975 345553
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEE
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLM 1069 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL 1069 (1441)
..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||++. .+.+.||++++|
T Consensus 426 ---~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l 501 (520)
T TIGR03269 426 ---DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALM 501 (520)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999999765 899999999986 577889999999
Q ss_pred ecCcEEEEEcCC
Q 000529 1070 KRGGREVYVGPL 1081 (1441)
Q Consensus 1070 ~~gG~~v~~G~~ 1081 (1441)
++ |++++.|+.
T Consensus 502 ~~-G~i~~~g~~ 512 (520)
T TIGR03269 502 RD-GKIVKIGDP 512 (520)
T ss_pred EC-CEEEEECCH
Confidence 85 899998875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-63 Score=617.91 Aligned_cols=454 Identities=20% Similarity=0.275 Sum_probs=346.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc----cceEEEEcCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1441)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 35999999999999999999999999999999999999998 9999999998765432 2469999999989999
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1441)
+||+||+.|+.... . +....++++++.+||++..++.+++
T Consensus 101 ~tv~e~l~~~~~~~--------------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (510)
T PRK15439 101 LSVKENILFGLPKR--------------Q------------------------ASMQKMKQLLAALGCQLDLDSSAGS-- 140 (510)
T ss_pred CcHHHHhhcccccc--------------h------------------------HHHHHHHHHHHHcCCCccccCChhh--
Confidence 99999998853210 0 0112356789999999888888876
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~ 400 (1441)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++. . +.+|+.++|+.+++.++||+|++|++
T Consensus 141 ---LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiivtHd~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 141 ---LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-Q-GVGIVFISHKLPEIRQLADRISVMRD 215 (510)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998754 3 56777799999999999999999999
Q ss_pred CeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHHhchhhhhhHhhhcC
Q 000529 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQT 480 (1441)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1441)
|++++.|+++++... + ..+.+
T Consensus 216 G~i~~~g~~~~~~~~---------------------------~-----------------~~~~~--------------- 236 (510)
T PRK15439 216 GTIALSGKTADLSTD---------------------------D-----------------IIQAI--------------- 236 (510)
T ss_pred CEEEEecChHHcCHH---------------------------H-----------------HHHHH---------------
Confidence 999999987653210 0 00000
Q ss_pred cccccccccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCccccchhhhHH
Q 000529 481 PFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGA 560 (1441)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~ 560 (1441)
........ ..
T Consensus 237 -------------------------------------------------------------~~~~~~~~-~~-------- 246 (510)
T PRK15439 237 -------------------------------------------------------------TPAAREKS-LS-------- 246 (510)
T ss_pred -------------------------------------------------------------hCcccccc-cc--------
Confidence 00000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccCCCCChhHHHHHH
Q 000529 561 LFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQY 640 (1441)
Q Consensus 561 lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~~ 640 (1441)
T Consensus 247 -------------------------------------------------------------------------------- 246 (510)
T PRK15439 247 -------------------------------------------------------------------------------- 246 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHhHcHHHHHHHHHHHhhhcCCC
Q 000529 641 LLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHS 720 (1441)
Q Consensus 641 l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~ 720 (1441)
. .. .
T Consensus 247 -----------------------------------------------~--~~---------------------------~ 250 (510)
T PRK15439 247 -----------------------------------------------A--SQ---------------------------K 250 (510)
T ss_pred -----------------------------------------------c--cc---------------------------c
Confidence 0 00 0
Q ss_pred CccccCCCccchhHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccccccccccCc
Q 000529 721 WKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGT 800 (1441)
Q Consensus 721 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~v~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1441)
.. ..+ +
T Consensus 251 ~~-----------------~~~---------------------------------~------------------------ 256 (510)
T PRK15439 251 LW-----------------LEL---------------------------------P------------------------ 256 (510)
T ss_pred cc-----------------ccc---------------------------------c------------------------
Confidence 00 000 0
Q ss_pred ccccCCCCCCCCCcccCCCCcccccccCCCCCCCccccCCCceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEe
Q 000529 801 VQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFR 880 (1441)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~ 880 (1441)
... . .. + .+ +..+.++|++. .+|+|||++|+
T Consensus 257 -----------~~~-----~------~~-~--~~------~~~l~~~~l~~------------------~~l~~isl~i~ 287 (510)
T PRK15439 257 -----------GNR-----R------QQ-A--AG------APVLTVEDLTG------------------EGFRNISLEVR 287 (510)
T ss_pred -----------ccc-----c------cc-C--CC------CceEEEeCCCC------------------CCccceeEEEc
Confidence 000 0 00 0 00 01255556541 15899999999
Q ss_pred CCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcc----ccceEEEEeccCC---CCCCCCCHHHHHHHH
Q 000529 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE----TFARISGYCEQND---IHSPFVTVYESLFYS 953 (1441)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~lTv~E~l~f~ 953 (1441)
+||++||+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|++ .+++.+|+.|++...
T Consensus 288 ~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~ 365 (510)
T PRK15439 288 AGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCAL 365 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhh
Confidence 9999999999999999999999997653 479999999875431 1234689999984 477889999998642
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHH
Q 000529 954 AWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032 (1441)
Q Consensus 954 ~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~ 1032 (1441)
...+..........++.++++++.+++. +..++.++ .|||||||||+||++|+.+|+||||||||+|||+.++.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~ 440 (510)
T PRK15439 366 THNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARN 440 (510)
T ss_pred hhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHH
Confidence 1111111011222345688999999997 66777654 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCCC
Q 000529 1033 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1441)
Q Consensus 1033 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~~ 1083 (1441)
.+++.|++++++|.|||++|||++ .+.+.||++++|++ |++++.|..++
T Consensus 441 ~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~~ 489 (510)
T PRK15439 441 DIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcccc
Confidence 999999999888999999999986 57788999999984 89999887643
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=614.75 Aligned_cols=458 Identities=20% Similarity=0.280 Sum_probs=346.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCcceEEEECCeeCCCCCc----cceEEEEcCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP--SLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~--~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 238 (1441)
+++|+|+|+++++|++++|+|||||||||||++|+|.++| + +|+|.++|+++..... ++.++||+|++.++
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTW---DGEIYWSGSPLKASNIRDTERAGIVIIHQELTLV 90 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHhCCEEEEeeccccC
Confidence 4699999999999999999999999999999999999886 5 8999999998865432 24699999998889
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccc-ccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICA-DTMVG 317 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~vg 317 (1441)
+.+||+||+.++......+... ..++...+++.+++.+||++.. ++.++
T Consensus 91 ~~~tv~~~l~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (500)
T TIGR02633 91 PELSVAENIFLGNEITLPGGRM------------------------------AYNAMYLRAKNLLRELQLDADNVTRPVG 140 (500)
T ss_pred CCCcHHHHHHhhcccccccccc------------------------------CHHHHHHHHHHHHHHcCCCCCcccCchh
Confidence 9999999999864321000000 0001123467789999998764 46666
Q ss_pred cccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000529 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1441)
Q Consensus 318 ~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vil 397 (1441)
+ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++. .+++|+.++|+.+++.++||+|++
T Consensus 141 ~-----LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tviiitHd~~~~~~~~d~i~~ 213 (500)
T TIGR02633 141 D-----YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA--HGVACVYISHKLNEVKAVCDTICV 213 (500)
T ss_pred h-----CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCcHHHHHHhCCEEEE
Confidence 6 999999999999999999999999999999999999999999998753 356777799999999999999999
Q ss_pred ecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHHhchhhhhhHhh
Q 000529 398 LSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDE 477 (1441)
Q Consensus 398 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1441)
|++|++++.|+.+++.. ++.
T Consensus 214 l~~G~i~~~~~~~~~~~--------------------------------------------~~~---------------- 233 (500)
T TIGR02633 214 IRDGQHVATKDMSTMSE--------------------------------------------DDI---------------- 233 (500)
T ss_pred EeCCeEeeecCcccCCH--------------------------------------------HHH----------------
Confidence 99999987654321000 000
Q ss_pred hcCcccccccccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCccccchhh
Q 000529 478 LQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIY 557 (1441)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~ 557 (1441)
. . .+. + ..
T Consensus 234 ------------------------------------~-------------------~-----~~~--~--~~-------- 241 (500)
T TIGR02633 234 ------------------------------------I-------------------T-----MMV--G--RE-------- 241 (500)
T ss_pred ------------------------------------H-------------------H-----HHh--C--cc--------
Confidence 0 0 000 0 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhchhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccCCCCChhHHH
Q 000529 558 AGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFF 637 (1441)
Q Consensus 558 ~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~ 637 (1441)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T TIGR02633 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHhHcHHHHHHHHHHHhhhc
Q 000529 638 KQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFL 717 (1441)
Q Consensus 638 ~~~l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~ 717 (1441)
.+
T Consensus 242 -----------------------------------------------------~~------------------------- 243 (500)
T TIGR02633 242 -----------------------------------------------------IT------------------------- 243 (500)
T ss_pred -----------------------------------------------------cc-------------------------
Confidence 00
Q ss_pred CCCCccccCCCccchhHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccccccccc
Q 000529 718 GHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRI 797 (1441)
Q Consensus 718 ~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~v~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1441)
. .. +
T Consensus 244 -----~------------------~~--------------------------------~--------------------- 247 (500)
T TIGR02633 244 -----S------------------LY--------------------------------P--------------------- 247 (500)
T ss_pred -----c------------------cc--------------------------------c---------------------
Confidence 0 00 0
Q ss_pred cCcccccCCCCCCCCCcccCCCCcccccccCCCCCCCccccCCCceeeEeceEEEEeccchhhccCCCCCceeeeeceeE
Q 000529 798 GGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSG 877 (1441)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~ 877 (1441)
. . . . +. . ...++++|+++.+.. .+++.+|+|+||
T Consensus 248 -~------------~-------~----~----~~-~-------~~~l~~~~l~~~~~~----------~~~~~~l~~is~ 281 (500)
T TIGR02633 248 -H------------E-------P----H----EI-G-------DVILEARNLTCWDVI----------NPHRKRVDDVSF 281 (500)
T ss_pred -c------------c-------c----c----CC-C-------CceEEEeCCcccccc----------ccccccccccee
Confidence 0 0 0 0 00 0 002555666543210 012358999999
Q ss_pred EEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc----cccceEEEEeccCC---CCCCCCCHHHHH
Q 000529 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ----ETFARISGYCEQND---IHSPFVTVYESL 950 (1441)
Q Consensus 878 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~lTv~E~l 950 (1441)
+|++||++||+|||||||||||++|+|..++ +.+|+|.++|.+... ...++.+||++|+. .+++.+||+|++
T Consensus 282 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~ 360 (500)
T TIGR02633 282 SLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI 360 (500)
T ss_pred EEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHh
Confidence 9999999999999999999999999998652 137999999987632 12345689999995 478889999999
Q ss_pred HHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCC
Q 000529 951 FYSAWLRLP--PEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027 (1441)
Q Consensus 951 ~f~~~lr~~--~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD 1027 (1441)
.++..-... ........++.++++++.+++.+ ..++.++ .|||||||||+||++|+.+|++|+|||||+|||
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD 435 (500)
T TIGR02633 361 TLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG-----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435 (500)
T ss_pred cchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence 875321110 01122334456889999999964 4666654 599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCC
Q 000529 1028 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1028 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1082 (1441)
+.++..+++.|++++++|.|||++|||++ .+.+.||++++|++ |+++..++..
T Consensus 436 ~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 436 VGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred HhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 99999999999999888999999999986 57788999999985 7898887653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=614.02 Aligned_cols=452 Identities=22% Similarity=0.316 Sum_probs=345.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc----cceEEEEcCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1441)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 35999999999999999999999999999999999999988 9999999998754321 3579999999888999
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1441)
+||+||+.++......+. . ...+....++.+++.+||++..++.+++
T Consensus 94 ~tv~~~l~~~~~~~~~~~-------~------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGI-------V------------------------NRRLLNYEAREQLEHLGVDIDPDTPLKY-- 140 (501)
T ss_pred CCHHHHHHhcccccccCC-------C------------------------CHHHHHHHHHHHHHHcCCCCCcCCchhh--
Confidence 999999998632110000 0 0001123456789999998877877766
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~ 400 (1441)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. .+++|+.++|+.+++.++||+|++|++
T Consensus 141 ---LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiiiitHd~~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 141 ---LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA--EGRVILYVSHRMEEIFALCDAITVFKD 215 (501)
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998753 356777899999999999999999999
Q ss_pred CeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHHhchhhhhhHhhhcC
Q 000529 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQT 480 (1441)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1441)
|+++..++..+. .+.++.
T Consensus 216 G~i~~~~~~~~~-------------------------------------------~~~~~~------------------- 233 (501)
T PRK11288 216 GRYVATFDDMAQ-------------------------------------------VDRDQL------------------- 233 (501)
T ss_pred CEEEeecCcccc-------------------------------------------CCHHHH-------------------
Confidence 999864421000 000000
Q ss_pred cccccccccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCccccchhhhHH
Q 000529 481 PFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGA 560 (1441)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~ 560 (1441)
. . .+. . .. .
T Consensus 234 ------------------------~-----~----------------------------~~~--~--~~-~--------- 242 (501)
T PRK11288 234 ------------------------V-----Q----------------------------AMV--G--RE-I--------- 242 (501)
T ss_pred ------------------------H-----H----------------------------Hhc--C--CC-c---------
Confidence 0 0 000 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccCCCCChhHHHHHH
Q 000529 561 LFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQY 640 (1441)
Q Consensus 561 lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~~ 640 (1441)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHhHcHHHHHHHHHHHhhhcCCC
Q 000529 641 LLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHS 720 (1441)
Q Consensus 641 l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~ 720 (1441)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCccchhHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccccccccccCc
Q 000529 721 WKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGT 800 (1441)
Q Consensus 721 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~v~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1441)
.. . . .
T Consensus 243 -~~------------------~------------------------------------------------------~-~- 247 (501)
T PRK11288 243 -GD------------------I------------------------------------------------------Y-G- 247 (501)
T ss_pred -cc------------------c------------------------------------------------------c-c-
Confidence 00 0 0 0
Q ss_pred ccccCCCCCCCCCcccCCCCcccccccCCCCCCCccccCCCceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEe
Q 000529 801 VQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFR 880 (1441)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~ 880 (1441)
.. . . +. .+..+.++|+++ ..+++|+|++|+
T Consensus 248 ------------~~-----~----~----~~--------~~~~l~~~~~~~-----------------~~~l~~isl~i~ 277 (501)
T PRK11288 248 ------------YR-----P----R----PL--------GEVRLRLDGLKG-----------------PGLREPISFSVR 277 (501)
T ss_pred ------------cc-----c----c----CC--------CCcEEEEecccc-----------------CCcccceeEEEe
Confidence 00 0 0 00 001245555541 138999999999
Q ss_pred CCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc----cccceEEEEeccCC---CCCCCCCHHHHHHHH
Q 000529 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ----ETFARISGYCEQND---IHSPFVTVYESLFYS 953 (1441)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~lTv~E~l~f~ 953 (1441)
+||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++ .+++.+|+.|++.+.
T Consensus 278 ~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~ 355 (501)
T PRK11288 278 AGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINIS 355 (501)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccc
Confidence 999999999999999999999999865 347999999986532 12245689999986 478889999999775
Q ss_pred HHhcC-CCC--CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHH
Q 000529 954 AWLRL-PPE--VNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029 (1441)
Q Consensus 954 ~~lr~-~~~--~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~ 1029 (1441)
..... +.. ......++.++++++.+++. +..++.++ .|||||||||+||++|+.+|+||||||||+|||+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~ 430 (501)
T PRK11288 356 ARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVG 430 (501)
T ss_pred cchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHh
Confidence 32111 000 11223345678999999994 66777754 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCCCc
Q 000529 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHH 1084 (1441)
Q Consensus 1030 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~~~ 1084 (1441)
++..+++.|+++++.|.|||++|||++ .+.+.+|++++|++ |++++.|..++.
T Consensus 431 ~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~ 483 (501)
T PRK11288 431 AKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQA 483 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccccC
Confidence 999999999999888999999999986 57789999999985 899999987653
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=602.83 Aligned_cols=450 Identities=18% Similarity=0.278 Sum_probs=343.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc----cceEEEEcCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1441)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 46999999999999999999999999999999999999998 9999999998764322 3569999999888899
Q ss_pred CCHHHHHHHHhH-hcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccc
Q 000529 241 MTVRETLAFAAR-CQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1441)
Q Consensus 241 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1441)
+||+||+.++.. ..+.. . ...+....++.+++.+||++..++.+++
T Consensus 88 ~tv~~~l~~~~~~~~~~~--------~------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 134 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMF--------V------------------------DQDKMYRDTKAIFDELDIDIDPRAKVAT- 134 (491)
T ss_pred CCHHHHhhcccccccccc--------c------------------------CHHHHHHHHHHHHHHcCCCCCccCchhh-
Confidence 999999988532 11100 0 0001123467789999999888888776
Q ss_pred cccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000529 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1441)
Q Consensus 320 ~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~ 399 (1441)
|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++. .+.+|+.++|+.+++.++||+|++|+
T Consensus 135 ----LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tvii~tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 135 ----LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE--RGCGIVYISHKMEEIFQLCDEITILR 208 (491)
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999998753 35667778999999999999999999
Q ss_pred CCeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHHhchhhhhhHhhhc
Q 000529 400 DGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQ 479 (1441)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1441)
+|+++..|+++++.. ++..+
T Consensus 209 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~---------------- 228 (491)
T PRK10982 209 DGQWIATQPLAGLTM--------------------------------------------DKIIA---------------- 228 (491)
T ss_pred CCEEEeecChhhCCH--------------------------------------------HHHHH----------------
Confidence 999998876542100 00000
Q ss_pred CcccccccccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCccccchhhhH
Q 000529 480 TPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAG 559 (1441)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g 559 (1441)
+ +. + ..
T Consensus 229 -------------------------------~-----------------------------~~--~--~~---------- 234 (491)
T PRK10982 229 -------------------------------M-----------------------------MV--G--RS---------- 234 (491)
T ss_pred -------------------------------H-----------------------------Hh--C--CC----------
Confidence 0 00 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccCCCCChhHHHHH
Q 000529 560 ALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQ 639 (1441)
Q Consensus 560 ~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~ 639 (1441)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHhHcHHHHHHHHHHHhhhcCC
Q 000529 640 YLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGH 719 (1441)
Q Consensus 640 ~l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~ 719 (1441)
.
T Consensus 235 ---------------------------------------------------~---------------------------- 235 (491)
T PRK10982 235 ---------------------------------------------------L---------------------------- 235 (491)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred CCccccCCCccchhHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccccccccccC
Q 000529 720 SWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGG 799 (1441)
Q Consensus 720 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~v~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1441)
.. .. .
T Consensus 236 --~~----------------------------------------------------~~---------------------~ 240 (491)
T PRK10982 236 --TQ----------------------------------------------------RF---------------------P 240 (491)
T ss_pred --cc----------------------------------------------------cc---------------------c
Confidence 00 00 0
Q ss_pred cccccCCCCCCCCCcccCCCCcccccccCCCCCCCccccCCCceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEE
Q 000529 800 TVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAF 879 (1441)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i 879 (1441)
.. . . .. .+..+.++|+++. .+.+|+|||+++
T Consensus 241 ------------~~------~----~----~~--------~~~~i~~~~l~~~---------------~~~~l~~vsl~i 271 (491)
T PRK10982 241 ------------DK------E----N----KP--------GEVILEVRNLTSL---------------RQPSIRDVSFDL 271 (491)
T ss_pred ------------cc------c----C----CC--------CCcEEEEeCcccc---------------cCcccceeeEEE
Confidence 00 0 0 00 0013566676643 124899999999
Q ss_pred eCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcc----ccceEEEEeccCCC---CCCCCCHHHHHHH
Q 000529 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE----TFARISGYCEQNDI---HSPFVTVYESLFY 952 (1441)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~---~~~~lTv~E~l~f 952 (1441)
++||++||+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|+.. +++.+|+.++..+
T Consensus 272 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 349 (491)
T PRK10982 272 HKGEILGIAGLVGAKRTDIVETLFGIREK--SAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLI 349 (491)
T ss_pred eCCcEEEEecCCCCCHHHHHHHHcCCCcC--CccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheeh
Confidence 99999999999999999999999998753 479999999876431 12445899999853 5778888777433
Q ss_pred HHH--hcCCCC-CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCH
Q 000529 953 SAW--LRLPPE-VNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028 (1441)
Q Consensus 953 ~~~--lr~~~~-~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~ 1028 (1441)
... ...... ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+||||||||+|||+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~ 424 (491)
T PRK10982 350 SNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI-----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDV 424 (491)
T ss_pred hhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc-----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccCh
Confidence 210 000001 12223345678899999995 4556654 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCC
Q 000529 1029 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1029 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1082 (1441)
.++..+++.|+++.++|.|||++|||++ ++.+.||++++|++ |+++..++..
T Consensus 425 ~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 425 GAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 9999999999999888999999999986 57789999999985 8999877654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-60 Score=592.57 Aligned_cols=447 Identities=19% Similarity=0.261 Sum_probs=331.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCC--C--
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNH--I-- 238 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~--~-- 238 (1441)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.. +
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 5899999999999999999999999999999999999998 9999999977643321 2458999997532 1
Q ss_pred ----CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccc
Q 000529 239 ----GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADT 314 (1441)
Q Consensus 239 ----~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1441)
..+||+|++.+.. +...+++.+++.+||++..++
T Consensus 94 ~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~l~~~~~~ 131 (490)
T PRK10938 94 GEDDTGRTTAEIIQDEV------------------------------------------KDPARCEQLAQQFGITALLDR 131 (490)
T ss_pred chhhccccHHHhcccch------------------------------------------hHHHHHHHHHHHcCCHhhhhC
Confidence 1457777664310 001235678999999988888
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
.+++ |||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++.+ . +.+|+.++|+.+++.++||+
T Consensus 132 ~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tvii~tH~~~~~~~~~d~ 204 (490)
T PRK10938 132 RFKY-----LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-S-GITLVLVLNRFDEIPDFVQF 204 (490)
T ss_pred Cccc-----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCE
Confidence 8877 999999999999999999999999999999999999999999998754 3 56677788999999999999
Q ss_pred EEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHHhchhhhhh
Q 000529 395 IILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKL 474 (1441)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1441)
|++|++|+++.+|+++++.+. +.+. .
T Consensus 205 v~~l~~G~i~~~~~~~~~~~~---------------~~~~-------------------------~-------------- 230 (490)
T PRK10938 205 AGVLADCTLAETGEREEILQQ---------------ALVA-------------------------Q-------------- 230 (490)
T ss_pred EEEEECCEEEEeCCHHHHhcc---------------hhhh-------------------------h--------------
Confidence 999999999999887654210 0000 0
Q ss_pred HhhhcCcccccccccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCccccc
Q 000529 475 SDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDG 554 (1441)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~ 554 (1441)
.. . .+ .... .
T Consensus 231 ---~~--------~---------------------~~---------------------------------~~~~--~--- 240 (490)
T PRK10938 231 ---LA--------H---------------------SE---------------------------------QLEG--V--- 240 (490)
T ss_pred ---hh--------h---------------------hh---------------------------------ccCc--c---
Confidence 00 0 00 0000 0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccCCCCChh
Q 000529 555 GIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAG 634 (1441)
Q Consensus 555 ~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~ 634 (1441)
T Consensus 241 -------------------------------------------------------------------------------- 240 (490)
T PRK10938 241 -------------------------------------------------------------------------------- 240 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHhHcHHHHHHHHHHHh
Q 000529 635 RFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILAN 714 (1441)
Q Consensus 635 rf~~~~l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~n 714 (1441)
..|
T Consensus 241 -------------------------------------------------------~~~---------------------- 243 (490)
T PRK10938 241 -------------------------------------------------------QLP---------------------- 243 (490)
T ss_pred -------------------------------------------------------ccC----------------------
Confidence 000
Q ss_pred hhcCCCCccccCCCccchhHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccc
Q 000529 715 EFLGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQD 794 (1441)
Q Consensus 715 ef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~v~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~ 794 (1441)
.. .
T Consensus 244 -------~~-------------------------------------------------------------------~--- 246 (490)
T PRK10938 244 -------EP-------------------------------------------------------------------D--- 246 (490)
T ss_pred -------cc-------------------------------------------------------------------c---
Confidence 00 0
Q ss_pred ccccCcccccCCCCCCCCCcccCCCCcccccccCCCCCCCccccCCCceeeEeceEEEEeccchhhccCCCCCceeeeec
Q 000529 795 NRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNG 874 (1441)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 874 (1441)
. .. . .... .. ....++++|+++.++ ++.+|+|
T Consensus 247 ----~------------~~------~---~~~~--~~--------~~~~l~~~~l~~~~~-------------~~~il~~ 278 (490)
T PRK10938 247 ----E------------PS------A---RHAL--PA--------NEPRIVLNNGVVSYN-------------DRPILHN 278 (490)
T ss_pred ----c------------cc------c---cccc--CC--------CCceEEEeceEEEEC-------------CeeEEee
Confidence 0 00 0 0000 00 011377888887652 2469999
Q ss_pred eeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc----cccceEEEEeccCCCCCC--CCCHHH
Q 000529 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ----ETFARISGYCEQNDIHSP--FVTVYE 948 (1441)
Q Consensus 875 vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~--~lTv~E 948 (1441)
+||++++||+++|+||||||||||+++|+|.... ..+|+|.++|.+... ...++.+||++|++.+.+ ..|+++
T Consensus 279 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 357 (490)
T PRK10938 279 LSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRN 357 (490)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHH
Confidence 9999999999999999999999999999996431 137999999976421 123456999999876543 256777
Q ss_pred HHHHHHHh--cCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCC
Q 000529 949 SLFYSAWL--RLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025 (1441)
Q Consensus 949 ~l~f~~~l--r~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsg 1025 (1441)
++.+.... ....... ...++.++++++.++|.+ ..++.++ .|||||||||+||+||+.+|++|+|||||+|
T Consensus 358 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~la~al~~~p~lllLDEPt~g 431 (490)
T PRK10938 358 VILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFH-----SLSWGQQRLALIVRALVKHPTLLILDEPLQG 431 (490)
T ss_pred HHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 66543211 1111111 223456889999999987 7777644 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcC-CEEEEEecCCcHHHHH-hhCeEEEEecCcEEEEEc
Q 000529 1026 LDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-AFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1026 LD~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~i~~-~~D~vllL~~gG~~v~~G 1079 (1441)
||+.++..+++.|++++++| .|||++||+++ ++.+ .+|++++|++ |++++.-
T Consensus 432 LD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~~ 485 (490)
T PRK10938 432 LDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRYV 485 (490)
T ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEee
Confidence 99999999999999998775 47999999986 4555 5899999985 7776653
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=514.87 Aligned_cols=470 Identities=25% Similarity=0.340 Sum_probs=365.6
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCcceEEEECCeeCCCCCcc-------ceEEEEcC
Q 000529 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP--SLKVSGRVTYNGHNMDEFVPE-------RTAAYISQ 233 (1441)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~--~~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q 233 (1441)
....++++||+.+++||.++|+|.||||||-..+.+.|+++. ....+|+|.|+|.++-....+ ..|++|+|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 456799999999999999999999999999999999999976 245689999999997654432 36999999
Q ss_pred CC--CCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccc
Q 000529 234 HD--NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDIC 311 (1441)
Q Consensus 234 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1441)
++ .+-|-.|+...|.-..++... + .+.+.+.++-++|+..|+.+.
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg---------~------------------------~~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRG---------L------------------------SRAAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhc---------c------------------------cHHHHHHHHHHHHHHcCCCch
Confidence 97 466777888888776665421 1 122234567788999999876
Q ss_pred cccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhh
Q 000529 312 ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL 391 (1441)
Q Consensus 312 ~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l 391 (1441)
.... +.+...|||||||||.||.||+.+|++|+.||||++||-....+|.++|+++.. .-+..++.|+|+..-+-++
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~-~~gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA-ELGMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHH-HhCcEEEEEeccHHHHHHh
Confidence 5443 345567999999999999999999999999999999999999999999999865 4578888899999999999
Q ss_pred cCeEEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHHhchhh
Q 000529 392 FDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVG 471 (1441)
Q Consensus 392 ~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1441)
+|+|+||.+|++|++|+.+.+.. .|.+ |
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------p------------------- 252 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQH-------------------------P------------------- 252 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------h-------------------
Confidence 99999999999999999876632 1111 0
Q ss_pred hhhHhhhcCcccccccccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCcc
Q 000529 472 QKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSV 551 (1441)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~ 551 (1441)
|. |.++ +.
T Consensus 253 -------------------------YT------------r~Ll------------------------------~a----- 260 (534)
T COG4172 253 -------------------------YT------------RKLL------------------------------AA----- 260 (534)
T ss_pred -------------------------HH------------HHHH------------------------------hc-----
Confidence 00 0000 00
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccCCCC
Q 000529 552 TDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDP 631 (1441)
Q Consensus 552 ~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~ 631 (1441)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHhHcHHHHHHHHH
Q 000529 632 NAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGI 711 (1441)
Q Consensus 632 ~~~rf~~~~l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al 711 (1441)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhcCCCCccccCCCccchhHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccc
Q 000529 712 LANEFLGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESD 791 (1441)
Q Consensus 712 ~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~v~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~ 791 (1441)
|-.+
T Consensus 261 ---eP~g------------------------------------------------------------------------- 264 (534)
T COG4172 261 ---EPSG------------------------------------------------------------------------- 264 (534)
T ss_pred ---CCCC-------------------------------------------------------------------------
Confidence 0000
Q ss_pred cccccccCcccccCCCCCCCCCcccCCCCcccccccCCCCCCCccccCCCceeeEeceEEEEeccchhhccCCCCCceee
Q 000529 792 EQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVL 871 (1441)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 871 (1441)
. . .+.+ +..+.-+..+|+...++.+..+-.. ..+...+
T Consensus 265 -------~--------------~------------~p~~-------~~~~~ll~~~~v~v~f~i~~g~~~r--~~~~~~A 302 (534)
T COG4172 265 -------D--------------P------------PPLP-------EDAPVLLEVEDLRVWFPIKGGFLRR--TVDHLRA 302 (534)
T ss_pred -------C--------------C------------CCCC-------CCCCceEEecceEEEEecCCccccc--cchheEE
Confidence 0 0 0000 0011234444444444333211100 1134579
Q ss_pred eeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc------cccceEEEEeccCCC--CCCC
Q 000529 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ------ETFARISGYCEQNDI--HSPF 943 (1441)
Q Consensus 872 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~--~~~~ 943 (1441)
+++||+++++||.+||+|.||||||||=.+|.+...+ +|.|.++|.++.. ...++.+-.|+||+. +.|.
T Consensus 303 Vd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPR 379 (534)
T COG4172 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR 379 (534)
T ss_pred eccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcc
Confidence 9999999999999999999999999999999997753 5999999998753 235677899999985 6799
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCC
Q 000529 944 VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1022 (1441)
Q Consensus 944 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEP 1022 (1441)
+||.|-+.=+.....| ..+..++++++.++|+.+||++- ++++ +.++|||||||++|||||+.+|++++||||
T Consensus 380 mtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RY-----PhEFSGGQRQRIAIARAliLkP~~i~LDEP 453 (534)
T COG4172 380 MTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRY-----PHEFSGGQRQRIAIARALILKPELILLDEP 453 (534)
T ss_pred cCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcC-----CcccCcchhhHHHHHHHHhcCCcEEEecCC
Confidence 9999988776665544 45778899999999999999874 3433 467999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1023 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1023 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
||+||-.-+.+|.++||++.++ |.+-++++||.. -+-.+||+++||++ |++|+.||.
T Consensus 454 TSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 454 TSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred chHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeC-CEEeeeCCH
Confidence 9999999999999999999754 999999999986 47778999999985 899999996
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-58 Score=580.11 Aligned_cols=201 Identities=22% Similarity=0.318 Sum_probs=163.4
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|...+ .+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECC-c-
Confidence 478889887652 34699999999999999999999999999999999998653 479999843 1
Q ss_pred CccccceEEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHH
Q 000529 923 KQETFARISGYCEQND-IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTEQ 1000 (1441)
Q Consensus 923 ~~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGq 1000 (1441)
..+||++|+. .+++.+||.|++.+...... .... +...+++++.+++.+ ..++.++ .|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKVG-----VLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCchh-----hCCHHH
Confidence 1489999986 67788999999987643221 1111 123457899999964 4566543 699999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEE-EEc
Q 000529 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV-YVG 1079 (1441)
Q Consensus 1001 rqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v-~~G 1079 (1441)
||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. | |||++||++. .+.+.||++++|++||++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 4 8999999986 5778899999998767776 455
Q ss_pred C
Q 000529 1080 P 1080 (1441)
Q Consensus 1080 ~ 1080 (1441)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-58 Score=578.49 Aligned_cols=198 Identities=18% Similarity=0.253 Sum_probs=163.9
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 488899987763 24699999999999999999999999999999999998653 4799999873
Q ss_pred CccccceEEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHH
Q 000529 923 KQETFARISGYCEQNDI--HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTE 999 (1441)
Q Consensus 923 ~~~~~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgG 999 (1441)
+.+||++|+.. +.+.+|++|++.+.. ... ..++.++++++.+++. +..+..++ .||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QEG-----DDEQAVRGTLGRLLFSQDDIKKSVK-----VLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cCC-----ccHHHHHHHHHHcCCChhHhcCccc-----ccCHH
Confidence 45899999864 456799999986421 111 1134578899999994 56666644 69999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEE-EE
Q 000529 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV-YV 1078 (1441)
Q Consensus 1000 qrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v-~~ 1078 (1441)
||||++||++|+.+|+||+|||||+|||+.+...+++.|+++ +.|||++|||+. .+.+.||++++|++ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999886 459999999986 57778999999986 6776 77
Q ss_pred cCC
Q 000529 1079 GPL 1081 (1441)
Q Consensus 1079 G~~ 1081 (1441)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-57 Score=567.98 Aligned_cols=201 Identities=20% Similarity=0.296 Sum_probs=163.0
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++.+. ++.+|+|||++|++|++++|+||||||||||+++|+|...+ .+|+|.+++ +
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~-~- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGE-T- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECC-c-
Confidence 478889887652 34699999999999999999999999999999999998653 479999844 1
Q ss_pred CccccceEEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHH
Q 000529 923 KQETFARISGYCEQND-IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTEQ 1000 (1441)
Q Consensus 923 ~~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGq 1000 (1441)
..+||++|+. .+++.+||.|++.+...... .... +..+.++++.+++.+ ..++.++ .|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKVG-----QLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCchh-----hCCHHH
Confidence 1489999986 47788999999987643211 1111 123457899999964 4566543 599999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEE-EEc
Q 000529 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV-YVG 1079 (1441)
Q Consensus 1001 rqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v-~~G 1079 (1441)
||||+||++|+.+|++|||||||+|||+.++..+++.|+++. .|||++||++. .+.+.+|++++|++||+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999986 4777899999998667776 444
Q ss_pred C
Q 000529 1080 P 1080 (1441)
Q Consensus 1080 ~ 1080 (1441)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-56 Score=555.11 Aligned_cols=211 Identities=20% Similarity=0.238 Sum_probs=172.3
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++.++ + ..|+++|++|++||++||+||||||||||+++|+|..++ .+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe----
Confidence 377888876542 2 248999999999999999999999999999999998653 47999875
Q ss_pred CccccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000529 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1441)
Q Consensus 923 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1002 (1441)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.++|.+..++.++ .|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNVK-----DLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCcc-----cCCHHHHH
Confidence 1489999998888889999999875211 111 1246789999999987787754 59999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1003 Rv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
||+||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++||+. .+...+|++++|+ |++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--Ccceeeeec
Confidence 999999999999999999999999999999999999999764 899999999986 4777899999995 477777775
Q ss_pred CCc---chhHHHHHHhC
Q 000529 1082 GHH---SCHLISYFEAI 1095 (1441)
Q Consensus 1082 ~~~---~~~~~~yf~~~ 1095 (1441)
... ...+..|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 322 13345566666
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=552.94 Aligned_cols=197 Identities=22% Similarity=0.358 Sum_probs=160.4
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.++ ++.+|+|+|++|++|+++||+|||||||||||++|+|...+ .+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP--VSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCC--
Confidence 478889887653 35699999999999999999999999999999999998653 4799988641
Q ss_pred CccccceEEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHH
Q 000529 923 KQETFARISGYCEQND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTE 999 (1441)
Q Consensus 923 ~~~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgG 999 (1441)
..+||++|+. .+.+..|+.+++.- . .. ......+.++++.+++.. ..++.++ .||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~~----~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--AP----QELEQKLRDYLGGFGFQGDKVTEETR-----RFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--Cc----hhhHHHHHHHHHHcCCChhHhcCchh-----hCCHH
Confidence 2589999974 34455677776531 1 11 122345788999999964 5666654 59999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEE-EE
Q 000529 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV-YV 1078 (1441)
Q Consensus 1000 qrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v-~~ 1078 (1441)
|||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ . .|||++|||+. .+...||++++|++ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 3 49999999986 47788999999985 7876 88
Q ss_pred cCC
Q 000529 1079 GPL 1081 (1441)
Q Consensus 1079 G~~ 1081 (1441)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 875
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-54 Score=550.51 Aligned_cols=202 Identities=24% Similarity=0.336 Sum_probs=162.3
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.++ ++.+|+|||++|++|+++||+|||||||||||++|+|...+ .+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE-CCCc
Confidence 478889887652 34699999999999999999999999999999999998653 4799988 4321
Q ss_pred CccccceEEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHH
Q 000529 923 KQETFARISGYCEQND-IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQ 1000 (1441)
Q Consensus 923 ~~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGq 1000 (1441)
.+||++|+. .+++.+||.|++.+..... ... .....+.++++.+++. +..++.++ .|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPVK-----ALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChhh-----hCCHHH
Confidence 489999975 5778899999997753211 111 1123467889999985 45566654 599999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEE-EEEc
Q 000529 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE-VYVG 1079 (1441)
Q Consensus 1001 rqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~-v~~G 1079 (1441)
||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+...||++++|+++|++ .|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999876 459999999976 477789999999733555 4556
Q ss_pred CC
Q 000529 1080 PL 1081 (1441)
Q Consensus 1080 ~~ 1081 (1441)
..
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 54
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=513.47 Aligned_cols=451 Identities=22% Similarity=0.336 Sum_probs=352.9
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCcc----ceEEEEcCCCCCC
Q 000529 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHI 238 (1441)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1441)
...++|+|||+.++|||+++|+|.||||||||+|+|+|.++|+ +|+|.+||++.....++ .-|+.|.|+..+.
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~ 95 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLV 95 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhcc
Confidence 4568999999999999999999999999999999999999998 99999999998765553 4589999999999
Q ss_pred CCCCHHHHHHHHhHhcC-CCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccc
Q 000529 239 GEMTVRETLAFAARCQG-VGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~-~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1441)
|+|||.|||.++..... .+. .+..+....+..+|+.+|++...++.|+
T Consensus 96 p~LsVaeNifLgre~~~~~g~-------------------------------id~~~m~~~A~~~l~~lg~~~~~~~~v~ 144 (500)
T COG1129 96 PNLSVAENIFLGREPTRRFGL-------------------------------IDRKAMRRRARELLARLGLDIDPDTLVG 144 (500)
T ss_pred CCccHHHHhhcccccccCCCc-------------------------------cCHHHHHHHHHHHHHHcCCCCChhhhhh
Confidence 99999999998754332 000 1112234456788999999766899998
Q ss_pred cccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000529 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1441)
Q Consensus 318 ~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vil 397 (1441)
+ ||+||||-|.||||+..++++++||||||+|+...+..+++.++++. .++..++.|+|..+|++++||||.|
T Consensus 145 ~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk--~~Gv~ii~ISHrl~Ei~~i~DritV 217 (500)
T COG1129 145 D-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK--AQGVAIIYISHRLDEVFEIADRITV 217 (500)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEcCcHHHHHHhcCEEEE
Confidence 8 99999999999999999999999999999999999999999999974 4678888999999999999999999
Q ss_pred ecCCeEEEEcCH-HHHHHHHHhcCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHHhchhhhhhHh
Q 000529 398 LSDGQIVYQGPR-ELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSD 476 (1441)
Q Consensus 398 L~~G~iv~~G~~-~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1441)
|.||+++..++. .+.- .++.
T Consensus 218 lRDG~~v~~~~~~~~~~--------------------------------------------~~~l--------------- 238 (500)
T COG1129 218 LRDGRVVGTRPTAAETS--------------------------------------------EDEL--------------- 238 (500)
T ss_pred EeCCEEeeecccccCCC--------------------------------------------HHHH---------------
Confidence 999999876652 2110 0000
Q ss_pred hhcCcccccccccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCccccchh
Q 000529 477 ELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGI 556 (1441)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~ 556 (1441)
.
T Consensus 239 ----------------------------v--------------------------------------------------- 239 (500)
T COG1129 239 ----------------------------V--------------------------------------------------- 239 (500)
T ss_pred ----------------------------H---------------------------------------------------
Confidence 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccCCCCChhHH
Q 000529 557 YAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRF 636 (1441)
Q Consensus 557 ~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf 636 (1441)
-.|+|-
T Consensus 240 -------------------------------------------------------------------~~MvGr------- 245 (500)
T COG1129 240 -------------------------------------------------------------------RLMVGR------- 245 (500)
T ss_pred -------------------------------------------------------------------HHhhCc-------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHhHcHHHHHHHHHHHhhh
Q 000529 637 FKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEF 716 (1441)
Q Consensus 637 ~~~~l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef 716 (1441)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccCCCccchhHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccccc
Q 000529 717 LGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNR 796 (1441)
Q Consensus 717 ~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~v~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1441)
..+. .
T Consensus 246 ---~~~~------------------~------------------------------------------------------ 250 (500)
T COG1129 246 ---ELED------------------L------------------------------------------------------ 250 (500)
T ss_pred ---chhh------------------h------------------------------------------------------
Confidence 0000 0
Q ss_pred ccCcccccCCCCCCCCCcccCCCCcccccccCCCCCCCccccCCCceeeEeceEEEEeccchhhccCCCCCceeeeecee
Q 000529 797 IGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVS 876 (1441)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs 876 (1441)
. +. . ... ...+..+++++++. ...++|||
T Consensus 251 -----------------------~---~~-~-~~~------~~~~~~l~v~~l~~-----------------~~~~~dvS 279 (500)
T COG1129 251 -----------------------F---PE-P-PEE------GIGEPVLEVRNLSG-----------------GGKVRDVS 279 (500)
T ss_pred -----------------------c---cc-c-ccc------CCCCcEEEEecCCC-----------------CCceeCce
Confidence 0 00 0 000 00011244444331 12578999
Q ss_pred EEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcc----ccceEEEEeccCC---CCCCCCCHHHH
Q 000529 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE----TFARISGYCEQND---IHSPFVTVYES 949 (1441)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~lTv~E~ 949 (1441)
|++++||++||-|-=|||+|-|+++|.|... ...|+|.+||.+.... ..+.-++||+.|. -+++.++|.||
T Consensus 280 f~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~N 357 (500)
T COG1129 280 FTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAEN 357 (500)
T ss_pred eEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHh
Confidence 9999999999999999999999999999544 3479999999986532 2445689999864 46788999999
Q ss_pred HHHHHHhcCC-C-CCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCC
Q 000529 950 LFYSAWLRLP-P-EVNSETRKMFIEEVMELVELKPL-RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026 (1441)
Q Consensus 950 l~f~~~lr~~-~-~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgL 1026 (1441)
+.++...+.. . -.+....++.+++..+.+++... .+..+ ..||||.+|||.|||.|..+|+||+|||||.|+
T Consensus 358 i~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGI 432 (500)
T COG1129 358 ITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI-----GTLSGGNQQKVVLARWLATDPKVLILDEPTRGI 432 (500)
T ss_pred eehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-----hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCc
Confidence 9887332221 1 24555566678899999998643 33443 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1027 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1027 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
|.-++.+|.+++++++++|++||++|-+.. |+..+||||++|.+ |+++-.=+.
T Consensus 433 DVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e~~~ 485 (500)
T COG1129 433 DVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGELDR 485 (500)
T ss_pred ccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEEecc
Confidence 999999999999999999999999999985 79999999999985 888764443
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-52 Score=531.60 Aligned_cols=200 Identities=18% Similarity=0.269 Sum_probs=157.3
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.++ +++.+|+|+||+|++|++++|+|||||||||||++|+|...+ .+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECCc--
Confidence 478899988763 123699999999999999999999999999999999998653 4799988652
Q ss_pred CccccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHH
Q 000529 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTEQR 1001 (1441)
Q Consensus 923 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqr 1001 (1441)
..+||++|+. .+.+++.++..+......+ ... ++.+.++++.+++.+ ..+..+ ..||||||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPM-----YTLSGGQK 633 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCc-----cccCHHHH
Confidence 3589999975 2345666664322111111 111 245778999999974 455554 46999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEE-EEcC
Q 000529 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV-YVGP 1080 (1441)
Q Consensus 1002 qRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v-~~G~ 1080 (1441)
|||+||++|+.+|++|+|||||+|||+.+...+++.|++. . .|||++|||+. .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999998888765 3 49999999986 47778999999985 7887 7776
Q ss_pred C
Q 000529 1081 L 1081 (1441)
Q Consensus 1081 ~ 1081 (1441)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 4
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-50 Score=489.13 Aligned_cols=221 Identities=28% Similarity=0.343 Sum_probs=172.9
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCccceEEEEcCCCCCCCCCC
Q 000529 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1441)
..+++|+|+|+.+.+|+.++|+|+||||||||||+|+|...|+ +|+|...+ .-+++|++|++...+..|
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~t 82 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKT 82 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCcc
Confidence 3567999999999999999999999999999999999999998 99998765 247999999999998999
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHH----hhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK----AASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~----~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
|.+.+.-+..- .++...+... .....++++...... ....++-+.+.++..++.-||++.. ++.+++
T Consensus 83 v~~~v~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~ 153 (530)
T COG0488 83 VLDYVIEGFGE-----LRELLAELEE---AYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSS 153 (530)
T ss_pred HHHHHHhhhHH-----HHHHHHHHHH---HHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhh
Confidence 99999876532 1122222111 111122221111111 0111223445678889999999887 888887
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
||||||.||++|++|+.+|++|+|||||++||..+..++-+.|++ ..+ ++|+++|++...-+.|++|+-+
T Consensus 154 -----LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~----~~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 154 -----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR----YPG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCC-cEEEEeCCHHHHHHHhhheEEe
Confidence 999999999999999999999999999999999999999999975 234 7777999999999999999999
Q ss_pred cCCeEE-EEcCHHHHH
Q 000529 399 SDGQIV-YQGPRELVL 413 (1441)
Q Consensus 399 ~~G~iv-~~G~~~~~~ 413 (1441)
+.|++. |.|.++...
T Consensus 224 d~g~l~~y~Gny~~~~ 239 (530)
T COG0488 224 DRGKLTPYKGNYSSYL 239 (530)
T ss_pred cCCceeEecCCHHHHH
Confidence 999875 677776543
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-50 Score=465.77 Aligned_cols=458 Identities=21% Similarity=0.297 Sum_probs=359.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCcc----ceEEEEcCCCCCCC
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHIG 239 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1441)
...+++|||+++++||+.+|+|.||||||||+++|.|.+.|+ +|+|.++|+++.-..|+ --||+|.||..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 577999999999999999999999999999999999999999 99999999998765553 35999999999999
Q ss_pred CCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccc
Q 000529 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1441)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1441)
++||.|||..+..-... .+ ....+...+++.+.+.+||+--.|..|++
T Consensus 93 ~lTV~ENiiLg~e~~~~-~~------------------------------~~~~~~~~~i~~l~~~yGl~vdp~~~V~d- 140 (501)
T COG3845 93 TLTVAENIILGLEPSKG-GL------------------------------IDRRQARARIKELSERYGLPVDPDAKVAD- 140 (501)
T ss_pred ccchhhhhhhcCccccc-cc------------------------------cCHHHHHHHHHHHHHHhCCCCCccceeec-
Confidence 99999999998643210 00 01122345577889999999999999998
Q ss_pred cccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000529 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1441)
Q Consensus 320 ~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~ 399 (1441)
||=||||||.|-++|+.+|++|+|||||+-|-|....++++.|++++. .+.+|+.|+|-..|+.++|||+.||.
T Consensus 141 ----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~--~G~tIi~ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA--EGKTIIFITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeccHHHHHHhhCeeEEEe
Confidence 999999999999999999999999999999999999999999999864 56777889999999999999999999
Q ss_pred CCeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHHhchhhhhhHhhhc
Q 000529 400 DGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQ 479 (1441)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1441)
.|+++-.-++. + + .+.+++++.
T Consensus 215 ~Gkvvgt~~~~--------------~--------------------------~---~t~~ela~l--------------- 236 (501)
T COG3845 215 RGKVVGTVDPV--------------A--------------------------E---TTEEELAEL--------------- 236 (501)
T ss_pred CCeEEeeecCC--------------C--------------------------C---CCHHHHHHH---------------
Confidence 99986432100 0 0 000000000
Q ss_pred CcccccccccccccCcccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCccccchhhhH
Q 000529 480 TPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAG 559 (1441)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g 559 (1441)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhHHHhhhcCCcChhhHHHHHHHHHhhHHHHHHHHHHHHHhhccCCCCChhHHHHH
Q 000529 560 ALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQ 639 (1441)
Q Consensus 560 ~lf~~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~ 639 (1441)
|+|
T Consensus 237 ------------------------------------------------------------------MvG----------- 239 (501)
T COG3845 237 ------------------------------------------------------------------MVG----------- 239 (501)
T ss_pred ------------------------------------------------------------------hcC-----------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHhHcHHHHHHHHHHHhhhcCC
Q 000529 640 YLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGH 719 (1441)
Q Consensus 640 ~l~~~~~~~~~~~l~~~i~a~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~ 719 (1441)
+
T Consensus 240 -------------------------------------------------------------------------------~ 240 (501)
T COG3845 240 -------------------------------------------------------------------------------R 240 (501)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCccccCCCccchhHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccccccccccC
Q 000529 720 SWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGG 799 (1441)
Q Consensus 720 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~v~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1441)
.-.. .
T Consensus 241 ~v~~---------------------------------------------------------------------------~ 245 (501)
T COG3845 241 EVVL---------------------------------------------------------------------------R 245 (501)
T ss_pred cccc---------------------------------------------------------------------------c
Confidence 0000 0
Q ss_pred cccccCCCCCCCCCcccCCCCcccccccCCCCCCCccccCCCceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEE
Q 000529 800 TVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAF 879 (1441)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i 879 (1441)
... .+...+ +..++++|++..-. .+...+++|||++
T Consensus 246 ------------~~~--------------~~~~pg------~~vL~V~~L~v~~~------------~~~~~v~~vs~~V 281 (501)
T COG3845 246 ------------VVK--------------PPSTPG------EVVLEVEDLSVKDR------------RGVTAVKDVSFEV 281 (501)
T ss_pred ------------ccc--------------CCCCCC------CeEEEEeeeEeecC------------CCCceeeeeeeEE
Confidence 000 000000 12467777764422 1246899999999
Q ss_pred eCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC-C---ccc-cceEEEEeccCCC---CCCCCCHHHHHH
Q 000529 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK-K---QET-FARISGYCEQNDI---HSPFVTVYESLF 951 (1441)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~-~---~~~-~~~~~gyv~Q~~~---~~~~lTv~E~l~ 951 (1441)
++||++||.|..|-|-+.|+.+|+|..+. ..|+|.++|.+. . ... .+.-++|||.|.. +.+.+|+.||+.
T Consensus 282 r~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~v 359 (501)
T COG3845 282 RAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLV 359 (501)
T ss_pred ecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhh
Confidence 99999999999999999999999997653 349999999986 2 222 2345899999864 467899999998
Q ss_pred HHHHhcCC----CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCC
Q 000529 952 YSAWLRLP----PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027 (1441)
Q Consensus 952 f~~~lr~~----~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD 1027 (1441)
+...-+.| .-.+....++...++++.+++....-. ...+.||||++||+-+||+|..+|++|+..+||.|||
T Consensus 360 L~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLD 435 (501)
T COG3845 360 LGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD----APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLD 435 (501)
T ss_pred hhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----cchhhcCCcceehhhhhhhhccCCCEEEEcCCCcccc
Confidence 76543211 124556677888999999998733211 1135699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCCC
Q 000529 1028 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1441)
Q Consensus 1028 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~~ 1083 (1441)
..+.+.|.+.|.+.++.|+.|++++-+.+ ++++++|+|.+|.+ |+++...++.+
T Consensus 436 vgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~~ 489 (501)
T COG3845 436 VGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPEE 489 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceeccccccc
Confidence 99999999999999999999999999997 79999999999985 89998888754
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=378.32 Aligned_cols=214 Identities=25% Similarity=0.361 Sum_probs=188.7
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|++.++ +...+|+|||++|++||+++|+|||||||||||+||.|+.. +.+|+|.++|.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 5667776554 46789999999999999999999999999999999999876 34799999997543
Q ss_pred c----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000529 924 Q----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1441)
Q Consensus 924 ~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 999 (1441)
. ...|+.+|+|+|+..+||++||.||+.++-..- ...++++.++...+.|+.+||.+.+|.+. .+||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcH
Confidence 2 346788999999999999999999998875432 23566777788899999999999999874 469999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1000 qrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
|||||+|||||+.+|+++++|||||+|||+...++.+.+++++++|.|.||+||++.. ..+.+|||+.|+ +|+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd-~G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMD-QGKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEee-CCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999874 667899999998 58999999
Q ss_pred CC
Q 000529 1080 PL 1081 (1441)
Q Consensus 1080 ~~ 1081 (1441)
++
T Consensus 219 ~p 220 (240)
T COG1126 219 PP 220 (240)
T ss_pred CH
Confidence 76
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=371.75 Aligned_cols=221 Identities=27% Similarity=0.409 Sum_probs=191.5
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCC----CccceEEEEcCCCCCC
Q 000529 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF----VPERTAAYISQHDNHI 238 (1441)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~----~~~~~~~yv~Q~d~~~ 238 (1441)
....+|+|||++|++||+++|+|||||||||||++|.|+..++ +|+|.++|.++... ..|+.+|+|+|+.++|
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLF 89 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeeccccccc
Confidence 3567999999999999999999999999999999999999998 99999999876421 2357899999999999
Q ss_pred CCCCHHHHHHHHhHh-cCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccc
Q 000529 239 GEMTVRETLAFAARC-QGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1441)
|++||.||+..+..- ++ ..++++...+.++|+.+||.+.+|.++.
T Consensus 90 PHlTvleNv~lap~~v~~----------------------------------~~k~eA~~~A~~lL~~VGL~~ka~~yP~ 135 (240)
T COG1126 90 PHLTVLENVTLAPVKVKK----------------------------------LSKAEAREKALELLEKVGLADKADAYPA 135 (240)
T ss_pred ccchHHHHHHhhhHHHcC----------------------------------CCHHHHHHHHHHHHHHcCchhhhhhCcc
Confidence 999999999987532 11 1123344567789999999999999887
Q ss_pred cccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000529 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1441)
Q Consensus 318 ~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vil 397 (1441)
. |||||||||+|||||+.+|+++++|||||+|||....++.+.+++++. .+.+.++++|.+..+.+.+|||+.
T Consensus 136 q-----LSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~--eGmTMivVTHEM~FAr~VadrviF 208 (240)
T COG1126 136 Q-----LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE--EGMTMIIVTHEMGFAREVADRVIF 208 (240)
T ss_pred c-----cCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH--cCCeEEEEechhHHHHHhhheEEE
Confidence 6 999999999999999999999999999999999999999999999975 457777799999999999999999
Q ss_pred ecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHh
Q 000529 398 LSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE 435 (1441)
Q Consensus 398 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~ 435 (1441)
|++|+++.+|+++++ |..|.+....+||..
T Consensus 209 md~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 209 MDQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred eeCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 999999999999876 355666666667654
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=392.22 Aligned_cols=200 Identities=19% Similarity=0.241 Sum_probs=153.6
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.++. +..++++++|.|.+++.+|++||||+|||||||++.|...+ ..|.|.-.-+
T Consensus 389 vi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H-- 452 (614)
T KOG0927|consen 389 VIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSH-- 452 (614)
T ss_pred eEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--cccccccccc--
Confidence 5788888876642 22589999999999999999999999999999999997763 4566643221
Q ss_pred CccccceEEEEeccC--CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCcCCHH
Q 000529 923 KQETFARISGYCEQN--DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-QSLVGLPGVNGLSTE 999 (1441)
Q Consensus 923 ~~~~~~~~~gyv~Q~--~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LSgG 999 (1441)
.++++-.|+ +.+.-..++.|+++=. ...+.+.+.+..++..+||.... +.. .++||+|
T Consensus 453 ------~~~~~y~Qh~~e~ldl~~s~le~~~~~--------~~~~~~~e~~r~ilgrfgLtgd~q~~p-----~~~LS~G 513 (614)
T KOG0927|consen 453 ------NKLPRYNQHLAEQLDLDKSSLEFMMPK--------FPDEKELEEMRSILGRFGLTGDAQVVP-----MSQLSDG 513 (614)
T ss_pred ------ccchhhhhhhHhhcCcchhHHHHHHHh--------ccccchHHHHHHHHHHhCCCccccccc-----hhhcccc
Confidence 112333332 2222345666665311 11133455678899999998544 333 4579999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1000 qrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
||+||..|+.++..|.||+|||||+|||..+...+-+.|.+. ..+||+++||... |-+.++++.+..+++...+.|
T Consensus 514 qr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G 589 (614)
T KOG0927|consen 514 QRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDG 589 (614)
T ss_pred cchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCc
Confidence 999999999999999999999999999999999999999775 4689999999874 788899999999988899998
Q ss_pred CC
Q 000529 1080 PL 1081 (1441)
Q Consensus 1080 ~~ 1081 (1441)
..
T Consensus 590 ~i 591 (614)
T KOG0927|consen 590 DI 591 (614)
T ss_pred cH
Confidence 75
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=378.59 Aligned_cols=219 Identities=24% Similarity=0.324 Sum_probs=191.2
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+++++|+..+... ..+...+|+|||++|++||++||+|.||||||||++++.++..+ .+|+|.++|.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P--tsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEEcCEecc
Confidence 4677776444321 11345799999999999999999999999999999999998764 5899999997654
Q ss_pred c------cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000529 924 Q------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1441)
Q Consensus 924 ~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 997 (1441)
. ...|+.+|+++|+..++...||.||+.|...+.. .++++++++|.++++.+||.+.++... .+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYP-----AQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccCc-----hhcC
Confidence 3 2357889999999999999999999999987763 567889999999999999999888874 4799
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEE
Q 000529 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1441)
Q Consensus 998 gGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v 1076 (1441)
|||||||+|||||+.+|+||++|||||+|||++.+.|.++|+++.++ |.||+++||+++ -+-+.|||+.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999986 37779999999985 8999
Q ss_pred EEcCCC
Q 000529 1077 YVGPLG 1082 (1441)
Q Consensus 1077 ~~G~~~ 1082 (1441)
..|+..
T Consensus 222 E~G~v~ 227 (339)
T COG1135 222 EEGTVS 227 (339)
T ss_pred EeccHH
Confidence 999974
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=377.35 Aligned_cols=224 Identities=27% Similarity=0.370 Sum_probs=197.9
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc------cceEEEEcCCCC
Q 000529 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDN 236 (1441)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 236 (1441)
+..++|+|||+.|++||+.+|+|+||||||||++++.++-.|+ +|+|.++|.++..+.. |+.+|+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 4578999999999999999999999999999999999999999 9999999998876643 478999999999
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccc
Q 000529 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1441)
++...||.||++|+.+..+.+ +++.+.++.++|+.+||++.+|..+
T Consensus 94 LLssrTV~~NvA~PLeiag~~----------------------------------k~ei~~RV~elLelVgL~dk~~~yP 139 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVP----------------------------------KAEIKQRVAELLELVGLSDKADRYP 139 (339)
T ss_pred ccccchHHhhhhhhHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhccCc
Confidence 999999999999998877531 2334567889999999999999988
Q ss_pred ccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEE
Q 000529 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1441)
Q Consensus 317 g~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vi 396 (1441)
.+ |||||||||+|||||+.+|+||+.|||||+|||.|+..|++.|++..+ .-+.+|+.++|.++-+-++||||.
T Consensus 140 ~q-----LSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~-~lglTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 140 AQ-----LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINR-ELGLTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred hh-----cCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHH-HcCCEEEEEechHHHHHHHhhhhe
Confidence 76 999999999999999999999999999999999999999999999865 456778889999999999999999
Q ss_pred EecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHhhc
Q 000529 397 LLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVT 437 (1441)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~ 437 (1441)
+|++|+++++|+..++. ..|.+.-.-+|+.+..
T Consensus 214 vm~~G~lvE~G~v~~vF--------~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 214 VLDQGRLVEEGTVSEVF--------ANPKHAITQEFIGETL 246 (339)
T ss_pred EeeCCEEEEeccHHHhh--------cCcchHHHHHHHHhhc
Confidence 99999999999998873 4455554555655443
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=362.76 Aligned_cols=230 Identities=25% Similarity=0.370 Sum_probs=198.9
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+++++++.+. +++.+|+|||++|++||+++||||||+||||||++|.|..++ .+|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcch
Confidence 57788887654 567899999999999999999999999999999999998774 489999999986
Q ss_pred Cc------cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCc
Q 000529 923 KQ------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-RQSLVGLPGVNG 995 (1441)
Q Consensus 923 ~~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~ 995 (1441)
.+ ...++.+|+++|+-.+|..+||+||+.|..+ .....+++..++.+..-|+.+||... .+.. +.+
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 43 1356789999999999999999999998653 33446677778888889999999887 6655 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 996 LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
||||+|||++|||||+.+|+|||+||||+||||.++..+-++|+++.+. |.|++++|||.+ +++..+|++++|.+ |+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gk 223 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GK 223 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999876 999999999997 58999999999985 89
Q ss_pred EEEEcCCCC----cchhHHHHHHhCC
Q 000529 1075 EVYVGPLGH----HSCHLISYFEAIP 1096 (1441)
Q Consensus 1075 ~v~~G~~~~----~~~~~~~yf~~~~ 1096 (1441)
+++.|++.+ ....+.+||....
T Consensus 224 v~~~Gt~~el~~sd~P~v~qf~~G~~ 249 (263)
T COG1127 224 VIAEGTPEELLASDDPWVRQFFNGIR 249 (263)
T ss_pred EEEeCCHHHHHhCCCHHHHHHhcCCC
Confidence 999999853 2245667887654
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=417.55 Aligned_cols=216 Identities=23% Similarity=0.353 Sum_probs=186.8
Q ss_pred ceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCcc
Q 000529 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1441)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 921 (1441)
..++++|++..++. +++.+|+|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCEE
Confidence 36888998877631 235799999999999999999999999999999999998763 48999999988
Q ss_pred CCc--cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000529 922 KKQ--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1441)
Q Consensus 922 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 999 (1441)
+.. ...++.+|||+|++.+++.+||+|++.|.++++. ...++.+++++++++.+||.+..++.++ .||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEAQ-----DLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHH
Confidence 643 2345679999999999999999999999876653 2234445678999999999988888754 59999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1000 qrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
|||||+||+||+.+|+||+|||||+|||+.+++.+++.|++++ +|+|||++||+++ ++..++|++++|++ |+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999995 5999999999986 57778999999985 8999999
Q ss_pred CC
Q 000529 1080 PL 1081 (1441)
Q Consensus 1080 ~~ 1081 (1441)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 85
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=393.22 Aligned_cols=217 Identities=30% Similarity=0.443 Sum_probs=197.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCcc-ceEEEEcCCCCCCCCCCHHH
Q 000529 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-RTAAYISQHDNHIGEMTVRE 245 (1441)
Q Consensus 167 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 245 (1441)
+|+|+|++|++||+++|+|||||||||||++|||+.+|+ +|+|.++|.++++..|+ |.+|+|+|+..++|+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999998 99999999999998775 78999999999999999999
Q ss_pred HHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCCC
Q 000529 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1441)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 325 (1441)
|++|+.+.++.. +++.+.+++++.+.|+|++..|+.+.. ||
T Consensus 95 Niaf~Lk~~~~~----------------------------------k~ei~~rV~eva~~L~l~~lL~r~P~~-----LS 135 (338)
T COG3839 95 NIAFGLKLRGVP----------------------------------KAEIDKRVKEVAKLLGLEHLLNRKPLQ-----LS 135 (338)
T ss_pred HhhhhhhhCCCc----------------------------------hHHHHHHHHHHHHHcCChhHHhcCccc-----CC
Confidence 999999887541 223456788999999999999998866 99
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEE
Q 000529 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVY 405 (1441)
Q Consensus 326 GGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~iv~ 405 (1441)
|||||||++||||+.+|++++||||+|.||...+.++...++++ |+.-++++|.++|+..|+..++|||++|++|++..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~l-h~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKL-HERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHH-HHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999999999999885 55667888889999999999999999999999999
Q ss_pred EcCHHHHHHHHHhcCCCCCCCCChhhHHH
Q 000529 406 QGPRELVLEFFESMGFKCPKRKGVADFLQ 434 (1441)
Q Consensus 406 ~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 434 (1441)
.|++.++. ..|.+.-+|+|+-
T Consensus 215 ~g~p~ely--------~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLELY--------ERPANLFVAGFIG 235 (338)
T ss_pred cCChHHHh--------hCccchhhhhhcC
Confidence 99999984 4577777777754
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=372.28 Aligned_cols=218 Identities=25% Similarity=0.391 Sum_probs=185.8
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|++++++. + ++|+|||+++++|++++|+||||||||||+|+|.|..+ +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~~------------~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYGN------------R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEECC------------E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 5789999988741 2 59999999999999999999999999999999999766 3589999999887
Q ss_pred CccccceEEEEeccCCCC--CCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000529 923 KQETFARISGYCEQNDIH--SPFVTVYESLFYSAWLRLPP-EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1441)
Q Consensus 923 ~~~~~~~~~gyv~Q~~~~--~~~lTv~E~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 999 (1441)
.+..-+..+|||||...+ ..-+||+|-+..+..-+... ....++.++.++++|+.+|+.+++|+.+|. ||||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~-----LSGG 143 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGE-----LSGG 143 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccc-----cCcH
Confidence 654435679999995432 22389999998764333211 112233467899999999999999999874 9999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1000 qrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
|+|||.|||||+++|++|+|||||+|+|+.++..++++|++++++|+||++++||++ .+.+.||++++|+ +++++.|
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G 220 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASG 220 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEecc
Confidence 999999999999999999999999999999999999999999988999999999998 5889999999996 5899999
Q ss_pred CCCC
Q 000529 1080 PLGH 1083 (1441)
Q Consensus 1080 ~~~~ 1083 (1441)
++.+
T Consensus 221 ~~~~ 224 (254)
T COG1121 221 PPEE 224 (254)
T ss_pred Chhh
Confidence 9864
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=391.11 Aligned_cols=222 Identities=30% Similarity=0.434 Sum_probs=192.6
Q ss_pred eeEeceEEEEeccchhhccCCCCC-ceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPED-KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
+.++|++..+ + ++.+|+||||+|++||++||+||||||||||||+|+|...+ .+|+|.++|.+.
T Consensus 5 i~~~~l~k~~-------------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~ 69 (293)
T COG1131 5 IEVRNLTKKY-------------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDV 69 (293)
T ss_pred eeecceEEEe-------------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeC
Confidence 5566776554 3 46899999999999999999999999999999999998764 589999999887
Q ss_pred Cc--cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000529 923 KQ--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1441)
Q Consensus 923 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1000 (1441)
.. ...++.+||++|++.+++.+||+|+|.|.+.++.+.. +..+++++++++.++|.+.+++++ ++||+||
T Consensus 70 ~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~ 141 (293)
T COG1131 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKV-----RTLSGGM 141 (293)
T ss_pred ccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHH
Confidence 54 3567789999999999999999999999999986542 445667999999999998666654 4699999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1001 rqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
||||+||+||+++|++|||||||+||||.++..+++.|++++++| +||+++||+++ ++...||+|++|++ |++++.|
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g 219 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEG 219 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeC
Confidence 999999999999999999999999999999999999999999887 89999999997 68888999999985 8999999
Q ss_pred CCCCcchhHHHHHHh
Q 000529 1080 PLGHHSCHLISYFEA 1094 (1441)
Q Consensus 1080 ~~~~~~~~~~~yf~~ 1094 (1441)
+. .++...+..
T Consensus 220 ~~----~~l~~~~~~ 230 (293)
T COG1131 220 TP----EELKEKFGG 230 (293)
T ss_pred CH----HHHHHhhcc
Confidence 76 345554443
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=375.35 Aligned_cols=219 Identities=28% Similarity=0.399 Sum_probs=189.1
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++.+|+++.++ ++.+|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|.++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCch
Confidence 367888888763 56899999999999999999999999999999999997763 479999999987
Q ss_pred Cc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP-EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 998 (1441)
.. ..+++.++|+||.....+.+||+|.+.++..-+... ....++.++.++++|+.+|+.+++++.+. .|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccCh
Confidence 54 456789999999998888999999998874322211 11233444579999999999999998864 5999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
||||||.|||||+++|+||+||||||.||...+.+++++++++++ +|+|||+++||++. ...+||++++|++ |+++.
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEe
Confidence 999999999999999999999999999999999999999999985 59999999999985 7789999999984 89999
Q ss_pred EcCCCC
Q 000529 1078 VGPLGH 1083 (1441)
Q Consensus 1078 ~G~~~~ 1083 (1441)
.|++.+
T Consensus 220 ~G~p~e 225 (258)
T COG1120 220 QGTPEE 225 (258)
T ss_pred ecCcch
Confidence 999854
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=365.51 Aligned_cols=204 Identities=25% Similarity=0.374 Sum_probs=179.6
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++++++++. ...+|+|||++|.+||+++|+||||||||||||+|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccc
Confidence 366777776653 36799999999999999999999999999999999998774 489999999987
Q ss_pred CccccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000529 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1441)
Q Consensus 923 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1002 (1441)
.. ....+|||+|++.++|.+||+||+.|+...+. .+.+++++++++.|+.+||.+..|.. +.+|||||||
T Consensus 68 ~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 TG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred CC--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 32 34568999999999999999999999877653 34566677899999999999999987 4579999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 1003 Rv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
||+|||||+.+|+||+||||+++||+.|+..+++.|.++.+ .++|||++|||.+ |...+.|||++|.++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999865 4899999999987 677789999999863
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=360.07 Aligned_cols=208 Identities=27% Similarity=0.423 Sum_probs=187.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCC
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 240 (1441)
++++++|+|++|++||+++++|||||||||+||+|.++.+|+ +|+|.+||+++.+.+. ||.+|||-|+-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 567999999999999999999999999999999999999998 9999999999987654 6899999999999999
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc--cccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI--CADTMVGD 318 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~ 318 (1441)
+||.|||++-..+++.. +++.+.+++++|+.+||+. .+++.+.+
T Consensus 90 ~Tv~eNIa~VP~L~~w~----------------------------------k~~i~~r~~ELl~lvgL~p~~~~~RyP~e 135 (309)
T COG1125 90 LTVAENIATVPKLLGWD----------------------------------KERIKKRADELLDLVGLDPSEYADRYPHE 135 (309)
T ss_pred ccHHHHHHhhhhhcCCC----------------------------------HHHHHHHHHHHHHHhCCCHHHHhhcCchh
Confidence 99999999977766531 2334567899999999974 77777765
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
|||||+|||.+||||+.+|++++||||+++|||-++.++.+.++++-+ .-+++|+.++|+.+|++.++|||++|
T Consensus 136 -----LSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~-~l~kTivfVTHDidEA~kLadri~vm 209 (309)
T COG1125 136 -----LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQK-ELGKTIVFVTHDIDEALKLADRIAVM 209 (309)
T ss_pred -----cCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHH-HhCCEEEEEecCHHHHHhhhceEEEe
Confidence 999999999999999999999999999999999999999999988744 45677777999999999999999999
Q ss_pred cCCeEEEEcCHHHHHH
Q 000529 399 SDGQIVYQGPRELVLE 414 (1441)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1441)
++|+++..|++++++.
T Consensus 210 ~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 210 DAGEIVQYDTPDEILA 225 (309)
T ss_pred cCCeEEEeCCHHHHHh
Confidence 9999999999999874
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=390.67 Aligned_cols=223 Identities=30% Similarity=0.430 Sum_probs=201.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-cceEEEEcCCCCCCCCCC
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 242 (1441)
...+|+|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.++|++++...+ +|.+++|+|+-.+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 567999999999999999999999999999999999999999 9999999999998877 478999999999999999
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1441)
|+||++|+++.++.. .+++.+.+++++|+.++|++.++..+.+
T Consensus 94 V~~NVafGLk~~~~~---------------------------------~~~~i~~rv~e~L~lV~L~~~~~R~p~q---- 136 (352)
T COG3842 94 VEENVAFGLKVRKKL---------------------------------KKAEIKARVEEALELVGLEGFADRKPHQ---- 136 (352)
T ss_pred HHHHhhhhhhhcCCC---------------------------------CHHHHHHHHHHHHHHcCchhhhhhChhh----
Confidence 999999998844311 1123456789999999999999998876
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 GLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~ 402 (1441)
|||||+|||++||||+.+|++|+||||.|+||..-+.++...++++.+. .+.+.|.++|+..|++.++|||++|++|+
T Consensus 137 -LSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~-~giT~i~VTHDqeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 137 -LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRE-LGITFVYVTHDQEEALAMSDRIAVMNDGR 214 (352)
T ss_pred -hChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHhhhccceEEccCCc
Confidence 9999999999999999999999999999999999999999999988664 47778889999999999999999999999
Q ss_pred EEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHhh
Q 000529 403 IVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436 (1441)
Q Consensus 403 iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 436 (1441)
|...|+++++ |..|...-+|||+-+.
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999998 4578888889998754
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=360.67 Aligned_cols=214 Identities=26% Similarity=0.359 Sum_probs=190.3
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++|+||+..+ +++.+++|+|++|++||+++++|||||||||+|++|.+...+ .+|+|.+||.++.
T Consensus 2 I~~~nvsk~y-------------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRY-------------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhc-------------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecc
Confidence 4677777544 356799999999999999999999999999999999998764 5899999999876
Q ss_pred c---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCcCCH
Q 000529 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP--LRQSLVGLPGVNGLST 998 (1441)
Q Consensus 924 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~LSg 998 (1441)
. ...||.+|||-|...+||++||.||+.+--.+. ..++++.+++++|+|+++||.+ +++++ +++|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 357889999999999999999999998765553 4577888899999999999985 66766 467999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
||+|||.+||||+++|+||+||||+++|||-++..+++.++++.++ |+|||++|||.+ +.+.++||+.+|+ +|+++.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEE
Confidence 9999999999999999999999999999999999999999999765 999999999987 7889999999998 589999
Q ss_pred EcCCC
Q 000529 1078 VGPLG 1082 (1441)
Q Consensus 1078 ~G~~~ 1082 (1441)
++++.
T Consensus 217 ~~~P~ 221 (309)
T COG1125 217 YDTPD 221 (309)
T ss_pred eCCHH
Confidence 99873
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=356.54 Aligned_cols=222 Identities=26% Similarity=0.331 Sum_probs=188.2
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|++-.++ +++++|+|||++|++||++||+|||||||||||++|.|... +.+|+|.++|.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 477888876553 45789999999999999999999999999999999999765 4579999999765
Q ss_pred Cc------cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000529 923 KQ------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-----PEVNSETRKMFIEEVMELVELKPLRQSLVGLP 991 (1441)
Q Consensus 923 ~~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 991 (1441)
.. ..+++.+||++|+..+.+.++|.+|+..+..-+.+ -....++.+..+-++|+.+|+.+.+-++.+
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-- 146 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-- 146 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc--
Confidence 32 24578899999999999999999999876432221 122334455567789999999999888755
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 992 ~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
.|||||+|||+|||||+.+|+||+.|||+++|||.+++.||+.|+++++ .|.|||++.||.+. ..++|||++-|+
T Consensus 147 ---~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 147 ---TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred ---cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 5999999999999999999999999999999999999999999999975 49999999999874 678999999998
Q ss_pred cCcEEEEEcCCCCcc
Q 000529 1071 RGGREVYVGPLGHHS 1085 (1441)
Q Consensus 1071 ~gG~~v~~G~~~~~~ 1085 (1441)
+ |+++|.||..+..
T Consensus 223 ~-G~ivfDg~~~el~ 236 (258)
T COG3638 223 A-GRIVFDGPASELT 236 (258)
T ss_pred C-CcEEEeCChhhhh
Confidence 5 8999999986543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=359.49 Aligned_cols=193 Identities=29% Similarity=0.443 Sum_probs=167.9
Q ss_pred eeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc------ccc-ceEEEEeccCCCCC
Q 000529 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ------ETF-ARISGYCEQNDIHS 941 (1441)
Q Consensus 869 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~-~~~~gyv~Q~~~~~ 941 (1441)
..+|++||++|++||++||||||||||||||++|.|..++ .+|.+.++|.+... ..+ ++.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 5799999999999999999999999999999999998764 57999999977542 123 45799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccc-ccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEe
Q 000529 942 PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ-SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020 (1441)
Q Consensus 942 ~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLD 1020 (1441)
|.+||.||+.+...+... .....++.++++++.+||.+..+ ++ +.+|||||||||+|||||+.+|+||+.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 999999999987765432 22255667889999999997666 54 3469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 1021 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 1021 EPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
|||.+||+.++..|++++++++++ |+|||++|||| ++...|||++.|.+ |+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD-GK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeC-Ce
Confidence 999999999999999999999865 99999999997 57889999999986 55
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=365.88 Aligned_cols=224 Identities=29% Similarity=0.461 Sum_probs=192.1
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCe---eCCCCCc-cceEEEEcCCCCCC
Q 000529 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGH---NMDEFVP-ERTAAYISQHDNHI 238 (1441)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~---~~~~~~~-~~~~~yv~Q~d~~~ 238 (1441)
....+++|||+.|+.||+++++|||||||||||++|||+..|+ +|.|.+||. +.+.... .|.+|||+|+-.+|
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 3456899999999999999999999999999999999999998 999999999 6555333 47899999999999
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
+.|||.+||+|+.+++.. + | ...+.+.+++++|+.+.|++.++.++-.
T Consensus 90 ~HmtVa~NIAFGl~~~~~--~-----------------p-------------~~~~~r~rv~elL~lvqL~~la~ryP~Q 137 (345)
T COG1118 90 PHMTVADNIAFGLKVRKE--R-----------------P-------------SEAEIRARVEELLRLVQLEGLADRYPAQ 137 (345)
T ss_pred ccchHHhhhhhccccccc--C-----------------C-------------ChhhHHHHHHHHHHHhcccchhhcCchh
Confidence 999999999999987621 0 1 1223456788899999999999988765
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
|||||||||++||||+..|++|+||||+++||...+..+-+.|+++.. .-+.+.+.++|+.+|++++||||++|
T Consensus 138 -----LSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~-~~~~ttvfVTHD~eea~~ladrvvvl 211 (345)
T COG1118 138 -----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHD-RLGVTTVFVTHDQEEALELADRVVVL 211 (345)
T ss_pred -----cChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHH-hhCceEEEEeCCHHHHHhhcceEEEe
Confidence 999999999999999999999999999999999999999999998744 44666677999999999999999999
Q ss_pred cCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHh
Q 000529 399 SDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE 435 (1441)
Q Consensus 399 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~ 435 (1441)
++|+|...||++++. ..|...-+..|+-+
T Consensus 212 ~~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G~ 240 (345)
T COG1118 212 NQGRIEQVGPPDEVY--------DHPASRFVARFLGE 240 (345)
T ss_pred cCCeeeeeCCHHHHh--------cCCCccceeccccc
Confidence 999999999999985 34555555555443
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=360.38 Aligned_cols=194 Identities=27% Similarity=0.403 Sum_probs=174.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCccceEEEEcCCCCCCCCCCHH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1441)
.++|+|+|++|.+||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++. .+...++||+|++.++|.+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 67999999999999999999999999999999999999998 999999999883 3567899999999999999999
Q ss_pred HHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCC
Q 000529 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1441)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 324 (1441)
||+.|+.+.++.. +.+...+++..|+.+||....|..+.. |
T Consensus 91 ~NV~l~l~~~~~~----------------------------------~~e~~~~a~~~L~~VgL~~~~~~~P~q-----L 131 (248)
T COG1116 91 DNVALGLELRGKS----------------------------------KAEARERAKELLELVGLAGFEDKYPHQ-----L 131 (248)
T ss_pred hhheehhhccccc----------------------------------hHhHHHHHHHHHHHcCCcchhhcCccc-----c
Confidence 9999998876521 112233678899999999999998876 9
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC--Ce
Q 000529 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD--GQ 402 (1441)
Q Consensus 325 SGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~--G~ 402 (1441)
||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.+. .+.+|+.++|+.+|+..++|||++|++ |+
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~-~~~TvllVTHdi~EAv~LsdRivvl~~~P~~ 210 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE-TRKTVLLVTHDVDEAVYLADRVVVLSNRPGR 210 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh-hCCEEEEEeCCHHHHHhhhCEEEEecCCCcc
Confidence 999999999999999999999999999999999999999999887764 567777799999999999999999998 45
Q ss_pred E
Q 000529 403 I 403 (1441)
Q Consensus 403 i 403 (1441)
|
T Consensus 211 i 211 (248)
T COG1116 211 I 211 (248)
T ss_pred e
Confidence 5
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=368.12 Aligned_cols=210 Identities=32% Similarity=0.469 Sum_probs=183.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCcc---ceEEEEcCCCCCCCC
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE---RTAAYISQHDNHIGE 240 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~ 240 (1441)
++++|+|+|+.+++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.++..+ +.+|||||.....+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 457999999999999999999999999999999999999998 99999999999877653 789999999888889
Q ss_pred CCHHHHHHHHhHhc-CCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccc
Q 000529 241 MTVRETLAFAARCQ-GVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1441)
Q Consensus 241 lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1441)
+||+|-+.++..-. +. .+ ...++....++.+|+.+|+.+.+++.+.+
T Consensus 91 ~tV~d~V~~GR~p~~~~-------------------~~------------~~~~~D~~~v~~aL~~~~~~~la~r~~~~- 138 (258)
T COG1120 91 LTVYELVLLGRYPHLGL-------------------FG------------RPSKEDEEIVEEALELLGLEHLADRPVDE- 138 (258)
T ss_pred cEEeehHhhcCCccccc-------------------cc------------CCCHhHHHHHHHHHHHhCcHHHhcCcccc-
Confidence 99999999974321 10 00 00111223678899999999999999987
Q ss_pred cccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000529 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1441)
Q Consensus 320 ~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~ 399 (1441)
|||||||||.|||||+.+|++|+||||||+||...+.++++.++++.+. .+.+|++++|+.+.+..+||++++|+
T Consensus 139 ----LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~-~~~tvv~vlHDlN~A~ryad~~i~lk 213 (258)
T COG1120 139 ----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE-KGLTVVMVLHDLNLAARYADHLILLK 213 (258)
T ss_pred ----cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999998764 45666778899999999999999999
Q ss_pred CCeEEEEcCHHHHH
Q 000529 400 DGQIVYQGPRELVL 413 (1441)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1441)
+|+++.+|++++++
T Consensus 214 ~G~i~a~G~p~evl 227 (258)
T COG1120 214 DGKIVAQGTPEEVL 227 (258)
T ss_pred CCeEEeecCcchhc
Confidence 99999999998875
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=350.35 Aligned_cols=210 Identities=26% Similarity=0.374 Sum_probs=183.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc------cceEEEEcCCCC
Q 000529 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDN 236 (1441)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 236 (1441)
..+.||+|||++|++||+++|+|||||||||||++|.|+++|+ +|+|.++|+++..... ++++|+++|+-.
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 4567999999999999999999999999999999999999998 9999999999876543 467999999999
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccc-cccc
Q 000529 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDIC-ADTM 315 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~ 315 (1441)
+|..+||+||+.|..+-... + .+...+..+..-|+..||... +|.+
T Consensus 96 LFssltV~eNVafplre~~~---------l------------------------p~~~i~~lv~~KL~~VGL~~~~~~~~ 142 (263)
T COG1127 96 LFSSLTVFENVAFPLREHTK---------L------------------------PESLIRELVLMKLELVGLRGAAADLY 142 (263)
T ss_pred cccccchhHhhheehHhhcc---------C------------------------CHHHHHHHHHHHHHhcCCChhhhhhC
Confidence 99999999999997754321 1 111223445556888999877 7777
Q ss_pred cccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
+.+ ||||+|||+++|||++.+|+++|+||||+||||.++..+.++++++.+. -+.++++++|+.++++..+|+|
T Consensus 143 PsE-----LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~-lg~T~i~VTHDl~s~~~i~Drv 216 (263)
T COG1127 143 PSE-----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDA-LGLTVIMVTHDLDSLLTIADRV 216 (263)
T ss_pred chh-----hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh-hCCEEEEEECChHHHHhhhceE
Confidence 776 9999999999999999999999999999999999999999999988664 4667777999999999999999
Q ss_pred EEecCCeEEEEcCHHHHHH
Q 000529 396 ILLSDGQIVYQGPRELVLE 414 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1441)
++|.+|+|+.+|+++++.+
T Consensus 217 ~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 217 AVLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999864
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=381.53 Aligned_cols=212 Identities=33% Similarity=0.471 Sum_probs=187.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCC--CccceEEEEcCCCCCCCCC
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF--VPERTAAYISQHDNHIGEM 241 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~l 241 (1441)
.+.+|+|||+++++|++++|+||||||||||||+|+|++.|+ +|+|.++|.+.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 468999999999999999999999999999999999999998 99999999987652 3357899999999999999
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1441)
||+|||.|.+++.+... .....+++++++.+||++.+++.+++
T Consensus 94 T~~e~l~~~~~l~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~~--- 136 (293)
T COG1131 94 TVRENLEFFARLYGLSK----------------------------------EEAEERIEELLELFGLEDKANKKVRT--- 136 (293)
T ss_pred cHHHHHHHHHHHhCCCh----------------------------------hHHHHHHHHHHHHcCCchhhCcchhh---
Confidence 99999999998876421 01224578899999999866666655
Q ss_pred cCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000529 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1441)
Q Consensus 322 rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G 401 (1441)
||+||||||+||.||+++|++|||||||+|||+.++.++.+.|++++. .++++|+..+|..+++..+||+|++|++|
T Consensus 137 --lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~-~g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 137 --LSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAK-EGGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred --cCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHh-CCCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999875 34467777889999999999999999999
Q ss_pred eEEEEcCHHHHHHHHHh
Q 000529 402 QIVYQGPRELVLEFFES 418 (1441)
Q Consensus 402 ~iv~~G~~~~~~~~f~~ 418 (1441)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999998765543
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=345.02 Aligned_cols=202 Identities=28% Similarity=0.375 Sum_probs=184.7
Q ss_pred eeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc--cccceEEEEeccCCCCCCCCCH
Q 000529 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ--ETFARISGYCEQNDIHSPFVTV 946 (1441)
Q Consensus 869 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 946 (1441)
.++++||||+++.||++||+|+|||||||+|++|++...+ .+|.|++||.+..+ ...++.+|.++.+..++..+|+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 3489999999999999999999999999999999998774 48999999998643 3467889999988888999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCC
Q 000529 947 YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026 (1441)
Q Consensus 947 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgL 1026 (1441)
+|||.|.+++. +...++.+++++++.+.++|.++.|+.+| ++|.|+||||+|||||+++|++++||||||||
T Consensus 93 rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 93 RENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 99999999886 35567778899999999999999999987 59999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCC
Q 000529 1027 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1027 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1082 (1441)
|..+...+.+.++++.+.|++||++||.++ ++..+||++++|++ |++++.|+..
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~ 218 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIE 218 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHH
Confidence 999999999999999988999999999986 68889999999985 8999999873
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=362.91 Aligned_cols=206 Identities=30% Similarity=0.456 Sum_probs=185.9
Q ss_pred CceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCc---cCCc-cccceEEEEeccCCCCCC
Q 000529 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY---PKKQ-ETFARISGYCEQNDIHSP 942 (1441)
Q Consensus 867 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~gyv~Q~~~~~~ 942 (1441)
+...+++|||+.|+.||++||+|||||||||||++|+|..++ ..|.|.+||. +.++ ....|.+|||+|+..+++
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 456789999999999999999999999999999999998874 4899999999 5544 334678999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCC
Q 000529 943 FVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1022 (1441)
Q Consensus 943 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEP 1022 (1441)
++||.||+.|+...+ ....+..+.+.+++++|+.+.|++..+.+ +.+|||||||||++||||+.+|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998777 33345667788899999999999999987 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCC
Q 000529 1023 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1023 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1082 (1441)
+++||+.-+.++.+.|+++.++ |.|+|++|||+. +.++.+|+|++|++ |++...||+.
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 9999999999999999999876 999999999986 79999999999985 8999999874
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=337.16 Aligned_cols=214 Identities=26% Similarity=0.324 Sum_probs=183.3
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.|+||+..|+ .++++|+||||+|++||++-|+||||||||||||+|.+... +..|+|.++|+++.
T Consensus 2 I~f~~V~k~Y~------------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYP------------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcC------------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 46777765543 23569999999999999999999999999999999999765 34799999999864
Q ss_pred cc------ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000529 924 QE------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1441)
Q Consensus 924 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 997 (1441)
.. -.+|++|+|+||..+.+..||+||+.|...... .+..+.+++|.++|+.+||.+.++.+ +.+||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 31 257899999999999999999999999877653 35567788899999999999988876 45799
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 998 gGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
|||||||+||||++.+|++|+.||||.+|||..+.+||+++.++.+.|.|||+.|||.+. +...-.+++.|.+ |+++.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~~-Grl~~ 217 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALED-GRLVR 217 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEeC-CEEEe
Confidence 999999999999999999999999999999999999999999999999999999999642 3344567888874 89887
Q ss_pred EcCC
Q 000529 1078 VGPL 1081 (1441)
Q Consensus 1078 ~G~~ 1081 (1441)
....
T Consensus 218 d~~~ 221 (223)
T COG2884 218 DESR 221 (223)
T ss_pred cccc
Confidence 6543
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=340.81 Aligned_cols=211 Identities=31% Similarity=0.363 Sum_probs=187.5
Q ss_pred CccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC--ccceEEEEcCCCCC
Q 000529 160 STKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNH 237 (1441)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~ 237 (1441)
+.+....+++||||.++.||+++|+|||||||||+|++|++++.|+ +|+|+++|.+..+.+ .++.+|.++.+..+
T Consensus 10 ~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~gl 86 (245)
T COG4555 10 SYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGL 86 (245)
T ss_pred hccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcCh
Confidence 3344456999999999999999999999999999999999999999 999999999876543 36889999987889
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccc
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1441)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1441)
+..||++|||.|.+++.+.. ..+.+.+++.+.+.|+|.+|.|+.+|
T Consensus 87 Y~RlT~rEnl~~Fa~L~~l~----------------------------------~~~~kari~~l~k~l~l~~~~~rRv~ 132 (245)
T COG4555 87 YARLTARENLKYFARLNGLS----------------------------------RKEIKARIAELSKRLQLLEYLDRRVG 132 (245)
T ss_pred hhhhhHHHHHHHHHHHhhhh----------------------------------hhHHHHHHHHHHHHhChHHHHHHHHh
Confidence 99999999999998876531 12344568889999999999999999
Q ss_pred cccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000529 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1441)
Q Consensus 318 ~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vil 397 (1441)
+ +|-|+||||+|||||+.+|+++++||||||||..++..+.+.++++. ..+.+|+..+|.++|+.++||+|++
T Consensus 133 ~-----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k--~egr~viFSSH~m~EvealCDrviv 205 (245)
T COG4555 133 E-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK--NEGRAVIFSSHIMQEVEALCDRVIV 205 (245)
T ss_pred h-----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh--cCCcEEEEecccHHHHHHhhheEEE
Confidence 7 99999999999999999999999999999999999999999998863 4467778889999999999999999
Q ss_pred ecCCeEEEEcCHHHHHH
Q 000529 398 LSDGQIVYQGPRELVLE 414 (1441)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (1441)
|++|++|+.|+.+++.+
T Consensus 206 lh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 206 LHKGEVVLEGSIEALDA 222 (245)
T ss_pred EecCcEEEcCCHHHHHH
Confidence 99999999999988754
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=355.94 Aligned_cols=207 Identities=29% Similarity=0.446 Sum_probs=178.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCccceEEEEcCCC--CCCCCCCH
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHD--NHIGEMTV 243 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d--~~~~~lTV 243 (1441)
++|+|||+.+++|++++|+||||||||||+|+|+|+++|. +|+|.++|.+......+.++|||||.. .+-..+||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 5999999999999999999999999999999999999998 999999999887766667899999963 34445899
Q ss_pred HHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccC
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1441)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 323 (1441)
+|.+..+..-+. + ...... ++.+..++++|+.+|+.+.+|..+|+
T Consensus 95 ~d~V~~g~~~~~-g----~~~~~~-------------------------~~d~~~v~~aL~~Vgm~~~~~r~i~~----- 139 (254)
T COG1121 95 KDVVLLGRYGKK-G----WFRRLN-------------------------KKDKEKVDEALERVGMEDLRDRQIGE----- 139 (254)
T ss_pred HHHHHccCcccc-c----cccccc-------------------------HHHHHHHHHHHHHcCchhhhCCcccc-----
Confidence 999998732221 0 000011 11234688999999999999999998
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000529 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1441)
Q Consensus 324 LSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~i 403 (1441)
|||||+|||-|||||+++|++|+|||||+|+|+.++..|++.|+++.+ . +.+|++++|+...+.++||+|+.| ++++
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~-e-g~tIl~vtHDL~~v~~~~D~vi~L-n~~~ 216 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-E-GKTVLMVTHDLGLVMAYFDRVICL-NRHL 216 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCcHHhHhhCCEEEEE-cCee
Confidence 999999999999999999999999999999999999999999999865 3 677788999999999999999999 4688
Q ss_pred EEEcCHHHHH
Q 000529 404 VYQGPRELVL 413 (1441)
Q Consensus 404 v~~G~~~~~~ 413 (1441)
++.|+++++.
T Consensus 217 ~~~G~~~~~~ 226 (254)
T COG1121 217 IASGPPEEVL 226 (254)
T ss_pred EeccChhhcc
Confidence 9999999875
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=373.71 Aligned_cols=215 Identities=28% Similarity=0.393 Sum_probs=191.9
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|++.++. +..+|+|||++|++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 467777775542 2229999999999999999999999999999999999876 4589999999988
Q ss_pred Cc-cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000529 923 KQ-ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1441)
Q Consensus 923 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1001 (1441)
+. ...+|.+++|+|+..++|++||+||+.|+.+++. .++++.+++|+++.+.++|.+..|++. ++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhH
Confidence 76 3456889999999999999999999999987763 456778889999999999999999884 57999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcC
Q 000529 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1441)
Q Consensus 1002 qRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~ 1080 (1441)
|||+|||||+++|++++||||.|+||+..+..+...|+++.++ |.|+|.+|||.. +.+.++|++++|+ +|++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999999765 899999999974 7889999999998 589999998
Q ss_pred CC
Q 000529 1081 LG 1082 (1441)
Q Consensus 1081 ~~ 1082 (1441)
+.
T Consensus 218 p~ 219 (338)
T COG3839 218 PL 219 (338)
T ss_pred hH
Confidence 74
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=351.70 Aligned_cols=196 Identities=28% Similarity=0.437 Sum_probs=170.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-------cceEEEEcCCCC
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDN 236 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1441)
..++|+++|+.|++||+++|+|||||||||||++|+|+..|+ +|.|.++|.++..+.. ++.+|||+|+..
T Consensus 17 ~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n 93 (226)
T COG1136 17 KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN 93 (226)
T ss_pred ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC
Confidence 378999999999999999999999999999999999999998 9999999999876643 357999999999
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccc-cc
Q 000529 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICAD-TM 315 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d-t~ 315 (1441)
++|++||+||+.+++.+.+...+ +....++.+++.+||.+..+ ..
T Consensus 94 Ll~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~~~ 139 (226)
T COG1136 94 LLPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLKKK 139 (226)
T ss_pred CCCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhccCC
Confidence 99999999999998876653210 12234677899999997766 77
Q ss_pred cccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
+.+ |||||||||+|||||+.+|++++.||||.+||+.++..|++.++++.+. .++++++++|+ +++...|||+
T Consensus 140 p~e-----LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~-~g~tii~VTHd-~~lA~~~dr~ 212 (226)
T COG1136 140 PSE-----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE-RGKTIIMVTHD-PELAKYADRV 212 (226)
T ss_pred chh-----cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh-cCCEEEEEcCC-HHHHHhCCEE
Confidence 776 9999999999999999999999999999999999999999999998764 45666667776 5677799999
Q ss_pred EEecCCeE
Q 000529 396 ILLSDGQI 403 (1441)
Q Consensus 396 ilL~~G~i 403 (1441)
+.|.+|++
T Consensus 213 i~l~dG~~ 220 (226)
T COG1136 213 IELKDGKI 220 (226)
T ss_pred EEEeCCee
Confidence 99999994
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=345.38 Aligned_cols=217 Identities=25% Similarity=0.368 Sum_probs=182.9
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc------cceEEEEcCCCC
Q 000529 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDN 236 (1441)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 236 (1441)
..+++|+|||+.|++||+++|+|||||||||||++|.|+.+|+ +|+|.+||.++..... ++.+||++|+..
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence 4568999999999999999999999999999999999999998 9999999988766542 468999999999
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccc
Q 000529 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1441)
+.+.+||.+|+..+..-+. +.+.. -.+..+ ++.+..+-..|+.+|+.+.+.+..
T Consensus 92 Lv~r~sv~~NVl~grl~~~--s~~~s---------lfglfs---------------k~dk~~Al~aLervgi~~~A~qra 145 (258)
T COG3638 92 LVPRLSVLENVLLGRLGYT--STWRS---------LFGLFS---------------KEDKAQALDALERVGILDKAYQRA 145 (258)
T ss_pred cccccHHHHHHHhhhcccc--hHHHH---------HhCCCC---------------HHHHHHHHHHHHHcCcHHHHHHHh
Confidence 9999999999998753221 11111 111111 122334567899999999999988
Q ss_pred ccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEE
Q 000529 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1441)
Q Consensus 317 g~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vi 396 (1441)
++ |||||+|||+|||||+.+|++++.|||+++||+.++.++++.|++.....+ .++++.+|..+-+.++||||+
T Consensus 146 ~~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g-~Tvi~nLH~vdlA~~Y~~Rii 219 (258)
T COG3638 146 ST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDG-ITVIVNLHQVDLAKKYADRII 219 (258)
T ss_pred cc-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcC-CEEEEEechHHHHHHHHhhhe
Confidence 87 999999999999999999999999999999999999999999999887554 455556677899999999999
Q ss_pred EecCCeEEEEcCHHHHHH
Q 000529 397 LLSDGQIVYQGPRELVLE 414 (1441)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1441)
-|++|+|+|+||++++-+
T Consensus 220 gl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 220 GLKAGRIVFDGPASELTD 237 (258)
T ss_pred EecCCcEEEeCChhhhhH
Confidence 999999999999988654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=339.44 Aligned_cols=217 Identities=24% Similarity=0.317 Sum_probs=187.0
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCC---CCceEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~---~~~~~~G~i~i~g 919 (1441)
.++.+|++..+ +++++|+|||+.|++++++|++|||||||||||++|.... .+-.++|+|.++|
T Consensus 7 ~~~~~~l~~yY-------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYY-------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEE-------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 57788888766 3567999999999999999999999999999999999843 3446889999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-RQSLVGLPGV 993 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~ 993 (1441)
.++.. ..+|+.+|.|+|.+.-|| +|++||+.|+.++..-.+ ++.++.|++.|+...|++. .|++-.+ .
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s--a 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS--A 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--c
Confidence 98643 246889999999999999 999999999988765432 6677889999999999764 4444332 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCc
Q 000529 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1441)
Q Consensus 994 ~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG 1073 (1441)
.+|||||+|||||||||+.+|+||+||||||+|||.+...|-+++.+++ +.-|||++||.+. ......|+...+.. |
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G 224 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-G 224 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-c
Confidence 4699999999999999999999999999999999999999999999997 4699999999986 46778899999985 8
Q ss_pred EEEEEcCC
Q 000529 1074 REVYVGPL 1081 (1441)
Q Consensus 1074 ~~v~~G~~ 1081 (1441)
+++++|+.
T Consensus 225 ~LvE~g~T 232 (253)
T COG1117 225 ELVEFGPT 232 (253)
T ss_pred EEEEEcCH
Confidence 99999997
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=340.11 Aligned_cols=222 Identities=26% Similarity=0.412 Sum_probs=182.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcceEEEECCeeCCCCC-----ccceEEEEcCCCC
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTYNGHNMDEFV-----PERTAAYISQHDN 236 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~ 236 (1441)
++.+|+|||+.|+++++||++|||||||||||++|..+.+ |..+++|+|.++|+++-+.. .|+++|+|+|.+.
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 4569999999999999999999999999999999998855 45688999999999986532 2689999999999
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCC-ccccccc
Q 000529 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL-DICADTM 315 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~ 315 (1441)
-|| +|++||++|+.+..|... + +.+.+++..|+.-+| ++..|.+
T Consensus 99 PFp-~SIydNVayG~r~~g~~~--~--------------------------------~ldeiVe~sLk~AaLWdEVKDrL 143 (253)
T COG1117 99 PFP-MSIYDNVAYGLRLHGIKD--K--------------------------------ELDEIVESSLKKAALWDEVKDRL 143 (253)
T ss_pred CCC-chHHHHHHHhHHhhccch--H--------------------------------HHHHHHHHHHHHhHhHHHhHHHh
Confidence 999 999999999999887521 0 112334555555555 2333333
Q ss_pred cccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
= ....+|||||+||++|||+|+-+|+||+||||||+|||-++..|-+++.++. ..-+|++++|.+.++.+..|+.
T Consensus 144 ~--~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk---~~yTIviVTHnmqQAaRvSD~t 218 (253)
T COG1117 144 H--KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK---KKYTIVIVTHNMQQAARVSDYT 218 (253)
T ss_pred h--CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH---hccEEEEEeCCHHHHHHHhHhh
Confidence 2 2345699999999999999999999999999999999999999999999874 3566777899999999999999
Q ss_pred EEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHH
Q 000529 396 ILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 433 (1441)
..+..|++|+.|+.+++ |..|.++...||+
T Consensus 219 aFf~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 219 AFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 99999999999999987 3456666555554
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=372.90 Aligned_cols=216 Identities=27% Similarity=0.395 Sum_probs=192.1
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|++-++ ++..+|+|||++|++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p--~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP--SSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 57788877554 456899999999999999999999999999999999998764 479999999998
Q ss_pred Ccc-ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000529 923 KQE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1441)
Q Consensus 923 ~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1001 (1441)
... ..+|.+|+|+|+..+||++||+||+.|+.+++ .....++.+++++++++.++|.+..++++ .+||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHH
Confidence 653 35788999999999999999999999998743 23345667889999999999999998874 46999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcC
Q 000529 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1441)
Q Consensus 1002 qRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~ 1080 (1441)
|||+|||||+.+|++|+||||.|+||..-+..+..-++++.++ |.|.|++|||.. +.+.+.|||.+|++ |++.-.|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCC
Confidence 9999999999999999999999999999999999999999765 999999999976 78889999999985 89999998
Q ss_pred CC
Q 000529 1081 LG 1082 (1441)
Q Consensus 1081 ~~ 1082 (1441)
+.
T Consensus 221 P~ 222 (352)
T COG3842 221 PE 222 (352)
T ss_pred HH
Confidence 74
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=370.76 Aligned_cols=214 Identities=27% Similarity=0.417 Sum_probs=186.8
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|++..+. ++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEec
Confidence 578889887653 35699999999999999999999999999999999998763 479999999986
Q ss_pred Cc--cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000529 923 KQ--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1441)
Q Consensus 923 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1000 (1441)
.. ...++.+|||+|++.+++.+||+||+.|.+.++. .+..+.+++++++++.++|.+..++.++ +|||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHH
Confidence 43 2346779999999999999999999998765542 2334445568899999999988888754 699999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcC
Q 000529 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1441)
Q Consensus 1001 rqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~ 1080 (1441)
|||++||+||+++|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~ 221 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999986 67788999999985 89999998
Q ss_pred C
Q 000529 1081 L 1081 (1441)
Q Consensus 1081 ~ 1081 (1441)
.
T Consensus 222 ~ 222 (306)
T PRK13537 222 P 222 (306)
T ss_pred H
Confidence 6
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=370.15 Aligned_cols=206 Identities=24% Similarity=0.354 Sum_probs=180.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc------cceEEEEcCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDNHI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1441)
+++|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999998 9999999999876532 45799999999999
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
+.+||+||+.|+.+..+.. ..+...++.++++.+||.+..|..+++
T Consensus 95 ~~~tv~eni~~~~~~~~~~----------------------------------~~~~~~~v~e~l~~vgL~~~~~~~~~~ 140 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTP----------------------------------KDEIKRKVTELLALVGLGDKHDSYPSN 140 (343)
T ss_pred ccCcHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhhCChhh
Confidence 9999999999976543210 011223467789999999998888776
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
|||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.+. .+.+|+.++|+.+.+.++||+|++|
T Consensus 141 -----LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~-~g~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 141 -----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRR-LGLTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred -----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999997653 3566777899999999999999999
Q ss_pred cCCeEEEEcCHHHHH
Q 000529 399 SDGQIVYQGPRELVL 413 (1441)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1441)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=372.84 Aligned_cols=207 Identities=27% Similarity=0.408 Sum_probs=182.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1441)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ +|.++||+|+..+||.+||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 45899999999999999999999999999999999999998 9999999999876544 4789999999999999999
Q ss_pred HHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccC
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1441)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 323 (1441)
+||+.|+.+.++.. ..+....++++++.+||++..|+.+.+
T Consensus 94 ~eNi~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~l~L~~~~~~~~~~----- 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMG----------------------------------RAEVAERVAELLDLVGLPGSERKYPGQ----- 134 (353)
T ss_pred HHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCCchhhCChhh-----
Confidence 99999987543210 111234578899999999999988766
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000529 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1441)
Q Consensus 324 LSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~i 403 (1441)
|||||||||+|||||+.+|++|+||||+++||..++.++.+.|+++.+ ..+++++.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR-RLGVTTIMVTHDQEEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 3456777789999999999999999999999
Q ss_pred EEEcCHHHHHH
Q 000529 404 VYQGPRELVLE 414 (1441)
Q Consensus 404 v~~G~~~~~~~ 414 (1441)
++.|+++++.+
T Consensus 214 ~~~g~~~~~~~ 224 (353)
T TIGR03265 214 EQVGTPQEIYR 224 (353)
T ss_pred EEEcCHHHHHh
Confidence 99999998853
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=371.36 Aligned_cols=206 Identities=22% Similarity=0.368 Sum_probs=182.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1441)
..+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|+..+||++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 45899999999999999999999999999999999999998 9999999999876555 4789999999999999999
Q ss_pred HHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccC
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1441)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 323 (1441)
+||+.|+.+.++.. ..+...+++++++.+||.+..|+.+.+
T Consensus 96 ~eNi~~~l~~~~~~----------------------------------~~~~~~~v~~~l~~~gl~~~~~r~~~~----- 136 (351)
T PRK11432 96 GENVGYGLKMLGVP----------------------------------KEERKQRVKEALELVDLAGFEDRYVDQ----- 136 (351)
T ss_pred HHHHHHHHhHcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhcCChhh-----
Confidence 99999987644321 011234577899999999988888766
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000529 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1441)
Q Consensus 324 LSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~i 403 (1441)
|||||||||+|||||+.+|++|+||||++|||+.++.++.+.|+++.+ ..+++++.++|+..++.+++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tii~vTHd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ-QFNITSLYVTHDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 3456777799999999999999999999999
Q ss_pred EEEcCHHHHH
Q 000529 404 VYQGPRELVL 413 (1441)
Q Consensus 404 v~~G~~~~~~ 413 (1441)
+..|+++++.
T Consensus 216 ~~~g~~~~~~ 225 (351)
T PRK11432 216 MQIGSPQELY 225 (351)
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=371.90 Aligned_cols=207 Identities=23% Similarity=0.340 Sum_probs=182.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc--eEEEECCeeCCCCCc-cceEEEEcCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVS--GRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEM 241 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~--G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 241 (1441)
..+|+|+|+++++||+++|+|||||||||||++|+|+++|+ + |+|.++|+++....+ ++.++||+|+..+++.+
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 35899999999999999999999999999999999999998 8 999999999876544 46799999999999999
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1441)
||+||+.|+.+..+.. ..+...+++++++.+||++..|+.+++
T Consensus 95 tv~enl~~~l~~~~~~----------------------------------~~~~~~~v~~~l~~~gL~~~~~~~~~~--- 137 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMP----------------------------------KADIAERVADALKLVGLGDAAAHLPAQ--- 137 (362)
T ss_pred cHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHhcCCCchhhCChhh---
Confidence 9999999987643211 011223567889999999999988876
Q ss_pred cCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000529 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1441)
Q Consensus 322 rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G 401 (1441)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++....++++++.++|+..++..++|+|++|++|
T Consensus 138 --LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 138 --LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215 (362)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999998754322677788999999999999999999999
Q ss_pred eEEEEcCHHHHH
Q 000529 402 QIVYQGPRELVL 413 (1441)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1441)
+++..|+++++.
T Consensus 216 ~i~~~g~~~~~~ 227 (362)
T TIGR03258 216 RLAAHGEPQALY 227 (362)
T ss_pred EEEEEcCHHHHH
Confidence 999999999885
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=373.65 Aligned_cols=206 Identities=25% Similarity=0.358 Sum_probs=182.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1441)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|++.++|++||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999876544 4789999999999999999
Q ss_pred HHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccC
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1441)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 323 (1441)
+||+.|+.+..+.. ..+...+++++++.+||++..++.+++
T Consensus 94 ~eNi~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~~~----- 134 (356)
T PRK11650 94 RENMAYGLKIRGMP----------------------------------KAEIEERVAEAARILELEPLLDRKPRE----- 134 (356)
T ss_pred HHHHHhHHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhHhhCChhh-----
Confidence 99999987543210 111223567899999999999988876
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000529 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1441)
Q Consensus 324 LSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~i 403 (1441)
|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++.+ ..+++++.++|+..++.+++|+|++|++|++
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHR-RLKTTSLYVTHDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999998754 3366777899999999999999999999999
Q ss_pred EEEcCHHHHH
Q 000529 404 VYQGPRELVL 413 (1441)
Q Consensus 404 v~~G~~~~~~ 413 (1441)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (356)
T PRK11650 214 EQIGTPVEVY 223 (356)
T ss_pred EEECCHHHHH
Confidence 9999999874
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=368.82 Aligned_cols=217 Identities=22% Similarity=0.289 Sum_probs=186.0
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|+++.++.. .+.+.+|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 5788888776321 0124699999999999999999999999999999999998763 4799999998764
Q ss_pred cc------ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000529 924 QE------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1441)
Q Consensus 924 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 997 (1441)
.. ..++.+||++|+..+++..||+||+.|..... ..+.++.++++.++++.+||.+..|..+ ..||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 13567999999999999999999999876543 2344556677899999999998888764 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEE
Q 000529 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1441)
Q Consensus 998 gGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v 1076 (1441)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999875 999999999986 57788999999985 8999
Q ss_pred EEcCC
Q 000529 1077 YVGPL 1081 (1441)
Q Consensus 1077 ~~G~~ 1081 (1441)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T TIGR02314 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99986
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=370.94 Aligned_cols=218 Identities=28% Similarity=0.379 Sum_probs=187.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1441)
+++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|++.+||.+||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 35899999999999999999999999999999999999998 9999999999876544 4779999999999999999
Q ss_pred HHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccC
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1441)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 323 (1441)
+||+.|+.+.++.. ..+....++++++.+||++..|+.+.+
T Consensus 104 ~eNi~~~l~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~p~~----- 144 (375)
T PRK09452 104 FENVAFGLRMQKTP----------------------------------AAEITPRVMEALRMVQLEEFAQRKPHQ----- 144 (375)
T ss_pred HHHHHHHHhhcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhhCChhh-----
Confidence 99999986543210 011223467889999999999988866
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000529 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1441)
Q Consensus 324 LSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~i 403 (1441)
|||||||||+|||||+.+|++|+||||+++||..++..+.+.|+++.+. .+++++.++|+..++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~g~tiI~vTHd~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRK-LGITFVFVTHDQEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999987653 356777799999999999999999999999
Q ss_pred EEEcCHHHHHHHHHhcCCCCCCCCChhhHH
Q 000529 404 VYQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1441)
Q Consensus 404 v~~G~~~~~~~~f~~~G~~~p~~~~~adfl 433 (1441)
+..|+++++.+ .|....+|+|+
T Consensus 224 ~~~g~~~~i~~--------~p~~~~~a~~~ 245 (375)
T PRK09452 224 EQDGTPREIYE--------EPKNLFVARFI 245 (375)
T ss_pred EEEcCHHHHHh--------CcccHHHHHhc
Confidence 99999998742 35544455554
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=352.15 Aligned_cols=213 Identities=25% Similarity=0.359 Sum_probs=180.2
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccc
Confidence 5677776652 34699999999999999999999999999999999998653 47999999987543
Q ss_pred ------cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000529 925 ------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 925 ------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 998 (1441)
...++.++|++|++.+++.+||.||+.+...... ....++.++.++++++.++|.+..++.++ .|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPA-----ELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCH
Confidence 1245679999999999999999999988643221 12334445678899999999887776643 6999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
||||||+||+||+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~ 217 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVA 217 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999874 899999999986 57788999999985 89999
Q ss_pred EcCC
Q 000529 1078 VGPL 1081 (1441)
Q Consensus 1078 ~G~~ 1081 (1441)
.|+.
T Consensus 218 ~g~~ 221 (235)
T cd03261 218 EGTP 221 (235)
T ss_pred ecCH
Confidence 9875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=368.36 Aligned_cols=208 Identities=20% Similarity=0.307 Sum_probs=183.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-------cceEEEEcCCCC
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDN 236 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1441)
.+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 356999999999999999999999999999999999999998 9999999999876544 467999999999
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccc
Q 000529 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1441)
+++++||+||+.|+.+..+.. .++...++.++++.+||++..++.+
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~vgL~~~~~~~p 127 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWP----------------------------------EQERKEKALELLKLVGLEEYEHRYP 127 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHhcCCchhhhCCh
Confidence 999999999999987654321 0112235678899999998888888
Q ss_pred ccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEE
Q 000529 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1441)
Q Consensus 317 g~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vi 396 (1441)
++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.++++.+ ..+.+|+.++|+.+++..++|+|+
T Consensus 128 ~~-----LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~-~~~~Tii~vTHd~~ea~~~~drI~ 201 (363)
T TIGR01186 128 DE-----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA-TLQKTIVFITHDLDEAIRIGDRIV 201 (363)
T ss_pred hh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEE
Confidence 76 999999999999999999999999999999999999999999998754 335667779999999999999999
Q ss_pred EecCCeEEEEcCHHHHHH
Q 000529 397 LLSDGQIVYQGPRELVLE 414 (1441)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1441)
+|++|+++..|+++++..
T Consensus 202 vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 202 IMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEeCCEEEeeCCHHHHHh
Confidence 999999999999998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=370.09 Aligned_cols=215 Identities=26% Similarity=0.372 Sum_probs=186.8
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|++..++ +++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 69 (356)
T PRK11650 4 LKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVN 69 (356)
T ss_pred EEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 67888887652 13469999999999999999999999999999999999876 35899999998764
Q ss_pred cc-ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000529 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1441)
Q Consensus 924 ~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1002 (1441)
.. ..++.+|||+|++.++|++||+||+.|+...+ ..+..+.+++++++++.++|.+..++.+ ..|||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~Q 141 (356)
T PRK11650 70 ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQ 141 (356)
T ss_pred CCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHH
Confidence 32 23467999999999999999999999986543 2344555677899999999999888875 469999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1003 Rv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++|||+. ++.+++|++++|+ +|+++..|++
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~-~G~i~~~g~~ 219 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMN-GGVAEQIGTP 219 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEECCH
Confidence 999999999999999999999999999999999999999765 999999999986 6889999999997 5899999987
Q ss_pred C
Q 000529 1082 G 1082 (1441)
Q Consensus 1082 ~ 1082 (1441)
.
T Consensus 220 ~ 220 (356)
T PRK11650 220 V 220 (356)
T ss_pred H
Confidence 4
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=348.36 Aligned_cols=207 Identities=28% Similarity=0.406 Sum_probs=184.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCC----CCCccceEEEEcCCC-CCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMD----EFVPERTAAYISQHD-NHIG 239 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~----~~~~~~~~~yv~Q~d-~~~~ 239 (1441)
..+|+|+|+.+++|+.++|+||||||||||+++|+|++.|+ +|+|.++|.+.. ....++.+|||+|++ ..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 57999999999999999999999999999999999999998 899999999865 223367899999995 5678
Q ss_pred CCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccc
Q 000529 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1441)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1441)
.-||.|.++|+.+..+.. .++...+++.+++.+||.+.++..+.+
T Consensus 94 ~~tV~~evafg~~n~g~~----------------------------------~~e~~~rv~~~l~~vgl~~~~~r~p~~- 138 (235)
T COG1122 94 GPTVEDEVAFGLENLGLP----------------------------------REEIEERVAEALELVGLEELLDRPPFN- 138 (235)
T ss_pred cCcHHHHHhhchhhcCCC----------------------------------HHHHHHHHHHHHHHcCchhhccCCccc-
Confidence 889999999998877642 112346788999999999999988876
Q ss_pred cccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000529 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1441)
Q Consensus 320 ~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~ 399 (1441)
|||||||||+||.+|+.+|++|+|||||||||+..+.++++.++++.. .++.++|.++|+.+.+.+++|++++|+
T Consensus 139 ----LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~-~~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 139 ----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred ----cCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999864 456777789999999999999999999
Q ss_pred CCeEEEEcCHHHHHH
Q 000529 400 DGQIVYQGPRELVLE 414 (1441)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1441)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999887754
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=368.97 Aligned_cols=215 Identities=26% Similarity=0.363 Sum_probs=188.1
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|++.++. .+.+|+|||+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 477888887653 3569999999999999999999999999999999999876 3589999999876
Q ss_pred Cc-cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000529 923 KQ-ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1441)
Q Consensus 923 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1001 (1441)
.. ...+|.+|||+|+..++|.+||+||+.|+...+ ..+..+.+++++++++.++|.+..++.+ ..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHH
Confidence 43 223577999999999999999999999986543 2344556678999999999999888764 46999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcC
Q 000529 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1441)
Q Consensus 1002 qRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~ 1080 (1441)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++|||++ ++..++|++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999986 68889999999985 89999998
Q ss_pred CC
Q 000529 1081 LG 1082 (1441)
Q Consensus 1081 ~~ 1082 (1441)
+.
T Consensus 219 ~~ 220 (353)
T TIGR03265 219 PQ 220 (353)
T ss_pred HH
Confidence 73
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=319.11 Aligned_cols=201 Identities=25% Similarity=0.399 Sum_probs=176.6
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 000529 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1441)
Q Consensus 170 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1441)
..++.|++||+++|+||||||||||||.|+|+..|. +|+|.+||.+.+...| +|-++.++|+.++|..+||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 467889999999999999999999999999999998 9999999999887665 578999999999999999999999
Q ss_pred HHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCCChhh
Q 000529 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328 (1441)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGq 328 (1441)
++..- +-+ +. .+.+..++.++...||..+.++.++. |||||
T Consensus 94 LGl~P---~Lk------L~-------------------------a~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGq 134 (231)
T COG3840 94 LGLSP---GLK------LN-------------------------AEQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQ 134 (231)
T ss_pred ccCCc---ccc------cC-------------------------HHHHHHHHHHHHHhChhhHhhhCccc-----cCchH
Confidence 87531 111 11 11234578889999999999999987 99999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEEcC
Q 000529 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 408 (1441)
Q Consensus 329 rkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~iv~~G~ 408 (1441)
||||++||+|+++.+||+||||+|+||+.-+.+....+.+++.. .+.++++++|+.+++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E-~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE-RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh-hCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 99999999999999999999999999999999999999998765 45566667788899999999999999999999999
Q ss_pred HHHHH
Q 000529 409 RELVL 413 (1441)
Q Consensus 409 ~~~~~ 413 (1441)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 98765
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=320.26 Aligned_cols=203 Identities=26% Similarity=0.387 Sum_probs=181.8
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc------cceEEEEcCC
Q 000529 161 TKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQH 234 (1441)
Q Consensus 161 ~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~ 234 (1441)
+.....+|+|||+.|++||++-|+||||||||||||+|.+...|+ .|+|.+||+++..... +|+||+|+|+
T Consensus 11 Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD 87 (223)
T COG2884 11 YPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQD 87 (223)
T ss_pred cCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeee
Confidence 334466999999999999999999999999999999999999998 9999999999876532 5789999999
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccc
Q 000529 235 DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADT 314 (1441)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1441)
..+++..||.||++|+.+..|.. ..+.+.++.++|+..||.+.++.
T Consensus 88 ~rLL~~~tvyeNVA~pL~v~G~~----------------------------------~~~i~~rV~~~L~~VgL~~k~~~ 133 (223)
T COG2884 88 FRLLPDRTVYENVALPLRVIGKP----------------------------------PREIRRRVSEVLDLVGLKHKARA 133 (223)
T ss_pred ccccccchHhhhhhhhhhccCCC----------------------------------HHHHHHHHHHHHHHhccchhhhc
Confidence 99999999999999998877642 22345678889999999999998
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
.+-. |||||+|||+||||++.+|++|+.||||-.||+..+.+|++.+.++- ..+|+|++.+|+..-+-.+-.+
T Consensus 134 lP~~-----LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~~r 206 (223)
T COG2884 134 LPSQ-----LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMRHR 206 (223)
T ss_pred Cccc-----cCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhccCc
Confidence 8765 99999999999999999999999999999999999999999999874 3578888899999999999999
Q ss_pred EEEecCCeEEEEc
Q 000529 395 IILLSDGQIVYQG 407 (1441)
Q Consensus 395 vilL~~G~iv~~G 407 (1441)
++.|++|+++...
T Consensus 207 vl~l~~Grl~~d~ 219 (223)
T COG2884 207 VLALEDGRLVRDE 219 (223)
T ss_pred EEEEeCCEEEecc
Confidence 9999999998754
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=367.32 Aligned_cols=215 Identities=24% Similarity=0.379 Sum_probs=188.3
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|++..+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 478888887652 34699999999999999999999999999999999998763 489999999876
Q ss_pred Ccc-ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000529 923 KQE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1441)
Q Consensus 923 ~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1001 (1441)
... ..+|.+|||+|+..++|++||+||+.|+...+. .+.++.+++++++++.++|.+..++.. ..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 542 234779999999999999999999999875442 344566778999999999998888764 46999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcC
Q 000529 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1441)
Q Consensus 1002 qRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~ 1080 (1441)
|||+|||||+.+|++|+|||||||||+.++..+.+.|+++.++ |+|+|++|||++ ++.+++|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999986 68889999999985 89999998
Q ss_pred CC
Q 000529 1081 LG 1082 (1441)
Q Consensus 1081 ~~ 1082 (1441)
+.
T Consensus 221 ~~ 222 (351)
T PRK11432 221 PQ 222 (351)
T ss_pred HH
Confidence 73
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=364.43 Aligned_cols=215 Identities=26% Similarity=0.375 Sum_probs=186.7
Q ss_pred ceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCcc
Q 000529 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1441)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 921 (1441)
..+.++|++..++ ++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 40 ~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEE
Confidence 3588899987763 35699999999999999999999999999999999998763 47999999988
Q ss_pred CCc--cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000529 922 KKQ--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1441)
Q Consensus 922 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 999 (1441)
... ...++.+||++|+..+++.+||+|++.+.+.++. .+..+..+.++++++.++|.+..++.++ .||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVS-----DLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHH
Confidence 643 2345679999999999999999999987665432 2233344567889999999988888764 59999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1000 qrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
||||++||+||+++|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g 254 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 999999999999999999999999999999999999999999878999999999986 67789999999985 8999999
Q ss_pred CC
Q 000529 1080 PL 1081 (1441)
Q Consensus 1080 ~~ 1081 (1441)
+.
T Consensus 255 ~~ 256 (340)
T PRK13536 255 RP 256 (340)
T ss_pred CH
Confidence 86
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=317.71 Aligned_cols=196 Identities=27% Similarity=0.351 Sum_probs=172.5
Q ss_pred ceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcc-ccceEEEEeccCCCCCCCCCHHHHHHH
Q 000529 874 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLFY 952 (1441)
Q Consensus 874 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f 952 (1441)
..+.+|++||++||+||||||||||||+|+|...+ .+|+|.|||.+.... ...|-++.++|+..+|.++||.+|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 56788999999999999999999999999998774 489999999987653 345668999999999999999999977
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHH
Q 000529 953 SAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032 (1441)
Q Consensus 953 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~ 1032 (1441)
+.. |.-.-.++.+++++.++..+||..+.+++.+ +|||||||||++||+|+++-+||+||||+|.|||.-+.
T Consensus 95 Gl~---P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLS---PGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCC---cccccCHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 642 2111224456679999999999999998855 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-cCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1033 IVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1033 ~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
++..++.++++ ++.|++++||+|+ +.....|+++++++ ||+.+.|+.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 99999999975 4899999999997 78899999999986 899999986
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=359.93 Aligned_cols=206 Identities=27% Similarity=0.396 Sum_probs=180.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC--ccceEEEEcCCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1441)
+.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 46999999999999999999999999999999999999998 999999999976432 2467999999999999999
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1441)
|+||+.|.++..+... .+...+++.+++.+||.+.+++.+++
T Consensus 97 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~---- 138 (306)
T PRK13537 97 VRENLLVFGRYFGLSA----------------------------------AAARALVPPLLEFAKLENKADAKVGE---- 138 (306)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCchhh----
Confidence 9999998665543210 01123457789999999999998876
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 GLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~ 402 (1441)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. .+++|+.++|..+++.++||+|++|++|+
T Consensus 139 -LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~till~sH~l~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 139 -LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVIEEGR 215 (306)
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999998743 36677778999999999999999999999
Q ss_pred EEEEcCHHHHHH
Q 000529 403 IVYQGPRELVLE 414 (1441)
Q Consensus 403 iv~~G~~~~~~~ 414 (1441)
+++.|+++++.+
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999998764
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=367.09 Aligned_cols=215 Identities=25% Similarity=0.331 Sum_probs=187.5
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEE--EEEEEcCc
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GDIRISGY 920 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~--G~i~i~g~ 920 (1441)
.++++|+++++. ++.+|+|+|++|++||+++|+|||||||||||++|+|..++ .+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCE
Confidence 477888887763 34699999999999999999999999999999999998764 46 99999998
Q ss_pred cCCcc-ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000529 921 PKKQE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1441)
Q Consensus 921 ~~~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 999 (1441)
+.... ..++.+|||+|+..++|.+||+||+.|+...+ ..+..+.+++++++++.++|.+..++.+ ..||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 76432 23567999999999999999999999986543 2344556677999999999999888875 469999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 1000 qrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++|||++ ++..++|++++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999876 799999999986 67889999999985 89999
Q ss_pred EcCCC
Q 000529 1078 VGPLG 1082 (1441)
Q Consensus 1078 ~G~~~ 1082 (1441)
.|++.
T Consensus 220 ~g~~~ 224 (362)
T TIGR03258 220 HGEPQ 224 (362)
T ss_pred EcCHH
Confidence 99863
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=344.68 Aligned_cols=214 Identities=23% Similarity=0.334 Sum_probs=187.5
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|++|+++. +..+|+|+|++|++||.++|+|+||||||||+++|+|...+ .+|.|.++|.+..
T Consensus 4 i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeecc
Confidence 578888888642 25799999999999999999999999999999999998764 4699999998855
Q ss_pred ----ccccceEEEEeccCCCCC-CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000529 924 ----QETFARISGYCEQNDIHS-PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 924 ----~~~~~~~~gyv~Q~~~~~-~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 998 (1441)
...+++.+|||+|++... ..-||.|.+.|+..-. ..+.++.+++++++++.+|+.+.+++. +..|||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSG 141 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLSG 141 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCC
Confidence 345678899999998654 4579999999986533 345667888999999999999998876 356999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
||||||+||.+|+.+|++|+|||||||||+.++..+++.++++.++ |+|||++|||.. .+.+.+|++++|++ |++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~ 219 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILA 219 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEee
Confidence 9999999999999999999999999999999999999999999877 799999999987 58888999999985 89999
Q ss_pred EcCC
Q 000529 1078 VGPL 1081 (1441)
Q Consensus 1078 ~G~~ 1081 (1441)
.|++
T Consensus 220 ~g~p 223 (235)
T COG1122 220 DGDP 223 (235)
T ss_pred cCCH
Confidence 9985
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=364.50 Aligned_cols=210 Identities=25% Similarity=0.379 Sum_probs=181.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1441)
+++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|++.+++.+||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 35999999999999999999999999999999999999998 9999999999865443 3679999999999999999
Q ss_pred HHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccC
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1441)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 323 (1441)
+||+.|+.+....... . ...+...+++++++.+||++..|+.+.+
T Consensus 92 ~eni~~~~~~~~~~~~------~------------------------~~~~~~~~~~~~l~~~~L~~~~~~~~~~----- 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRER------P------------------------NAAAIKAKVTQLLEMVQLAHLADRYPAQ----- 136 (353)
T ss_pred HHHHHhhhhhcccccC------C------------------------CHHHHHHHHHHHHHHcCCchhhhCChhh-----
Confidence 9999998653210000 0 0111233567889999999888888766
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000529 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1441)
Q Consensus 324 LSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~i 403 (1441)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ..+.+++.++|+..++.+++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE-ELKFTSVFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 4456777899999999999999999999999
Q ss_pred EEEcCHHHHH
Q 000529 404 VYQGPRELVL 413 (1441)
Q Consensus 404 v~~G~~~~~~ 413 (1441)
++.|+++++.
T Consensus 216 ~~~g~~~~i~ 225 (353)
T PRK10851 216 EQAGTPDQVW 225 (353)
T ss_pred EEEcCHHHHH
Confidence 9999999884
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=343.16 Aligned_cols=210 Identities=29% Similarity=0.408 Sum_probs=176.3
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 4667776552 2469999999999999999999999999999999999865 347999999987643
Q ss_pred c-ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000529 925 E-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003 (1441)
Q Consensus 925 ~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1003 (1441)
. ..++.++|++|++.+++.+|++|++.+..... ....+..++.++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 2 23457999999998888999999998765432 1223344556889999999988777764 3599999999
Q ss_pred HHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1004 v~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999764 899999999986 57788999999985 7887765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=332.19 Aligned_cols=217 Identities=27% Similarity=0.344 Sum_probs=178.9
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++.+|++..++... ....+|+||||+|.+||++||+|+||||||||.++|+|..++ ..|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCccc
Confidence 367788876664321 112599999999999999999999999999999999998764 589999999876
Q ss_pred Ccc----ccceEEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCc
Q 000529 923 KQE----TFARISGYCEQNDI--HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-RQSLVGLPGVNG 995 (1441)
Q Consensus 923 ~~~----~~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~ 995 (1441)
... .+.+.+.+|+||+. +.|..||++.|.=.... ...++. ++++.++++.+||.+. .++. +.+
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHHhcC-----chh
Confidence 442 36778999999986 56889999988544322 122222 3348999999999763 4443 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 996 LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
||||||||++|||||+.+|++|+||||||+||+..+..|+++|.++.++ |.|.|+++||.+. +..+|||+++|++ |+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~-G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDN-GQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeC-Ce
Confidence 9999999999999999999999999999999999999999999999865 8899999999874 7788999999986 89
Q ss_pred EEEEcCCC
Q 000529 1075 EVYVGPLG 1082 (1441)
Q Consensus 1075 ~v~~G~~~ 1082 (1441)
+++.++.+
T Consensus 220 ivE~~~~~ 227 (252)
T COG1124 220 IVEIGPTE 227 (252)
T ss_pred EEEeechh
Confidence 99999974
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=334.75 Aligned_cols=221 Identities=28% Similarity=0.386 Sum_probs=191.1
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCcc----ceEEEEcCCCCCC
Q 000529 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHI 238 (1441)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1441)
....+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...+. .-++--+|...+|
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 4578999999999999999999999999999999999999998 99999999999887764 3578899999999
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
++|||.||+..++..+.. +.......+ ...+..+...++..+|+.+||.+.+|+..|+
T Consensus 92 ~~lTVlENv~va~~~~~~---~~~~l~~~~-------------------~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~ 149 (250)
T COG0411 92 PGLTVLENVAVGAHARLG---LSGLLGRPR-------------------ARKEEREARERARELLEFVGLGELADRPAGN 149 (250)
T ss_pred CCCcHHHHHHHHhhhhhh---hhhhhcccc-------------------chhhHHHHHHHHHHHHHHcCCchhhcchhhc
Confidence 999999999998765421 000000000 0012234456678899999999999999998
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.++++.+ .++.+|+.|-|+++-++++||||+||
T Consensus 150 -----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 150 -----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred -----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEEec
Confidence 999999999999999999999999999999999999999999999754 46688888999999999999999999
Q ss_pred cCCeEEEEcCHHHHHH
Q 000529 399 SDGQIVYQGPRELVLE 414 (1441)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1441)
+.|+++.+|+++++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999863
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=361.66 Aligned_cols=202 Identities=28% Similarity=0.398 Sum_probs=177.0
Q ss_pred ceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc--cccceEEEEeccCCCCCCCCC
Q 000529 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ--ETFARISGYCEQNDIHSPFVT 945 (1441)
Q Consensus 868 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 945 (1441)
++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 45799999999999999999999999999999999998763 47999999987643 234567999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCC
Q 000529 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025 (1441)
Q Consensus 946 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsg 1025 (1441)
|+|++.+.+.++. ......++.++++++.++|.+..++.++ .|||||||||+||+||+.+|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765542 2333445568899999999988887754 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1026 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1026 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999877999999999986 57788999999985 899999986
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=330.35 Aligned_cols=205 Identities=26% Similarity=0.335 Sum_probs=177.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC----ccceEEEEcCCC--CCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV----PERTAAYISQHD--NHI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d--~~~ 238 (1441)
.++|+|||+++.+||..+|+|+||||||||.++|+|+.+|+ +|+|.++|.+..... ..+.+-+|+||+ .+-
T Consensus 20 ~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLn 96 (252)
T COG1124 20 FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLN 96 (252)
T ss_pred hhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccC
Confidence 37999999999999999999999999999999999999998 999999998876543 246799999996 577
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc-ccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI-CADTMVG 317 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg 317 (1441)
|..||++.|.-+.+..+.+. ...++.++|+.+||+. .++..+-
T Consensus 97 P~~tv~~~l~Epl~~~~~~~------------------------------------~~~~i~~~L~~VgL~~~~l~R~P~ 140 (252)
T COG1124 97 PRRTVGRILSEPLRPHGLSK------------------------------------SQQRIAELLDQVGLPPSFLDRRPH 140 (252)
T ss_pred cchhHHHHHhhhhccCCccH------------------------------------HHHHHHHHHHHcCCCHHHHhcCch
Confidence 89999999987765433210 1122677899999974 4555554
Q ss_pred cccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000529 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1441)
Q Consensus 318 ~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vil 397 (1441)
+ |||||||||+|||||+.+|++|++|||||+||++...+|++.|.++.+ ..+.+++.++|+..-+..+||||++
T Consensus 141 e-----LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~-~~~lt~l~IsHdl~~v~~~cdRi~V 214 (252)
T COG1124 141 E-----LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKK-ERGLTYLFISHDLALVEHMCDRIAV 214 (252)
T ss_pred h-----cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHH-hcCceEEEEeCcHHHHHHHhhheee
Confidence 4 999999999999999999999999999999999999999999998765 5677888899999999999999999
Q ss_pred ecCCeEEEEcCHHHHHH
Q 000529 398 LSDGQIVYQGPRELVLE 414 (1441)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (1441)
|++|++++.++.+++..
T Consensus 215 m~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 215 MDNGQIVEIGPTEELLS 231 (252)
T ss_pred eeCCeEEEeechhhhhc
Confidence 99999999999999864
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=363.75 Aligned_cols=217 Identities=26% Similarity=0.384 Sum_probs=185.9
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 67788876652 34699999999999999999999999999999999998663 4799999998764
Q ss_pred cc-ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000529 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1441)
Q Consensus 924 ~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1001 (1441)
.. ..++.+|||+|++.++|.+||+||+.|....+.. ...+.++.+++++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 32 2346799999999999999999999987653211 12344555678899999999998888764 46999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcC
Q 000529 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1441)
Q Consensus 1002 qRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~ 1080 (1441)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|++ |++++.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999866 899999999986 68889999999985 89999998
Q ss_pred CC
Q 000529 1081 LG 1082 (1441)
Q Consensus 1081 ~~ 1082 (1441)
+.
T Consensus 221 ~~ 222 (353)
T PRK10851 221 PD 222 (353)
T ss_pred HH
Confidence 63
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=342.93 Aligned_cols=208 Identities=24% Similarity=0.327 Sum_probs=174.9
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehh
Confidence 567888877631 124699999999999999999999999999999999998653 4799999998753
Q ss_pred cc------ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000529 924 QE------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1441)
Q Consensus 924 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 997 (1441)
.. ..++.++|++|++.+++.+||.||+.+....+. ...+..++.++++++.++|.+..++.+ ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 135679999999998899999999988754331 223344566889999999988777764 3699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 998 gGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|++ |+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999999999999999999999999999877999999999986 46678999999985 54
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=341.24 Aligned_cols=200 Identities=28% Similarity=0.404 Sum_probs=172.6
Q ss_pred eeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCccccceEEEEeccCCCCCCCCCHHH
Q 000529 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948 (1441)
Q Consensus 869 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 948 (1441)
+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... .++.++|++|++.+++.+|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcc--ccCcEEEEecccccccCCCHHH
Confidence 5799999999999999999999999999999999998653 47999999987642 3567999999998888899999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCH
Q 000529 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028 (1441)
Q Consensus 949 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~ 1028 (1441)
|+.+....+. ...+...+.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+|||+
T Consensus 93 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 9988754331 223344566889999999988777664 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHhhCeEEEEec-CcEEEEEcCC
Q 000529 1029 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGREVYVGPL 1081 (1441)
Q Consensus 1029 ~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~vllL~~-gG~~v~~G~~ 1081 (1441)
.++..+++.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ .|+++..++.
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999865 4899999999986 57788999999985 4899988775
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=363.85 Aligned_cols=214 Identities=23% Similarity=0.331 Sum_probs=186.9
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++++. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478899887763 34699999999999999999999999999999999998763 479999999876
Q ss_pred Ccc-ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000529 923 KQE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1441)
Q Consensus 923 ~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1001 (1441)
... ..+|.+|||+|++.++|.+||+||+.|+...+ ..+..+.+++++++++.++|.+..++.+ ..||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 432 23567999999999999999999999986543 2334455667899999999999888874 46999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcC
Q 000529 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1441)
Q Consensus 1002 qRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~ 1080 (1441)
|||+|||||+.+|++|+|||||||||+.++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999865 999999999986 68889999999985 89999998
Q ss_pred C
Q 000529 1081 L 1081 (1441)
Q Consensus 1081 ~ 1081 (1441)
+
T Consensus 229 ~ 229 (375)
T PRK09452 229 P 229 (375)
T ss_pred H
Confidence 6
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=365.39 Aligned_cols=206 Identities=23% Similarity=0.324 Sum_probs=181.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1441)
..+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..+|+.+||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 35899999999999999999999999999999999999998 9999999999876544 4789999999999999999
Q ss_pred HHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccC
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1441)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 323 (1441)
.||+.|+.+..+.. ..+...+++++++.+||.+..++.+.+
T Consensus 109 ~eNi~~~l~~~~~~----------------------------------~~~~~~~v~~~l~~l~L~~~~~~~~~~----- 149 (377)
T PRK11607 109 EQNIAFGLKQDKLP----------------------------------KAEIASRVNEMLGLVHMQEFAKRKPHQ----- 149 (377)
T ss_pred HHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhcCChhh-----
Confidence 99999986543210 011234567889999999888888765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000529 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1441)
Q Consensus 324 LSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~i 403 (1441)
|||||||||+|||||+.+|++|+||||+++||..++..+.+.|+++.+.. +.+++.++|+..++..++|+|++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV-GVTCVMVTHDQEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999998876533 56777789999999999999999999999
Q ss_pred EEEcCHHHHH
Q 000529 404 VYQGPRELVL 413 (1441)
Q Consensus 404 v~~G~~~~~~ 413 (1441)
+..|+++++.
T Consensus 229 ~~~g~~~~~~ 238 (377)
T PRK11607 229 VQIGEPEEIY 238 (377)
T ss_pred EEEcCHHHHH
Confidence 9999999875
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=327.06 Aligned_cols=207 Identities=25% Similarity=0.388 Sum_probs=177.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCcc----ceEEEEcCCCCCCC
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHIG 239 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1441)
+.++|++||+.+++||+++|+||||+||||||++|+|..++. +|+|.++|++++...+. +-++||||....|+
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 368999999999999999999999999999999999999987 99999999999887663 56999999999999
Q ss_pred CCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHc-CCcccccccccc
Q 000529 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVL-GLDICADTMVGD 318 (1441)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~ 318 (1441)
+|||+|||..++..... .+ . .....+.+.+.| .|.+..+..-|+
T Consensus 92 ~LTVeENL~~g~~~~~~-~~----------~------------------------~~~~~e~v~~lFP~Lker~~~~aG~ 136 (237)
T COG0410 92 RLTVEENLLLGAYARRD-KE----------A------------------------QERDLEEVYELFPRLKERRNQRAGT 136 (237)
T ss_pred hCcHHHHHhhhhhcccc-cc----------c------------------------ccccHHHHHHHChhHHHHhcCcccC
Confidence 99999999987653310 00 0 000133444554 255666777776
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
|||||+|.++|||||+++|++|+|||||.||-|.-..+|.+.++++.+ .++.+|+.+.|....+.+++||.++|
T Consensus 137 -----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~-~~g~tIlLVEQn~~~Al~iaDr~yvl 210 (237)
T COG0410 137 -----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRK-EGGMTILLVEQNARFALEIADRGYVL 210 (237)
T ss_pred -----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHH-cCCcEEEEEeccHHHHHHhhCEEEEE
Confidence 999999999999999999999999999999999999999999999864 44578888999999999999999999
Q ss_pred cCCeEEEEcCHHHHHH
Q 000529 399 SDGQIVYQGPRELVLE 414 (1441)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1441)
.+|++++.|+.+++.+
T Consensus 211 e~Griv~~G~~~eL~~ 226 (237)
T COG0410 211 ENGRIVLSGTAAELLA 226 (237)
T ss_pred eCCEEEEecCHHHHhc
Confidence 9999999999998863
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=341.31 Aligned_cols=212 Identities=28% Similarity=0.381 Sum_probs=179.6
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
.++|+++++. ++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~ 66 (220)
T cd03265 2 EVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecCc
Confidence 5677776652 34699999999999999999999999999999999998653 47999999986532
Q ss_pred --cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000529 925 --ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1441)
Q Consensus 925 --~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1002 (1441)
...++.++|++|++.+++.+||+|++.+....+. ...++.++.++++++.++|.+..++.++ .|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 138 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLVK-----TYSGGMRR 138 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHH
Confidence 2234579999999998899999999988754431 2233345568899999999887777654 69999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1003 Rv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
|++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTP 216 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCCh
Confidence 999999999999999999999999999999999999999876 899999999986 57778999999985 899988875
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=339.15 Aligned_cols=209 Identities=26% Similarity=0.423 Sum_probs=176.9
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 4677776552 3469999999999999999999999999999999999865 358999999987643
Q ss_pred cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHH
Q 000529 925 ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRL 1004 (1441)
Q Consensus 925 ~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv 1004 (1441)
..++.++|++|++.+++.+|++||+.+....+. ......++.++++++.+++.+..++.+ ..||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHH
Confidence 345679999999998889999999988655432 223344566889999999988777654 46999999999
Q ss_pred HHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1005 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1005 ~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
+||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999877899999999986 46778999999985 7887654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=339.46 Aligned_cols=210 Identities=26% Similarity=0.387 Sum_probs=177.1
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
.++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 5677776653 2469999999999999999999999999999999999865 347999999987643
Q ss_pred c-ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000529 925 E-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003 (1441)
Q Consensus 925 ~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1003 (1441)
. ..++.++|++|++.+++..|++||+.+....+ ....++.++.++++++.+++.+..+..++ .||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPK-----QLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHH
Confidence 2 22457999999998888899999998865432 12334445568889999999887777653 699999999
Q ss_pred HHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1004 v~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. ++.+.+|++++|++ |++++.|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999864 899999999986 57778999999985 7888875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=322.48 Aligned_cols=207 Identities=26% Similarity=0.354 Sum_probs=183.2
Q ss_pred CCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcccc----ceEEEEeccCCCCC
Q 000529 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETF----ARISGYCEQNDIHS 941 (1441)
Q Consensus 866 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~----~~~~gyv~Q~~~~~ 941 (1441)
++++++++|||+.|++||++||+|||||||||.+.++.|...+ .+|.|.+||.+++.... +.-+||+||++..|
T Consensus 14 y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~--d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 14 YKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred hCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec--CCceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 4567899999999999999999999999999999999998764 47999999998865332 23489999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeC
Q 000529 942 PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021 (1441)
Q Consensus 942 ~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDE 1021 (1441)
-.+||+||+......+.. +....+++++++++|+.+++.|+++++.. .||||||+|+.|||||+.+|+.++|||
T Consensus 92 r~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGERRR~EIARaLa~~P~fiLLDE 165 (243)
T COG1137 92 RKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAY-----SLSGGERRRVEIARALAANPKFILLDE 165 (243)
T ss_pred hcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCccc-----ccccchHHHHHHHHHHhcCCCEEEecC
Confidence 999999999877666532 22334566678899999999999998743 599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCC
Q 000529 1022 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1022 PTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1082 (1441)
|++|+||-+...|.+.++.++++|..|++|-|... +....|||..++.+ |++..+|.+.
T Consensus 166 PFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ 224 (243)
T COG1137 166 PFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPE 224 (243)
T ss_pred CccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHH
Confidence 99999999999999999999999999999999987 78899999999985 8999999974
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=356.63 Aligned_cols=214 Identities=27% Similarity=0.370 Sum_probs=182.9
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.+. ++.+|+||||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 477888887653 34699999999999999999999999999999999998653 479999999876
Q ss_pred Cc--cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000529 923 KQ--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1441)
Q Consensus 923 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1000 (1441)
.. ...++.+||++|++.+++.+||+|++.+.+.... .+.+..++.++++++.++|.+..++.++ .|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRVA-----LLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHH
Confidence 32 2245679999999998899999999987554321 2333444567889999999888777754 599999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcC
Q 000529 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1441)
Q Consensus 1001 rqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~ 1080 (1441)
|||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 57788999999985 89999998
Q ss_pred C
Q 000529 1081 L 1081 (1441)
Q Consensus 1081 ~ 1081 (1441)
.
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 6
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=344.61 Aligned_cols=207 Identities=30% Similarity=0.396 Sum_probs=176.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc------cceEEEEcCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDNHI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1441)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 46999999999999999999999999999999999999998 9999999998765422 35799999999889
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
+.+||+||+.++.+.... . . .++....++.+++.+||++..++.+++
T Consensus 90 ~~~tv~~~l~~~~~~~~~-~--------~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (235)
T cd03261 90 DSLTVFENVAFPLREHTR-L--------S------------------------EEEIREIVLEKLEAVGLRGAEDLYPAE 136 (235)
T ss_pred CCCcHHHHHHHHHhhccC-C--------C------------------------HHHHHHHHHHHHHHcCCchhhcCChhh
Confidence 999999999986432110 0 0 001123456789999998888888776
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. ..+++|+.++|+.+++.+++|+|++|
T Consensus 137 -----LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tvi~vsH~~~~~~~~~d~v~~l 210 (235)
T cd03261 137 -----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKK-ELGLTSIMVTHDLDTAFAIADRIAVL 210 (235)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEecCHHHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999998754 23566777889999999999999999
Q ss_pred cCCeEEEEcCHHHHH
Q 000529 399 SDGQIVYQGPRELVL 413 (1441)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1441)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (235)
T cd03261 211 YDGKIVAEGTPEELR 225 (235)
T ss_pred ECCeEEEecCHHHHc
Confidence 999999999988753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=359.54 Aligned_cols=206 Identities=26% Similarity=0.384 Sum_probs=179.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc------cceEEEEcCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDNHI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1441)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 56999999999999999999999999999999999999998 9999999999865432 35799999999899
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
+.+||+||+.++....+.. . .+....++.+++.+||++..++.+++
T Consensus 95 ~~~tv~eni~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~~~ 140 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTP----------K------------------------AEIKARVTELLELVGLSDKADRYPAQ 140 (343)
T ss_pred CCCcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhCChhh
Confidence 9999999999976543210 0 01123467789999999888888766
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ ..+++|+.++|+.+++.++||+|++|
T Consensus 141 -----LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~-~~g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 141 -----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR-ELGLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998754 33567777899999999999999999
Q ss_pred cCCeEEEEcCHHHHH
Q 000529 399 SDGQIVYQGPRELVL 413 (1441)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1441)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=360.92 Aligned_cols=204 Identities=25% Similarity=0.296 Sum_probs=179.0
Q ss_pred CceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcc---cc----ceEEEEeccCCC
Q 000529 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE---TF----ARISGYCEQNDI 939 (1441)
Q Consensus 867 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~----~~~~gyv~Q~~~ 939 (1441)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.++... .. ++.+|||+|+..
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 456799999999999999999999999999999999998763 589999999886532 22 568999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEE
Q 000529 940 HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1019 (1441)
Q Consensus 940 ~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlL 1019 (1441)
++|.+||+||+.|..... ..+.++..+++.++++.+||.+..++.++ .|||||||||+|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999876543 23455566788999999999888887754 6999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCC
Q 000529 1020 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1020 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1082 (1441)
||||++||+.++..+++.++++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|++.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~~ 215 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTPD 215 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCHH
Confidence 9999999999999999999999754 899999999986 57889999999974 8999999863
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=357.12 Aligned_cols=206 Identities=27% Similarity=0.381 Sum_probs=179.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC--ccceEEEEcCCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1441)
+++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999998 999999999875422 1357999999999999999
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1441)
|+||+.+.++..+... .+....++++++.+||++..++.+++
T Consensus 83 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~---- 124 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK----------------------------------DEAEERAEELLELFELGEAADRPVGT---- 124 (302)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhCCchhh----
Confidence 9999998765443100 01123467789999999988988876
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 GLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~ 402 (1441)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++|+.+++.++||+|++|++|+
T Consensus 125 -LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 125 -YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-E-GVTILLTTHYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999998753 3 5677778999999999999999999999
Q ss_pred EEEEcCHHHHHH
Q 000529 403 IVYQGPRELVLE 414 (1441)
Q Consensus 403 iv~~G~~~~~~~ 414 (1441)
+++.|+++++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999988754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=343.42 Aligned_cols=215 Identities=27% Similarity=0.348 Sum_probs=179.0
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
+++|+++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 4667776552 3469999999999999999999999999999999999865 347999999987643
Q ss_pred cc----cceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCC-------CCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000529 925 ET----FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPE-------VNSETRKMFIEEVMELVELKPLRQSLVGLPGV 993 (1441)
Q Consensus 925 ~~----~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~-------~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 993 (1441)
.. .++.++|++|++.+++.+||+|++.+......... .......+.++++++.+|+.+..++.+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 21 23458999999999999999999988754321110 012334556889999999988777664
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCc
Q 000529 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1441)
Q Consensus 994 ~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG 1073 (1441)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|++ |
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-G 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-C
Confidence 469999999999999999999999999999999999999999999999877999999999986 57788999999985 8
Q ss_pred EEEEEcCC
Q 000529 1074 REVYVGPL 1081 (1441)
Q Consensus 1074 ~~v~~G~~ 1081 (1441)
++++.|+.
T Consensus 220 ~i~~~~~~ 227 (236)
T cd03219 220 RVIAEGTP 227 (236)
T ss_pred EEEeecCH
Confidence 99998875
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=360.27 Aligned_cols=217 Identities=24% Similarity=0.291 Sum_probs=183.9
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|++++++.. .+++.+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 5678888776411 1135799999999999999999999999999999999998763 4799999998764
Q ss_pred cc------ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000529 924 QE------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1441)
Q Consensus 924 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 997 (1441)
.. ..++.+||++|++.+++.+||+||+.+....+. .+.++.+++++++++.+||.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 135679999999999999999999998765431 233445567889999999988877764 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEE
Q 000529 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1441)
Q Consensus 998 gGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v 1076 (1441)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 57788999999985 8999
Q ss_pred EEcCC
Q 000529 1077 YVGPL 1081 (1441)
Q Consensus 1077 ~~G~~ 1081 (1441)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T PRK11153 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99986
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=363.94 Aligned_cols=206 Identities=26% Similarity=0.383 Sum_probs=180.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1441)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 45899999999999999999999999999999999999998 9999999999865443 4679999999999999999
Q ss_pred HHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccC
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1441)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 323 (1441)
+||+.|+.+..+.. ..+....++++++.+||++..++.+++
T Consensus 93 ~eni~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~lgL~~~~~~~~~~----- 133 (369)
T PRK11000 93 AENMSFGLKLAGAK----------------------------------KEEINQRVNQVAEVLQLAHLLDRKPKA----- 133 (369)
T ss_pred HHHHHhHHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhcCChhh-----
Confidence 99999986543210 001123467789999999888888876
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000529 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1441)
Q Consensus 324 LSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~i 403 (1441)
|||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++.+ ..+++++.++|+.+++.+++|+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~-~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK-RLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-HhCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 3356677789999999999999999999999
Q ss_pred EEEcCHHHHH
Q 000529 404 VYQGPRELVL 413 (1441)
Q Consensus 404 v~~G~~~~~~ 413 (1441)
++.|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=360.69 Aligned_cols=215 Identities=24% Similarity=0.360 Sum_probs=187.0
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|++..+. +..+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488889887652 34699999999999999999999999999999999998763 479999999876
Q ss_pred Cc-cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000529 923 KQ-ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1441)
Q Consensus 923 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1001 (1441)
.. ...+|.+|||+|+..++|++||.||+.|+...+ ..+..+.+++++++++.++|.+..++.+ .+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 43 234678999999999999999999999986543 2344556677899999999998888764 46999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcC
Q 000529 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1441)
Q Consensus 1002 qRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~ 1080 (1441)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++|||+. ++..++|++++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998654 899999999986 68899999999985 89999998
Q ss_pred CC
Q 000529 1081 LG 1082 (1441)
Q Consensus 1081 ~~ 1082 (1441)
+.
T Consensus 234 ~~ 235 (377)
T PRK11607 234 PE 235 (377)
T ss_pred HH
Confidence 63
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=342.58 Aligned_cols=217 Identities=28% Similarity=0.387 Sum_probs=180.6
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++.++ ++.+|+|||+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367888887653 2469999999999999999999999999999999999865 3479999999876
Q ss_pred Ccc-ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000529 923 KQE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1441)
Q Consensus 923 ~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1000 (1441)
... ..++.++|++|++.+++.+||+||+.+....+.. .........+.++++++.++|.+..++.+ ..|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 432 2245699999999888889999999886543211 00122333456788999999987777664 3699999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1001 rqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEec
Confidence 99999999999999999999999999999999999999999875 899999999986 47788999999975 8999998
Q ss_pred CC
Q 000529 1080 PL 1081 (1441)
Q Consensus 1080 ~~ 1081 (1441)
+.
T Consensus 220 ~~ 221 (239)
T cd03296 220 TP 221 (239)
T ss_pred CH
Confidence 75
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=373.05 Aligned_cols=210 Identities=23% Similarity=0.407 Sum_probs=173.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCC
Q 000529 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIG 239 (1441)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 239 (1441)
++.+||+|+|++|+|||.|||+|||||||||+.++|..+++|+ +|+|++||+|+.++++ ++.+|+|.|+|.+|.
T Consensus 479 p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs 555 (716)
T KOG0058|consen 479 PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS 555 (716)
T ss_pred CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeec
Confidence 5678999999999999999999999999999999999999999 9999999999998876 478999999998876
Q ss_pred CCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccc
Q 000529 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1441)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1441)
-||+|||.|+... . +.|+.+.++.. .+.-=-+.++++.+||.||+
T Consensus 556 -~sI~eNI~YG~~~--~-----------------------t~e~i~~AAk~--------ANah~FI~~~p~gY~T~VGE- 600 (716)
T KOG0058|consen 556 -GSIRENIAYGLDN--A-----------------------TDEEIEAAAKM--------ANAHEFITNFPDGYNTVVGE- 600 (716)
T ss_pred -ccHHHHHhcCCCC--C-----------------------CHHHHHHHHHH--------hChHHHHHhCccccccccCC-
Confidence 5999999998641 1 11111111110 11111234789999999997
Q ss_pred cccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000529 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1441)
Q Consensus 320 ~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~ 399 (1441)
.+-.||||||||++|||||+++|+||||||.||+||+.+...+.+.|.+..+ + .+|++|.|.. .+.+.+|+|++++
T Consensus 601 kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~-rTVlvIAHRL-STV~~Ad~Ivvi~ 676 (716)
T KOG0058|consen 601 KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--G-RTVLVIAHRL-STVRHADQIVVID 676 (716)
T ss_pred ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--C-CeEEEEehhh-hHhhhccEEEEEc
Confidence 4445999999999999999999999999999999999999999999987643 3 5555566654 5678899999999
Q ss_pred CCeEEEEcCHHHHHH
Q 000529 400 DGQIVYQGPRELVLE 414 (1441)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1441)
+|++++.|+++|+++
T Consensus 677 ~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 677 KGRVVEMGTHDELLS 691 (716)
T ss_pred CCeEEecccHHHHhh
Confidence 999999999999874
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=362.64 Aligned_cols=215 Identities=26% Similarity=0.362 Sum_probs=184.9
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++++. ++.+|+|+|++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 367888887652 34699999999999999999999999999999999998763 479999999876
Q ss_pred Ccc-ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000529 923 KQE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1441)
Q Consensus 923 ~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1001 (1441)
... ..++.+||++|+..+++.+||+||+.|....+. .+.++.+++++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 432 234679999999999999999999998765431 234455567899999999998887765 46999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcC
Q 000529 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1441)
Q Consensus 1002 qRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~ 1080 (1441)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++...+|++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999986 57889999999985 89999998
Q ss_pred CC
Q 000529 1081 LG 1082 (1441)
Q Consensus 1081 ~~ 1082 (1441)
+.
T Consensus 218 ~~ 219 (369)
T PRK11000 218 PL 219 (369)
T ss_pred HH
Confidence 63
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=341.78 Aligned_cols=212 Identities=26% Similarity=0.358 Sum_probs=178.9
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
.++|+++.++ ++.+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccc
Confidence 4667776652 34699999999999999999999999999999999998653 47999999987542
Q ss_pred c---c-cceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000529 925 E---T-FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1441)
Q Consensus 925 ~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1000 (1441)
. . .++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ ..|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHH
Confidence 1 1 23468999999999999999999987643321 223344556789999999988777664 4699999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcC
Q 000529 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1441)
Q Consensus 1001 rqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~ 1080 (1441)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++.|+
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 216 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGT 216 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeC
Confidence 99999999999999999999999999999999999999999877999999999986 58889999999985 89999887
Q ss_pred C
Q 000529 1081 L 1081 (1441)
Q Consensus 1081 ~ 1081 (1441)
.
T Consensus 217 ~ 217 (232)
T cd03218 217 P 217 (232)
T ss_pred H
Confidence 5
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=353.79 Aligned_cols=212 Identities=25% Similarity=0.379 Sum_probs=183.6
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|+++++. ++.+|+|+||++++||++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67788877652 3569999999999999999999999999999999999866 35899999998764
Q ss_pred c--cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000529 924 Q--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1441)
Q Consensus 924 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1001 (1441)
. ...++.+||++|++.+++.+||.|++.+.+.++. .+.++..++++++++.+||.+..++.++ .||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHH
Confidence 3 2345679999999999999999999998776542 2334445568899999999998887754 5999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1002 qRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
||++||+||+++|++|+|||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999965 799999999986 68889999999985 899999986
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=339.23 Aligned_cols=215 Identities=28% Similarity=0.417 Sum_probs=179.2
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|+++.++.. .....+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcc
Confidence 4677887765311 0112699999999999999999999999999999999998653 4799999998764
Q ss_pred c--cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000529 924 Q--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1441)
Q Consensus 924 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1001 (1441)
. ..+++.++|++|++.+++.+||+||+.+....+. ....+..+.++++++.+|+.+..++.+ ..||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 2345679999999988898999999987654431 233445567889999999988777764 46999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1002 qRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++. ++.+.+|++++|++ |++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999877999999999986 57788999999985 7887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=371.62 Aligned_cols=214 Identities=29% Similarity=0.433 Sum_probs=178.7
Q ss_pred CCceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcC
Q 000529 840 EPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG 919 (1441)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 919 (1441)
-...++|+|++|.+.. ++..+|+|+|++|+|||.+||+|+||||||||+|+|+|..+ +..|+|.+||
T Consensus 468 ~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~dg 534 (709)
T COG2274 468 LQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDG 534 (709)
T ss_pred cCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC
Confidence 3457999999999863 23369999999999999999999999999999999999876 3589999999
Q ss_pred ccCCc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------ccccccc
Q 000529 920 YPKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-------LRQSLVG 989 (1441)
Q Consensus 920 ~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg 989 (1441)
.+... ..+|+.+|||+|++.++. -|++||+.++. ++.+.+ .+.++++..|..+ -.|+.+|
T Consensus 535 ~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e----~i~~A~~~ag~~~fI~~lP~gy~t~v~ 604 (709)
T COG2274 535 VDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDE----EIIEAAQLAGAHEFIENLPMGYDTPVG 604 (709)
T ss_pred EeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHH----HHHHHHHHhCcHHHHHhcccccccccc
Confidence 98754 457899999999998875 69999997652 223322 2344444444433 3466777
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEE
Q 000529 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1069 (1441)
Q Consensus 990 ~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL 1069 (1441)
+.| .+||||||||++|||||+++|+||+||||||+||+++.+.|++.|.++. .|+|+|+++|+++ ..+.+|++++|
T Consensus 605 E~G-~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl 680 (709)
T COG2274 605 EGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVL 680 (709)
T ss_pred cCC-CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEc
Confidence 644 4799999999999999999999999999999999999999999999986 4799999999985 67899999999
Q ss_pred ecCcEEEEEcCC
Q 000529 1070 KRGGREVYVGPL 1081 (1441)
Q Consensus 1070 ~~gG~~v~~G~~ 1081 (1441)
+ +|+++..|+.
T Consensus 681 ~-~Gkiv~~gs~ 691 (709)
T COG2274 681 D-QGKIVEQGSH 691 (709)
T ss_pred c-CCceeccCCH
Confidence 8 5899999996
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=363.12 Aligned_cols=218 Identities=27% Similarity=0.359 Sum_probs=184.6
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.+. ++.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEc
Confidence 367888887652 35799999999999999999999999999999999998663 479999999876
Q ss_pred Cc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 998 (1441)
.. ...++.+||++|+..+++.+||+|++.++...... .....+..+++++++++.+++.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 43 23567799999999988899999999876422110 01112334567899999999998888765 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~ 1078 (1441)
|||||+.|||||+++|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 57789999999985 899999
Q ss_pred cCCC
Q 000529 1079 GPLG 1082 (1441)
Q Consensus 1079 G~~~ 1082 (1441)
|+..
T Consensus 221 G~~~ 224 (402)
T PRK09536 221 GPPA 224 (402)
T ss_pred cCHH
Confidence 9874
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=336.05 Aligned_cols=206 Identities=29% Similarity=0.394 Sum_probs=174.5
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
+++|+++.++ ++.+|+|+||++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 4677776552 2469999999999999999999999999999999999865 358999999987643
Q ss_pred -cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000529 925 -ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003 (1441)
Q Consensus 925 -~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1003 (1441)
...++.++|++|++.+++.+||+||+.+....+. . .++.++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHH
Confidence 2335679999999988889999999988654321 1 1345788999999988777764 3599999999
Q ss_pred HHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1004 v~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
|+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|++ |++++.|
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999877899999999986 46678999999985 7888765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=338.50 Aligned_cols=208 Identities=29% Similarity=0.402 Sum_probs=172.0
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
+++|+++.++.. ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~ 70 (218)
T cd03255 2 ELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISK 70 (218)
T ss_pred eEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhh
Confidence 567777665310 011569999999999999999999999999999999999865 347999999987643
Q ss_pred cc-------cceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000529 925 ET-------FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1441)
Q Consensus 925 ~~-------~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 997 (1441)
.. .++.++|++|++.+++.+||+|++.+....+. ......++.++++++.+||.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (218)
T cd03255 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SELS 142 (218)
T ss_pred cchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcC
Confidence 11 24579999999999999999999998765432 223334556889999999988777664 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 998 gGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++ +.+|++++|++ |+
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GK 217 (218)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-Cc
Confidence 9999999999999999999999999999999999999999999987 5899999999986 34 48999999986 54
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=340.36 Aligned_cols=213 Identities=24% Similarity=0.290 Sum_probs=176.4
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCC-----CCceEEEEEEEcC
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYITGDIRISG 919 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~-----~~~~~~G~i~i~g 919 (1441)
+++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.. . +.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDG 66 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECC
Confidence 4667776542 246999999999999999999999999999999999976 4 4579999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 994 (1441)
.+... ...++.++|++|++.++ .+||+||+.+....+. .......+++++++++.+|+.+..+.... +.
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 87532 22456799999998877 7999999988654331 11222234567899999999877665431 24
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 995 ~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
.||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ +|||++||+++ .+.+.+|++++|++ |+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~ 217 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GR 217 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CE
Confidence 69999999999999999999999999999999999999999999999876 99999999986 57778999999985 89
Q ss_pred EEEEcCC
Q 000529 1075 EVYVGPL 1081 (1441)
Q Consensus 1075 ~v~~G~~ 1081 (1441)
+++.|+.
T Consensus 218 i~~~g~~ 224 (227)
T cd03260 218 LVEFGPT 224 (227)
T ss_pred EEEecCc
Confidence 9999875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=337.60 Aligned_cols=221 Identities=38% Similarity=0.617 Sum_probs=180.4
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCC-CceEEEEEEEcCccC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGDIRISGYPK 922 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i~g~~~ 922 (1441)
+.|+|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 4577777766321 013579999999999999999999999999999999999764 123579999999876
Q ss_pred CccccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHHcCCcccccccccCCCCCcCCHHHH
Q 000529 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEE-VMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1441)
Q Consensus 923 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~-~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1001 (1441)
.....++.++|++|++.+++.+||+||+.|......+...........+++ .++.+++.+..++.+ +.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHH
Confidence 544456779999999999999999999998765433222122222334555 899999987776654 46999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1002 qRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999999877899999999985468899999999985 8988765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=328.48 Aligned_cols=208 Identities=27% Similarity=0.369 Sum_probs=181.4
Q ss_pred CCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCccc----cceEEEEeccCCCCC
Q 000529 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQET----FARISGYCEQNDIHS 941 (1441)
Q Consensus 866 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~Q~~~~~ 941 (1441)
.+...+++|||+++++||++||+||||||||||+|+|+|..++ ..|+|.++|.++.... .+.-++--+|...++
T Consensus 14 FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 14 FGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred cCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 3678899999999999999999999999999999999998764 4799999999876432 234578889999999
Q ss_pred CCCCHHHHHHHHHHhcC--------CCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh
Q 000529 942 PFVTVYESLFYSAWLRL--------PPE-VNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVA 1012 (1441)
Q Consensus 942 ~~lTv~E~l~f~~~lr~--------~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~ 1012 (1441)
+.+||.||+..++..+. +.. ...++..+++.++|+.+||.+.+|.+.| +||+||||||.|||||+.
T Consensus 92 ~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~ 166 (250)
T COG0411 92 PGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALAT 166 (250)
T ss_pred CCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhc
Confidence 99999999988765331 111 1234556678899999999999999876 499999999999999999
Q ss_pred CCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCC
Q 000529 1013 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1013 ~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1082 (1441)
+|++|+||||.+||.+....++.+.|+++.++ |.||+++-||++. ++.+||||++|+. |+++..|++.
T Consensus 167 ~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~-G~~IAeG~P~ 235 (250)
T COG0411 167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNY-GEVIAEGTPE 235 (250)
T ss_pred CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccC-CcCcccCCHH
Confidence 99999999999999999999999999999874 7999999999985 8999999999985 8999999984
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=360.39 Aligned_cols=216 Identities=27% Similarity=0.421 Sum_probs=182.4
Q ss_pred CceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCc
Q 000529 841 PYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY 920 (1441)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 920 (1441)
...++|+||+|+|+.. ++.++|+|+||+|+|||.+||+||||+||||+.++|..... +.+|.|.+||.
T Consensus 463 ~G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~ 530 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGV 530 (716)
T ss_pred cceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCe
Confidence 3479999999999864 35689999999999999999999999999999999998765 45899999999
Q ss_pred cCCc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHH-----HHHHHcCCcccccccccCCC
Q 000529 921 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIE-----EVMELVELKPLRQSLVGLPG 992 (1441)
Q Consensus 921 ~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~-----~~l~~l~L~~~~~~~vg~~~ 992 (1441)
|+++ ..+++++|+|.|+|.++. -||+||+.|+.. ..+.++.....+ +.+ .++.+-.|+.||..|
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGEkG 602 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGEKG 602 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHH--HhCccccccccCCcc
Confidence 9865 346789999999999986 699999999753 233333322221 122 255666899999876
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 993 ~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
. .||||||||++|||||++||+||||||+||+||+++...|.++|.++.+ ++|||++.|..+ ..+.+|+|+++++
T Consensus 603 ~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~- 677 (716)
T KOG0058|consen 603 S-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK- 677 (716)
T ss_pred c-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC-
Confidence 5 5999999999999999999999999999999999999999999998865 699999999976 5788999999985
Q ss_pred cEEEEEcCC
Q 000529 1073 GREVYVGPL 1081 (1441)
Q Consensus 1073 G~~v~~G~~ 1081 (1441)
|++++.|.-
T Consensus 678 G~V~E~G~h 686 (716)
T KOG0058|consen 678 GRVVEMGTH 686 (716)
T ss_pred CeEEecccH
Confidence 899999964
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=354.87 Aligned_cols=206 Identities=26% Similarity=0.382 Sum_probs=179.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC--ccceEEEEcCCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1441)
+.+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.+||++|++.+++.+|
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 46999999999999999999999999999999999999998 999999999876432 2467999999998999999
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1441)
|+||+.+.....+.. . .+....++.+++.+||++..++.+++
T Consensus 131 v~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~ll~~~~L~~~~~~~~~~---- 172 (340)
T PRK13536 131 VRENLLVFGRYFGMS----------T------------------------REIEAVIPSLLEFARLESKADARVSD---- 172 (340)
T ss_pred HHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhCCChhh----
Confidence 999999765443210 0 01122356688999999999998876
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 GLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~ 402 (1441)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++.. .+++|+.++|+.+++.++||+|++|++|+
T Consensus 173 -LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~--~g~tilisSH~l~e~~~~~d~i~il~~G~ 249 (340)
T PRK13536 173 -LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVLEAGR 249 (340)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999998754 35677778999999999999999999999
Q ss_pred EEEEcCHHHHHH
Q 000529 403 IVYQGPRELVLE 414 (1441)
Q Consensus 403 iv~~G~~~~~~~ 414 (1441)
++++|+++++.+
T Consensus 250 i~~~g~~~~l~~ 261 (340)
T PRK13536 250 KIAEGRPHALID 261 (340)
T ss_pred EEEEcCHHHHHh
Confidence 999999998864
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=342.51 Aligned_cols=204 Identities=29% Similarity=0.337 Sum_probs=170.7
Q ss_pred eeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcc------ccceEEEEeccCCCCCC
Q 000529 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE------TFARISGYCEQNDIHSP 942 (1441)
Q Consensus 869 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~~~~~ 942 (1441)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 4699999999999999999999999999999999998653 479999999876421 23567999999999889
Q ss_pred CCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCee
Q 000529 943 FVTVYESLFYSAWLRL-----PPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSII 1017 (1441)
Q Consensus 943 ~lTv~E~l~f~~~lr~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iL 1017 (1441)
.+||+||+.+...... ..........+.++++++.++|.+..++.+ ..|||||||||+||+||+.+|+||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999987532110 001111233456788999999987766654 469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1018 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1018 lLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 229 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPP 229 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCH
Confidence 999999999999999999999999764 899999999987 57778999999985 899999875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=348.50 Aligned_cols=218 Identities=27% Similarity=0.405 Sum_probs=180.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC-----ccceEEEEcCCCC-CC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-----PERTAAYISQHDN-HI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 238 (1441)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999998 999999999986532 2367999999853 44
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc--ccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD--ICADTMV 316 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~v 316 (1441)
..+||+||+.|+....+.. .++....++++++.+||+ +..|+.+
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~~~ 142 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------------------------------EEEIENRVKRAMNIVGLDYEDYKDKSP 142 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------------------------------HHHHHHHHHHHHHHcCCCchhhccCCc
Confidence 5689999999865432210 111223467889999997 5677776
Q ss_pred ccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEE
Q 000529 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1441)
Q Consensus 317 g~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vi 396 (1441)
++ ||||||||++||+||+.+|++|+|||||+|||+.++.++.+.|+++.+ ..+++|+.++|+.+++.++||+|+
T Consensus 143 ~~-----LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 143 FE-----LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHK-EYNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred cc-----CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEE
Confidence 65 999999999999999999999999999999999999999999998754 346777888999999999999999
Q ss_pred EecCCeEEEEcCHHHHHH---HHHhcCCCCCC
Q 000529 397 LLSDGQIVYQGPRELVLE---FFESMGFKCPK 425 (1441)
Q Consensus 397 lL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 425 (1441)
+|++|+++++|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988753 23344555443
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=334.87 Aligned_cols=192 Identities=29% Similarity=0.384 Sum_probs=163.1
Q ss_pred eeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCccccceEEEEeccCCC-CCCCCCHH
Q 000529 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDI-HSPFVTVY 947 (1441)
Q Consensus 869 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~-~~~~lTv~ 947 (1441)
+.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+......++.+||++|++. .+...|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 469999999999999999999999999999999999865 358999999987644344567999999974 33467999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCC
Q 000529 948 ESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027 (1441)
Q Consensus 948 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD 1027 (1441)
||+.+..... . . ..+.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754322 1 1 1245788999999998877764 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEE
Q 000529 1028 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1441)
Q Consensus 1028 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v 1076 (1441)
+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999999877999999999986 46678999999985 6764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=339.49 Aligned_cols=217 Identities=25% Similarity=0.308 Sum_probs=180.4
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|+++.++.. .+.+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 4577777665310 0113699999999999999999999999999999999998763 4799999998764
Q ss_pred cc------ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000529 924 QE------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1441)
Q Consensus 924 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 997 (1441)
.. ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.++|.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 31 124679999999999999999999988654331 233344556889999999988777664 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEE
Q 000529 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1441)
Q Consensus 998 gGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v 1076 (1441)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 56778999999975 8999
Q ss_pred EEcCC
Q 000529 1077 YVGPL 1081 (1441)
Q Consensus 1077 ~~G~~ 1081 (1441)
+.|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 98875
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=348.38 Aligned_cols=218 Identities=21% Similarity=0.303 Sum_probs=180.2
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|+++.++... ...+.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEECC
Confidence 67888887763210 0124699999999999999999999999999999999998763 4899999998864
Q ss_pred cc-----ccceEEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCc
Q 000529 924 QE-----TFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK--PLRQSLVGLPGVNG 995 (1441)
Q Consensus 924 ~~-----~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~ 995 (1441)
.. ..++.+||++|++. .+...||+|++.|..... ..+.++..++++++++.+||. +..++.+ ..
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----FE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----cc
Confidence 31 34567999999863 333579999998865432 234555566789999999997 5566653 46
Q ss_pred CCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 996 LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999865 899999999986 46678999999985 89
Q ss_pred EEEEcCC
Q 000529 1075 EVYVGPL 1081 (1441)
Q Consensus 1075 ~v~~G~~ 1081 (1441)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13637 223 CELQGTP 229 (287)
T ss_pred EEEECCH
Confidence 9999986
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=339.59 Aligned_cols=214 Identities=22% Similarity=0.338 Sum_probs=180.2
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 46778776652 2469999999999999999999999999999999999865 35799999998764
Q ss_pred c-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000529 924 Q-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 924 ~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 998 (1441)
. ...++.++|++|++.+++.+||+||+.+...... .....+.++.+.++++.+||.+..+..+ ..|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 2 1235679999999988889999999987642111 1233444566889999999987777664 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~ 1078 (1441)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999986 46678999999985 899999
Q ss_pred cCC
Q 000529 1079 GPL 1081 (1441)
Q Consensus 1079 G~~ 1081 (1441)
|+.
T Consensus 218 g~~ 220 (240)
T PRK09493 218 GDP 220 (240)
T ss_pred CCH
Confidence 875
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=335.30 Aligned_cols=200 Identities=29% Similarity=0.446 Sum_probs=170.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1441)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 46999999999999999999999999999999999999998 9999999998764332 3579999999888889999
Q ss_pred HHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccC
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1441)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 323 (1441)
+||+.++....+.. . .+....++.+++.+||++..++.+++
T Consensus 90 ~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (213)
T cd03259 90 AENIAFGLKLRGVP----------K------------------------AEIRARVRELLELVGLEGLLNRYPHE----- 130 (213)
T ss_pred HHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhcChhh-----
Confidence 99999865432110 0 00112356789999999888888766
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000529 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1441)
Q Consensus 324 LSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~i 403 (1441)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++. ..+++|+.++|+.+++.+++|+|++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR-ELGITTIYVTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 3356677789999999999999999999999
Q ss_pred EEEc
Q 000529 404 VYQG 407 (1441)
Q Consensus 404 v~~G 407 (1441)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=337.31 Aligned_cols=205 Identities=28% Similarity=0.391 Sum_probs=175.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc------cceEEEEcCCCCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDNHIG 239 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~~ 239 (1441)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999998 9999999998765321 357999999998899
Q ss_pred CCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccc
Q 000529 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1441)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1441)
.+||+||+.+.....+.. ..+....++.+++.+||++..++.+.+
T Consensus 96 ~~t~~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~- 140 (233)
T cd03258 96 SRTVFENVALPLEIAGVP----------------------------------KAEIEERVLELLELVGLEDKADAYPAQ- 140 (233)
T ss_pred CCcHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHCCChhhhhcChhh-
Confidence 999999999865432210 001122356789999999888877765
Q ss_pred cccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000529 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1441)
Q Consensus 320 ~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~ 399 (1441)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.. .++++|++++|+.+++.+++|++++|+
T Consensus 141 ----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 141 ----LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR-ELGLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999998754 335677778888999999999999999
Q ss_pred CCeEEEEcCHHHHH
Q 000529 400 DGQIVYQGPRELVL 413 (1441)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1441)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999987763
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=346.31 Aligned_cols=204 Identities=26% Similarity=0.306 Sum_probs=174.0
Q ss_pred CCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcc---c----cceEEEEeccCC
Q 000529 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE---T----FARISGYCEQND 938 (1441)
Q Consensus 866 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~ 938 (1441)
++.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... . .++.++|++|++
T Consensus 34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 3456799999999999999999999999999999999998653 479999999875421 1 135699999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeE
Q 000529 939 IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1018 (1441)
Q Consensus 939 ~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLl 1018 (1441)
.+++.+||+||+.+...... .......+.++++++.++|.+..++.++ .||||||||++|||||+.+|+||+
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEE
Confidence 98989999999988754321 2233445568899999999887777654 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1019 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1019 LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999754 899999999986 57788999999985 899998875
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=336.27 Aligned_cols=213 Identities=25% Similarity=0.386 Sum_probs=178.4
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
.++|+++.++. +++++|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (220)
T cd03263 2 QIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRT 68 (220)
T ss_pred EEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 56777766521 11469999999999999999999999999999999999865 357999999987643
Q ss_pred --cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000529 925 --ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1441)
Q Consensus 925 --~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1002 (1441)
...++.++|++|++.+++..|++||+.+....+. ...+...+.++++++.++|.+..++.+ ..||+||||
T Consensus 69 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 140 (220)
T cd03263 69 DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKR 140 (220)
T ss_pred chHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHH
Confidence 2345679999999988889999999988654432 223334456889999999987777664 369999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1003 Rv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++|++ |++++.|+.
T Consensus 141 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999999999999999999999876 699999999986 46678999999985 899998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=336.43 Aligned_cols=217 Identities=25% Similarity=0.321 Sum_probs=179.4
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.++.. ...+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 37888988876321 012469999999999999999999999999999999999865 3589999999876
Q ss_pred Cccc------c-ceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000529 923 KQET------F-ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG 995 (1441)
Q Consensus 923 ~~~~------~-~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 995 (1441)
.... . ++.++|++|++.+++.+|++||+.+....+ ....++.+++++++++.+||.+..++.+ ..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 4311 1 256999999998888899999998865432 1223344567889999999988777654 46
Q ss_pred CCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 996 LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
||||||||++||+||+.+|+||+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++ +.+|++++|++ |+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~-~~~~~~~~l~~-G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LA-KRMSRQLEMRD-GR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhhCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999975 5899999999986 34 45689999974 89
Q ss_pred EEEEcCC
Q 000529 1075 EVYVGPL 1081 (1441)
Q Consensus 1075 ~v~~G~~ 1081 (1441)
++..|++
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9998886
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=313.93 Aligned_cols=217 Identities=26% Similarity=0.383 Sum_probs=182.5
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++.+|++|++. ++.+|++||++++|||++||+||||||||||||.|+|...+ ..|++.++|.+..
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChh
Confidence 46678888863 46799999999999999999999999999999999997763 4799999999875
Q ss_pred c---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000529 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1441)
Q Consensus 924 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1000 (1441)
. ....+.-+..+|+..+....||+|-+.++..-... .....+..+.++++|+..++.+++.+. ...|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchH
Confidence 4 34566779999999887778999999987432211 112224445678999999999988765 34699999
Q ss_pred HHHHHHHHHHhh------CCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 1001 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 1001 rqRv~iA~aL~~------~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
||||.+||.|+. ++++||||||||.||...+..++++.|+++++|..|+++.||.+. ...++|+|++|+ +||
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~-~Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLH-QGR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeee-CCe
Confidence 999999999975 456999999999999999999999999999999999999999985 678899999998 489
Q ss_pred EEEEcCCCC
Q 000529 1075 EVYVGPLGH 1083 (1441)
Q Consensus 1075 ~v~~G~~~~ 1083 (1441)
++..|++.+
T Consensus 219 v~a~g~p~~ 227 (259)
T COG4559 219 VIASGSPQD 227 (259)
T ss_pred EeecCCHHH
Confidence 999999854
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=317.35 Aligned_cols=210 Identities=22% Similarity=0.369 Sum_probs=184.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCcc----ceEEEEcCCCCCC
Q 000529 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHI 238 (1441)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1441)
+++++++|||+.+++||+++++|||||||||.+.++.|+..|+ +|+|.+||.+++.++.. .-+||+||++..|
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 4567999999999999999999999999999999999999999 99999999999887653 3589999999999
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
-.+||+|||.-..+.+... .+..+.+.+.+.+|+.|+|.|++|..-..
T Consensus 92 r~LtV~dNi~~vlE~~~~d--------------------------------~~~~~~~~~l~~LL~ef~i~hlr~~~a~s 139 (243)
T COG1137 92 RKLTVEDNIMAVLEIREKD--------------------------------LKKAERKEELDALLEEFHITHLRDSKAYS 139 (243)
T ss_pred hcCcHHHHHHHHHhhhhcc--------------------------------hhHHHHHHHHHHHHHHhchHHHhcCcccc
Confidence 9999999999776544210 01122344578899999999999987655
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
||||||+|+.|||||+.+|+.++||||++|.||-+..+|.+.++.+.. .+.-|++.-|...|+.+++||.+++
T Consensus 140 -----LSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREtL~i~dRaYIi 212 (243)
T COG1137 140 -----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRETLDICDRAYII 212 (243)
T ss_pred -----cccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHHHhhhheEEEE
Confidence 999999999999999999999999999999999999999999998754 4566666789999999999999999
Q ss_pred cCCeEEEEcCHHHHHH
Q 000529 399 SDGQIVYQGPRELVLE 414 (1441)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1441)
++|++..+|+++++.+
T Consensus 213 ~~G~vla~G~p~ei~~ 228 (243)
T COG1137 213 SDGKVLAEGSPEEIVN 228 (243)
T ss_pred ecCeEEecCCHHHHhc
Confidence 9999999999999864
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=337.61 Aligned_cols=210 Identities=28% Similarity=0.418 Sum_probs=176.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1441)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 35999999999999999999999999999999999999987 9999999998764432 3579999999888889999
Q ss_pred HHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccC
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1441)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 323 (1441)
+||+.++....+...+ + + ..+....++.+++.+||++..++.+++
T Consensus 92 ~e~l~~~~~~~~~~~~-----------------~--~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 136 (239)
T cd03296 92 FDNVAFGLRVKPRSER-----------------P--P-----------EAEIRAKVHELLKLVQLDWLADRYPAQ----- 136 (239)
T ss_pred HHHHhhhhhhcccccc-----------------C--C-----------HHHHHHHHHHHHHHcCChhhhhcChhh-----
Confidence 9999987543211000 0 0 001122456789999998888887766
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000529 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1441)
Q Consensus 324 LSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~i 403 (1441)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++. ..+.+|+.++|+.+++.+++|+|++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD-ELHVTTVFVTHDQEEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 999999999999999999999999999999999999999999998754 3355677788888999999999999999999
Q ss_pred EEEcCHHHHH
Q 000529 404 VYQGPRELVL 413 (1441)
Q Consensus 404 v~~G~~~~~~ 413 (1441)
++.|+++++.
T Consensus 216 ~~~~~~~~~~ 225 (239)
T cd03296 216 EQVGTPDEVY 225 (239)
T ss_pred EEecCHHHHh
Confidence 9999988763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=335.60 Aligned_cols=205 Identities=30% Similarity=0.396 Sum_probs=175.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC--ccceEEEEcCCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1441)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 46999999999999999999999999999999999999998 999999998875321 1357999999998899999
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1441)
|+||+.+..+..+.. ..+....++.+++.+||++..++.+++
T Consensus 90 v~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 131 (220)
T cd03265 90 GWENLYIHARLYGVP----------------------------------GAERRERIDELLDFVGLLEAADRLVKT---- 131 (220)
T ss_pred HHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCHHHhhCChhh----
Confidence 999999875433210 001123467789999999888888876
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 GLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~ 402 (1441)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.. ..+++|+.++|+.+++.+++|++++|.+|+
T Consensus 132 -LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 132 -YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKE-EFGMTILLTTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999998754 335667778999999999999999999999
Q ss_pred EEEEcCHHHH
Q 000529 403 IVYQGPRELV 412 (1441)
Q Consensus 403 iv~~G~~~~~ 412 (1441)
++..|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999987753
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=345.58 Aligned_cols=225 Identities=28% Similarity=0.388 Sum_probs=183.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCC-------CccceEEEEcCCC-C
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-------VPERTAAYISQHD-N 236 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d-~ 236 (1441)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++ .
T Consensus 19 ~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 95 (288)
T PRK13643 19 SRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPES 95 (288)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcch
Confidence 35999999999999999999999999999999999999998 99999999997531 1135799999985 2
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc-cccccc
Q 000529 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTM 315 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1441)
.+...||.||+.|+.+..+.. ..+...++.++++.+||. ...++.
T Consensus 96 ~l~~~tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~ 141 (288)
T PRK13643 96 QLFEETVLKDVAFGPQNFGIP----------------------------------KEKAEKIAAEKLEMVGLADEFWEKS 141 (288)
T ss_pred hcccchHHHHHHhHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhccCC
Confidence 444579999999976543210 011223467789999996 466766
Q ss_pred cccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
+.+ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. .+.+|++++|+.+++.++||+|
T Consensus 142 ~~~-----LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~vtHd~~~~~~~~dri 214 (288)
T PRK13643 142 PFE-----LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ--SGQTVVLVTHLMDDVADYADYV 214 (288)
T ss_pred ccc-----CCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEE
Confidence 655 999999999999999999999999999999999999999999988753 3567777899999999999999
Q ss_pred EEecCCeEEEEcCHHHHH---HHHHhcCCCCCCCCChhhHH
Q 000529 396 ILLSDGQIVYQGPRELVL---EFFESMGFKCPKRKGVADFL 433 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~~adfl 433 (1441)
++|++|+++++|+++++. +.++..|+.+|.....++.+
T Consensus 215 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 215 YLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 999999999999999874 34556777776654444433
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=348.92 Aligned_cols=206 Identities=26% Similarity=0.387 Sum_probs=177.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC--ccceEEEEcCCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1441)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 45999999999999999999999999999999999999998 999999999875322 2467999999998899999
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1441)
|+||+.+.....+.. . .+....++.+++.+||++..++.+++
T Consensus 94 v~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~ll~~~~l~~~~~~~~~~---- 135 (303)
T TIGR01288 94 VRENLLVFGRYFGMS----------T------------------------REIEAVIPSLLEFARLESKADVRVAL---- 135 (303)
T ss_pred HHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCChhHhcCchhh----
Confidence 999998754432210 0 00112356688999999988988876
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 GLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~ 402 (1441)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. .+++|+.++|+.+++.++||+|++|++|+
T Consensus 136 -LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~g~til~~sH~~~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 136 -LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVLESGR 212 (303)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999998754 35677778999999999999999999999
Q ss_pred EEEEcCHHHHHH
Q 000529 403 IVYQGPRELVLE 414 (1441)
Q Consensus 403 iv~~G~~~~~~~ 414 (1441)
+++.|+++++.+
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999988753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=334.37 Aligned_cols=205 Identities=26% Similarity=0.336 Sum_probs=172.8
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|+++.++ +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 46778777652 12469999999999999999999999999999999999865 34799999998764
Q ss_pred cc------ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000529 924 QE------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1441)
Q Consensus 924 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 997 (1441)
.. .+++.++|++|++.+++.+|+.||+.+....+. ...+..++.++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 235679999999988889999999988754331 223344567889999999987766654 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEec
Q 000529 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1441)
Q Consensus 998 gGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~ 1071 (1441)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|++
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~ 212 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDD 212 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecC
Confidence 99999999999999999999999999999999999999999999877999999999986 57778999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=313.84 Aligned_cols=207 Identities=30% Similarity=0.433 Sum_probs=178.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCcc---ceEEEEcCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE---RTAAYISQHDNHIGEM 241 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~l 241 (1441)
+.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|+|++||++++.+.+. +.-|..+|+..+-+..
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 45899999999999999999999999999999999999998 99999999999888764 5678999998888889
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1441)
||+|-+.++..-.+.+.. ..+...+++.+|...++.+.+.+..-
T Consensus 91 tv~eVV~mGr~p~~~g~~--------------------------------~~e~~~i~~~ala~~d~~~la~R~y~---- 134 (259)
T COG4559 91 TVQEVVQMGRIPHRSGRE--------------------------------PEEDERIAAQALAATDLSGLAGRDYR---- 134 (259)
T ss_pred EHHHHHHhcccccccCCC--------------------------------chhhHHHHHHHHHHcChhhhhccchh----
Confidence 999999998654322110 01223457778889999888877654
Q ss_pred cCCChhhhhHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 322 RGVSGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 322 rGLSGGqrkRvsia~al~~------~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
.|||||||||.+||.|+. ++++||||||||+||..-...+++..|++++. +..|+.+.|+.+.+..+||+|
T Consensus 135 -~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~--g~~V~~VLHDLNLAA~YaDri 211 (259)
T COG4559 135 -TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE--GGAVLAVLHDLNLAAQYADRI 211 (259)
T ss_pred -hcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc--CCcEEEEEccchHHHHhhhee
Confidence 499999999999999974 45699999999999999999999999999873 366777899999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 000529 396 ILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1441)
++|++||++..|++++++
T Consensus 212 vll~~Grv~a~g~p~~vl 229 (259)
T COG4559 212 VLLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeeCCeEeecCCHHHhc
Confidence 999999999999999886
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=340.98 Aligned_cols=214 Identities=28% Similarity=0.375 Sum_probs=179.8
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|+++.+. ++.+|+||||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEcc
Confidence 67888887653 24699999999999999999999999999999999998653 4799999998753
Q ss_pred c-----------cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000529 924 Q-----------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPG 992 (1441)
Q Consensus 924 ~-----------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 992 (1441)
. ...++.++|++|++.+++..|+.||+.+...... ....+...+.++++++.+||.+..++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 142 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP---- 142 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh----
Confidence 2 1234579999999988888999999987543211 1233444566889999999987766654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 993 ~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
..||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++
T Consensus 143 -~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 143 -RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred -hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 469999999999999999999999999999999999999999999999877999999999986 57788999999985
Q ss_pred cEEEEEcCC
Q 000529 1073 GREVYVGPL 1081 (1441)
Q Consensus 1073 G~~v~~G~~ 1081 (1441)
|++++.|+.
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 899998875
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=320.78 Aligned_cols=204 Identities=24% Similarity=0.382 Sum_probs=186.5
Q ss_pred CCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCccccceEEEEeccCCCCCCCCC
Q 000529 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVT 945 (1441)
Q Consensus 866 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 945 (1441)
.+++.+++|+||.++||+++|++|+|||||||++++|.|... +.+|.|.++|.+.+.. .+.++||.|.+.-++|.+|
T Consensus 12 Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~-~~~rIGyLPEERGLy~k~t 88 (300)
T COG4152 12 FGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQE-IKNRIGYLPEERGLYPKMT 88 (300)
T ss_pred cCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhh-hhhhcccChhhhccCccCc
Confidence 467889999999999999999999999999999999999876 3589999999988654 3556999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCC
Q 000529 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025 (1441)
Q Consensus 946 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsg 1025 (1441)
|.|.|.|-|.++. ++.++.++.++.+|+.+++......++ +.||-|++|++.+-.+++++|++++||||+||
T Consensus 89 v~dql~yla~LkG---m~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLlILDEPFSG 160 (300)
T COG4152 89 VEDQLKYLAELKG---MPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSG 160 (300)
T ss_pred HHHHHHHHHHhcC---CcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEEEecCCccC
Confidence 9999999999873 566777788999999999999888775 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCC
Q 000529 1026 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1026 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1082 (1441)
|||.+.+.+-+.+.+++++|.|||+++|+++ .+-++||++++|++ |+.|.+|+..
T Consensus 161 LDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v~ 215 (300)
T COG4152 161 LDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVE 215 (300)
T ss_pred CChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccHH
Confidence 9999999999999999999999999999997 68899999999985 8999999873
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=333.15 Aligned_cols=200 Identities=29% Similarity=0.410 Sum_probs=171.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCccceEEEEcCCCCCCCCCCHH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1441)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999987 9999999998763 246799999998888889999
Q ss_pred HHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCC
Q 000529 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1441)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 324 (1441)
||+.++....+.. . .+....++.+++.+||++..++.+++ |
T Consensus 92 e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~-----L 132 (220)
T cd03293 92 DNVALGLELQGVP----------K------------------------AEARERAEELLELVGLSGFENAYPHQ-----L 132 (220)
T ss_pred HHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCCccc-----C
Confidence 9999875432210 0 00112456789999998888887765 9
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEec--CCe
Q 000529 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS--DGQ 402 (1441)
Q Consensus 325 SGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~--~G~ 402 (1441)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.. ..+++|+.++|+.+++.+++|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWR-ETGKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-HcCCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 99999999999999999999999999999999999999999998754 335667778888899999999999999 799
Q ss_pred EEEEcCH
Q 000529 403 IVYQGPR 409 (1441)
Q Consensus 403 iv~~G~~ 409 (1441)
++..++.
T Consensus 212 i~~~~~~ 218 (220)
T cd03293 212 IVAEVEV 218 (220)
T ss_pred EEEEEEe
Confidence 9998865
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=320.61 Aligned_cols=203 Identities=29% Similarity=0.403 Sum_probs=173.4
Q ss_pred CceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcc----ccceEEEEeccCCCCCC
Q 000529 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE----TFARISGYCEQNDIHSP 942 (1441)
Q Consensus 867 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~ 942 (1441)
++.++|++||+++++||+++|+|+|||||||||++|+|..+. .+|+|.++|.+++.. ..++-++||||....||
T Consensus 14 G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 14 GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 557899999999999999999999999999999999998763 479999999997642 23556999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeC
Q 000529 943 FVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE-LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021 (1441)
Q Consensus 943 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDE 1021 (1441)
.+||+|||..++..+.. ++..+..++++.+.+- |.+.++++.| .|||||||.++|||||+++|++|+|||
T Consensus 92 ~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAiaRALm~~PklLLLDE 162 (237)
T COG0410 92 RLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAIARALMSRPKLLLLDE 162 (237)
T ss_pred hCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999987654421 1122222677888874 6677777766 499999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCC
Q 000529 1022 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1022 PTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1082 (1441)
||.||-|.-.++|.+.|+++.++ |.||+++-+... ...+.+|+.++|.+ |++++.|+..
T Consensus 163 Ps~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~~G~~~ 222 (237)
T COG0410 163 PSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVLSGTAA 222 (237)
T ss_pred CccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEEecCHH
Confidence 99999999999999999999866 779999988875 47788999999985 8999999964
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=339.79 Aligned_cols=212 Identities=27% Similarity=0.349 Sum_probs=178.5
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 46777776652 24699999999999999999999999999999999998653 4799999998764
Q ss_pred ccccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000529 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003 (1441)
Q Consensus 924 ~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1003 (1441)
. ..+.+||++|++.+++.+||.||+.+....+ .....+.++.++++++.++|.+..++.+ ..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHH
Confidence 3 2345799999998888899999998765432 1233344556889999999987777654 4699999999
Q ss_pred HHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHhhCeEEEEec-CcEEEEEcCC
Q 000529 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGREVYVGPL 1081 (1441)
Q Consensus 1004 v~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~vllL~~-gG~~v~~G~~ 1081 (1441)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+.+|++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999986 57788999999984 5899988765
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=333.72 Aligned_cols=206 Identities=26% Similarity=0.365 Sum_probs=172.8
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
.++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 4667776652 12469999999999999999999999999999999999865 347999999987542
Q ss_pred c------ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000529 925 E------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 925 ~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 998 (1441)
. ..++.++|++|++.+++.+|++||+.+....+. ...++.++.++++++.+|+.+..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1 235679999999999999999999988754332 233444566889999999988777664 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.+|++++|++ |+
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999999999999999999999999999777999999999986 46678999999985 54
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=339.17 Aligned_cols=201 Identities=28% Similarity=0.380 Sum_probs=172.0
Q ss_pred eeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc---cccceEEEEeccCCCCCCCCC
Q 000529 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDIHSPFVT 945 (1441)
Q Consensus 869 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lT 945 (1441)
+.+|+|+|++|++||+++|+||||||||||+++|+|..++ ..|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 4699999999999999999999999999999999998653 47999999987542 233567899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCC
Q 000529 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP--LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1023 (1441)
Q Consensus 946 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPT 1023 (1441)
++||+.+...++. ...+...+.++++++.+++.+ ..++.+ +.|||||||||+|||||+.+|++|+|||||
T Consensus 92 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRYP-----HELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999988654431 233444566889999999985 556553 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1024 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1024 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 220 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTP 220 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999765 899999999986 57788999999985 899998875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=336.09 Aligned_cols=199 Identities=31% Similarity=0.449 Sum_probs=168.1
Q ss_pred eeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcc---c-cceEEEEeccCCCCCCCC
Q 000529 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE---T-FARISGYCEQNDIHSPFV 944 (1441)
Q Consensus 869 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~~~~~~~l 944 (1441)
+.+|+|+||++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.... . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 4699999999999999999999999999999999998653 479999999876432 1 245699999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCC
Q 000529 945 TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV-ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1023 (1441)
Q Consensus 945 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPT 1023 (1441)
|++||+.+...... ....++.+.++++.+ ++.+..++.+ ..||||||||++|||||+.+|++|+|||||
T Consensus 91 t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 91 TVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred cHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99999988654321 122334566778887 4666666553 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1024 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1024 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEGTA 216 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCH
Confidence 999999999999999999877899999999986 57788999999985 899988875
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=343.00 Aligned_cols=208 Identities=25% Similarity=0.354 Sum_probs=177.9
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-------cceEEEEcCCC
Q 000529 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHD 235 (1441)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 235 (1441)
..+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 3457999999999999999999999999999999999999998 9999999998764321 24699999999
Q ss_pred CCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccc
Q 000529 236 NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTM 315 (1441)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1441)
.+++.+||+||+.++....+.. . .+....++++++.+||++..++.
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~ 157 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQGVP----------R------------------------AEREERAAEALELVGLEGWEHKY 157 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCHhHhhCC
Confidence 8888999999999875432210 0 01112356789999999888888
Q ss_pred cccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
+++ |||||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++.. ..+.+|++++|+.+++.+++|++
T Consensus 158 ~~~-----LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tiii~tH~~~~~~~~~d~v 231 (269)
T cd03294 158 PDE-----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA-ELQKTIVFITHDLDEALRLGDRI 231 (269)
T ss_pred ccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEE
Confidence 876 999999999999999999999999999999999999999999998764 33566777889999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 000529 396 ILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1441)
++|++|++++.|+++++.
T Consensus 232 ~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 232 AIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=342.44 Aligned_cols=215 Identities=20% Similarity=0.302 Sum_probs=180.9
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++.++ ++.+|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 478889887652 34699999999999999999999999999999999998653 479999999875
Q ss_pred Ccc------ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000529 923 KQE------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1441)
Q Consensus 923 ~~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 996 (1441)
... ..++.++|++|+..+++.+|+.||+.+...... ..+.+..++.+.++++.++|.+..++.+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 134569999999988889999999987643221 1223334456788999999988777764 469
Q ss_pred CHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEE
Q 000529 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1441)
Q Consensus 997 SgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~ 1075 (1441)
|||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999765 899999999986 57788999999985 899
Q ss_pred EEEcCC
Q 000529 1076 VYVGPL 1081 (1441)
Q Consensus 1076 v~~G~~ 1081 (1441)
++.|+.
T Consensus 223 ~~~g~~ 228 (269)
T PRK11831 223 VAHGSA 228 (269)
T ss_pred EEeCCH
Confidence 999875
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=331.03 Aligned_cols=222 Identities=25% Similarity=0.351 Sum_probs=196.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-------cceEEEEcCCCC
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDN 236 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1441)
...-++|+|++++.||+..|||=||||||||+++|.++.+|+ +|+|.++|.++...+. ++.+++|+|+..
T Consensus 40 ~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 40 LVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred cEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 345689999999999999999999999999999999999998 9999999999876653 367999999999
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccc
Q 000529 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1441)
++|+.||.||..|+.+.+|++. ++.+.++.+.|+..||+..++.++
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~----------------------------------~er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPK----------------------------------AEREERALEALELVGLEGYADKYP 162 (386)
T ss_pred cccchhHhhhhhcceeecCCCH----------------------------------HHHHHHHHHHHHHcCchhhhhcCc
Confidence 9999999999999999988632 223455778899999999999998
Q ss_pred ccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEE
Q 000529 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1441)
Q Consensus 317 g~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vi 396 (1441)
.+ ||||+||||.+||||+.+|+||+||||+|+|||--+.++.+.|.++-.. -+.+|+.++|+.+|++++.|||.
T Consensus 163 ~e-----LSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~-l~KTIvFitHDLdEAlriG~rIa 236 (386)
T COG4175 163 NE-----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK-LKKTIVFITHDLDEALRIGDRIA 236 (386)
T ss_pred cc-----ccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHH-hCCeEEEEecCHHHHHhccceEE
Confidence 77 9999999999999999999999999999999999999999888777554 45667779999999999999999
Q ss_pred EecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhhHHHhh
Q 000529 397 LLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436 (1441)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 436 (1441)
+|.+|+||..|+++|++. .|...-+++|..++
T Consensus 237 imkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 237 IMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred EecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 999999999999999973 46666667777654
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=343.94 Aligned_cols=215 Identities=25% Similarity=0.343 Sum_probs=180.3
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++.++ ++..+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 367888887663 123599999999999999999999999999999999998653 479999999876
Q ss_pred Cc---cccceEEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000529 923 KQ---ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 998 (1441)
.. ...++.+||++|++. .++..||.||+.|..... .......++.++++++.++|.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 43 223467999999863 345689999998864322 2333444566889999999988777764 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~ 1078 (1441)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.+|++++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 46688999999975 899999
Q ss_pred cCC
Q 000529 1079 GPL 1081 (1441)
Q Consensus 1079 G~~ 1081 (1441)
|+.
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 985
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=341.71 Aligned_cols=218 Identities=25% Similarity=0.280 Sum_probs=177.3
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|+++.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhh
Confidence 45677776542 134699999999999999999999999999999999998653 4799999998754
Q ss_pred c------cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000529 924 Q------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRL-----PPEVNSETRKMFIEEVMELVELKPLRQSLVGLPG 992 (1441)
Q Consensus 924 ~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 992 (1441)
. ..+++.++|++|++.+++.+||+||+.+...... .........+++++++++.+++.+..+..+
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 143 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---- 143 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 2 1235679999999988899999999976431100 000112233456888999999987777654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEec
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1441)
Q Consensus 993 ~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~ 1071 (1441)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.||++++|++
T Consensus 144 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 144 -DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 469999999999999999999999999999999999999999999999764 899999999986 46788999999985
Q ss_pred CcEEEEEcCCC
Q 000529 1072 GGREVYVGPLG 1082 (1441)
Q Consensus 1072 gG~~v~~G~~~ 1082 (1441)
|++++.|+..
T Consensus 222 -G~i~~~~~~~ 231 (243)
T TIGR02315 222 -GEIVFDGAPS 231 (243)
T ss_pred -CEEEecCCHH
Confidence 8999888763
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=337.27 Aligned_cols=215 Identities=27% Similarity=0.397 Sum_probs=177.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc----cceEEEEcCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1441)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 45999999999999999999999999999999999999987 9999999998865432 2459999999999999
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1441)
+||+||+.++....+.. . .... . . .....+....++++++.+||++..++.+++
T Consensus 90 ~tv~~~l~~~~~~~~~~-~------~~~~---~---~-----------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (236)
T cd03219 90 LTVLENVMVAAQARTGS-G------LLLA---R---A-----------RREEREARERAEELLERVGLADLADRPAGE-- 143 (236)
T ss_pred CCHHHHHHHHHhhcccc-c------cccc---c---c-----------cccHHHHHHHHHHHHHHcCccchhhCChhh--
Confidence 99999999875432110 0 0000 0 0 000011223467789999999888887766
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~ 400 (1441)
|||||||||+||++|+.+|++++|||||+|||..++..+.+.|+++.. . +.+|+.++|+.+++.+++|+|++|++
T Consensus 144 ---LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 144 ---LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-R-GITVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999998754 3 55677788999999999999999999
Q ss_pred CeEEEEcCHHHHH
Q 000529 401 GQIVYQGPRELVL 413 (1441)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1441)
|++++.|+++++.
T Consensus 219 G~i~~~~~~~~~~ 231 (236)
T cd03219 219 GRVIAEGTPDEVR 231 (236)
T ss_pred CEEEeecCHHHhc
Confidence 9999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=342.19 Aligned_cols=205 Identities=24% Similarity=0.341 Sum_probs=174.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCC-CCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHD-NHIGE 240 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 240 (1441)
..+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 35899999999999999999999999999999999999998 9999999999865332 35799999986 36778
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1441)
+||+|||.|+.+..+.. .++....++++++.+||++..+..+++
T Consensus 97 ~tv~eni~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~~~-- 140 (279)
T PRK13650 97 ATVEDDVAFGLENKGIP----------------------------------HEEMKERVNEALELVGMQDFKEREPAR-- 140 (279)
T ss_pred ccHHHHHHhhHHhCCCC----------------------------------HHHHHHHHHHHHHHCCCHhHhhCCccc--
Confidence 89999999875432210 011123467789999999888888766
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~ 400 (1441)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. ..+++|++++|+.+++ ..+|+|++|++
T Consensus 141 ---LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tilivtH~~~~~-~~~dri~~l~~ 215 (279)
T PRK13650 141 ---LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD-DYQMTVISITHDLDEV-ALSDRVLVMKN 215 (279)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHH-HhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998754 3356677788888888 58999999999
Q ss_pred CeEEEEcCHHHHH
Q 000529 401 GQIVYQGPRELVL 413 (1441)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1441)
|+++..|+++++.
T Consensus 216 G~i~~~g~~~~~~ 228 (279)
T PRK13650 216 GQVESTSTPRELF 228 (279)
T ss_pred CEEEEECCHHHHH
Confidence 9999999998775
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=346.84 Aligned_cols=218 Identities=24% Similarity=0.369 Sum_probs=178.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCC-------CccceEEEEcCCC-C
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-------VPERTAAYISQHD-N 236 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d-~ 236 (1441)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++ .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 45999999999999999999999999999999999999998 99999999987531 1135799999985 2
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc-cccccc
Q 000529 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTM 315 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1441)
.+...||+||+.|+.+..+.. .++....++.+++.+||+ +..++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVS----------------------------------EEDAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCChhhhhCC
Confidence 444679999999875432210 011123467789999997 567777
Q ss_pred cccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
+.+ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. ..+++|++++|+.+++.+++|+|
T Consensus 143 ~~~-----LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~-~~g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 143 PFE-----LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK-EKGLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEE
Confidence 765 999999999999999999999999999999999999999999998754 33567777899999999999999
Q ss_pred EEecCCeEEEEcCHHHHH---HHHHhcCCCCCC
Q 000529 396 ILLSDGQIVYQGPRELVL---EFFESMGFKCPK 425 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~~---~~f~~~G~~~p~ 425 (1441)
++|++|+++++|+++++. +.+...|..+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 999999999999998874 233344554443
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=346.55 Aligned_cols=218 Identities=25% Similarity=0.290 Sum_probs=179.5
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|++++++... ...+.+|+|||++|++||++||+||||||||||+++|+|...+ ..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 67889988874210 0124599999999999999999999999999999999998663 4799999998763
Q ss_pred c-------cccceEEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000529 924 Q-------ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVN 994 (1441)
Q Consensus 924 ~-------~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 994 (1441)
. ...++.+|||+|++. .+...||+||+.|+.... ..+.++.+++++++++.++|. +..++.+ .
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP-----F 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----c
Confidence 1 134567999999863 233479999998875432 233444556789999999996 5566653 4
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCc
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1441)
Q Consensus 995 ~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG 1073 (1441)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++++|+ +|
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~-~G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH-KG 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 69999999999999999999999999999999999999999999999765 899999999986 5778899999998 58
Q ss_pred EEEEEcCC
Q 000529 1074 REVYVGPL 1081 (1441)
Q Consensus 1074 ~~v~~G~~ 1081 (1441)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (290)
T PRK13634 223 TVFLQGTP 230 (290)
T ss_pred EEEEECCH
Confidence 99999985
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=347.54 Aligned_cols=218 Identities=24% Similarity=0.304 Sum_probs=179.7
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|+++.++... .....+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 67889988874210 0123599999999999999999999999999999999998664 4699999886531
Q ss_pred ---------------------------ccccceEEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 000529 924 ---------------------------QETFARISGYCEQND-IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVM 975 (1441)
Q Consensus 924 ---------------------------~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l 975 (1441)
....++.+|||+|++ ..+...||+|++.|+.... ..+.++.++++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 112356799999985 3344579999998875432 234455566789999
Q ss_pred HHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 000529 976 ELVELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1054 (1441)
Q Consensus 976 ~~l~L~-~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 1054 (1441)
+.+||. +..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.+.|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 5666654 4699999999999999999999999999999999999999999999998779999999999
Q ss_pred CcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1055 PSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1055 ~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
++ .+.+.+|++++|++ |++++.|+.
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 86 47789999999975 899999986
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=331.25 Aligned_cols=208 Identities=34% Similarity=0.487 Sum_probs=174.5
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
.++|+++.++ ++.+|+|+|+++++| +++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCcccc
Confidence 4677776552 246999999999999 9999999999999999999998653 48999999987543
Q ss_pred --cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000529 925 --ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1441)
Q Consensus 925 --~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1002 (1441)
...++.++|++|++.+++.+||.||+.+....+. ...++.++.++++++.++|.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHH
Confidence 1235679999999999999999999988655431 222334556889999999988777664 469999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1003 Rv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+.+|++++|++ |++++.|
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999976 599999999986 46678999999985 7888764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=332.02 Aligned_cols=208 Identities=24% Similarity=0.310 Sum_probs=174.2
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|+++.++ +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 46778877652 12469999999999999999999999999999999999865 34799999998754
Q ss_pred cc------ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000529 924 QE------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1441)
Q Consensus 924 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 997 (1441)
.. ..++.++|++|++.+++..|++||+.+....+ ....++..+.++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCC
Confidence 21 13567999999998888899999998865433 1233344456788999999988777654 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEE
Q 000529 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1441)
Q Consensus 998 gGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~ 1075 (1441)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||++||+++ ++.+.+|++++|++ |++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i 215 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHL 215 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999777899999999986 46678999999985 665
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=376.46 Aligned_cols=216 Identities=31% Similarity=0.452 Sum_probs=180.1
Q ss_pred CCceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcC
Q 000529 840 EPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG 919 (1441)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 919 (1441)
....++|+||+|+++.. ++..+|+|+|+.|++|+.+||+|||||||||++++|.+... +.+|+|.+||
T Consensus 347 ~~g~ief~nV~FsYPsR----------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG 414 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSR----------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDG 414 (1228)
T ss_pred cccceEEEEEEecCCCC----------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcC
Confidence 34579999999998754 34579999999999999999999999999999999999766 4589999999
Q ss_pred ccCCc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-------CCccccccccc
Q 000529 920 YPKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV-------ELKPLRQSLVG 989 (1441)
Q Consensus 920 ~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-------~L~~~~~~~vg 989 (1441)
.+++. ..++.++|.|.|+|.++ ..|++||+.|+- ++.+.++ ++++.+.. .|.+-.|+.+|
T Consensus 415 ~di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G~-----~dat~~~----i~~a~k~ana~~fi~~lp~g~~T~vg 484 (1228)
T KOG0055|consen 415 EDIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYGK-----PDATREE----IEEAAKAANAHDFILKLPDGYDTLVG 484 (1228)
T ss_pred ccchhcchHHHHhhcCeeeechhhh-cccHHHHHhcCC-----CcccHHH----HHHHHHHccHHHHHHhhHHhhccccc
Confidence 98754 34677899999999777 479999998752 2333332 33333333 34455678888
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEE
Q 000529 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1069 (1441)
Q Consensus 990 ~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL 1069 (1441)
..++. ||||||||++|||||+++|+|||||||||+||+++...|+++|++.. .|+|.|+++|+.| .+ +.+|++++|
T Consensus 485 e~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tI-rnaD~I~v~ 560 (1228)
T KOG0055|consen 485 ERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TI-RNADKIAVM 560 (1228)
T ss_pred CCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hh-hccCEEEEE
Confidence 77664 99999999999999999999999999999999999999999998875 5999999999987 34 559999999
Q ss_pred ecCcEEEEEcCCC
Q 000529 1070 KRGGREVYVGPLG 1082 (1441)
Q Consensus 1070 ~~gG~~v~~G~~~ 1082 (1441)
++ |++++.|...
T Consensus 561 ~~-G~IvE~G~h~ 572 (1228)
T KOG0055|consen 561 EE-GKIVEQGTHD 572 (1228)
T ss_pred EC-CEEEEecCHH
Confidence 85 8999999863
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=330.67 Aligned_cols=200 Identities=30% Similarity=0.433 Sum_probs=171.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1441)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 35899999999999999999999999999999999999987 9999999998764432 3579999999888889999
Q ss_pred HHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccC
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1441)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 323 (1441)
+||+.++.+..+.. ..+....++.+++.+||++..++.+++
T Consensus 90 ~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (213)
T cd03301 90 YDNIAFGLKLRKVP----------------------------------KDEIDERVREVAELLQIEHLLDRKPKQ----- 130 (213)
T ss_pred HHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCHHHHhCChhh-----
Confidence 99999875432210 001122456789999999888888876
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000529 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1441)
Q Consensus 324 LSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~i 403 (1441)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++.. .+.+|++++|+.+++.+++|+|++|++|++
T Consensus 131 LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR-LGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999987643 356677788999999999999999999999
Q ss_pred EEEc
Q 000529 404 VYQG 407 (1441)
Q Consensus 404 v~~G 407 (1441)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03301 210 QQIG 213 (213)
T ss_pred EecC
Confidence 9876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=334.14 Aligned_cols=217 Identities=24% Similarity=0.282 Sum_probs=172.0
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|+++.+... .....+|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 4677887765310 001369999999999999999999999999999999999865 34799999998764
Q ss_pred c------cccceEEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000529 924 Q------ETFARISGYCEQND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVN 994 (1441)
Q Consensus 924 ~------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 994 (1441)
. ...++.++|++|++ .+.+.+||+||+.+......+. ...+..+..++++++.+++. +..+..+ .
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRYP-----H 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCCc-----h
Confidence 3 13456799999998 4567899999998765433211 11111122235788999995 4556554 4
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCc
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1441)
Q Consensus 995 ~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG 1073 (1441)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 69999999999999999999999999999999999999999999999865 899999999986 46678999999985 7
Q ss_pred EEEEEc
Q 000529 1074 REVYVG 1079 (1441)
Q Consensus 1074 ~~v~~G 1079 (1441)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 887654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=378.29 Aligned_cols=207 Identities=29% Similarity=0.423 Sum_probs=171.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1441)
.+|+|+|++|+|||.++|+|+||||||||+|+|+|+++|. +|+|.+||+++++.+. |+.++||+|++.+ .+.|
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~L-f~gS 562 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFL-FSGS 562 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchh-hcCc
Confidence 6899999999999999999999999999999999999998 9999999999987765 5889999998755 5679
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1441)
|+||+.++... .+.++.+.|+...+. + -.+..++..+||.||+ ++.
T Consensus 563 I~eNi~l~~p~-------------------------~~~e~i~~A~~~ag~------~--~fI~~lP~gy~t~v~E-~G~ 608 (709)
T COG2274 563 IRENIALGNPE-------------------------ATDEEIIEAAQLAGA------H--EFIENLPMGYDTPVGE-GGA 608 (709)
T ss_pred HHHHHhcCCCC-------------------------CCHHHHHHHHHHhCc------H--HHHHhccccccccccc-CCC
Confidence 99999986421 122222222222111 1 1234688899999995 677
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 GLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~ 402 (1441)
+||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|+|+ ++|. ..+.+.||+|++|++|+
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~-IaHR-l~ti~~adrIiVl~~Gk 684 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVII-IAHR-LSTIRSADRIIVLDQGK 684 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEE-EEcc-chHhhhccEEEEccCCc
Confidence 899999999999999999999999999999999999999999998863 3455555 4443 45788999999999999
Q ss_pred EEEEcCHHHHHH
Q 000529 403 IVYQGPRELVLE 414 (1441)
Q Consensus 403 iv~~G~~~~~~~ 414 (1441)
++.+|+++++++
T Consensus 685 iv~~gs~~ell~ 696 (709)
T COG2274 685 IVEQGSHEELLA 696 (709)
T ss_pred eeccCCHHHHHH
Confidence 999999999875
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=354.74 Aligned_cols=207 Identities=22% Similarity=0.330 Sum_probs=179.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-------cceEEEEcCCCC
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDN 236 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1441)
...+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 346899999999999999999999999999999999999998 9999999999865432 247999999999
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccc
Q 000529 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1441)
+++.+||+||+.|+.+..+... .+....++++++.+||++..++.+
T Consensus 117 l~~~~Tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAGINA----------------------------------EERREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred CCCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhcCc
Confidence 9999999999999765432110 011234567899999998888887
Q ss_pred ccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEE
Q 000529 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1441)
Q Consensus 317 g~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vi 396 (1441)
.+ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.. ..+++|++++|+.+++.+++|+|+
T Consensus 163 ~~-----LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~-~~g~TIIivTHd~~~~~~~~Dri~ 236 (400)
T PRK10070 163 DE-----LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA-KHQRTIVFISHDLDEAMRIGDRIA 236 (400)
T ss_pred cc-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH-HCCCeEEEEECCHHHHHHhCCEEE
Confidence 66 999999999999999999999999999999999999999999998754 335667778999999999999999
Q ss_pred EecCCeEEEEcCHHHHH
Q 000529 397 LLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1441)
+|++|++++.|+++++.
T Consensus 237 vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 237 IMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEECCEEEecCCHHHHH
Confidence 99999999999998774
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=344.34 Aligned_cols=218 Identities=24% Similarity=0.337 Sum_probs=179.9
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|+++.++... ...+.+|+|||++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 57889988874110 0113599999999999999999999999999999999998663 4799999998863
Q ss_pred c-------cccceEEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000529 924 Q-------ETFARISGYCEQND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGV 993 (1441)
Q Consensus 924 ~-------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 993 (1441)
. ...++.+||++|++ .+++ .||.|++.|..... ..+.++.++++.++++.++|. +..++. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 12456799999986 3444 69999999875432 234455566789999999996 455554 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCc
Q 000529 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1441)
Q Consensus 994 ~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG 1073 (1441)
..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 469999999999999999999999999999999999999999999999877999999999986 57788999999985 8
Q ss_pred EEEEEcCCC
Q 000529 1074 REVYVGPLG 1082 (1441)
Q Consensus 1074 ~~v~~G~~~ 1082 (1441)
++++.|++.
T Consensus 221 ~i~~~g~~~ 229 (288)
T PRK13643 221 HIISCGTPS 229 (288)
T ss_pred EEEEECCHH
Confidence 999999863
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=334.58 Aligned_cols=205 Identities=22% Similarity=0.368 Sum_probs=175.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc----cceEEEEcCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1441)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 46999999999999999999999999999999999999998 9999999998754332 2469999999989999
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1441)
+||+||+.+.....+.. ..+....++.+++.+||++..++.+++
T Consensus 90 ~tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 133 (232)
T cd03218 90 LTVEENILAVLEIRGLS----------------------------------KKEREEKLEELLEEFHITHLRKSKASS-- 133 (232)
T ss_pred CcHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhhCChhh--
Confidence 99999999864322110 001123456789999999888887766
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~ 400 (1441)
|||||||||+||+|++.+|++|+|||||+|||..++..+.+.|+++.. .+++|+.++|+.+++.+++|+|++|++
T Consensus 134 ---LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~ 208 (232)
T cd03218 134 ---LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD--RGIGVLITDHNVRETLSITDRAYIIYE 208 (232)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998754 356677788999999999999999999
Q ss_pred CeEEEEcCHHHHH
Q 000529 401 GQIVYQGPRELVL 413 (1441)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1441)
|++++.|+.+++.
T Consensus 209 G~i~~~~~~~~~~ 221 (232)
T cd03218 209 GKVLAEGTPEEIA 221 (232)
T ss_pred CeEEEEeCHHHhh
Confidence 9999999988753
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=333.97 Aligned_cols=212 Identities=28% Similarity=0.397 Sum_probs=176.7
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|++++++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcc
Confidence 45677776652 34699999999999999999999999999999999998653 4799999998754
Q ss_pred cc--ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000529 924 QE--TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1441)
Q Consensus 924 ~~--~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1001 (1441)
.. ...+.++|++|++.+++.+|++||+.+....+ ....+...+.++++++.+||.+..++.++ .||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVR-----ELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHH
Confidence 21 22356899999998888899999998765432 12333345567889999999887776644 6999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcC
Q 000529 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1441)
Q Consensus 1002 qRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~ 1080 (1441)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|+++ ++ +.+|++++|++ |++++.|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999975 5899999999986 34 45999999985 89999887
Q ss_pred C
Q 000529 1081 L 1081 (1441)
Q Consensus 1081 ~ 1081 (1441)
.
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 5
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=332.34 Aligned_cols=195 Identities=27% Similarity=0.414 Sum_probs=165.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-------cceEEEEcCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNH 237 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1441)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999999988 9999999998765431 3579999999989
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccc
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1441)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1441)
++.+||+||+.++....+.. . .+....++.+++.+||++..++.++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (218)
T cd03255 94 LPDLTALENVELPLLLAGVP----------K------------------------KERRERAEELLERVGLGDRLNHYPS 139 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhcChh
Confidence 99999999999875433210 0 0011245678999999988888776
Q ss_pred cccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000529 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1441)
Q Consensus 318 ~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vil 397 (1441)
+ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ ..+++|+.++|+.+++. ++|++++
T Consensus 140 ~-----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 140 E-----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNK-EAGTTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred h-----cCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCeEEEEECCHHHHh-hhcEEEE
Confidence 6 999999999999999999999999999999999999999999998754 23566777888888876 9999999
Q ss_pred ecCCeE
Q 000529 398 LSDGQI 403 (1441)
Q Consensus 398 L~~G~i 403 (1441)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=331.22 Aligned_cols=206 Identities=25% Similarity=0.344 Sum_probs=172.7
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
.++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCc
Confidence 4677776652 24699999999999999999999999999999999998653 47999999987632
Q ss_pred -----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000529 925 -----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1441)
Q Consensus 925 -----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 999 (1441)
...++.++|++|++.+++.+|+.||+.+...... ....++.++.++++++.+|+.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 1245679999999998889999999987643111 1233344566889999999988777764 469999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 1000 qrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 999999999999999999999999999999999999999999877899999999986 57788999999985 54
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=331.98 Aligned_cols=201 Identities=23% Similarity=0.332 Sum_probs=169.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-------cceEEEEcCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNH 237 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1441)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|+++|+++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999999987 9999999999865432 2469999999888
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccc
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1441)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1441)
++.+||+||+.+.....+.. . .+....++++++.+||++..++.++
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKK----------P------------------------AEINSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhCChh
Confidence 99999999999865432110 0 0112345678999999988887776
Q ss_pred cccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000529 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1441)
Q Consensus 318 ~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vil 397 (1441)
+ |||||||||+||++++.+|++|+|||||+|||+.++..+.+.|+++.. ..+++|+.++|+.+++.. +|++++
T Consensus 145 ~-----LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 145 E-----LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNR-LQGTAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHh-hCEEEE
Confidence 5 999999999999999999999999999999999999999999998754 335667778888888766 589999
Q ss_pred ecCCeEEEEcCH
Q 000529 398 LSDGQIVYQGPR 409 (1441)
Q Consensus 398 L~~G~iv~~G~~ 409 (1441)
|++|+++..|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999998864
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=347.63 Aligned_cols=218 Identities=24% Similarity=0.341 Sum_probs=179.8
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++.++... ...+.+|+|||++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCEEc
Confidence 488999998874210 0124599999999999999999999999999999999998763 479999999765
Q ss_pred Cc-------------------cccceEEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc
Q 000529 923 KQ-------------------ETFARISGYCEQND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981 (1441)
Q Consensus 923 ~~-------------------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~ 981 (1441)
.. ...++.+|||+|++ .+++ .||+||+.|+.... ..+.++..+++.++++.+||.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 13456799999986 3454 59999998865322 223444556788999999996
Q ss_pred -ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHH
Q 000529 982 -PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1060 (1441)
Q Consensus 982 -~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~ 1060 (1441)
+..+.. +..||||||||++|||||+.+|+||+|||||+|||+.++..+++.|+++.++|+|||++||+++ .+.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455554 3469999999999999999999999999999999999999999999999877999999999986 467
Q ss_pred HhhCeEEEEecCcEEEEEcCC
Q 000529 1061 EAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1061 ~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
+.+|++++|++ |++++.|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 88999999985 899999986
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=345.23 Aligned_cols=205 Identities=25% Similarity=0.370 Sum_probs=173.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCC----------------------
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF---------------------- 222 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~---------------------- 222 (1441)
.++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+....
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999999998 89999998764210
Q ss_pred -----CccceEEEEcCCC-CCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhH
Q 000529 223 -----VPERTAAYISQHD-NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEAN 296 (1441)
Q Consensus 223 -----~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~ 296 (1441)
..++.++||+|++ ..+...||+|||.|+....+.. .++..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~----------------------------------~~~~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVS----------------------------------KEEAK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCC----------------------------------HHHHH
Confidence 1135799999985 3555689999999976543210 01122
Q ss_pred HHHHHHHHHcCCc-cccccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCC
Q 000529 297 VITDYYLKVLGLD-ICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSG 375 (1441)
Q Consensus 297 ~~~~~~l~~lgL~-~~~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~ 375 (1441)
.+++.+++.+||+ +..++.+.+ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. .+
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~~~~-----LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~--~g 215 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRSPFE-----LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK--QG 215 (305)
T ss_pred HHHHHHHHHcCCChhhhhCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CC
Confidence 3467789999996 677877765 999999999999999999999999999999999999999999998753 35
Q ss_pred eEEEEEecChhhHHhhcCeEEEecCCeEEEEcCHHHHH
Q 000529 376 TAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 376 t~vi~i~q~~~~~~~l~D~vilL~~G~iv~~G~~~~~~ 413 (1441)
.+|++++|+.+++.+++|+|++|++|+++++|+++++.
T Consensus 216 ~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 216 KTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred CEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 67778999999999999999999999999999998875
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=335.99 Aligned_cols=214 Identities=24% Similarity=0.305 Sum_probs=177.3
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc---eEEEEEEEcCc
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISGY 920 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~ 920 (1441)
++++|+++.++ +..+|+|+|++|++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56778877653 246999999999999999999999999999999999976531 12799999998
Q ss_pred cCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCC
Q 000529 921 PKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK----PLRQSLVGLP 991 (1441)
Q Consensus 921 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~~ 991 (1441)
+... ...++.++|++|++.+++ .|++||+.+....+. ....++.++.++++++.+||. +..++.
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 123567999999988888 999999988754431 122344456688999999997 555554
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEec
Q 000529 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1441)
Q Consensus 992 ~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~ 1071 (1441)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.+|++++|++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 346999999999999999999999999999999999999999999999976 489999999986 57788999999985
Q ss_pred CcEEEEEcCC
Q 000529 1072 GGREVYVGPL 1081 (1441)
Q Consensus 1072 gG~~v~~G~~ 1081 (1441)
|++++.|+.
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 899999875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=336.20 Aligned_cols=214 Identities=27% Similarity=0.367 Sum_probs=179.7
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +..|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 66778776652 3469999999999999999999999999999999999865 34799999998764
Q ss_pred cc----ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000529 924 QE----TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1441)
Q Consensus 924 ~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 999 (1441)
.. ..++.++|++|++.+++.+||.||+.+...++. ....++.+..++++++.+++.+..+..+ +.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCHH
Confidence 31 134569999999988888999999987643321 1223344566889999999987766654 469999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1000 qrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
||||++|||||+.+|++|+|||||+|||+.++..+.+.+++++++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeC
Confidence 999999999999999999999999999999999999999999877999999999985 57788999999985 8999988
Q ss_pred CC
Q 000529 1080 PL 1081 (1441)
Q Consensus 1080 ~~ 1081 (1441)
+.
T Consensus 220 ~~ 221 (241)
T PRK10895 220 TP 221 (241)
T ss_pred CH
Confidence 76
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=345.68 Aligned_cols=205 Identities=26% Similarity=0.381 Sum_probs=179.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC--ccceEEEEcCCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1441)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999998 999999999876432 2357999999999999999
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1441)
|+||+.+.++..+... ++....++.+++.+||++..|+.+++
T Consensus 92 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~---- 133 (301)
T TIGR03522 92 VREYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKIGQ---- 133 (301)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCchhh----
Confidence 9999998765543210 01122457789999999999988876
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 GLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~ 402 (1441)
|||||||||++|+||+++|++|+|||||+|||+.++..+.+.++++. . +++|+.++|..+++.++||+|++|++|+
T Consensus 134 -LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~--~-~~tiii~sH~l~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 134 -LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--K-DKTIILSTHIMQEVEAICDRVIIINKGK 209 (301)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc--C-CCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999863 3 4677888999999999999999999999
Q ss_pred EEEEcCHHHHHH
Q 000529 403 IVYQGPRELVLE 414 (1441)
Q Consensus 403 iv~~G~~~~~~~ 414 (1441)
+++.|+.+++..
T Consensus 210 i~~~g~~~~~~~ 221 (301)
T TIGR03522 210 IVADKKLDELSA 221 (301)
T ss_pred EEEeCCHHHHHH
Confidence 999999998764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=331.82 Aligned_cols=199 Identities=27% Similarity=0.422 Sum_probs=164.2
Q ss_pred eeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCccccceEEEEeccCCCCC--CCCCH
Q 000529 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHS--PFVTV 946 (1441)
Q Consensus 869 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~lTv 946 (1441)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.. ..++.++|++|++.+. +..||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 4699999999999999999999999999999999998653 4799999998653 2456799999998763 33799
Q ss_pred HHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCC
Q 000529 947 YESLFYSAWLRLPP-EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025 (1441)
Q Consensus 947 ~E~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsg 1025 (1441)
+||+.+........ ....+..++.++++++.+++.+..++.+ ..||||||||++||+||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 99998754321100 0112233456889999999987777664 36999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1026 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1026 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999999877899999999986 57788999999974 4 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=342.73 Aligned_cols=216 Identities=26% Similarity=0.386 Sum_probs=181.3
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.++ +++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 578999988763 12469999999999999999999999999999999999865 3579999999876
Q ss_pred Cc-----cccceEEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000529 923 KQ-----ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1441)
Q Consensus 923 ~~-----~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 996 (1441)
.. ..+++.+||++|++. .....|++||+.+..... ..+.++..++++++++.+||.+..++.+ +.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccC
Confidence 31 234567999999874 234579999998864322 2234444567899999999988877764 469
Q ss_pred CHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEE
Q 000529 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1441)
Q Consensus 997 SgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~ 1075 (1441)
|||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.||++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 899999999986 46678999999985 899
Q ss_pred EEEcCCC
Q 000529 1076 VYVGPLG 1082 (1441)
Q Consensus 1076 v~~G~~~ 1082 (1441)
++.|+..
T Consensus 221 ~~~g~~~ 227 (283)
T PRK13636 221 ILQGNPK 227 (283)
T ss_pred EEeCCHH
Confidence 9999863
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=337.43 Aligned_cols=215 Identities=20% Similarity=0.259 Sum_probs=180.0
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 478888887753 34699999999999999999999999999999999998653 479999999865
Q ss_pred Cc----------------cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-c
Q 000529 923 KQ----------------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-Q 985 (1441)
Q Consensus 923 ~~----------------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-~ 985 (1441)
.. ..+++.++|++|++.+++.+|++||+.+...... .......++++.++++.+|+.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 1235679999999999999999999987542111 123344556788999999997753 5
Q ss_pred ccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCe
Q 000529 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1065 (1441)
Q Consensus 986 ~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~ 1065 (1441)
.. +..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||+
T Consensus 148 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 44 3469999999999999999999999999999999999999999999999877999999999986 46678999
Q ss_pred EEEEecCcEEEEEcCC
Q 000529 1066 LFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1066 vllL~~gG~~v~~G~~ 1081 (1441)
+++|++ |++++.|+.
T Consensus 222 i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 222 VIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999985 899998875
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=343.02 Aligned_cols=216 Identities=23% Similarity=0.306 Sum_probs=181.6
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++.++.. +.+.+|+|||++|++||++||+||||||||||+++|+|..++ ..|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 37788998876421 123599999999999999999999999999999999998663 479999999886
Q ss_pred Cc---cccceEEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000529 923 KQ---ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 998 (1441)
.. ...++.+||++|++. .++..||+||+.|..... ..+.++.+++++++++.+||.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234567999999973 567789999998875432 2344455567899999999998777764 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ .+ ..+|++++|++ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999986 34 67999999975 89999
Q ss_pred EcCC
Q 000529 1078 VGPL 1081 (1441)
Q Consensus 1078 ~G~~ 1081 (1441)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13650 221 TSTP 224 (279)
T ss_pred ECCH
Confidence 9986
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=346.44 Aligned_cols=230 Identities=21% Similarity=0.254 Sum_probs=184.8
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
-++++|++.+++............+...+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 478899887775321000000011235799999999999999999999999999999999998763 479999999876
Q ss_pred Ccc------ccceEEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000529 923 KQE------TFARISGYCEQND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGV 993 (1441)
Q Consensus 923 ~~~------~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 993 (1441)
... .+++.++||+|++ .++|.+||.|++.+......+ ..+.++.++++.++++.++|. +..++. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 431 2356799999997 578899999999886543211 234555667788999999995 345555 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 994 ~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
..|||||||||+|||||+.+|++|++||||+|||+.++..+++.|+++.++ |.|||++|||++ .+.+.+|++++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 469999999999999999999999999999999999999999999999765 899999999986 46778999999985
Q ss_pred cEEEEEcCCC
Q 000529 1073 GREVYVGPLG 1082 (1441)
Q Consensus 1073 G~~v~~G~~~ 1082 (1441)
|++++.|+..
T Consensus 238 G~ive~g~~~ 247 (331)
T PRK15079 238 GHAVELGTYD 247 (331)
T ss_pred CEEEEEcCHH
Confidence 8999999863
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=343.48 Aligned_cols=218 Identities=22% Similarity=0.320 Sum_probs=179.4
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|...+ ..|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 367889988774210 0124699999999999999999999999999999999998663 479999999876
Q ss_pred Cc-------cccceEEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000529 923 KQ-------ETFARISGYCEQND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPG 992 (1441)
Q Consensus 923 ~~-------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~ 992 (1441)
.. ...++.+|||+|++ .+++ .||.||+.|..... ..+.++..++++++++.+||. +..++.
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~----- 142 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS----- 142 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 32 13456799999986 3444 59999998865332 233445566788999999996 566655
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHhhCeEEEEec
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1441)
Q Consensus 993 ~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~vllL~~ 1071 (1441)
+..||||||||++|||||+.+|+||+|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|++
T Consensus 143 ~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~ 221 (286)
T PRK13646 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE 221 (286)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 346999999999999999999999999999999999999999999999976 4899999999986 47788999999985
Q ss_pred CcEEEEEcCC
Q 000529 1072 GGREVYVGPL 1081 (1441)
Q Consensus 1072 gG~~v~~G~~ 1081 (1441)
|++++.|+.
T Consensus 222 -G~i~~~g~~ 230 (286)
T PRK13646 222 -GSIVSQTSP 230 (286)
T ss_pred -CEEEEECCH
Confidence 899999985
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=337.81 Aligned_cols=207 Identities=23% Similarity=0.364 Sum_probs=175.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc------cceEEEEcCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDNHI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1441)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 35899999999999999999999999999999999999987 9999999998764321 35699999998888
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
+.+||.||+.++...... ... .+....++.+++.+||++..++.+++
T Consensus 97 ~~~tv~enl~~~~~~~~~---------~~~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~ 143 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQ---------LPA------------------------PLLHSTVMMKLEAVGLRGAAKLMPSE 143 (269)
T ss_pred CCCCHHHHHHHHHHHccC---------CCH------------------------HHHHHHHHHHHHHcCChhhhhCChhh
Confidence 999999999886432100 000 00112356688999999888888776
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. ..+++|++++|+.+++.+++|+|++|
T Consensus 144 -----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tiiivsH~~~~~~~~~d~v~~l 217 (269)
T PRK11831 144 -----LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNS-ALGVTCVVVSHDVPEVLSIADHAYIV 217 (269)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCcEEEEEecCHHHHHHhhCEEEEE
Confidence 999999999999999999999999999999999999999999998754 33567777889999999999999999
Q ss_pred cCCeEEEEcCHHHHH
Q 000529 399 SDGQIVYQGPRELVL 413 (1441)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1441)
++|++++.|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 218 ADKKIVAHGSAQALQ 232 (269)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=330.49 Aligned_cols=211 Identities=24% Similarity=0.319 Sum_probs=172.2
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|+++.++.. .+.+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhh
Confidence 4577887765311 0124699999999999999999999999999999999998653 4799999998754
Q ss_pred cc---c---cc-eEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000529 924 QE---T---FA-RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1441)
Q Consensus 924 ~~---~---~~-~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 996 (1441)
.. . ++ +.++|++|++.+++.+|++||+.+....+. ....+..+.+.++++.+|+.+..++.+ ..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 21 1 12 569999999988888999999988654321 222333456788999999987777664 469
Q ss_pred CHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEE
Q 000529 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1441)
Q Consensus 997 SgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~ 1075 (1441)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ +.+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999999764 899999999986 34 55899999985 676
Q ss_pred E
Q 000529 1076 V 1076 (1441)
Q Consensus 1076 v 1076 (1441)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 4
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=350.99 Aligned_cols=208 Identities=24% Similarity=0.305 Sum_probs=179.5
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCe----eCCCCCc-------cceEEEE
Q 000529 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGH----NMDEFVP-------ERTAAYI 231 (1441)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~----~~~~~~~-------~~~~~yv 231 (1441)
....+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+ ++..... ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 4567999999999999999999999999999999999999998 999999996 3333221 2469999
Q ss_pred cCCCCCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccc
Q 000529 232 SQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDIC 311 (1441)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1441)
+|++.+++.+||+||+.|+....+... .+....++++++.+||++.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchh
Confidence 999999999999999999865433210 1112346778999999998
Q ss_pred cccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhh
Q 000529 312 ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL 391 (1441)
Q Consensus 312 ~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l 391 (1441)
.|+.+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.. ..+++++.++|+.+++.++
T Consensus 158 ~~~~~~~-----LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~-~~~~TII~iTHdl~e~~~l 231 (382)
T TIGR03415 158 ADKKPGE-----LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQA-KLNKTIIFVSHDLDEALKI 231 (382)
T ss_pred hcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 8888876 999999999999999999999999999999999999999999998754 3356777789999999999
Q ss_pred cCeEEEecCCeEEEEcCHHHHH
Q 000529 392 FDDIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 392 ~D~vilL~~G~iv~~G~~~~~~ 413 (1441)
+|+|++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=331.74 Aligned_cols=203 Identities=30% Similarity=0.422 Sum_probs=174.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC--ccceEEEEcCCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1441)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 46999999999999999999999999999999999999998 999999999875421 2356999999988888999
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1441)
|+||+.+..+..+... .+....++++++.+||++..++.+++
T Consensus 92 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~---- 133 (220)
T cd03263 92 VREHLRFYARLKGLPK----------------------------------SEIKEEVELLLRVLGLTDKANKRART---- 133 (220)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhChhhh----
Confidence 9999998654432100 00112356789999999888888766
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 GLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~ 402 (1441)
|||||||||+||++++.+|++|+|||||+|||+.++..+.+.|+++.. + .+|+.++|+.+++.+++|++++|++|+
T Consensus 134 -LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 134 -LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999999999998642 3 677778899999999999999999999
Q ss_pred EEEEcCHHHH
Q 000529 403 IVYQGPRELV 412 (1441)
Q Consensus 403 iv~~G~~~~~ 412 (1441)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=332.14 Aligned_cols=195 Identities=24% Similarity=0.378 Sum_probs=166.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC------ccceEEEEcCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1441)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 35999999999999999999999999999999999999987 999999999875432 135799999999889
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
+.+||+||+.++.+..+.. . .+....++++++.+||++..++.+++
T Consensus 93 ~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 138 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVP----------P------------------------RDANERVSAALEKVGLEGKAHALPMQ 138 (216)
T ss_pred ccccHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCChhh
Confidence 9999999999875432210 0 01122456789999999888888765
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. . +.+|+.++|+.+++.+++|++++|
T Consensus 139 -----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l 211 (216)
T TIGR00960 139 -----LSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-R-GTTVLVATHDINLVETYRHRTLTL 211 (216)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998743 3 566777899999999999999999
Q ss_pred cCCeE
Q 000529 399 SDGQI 403 (1441)
Q Consensus 399 ~~G~i 403 (1441)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99974
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=336.84 Aligned_cols=206 Identities=22% Similarity=0.281 Sum_probs=176.0
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++++. ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEH
Confidence 488999988763 24699999999999999999999999999999999998653 479999998765
Q ss_pred CccccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000529 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1441)
Q Consensus 923 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1002 (1441)
. ..++.++|++|++.+++.+||+||+.+... . ..++.+.++++.++|.+..+..+ ..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 3 245679999999988888999999987421 0 12345788999999988777664 469999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1003 Rv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ .+.+.+|++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999986 46778999999985 899988775
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=345.08 Aligned_cols=214 Identities=26% Similarity=0.436 Sum_probs=180.5
Q ss_pred CCceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcC
Q 000529 840 EPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG 919 (1441)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 919 (1441)
.+..++.+|++|.++. ++++++|+|+++++|+.+||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 3556777799988752 33799999999999999999999999999999999998774 589999999
Q ss_pred ccCC---ccccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccc------ccccC
Q 000529 920 YPKK---QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ------SLVGL 990 (1441)
Q Consensus 920 ~~~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~------~~vg~ 990 (1441)
.+.. ...++++++||+|++.+++ -|++||+.++. .+.+ ++.+.++++..+|.+..+ +.+|+
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8764 3568899999999998886 59999998752 1222 334678888888877654 44554
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+.++|||||+|||++||||+++++++++||||++||.++++.|++.|.++++ ++||+++||++. ....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 3568999999999999999999999999999999999999999999999986 599999999974 567789999998
Q ss_pred cCcEEEEEcCCC
Q 000529 1071 RGGREVYVGPLG 1082 (1441)
Q Consensus 1071 ~gG~~v~~G~~~ 1082 (1441)
+ |+++..|...
T Consensus 529 ~-G~l~~~g~~~ 539 (559)
T COG4988 529 N-GRLVEQGTHE 539 (559)
T ss_pred C-CceeccCCHH
Confidence 5 8999999863
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=329.03 Aligned_cols=197 Identities=25% Similarity=0.353 Sum_probs=170.5
Q ss_pred eeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCccccceEEEEeccCCCCCCCCCHHH
Q 000529 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948 (1441)
Q Consensus 869 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 948 (1441)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... .+.++|++|++.+++.+|++|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 469999999999999999999999999999999999865 35899999998764322 256899999998888899999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCH
Q 000529 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028 (1441)
Q Consensus 949 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~ 1028 (1441)
|+.+....+. .. +..+.++++.+|+.+..+..+ ..||||||||++|||||+.+|++|+|||||+|||+
T Consensus 90 ~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 90 NLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred HHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 9987654331 11 234678999999988777664 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCC
Q 000529 1029 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1029 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1082 (1441)
.++..+++.|++++++|+|||++||++. ++.+.+|++++|++ |++++.|++.
T Consensus 158 ~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 158 IGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 9999999999999877999999999986 57788999999985 8999999874
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=329.57 Aligned_cols=198 Identities=31% Similarity=0.459 Sum_probs=169.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC--ccceEEEEcCCCCCCCCCCH
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMTV 243 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1441)
++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999999998 999999999876421 23579999999988898999
Q ss_pred HHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccC
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1441)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 323 (1441)
+||+.+.....+.. ..+....++++++.+||++..++.+++
T Consensus 96 ~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 136 (218)
T cd03266 96 RENLEYFAGLYGLK----------------------------------GDELTARLEELADRLGMEELLDRRVGG----- 136 (218)
T ss_pred HHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCHHHHhhhhhh-----
Confidence 99998865432210 001123457789999999888887766
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000529 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1441)
Q Consensus 324 LSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~i 403 (1441)
||||||||++||+|++.+|++|+|||||+|||+.++..+.+.|+++.. .+.+|+.++|+.+++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA--LGKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998743 356677788999999999999999999999
Q ss_pred EEEc
Q 000529 404 VYQG 407 (1441)
Q Consensus 404 v~~G 407 (1441)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=340.92 Aligned_cols=203 Identities=26% Similarity=0.331 Sum_probs=173.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCC-CCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN-HIGEM 241 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1441)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.+
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 5899999999999999999999999999999999999998 9999999998865432 357999999863 45678
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1441)
||+||+.|+....+.. ..+....++.+++.+||.+..++.+++
T Consensus 96 tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~~~--- 138 (274)
T PRK13647 96 TVWDDVAFGPVNMGLD----------------------------------KDEVERRVEEALKAVRMWDFRDKPPYH--- 138 (274)
T ss_pred cHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCHHHhcCChhh---
Confidence 9999999865432110 011123467789999999888888876
Q ss_pred cCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000529 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1441)
Q Consensus 322 rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G 401 (1441)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|++++. . +.+|+.++|+.+++.++||+|++|++|
T Consensus 139 --LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 139 --LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-Q-GKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999998754 3 567777899999999999999999999
Q ss_pred eEEEEcCHHHH
Q 000529 402 QIVYQGPRELV 412 (1441)
Q Consensus 402 ~iv~~G~~~~~ 412 (1441)
++++.|+++++
T Consensus 215 ~i~~~g~~~~~ 225 (274)
T PRK13647 215 RVLAEGDKSLL 225 (274)
T ss_pred EEEEECCHHHh
Confidence 99999998754
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=329.80 Aligned_cols=192 Identities=26% Similarity=0.368 Sum_probs=162.5
Q ss_pred eeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc---cccceEEEEeccCCC-CCCCC
Q 000529 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDI-HSPFV 944 (1441)
Q Consensus 869 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~l 944 (1441)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 569999999999999999999999999999999999865 347999999987542 224567999999974 35678
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCC
Q 000529 945 TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1024 (1441)
Q Consensus 945 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTs 1024 (1441)
|++||+.+..... .......++.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998765432 1223334456788999999987777664 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEec
Q 000529 1025 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1441)
Q Consensus 1025 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~ 1071 (1441)
|||+.++..+++.|++++++|+|||++||++. ++...+|++++|++
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~ 209 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLED 209 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 99999999999999999877999999999986 56677999999986
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=334.15 Aligned_cols=213 Identities=23% Similarity=0.327 Sum_probs=177.1
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEec
Confidence 377888887652 24699999999999999999999999999999999998653 479999999876
Q ss_pred Ccc----ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCcCC
Q 000529 923 KQE----TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV-ELKPLRQSLVGLPGVNGLS 997 (1441)
Q Consensus 923 ~~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LS 997 (1441)
... ..++.++|++|+..+++.+||.||+.+..... ..+..++.++++++.+ ++.+..+.. +..||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 432 13457999999998898899999998764221 1122334567778877 476555554 34699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 998 gGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999999877999999999986 57889999999985 89999
Q ss_pred EcCCC
Q 000529 1078 VGPLG 1082 (1441)
Q Consensus 1078 ~G~~~ 1082 (1441)
.|+..
T Consensus 218 ~~~~~ 222 (237)
T PRK11614 218 EDTGD 222 (237)
T ss_pred eCCHH
Confidence 99863
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=340.56 Aligned_cols=206 Identities=20% Similarity=0.310 Sum_probs=173.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC-------ccceEEEEcCCC-C
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-------PERTAAYISQHD-N 236 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d-~ 236 (1441)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 45999999999999999999999999999999999999998 999999999885421 245799999985 2
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc-cccccc
Q 000529 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTM 315 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1441)
.+...||.||+.|+....+.. ..+....++++++.+||+ ...++.
T Consensus 97 ~l~~~tv~e~i~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~ 142 (286)
T PRK13646 97 QLFEDTVEREIIFGPKNFKMN----------------------------------LDEVKNYAHRLLMDLGFSRDVMSQS 142 (286)
T ss_pred ccchhhHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhhhCC
Confidence 333469999999875432110 011123467789999997 677777
Q ss_pred cccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
+.+ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. ..+++|++++|+.+++.+++|+|
T Consensus 143 ~~~-----LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 143 PFQ-----MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT-DENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred ccc-----CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHHhCCEE
Confidence 665 999999999999999999999999999999999999999999998754 34677778899999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 000529 396 ILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1441)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 217 IVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998764
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=351.70 Aligned_cols=209 Identities=26% Similarity=0.428 Sum_probs=178.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1441)
+++|+|+|+.+++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 46999999999999999999999999999999999999998 9999999999876432 46799999999888999
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1441)
||+||+.++..-... +.. . ...+...+++++++.+||.+..++.+.+
T Consensus 93 tv~e~v~~~~~~~~~--~~~---~-------------------------~~~~~~~~v~~~le~vgl~~~~~~~~~~--- 139 (402)
T PRK09536 93 DVRQVVEMGRTPHRS--RFD---T-------------------------WTETDRAAVERAMERTGVAQFADRPVTS--- 139 (402)
T ss_pred CHHHHHHhccchhcc--ccc---C-------------------------CCHHHHHHHHHHHHHcCCchhhcCChhh---
Confidence 999999986421100 000 0 0011224567899999999988888766
Q ss_pred cCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000529 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1441)
Q Consensus 322 rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G 401 (1441)
|||||||||.|||||+.+|++|+|||||+|||+.++.++.+.|+++++ . +++|++++|+.+++.++||++++|++|
T Consensus 140 --LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~-g~TIIivsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 140 --LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-D-GKTAVAAIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999864 3 557777899999999999999999999
Q ss_pred eEEEEcCHHHHH
Q 000529 402 QIVYQGPRELVL 413 (1441)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1441)
++++.|+++++.
T Consensus 216 ~iv~~G~~~ev~ 227 (402)
T PRK09536 216 RVRAAGPPADVL 227 (402)
T ss_pred EEEEecCHHHHh
Confidence 999999999864
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=330.76 Aligned_cols=203 Identities=25% Similarity=0.400 Sum_probs=171.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc----cceEEEEcCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1441)
+++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 36999999999999999999999999999999999999998 9999999998765432 3569999999989999
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHc-CCccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVL-GLDICADTMVGDE 319 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 319 (1441)
+||+||+.++....+. . +....++.+++.+ ++++..++.+++
T Consensus 90 ~t~~~~l~~~~~~~~~--~----------------------------------~~~~~~~~~l~~~~~l~~~~~~~~~~- 132 (222)
T cd03224 90 LTVEENLLLGAYARRR--A----------------------------------KRKARLERVYELFPRLKERRKQLAGT- 132 (222)
T ss_pred CcHHHHHHHHhhhcCc--h----------------------------------hHHHHHHHHHHHHHhhhhhhhCchhh-
Confidence 9999999986543210 0 0011234566777 577777777765
Q ss_pred cccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000529 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1441)
Q Consensus 320 ~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~ 399 (1441)
|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.. .+++|++++|+.+++.+++|+|++|+
T Consensus 133 ----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (222)
T cd03224 133 ----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD--EGVTILLVEQNARFALEIADRAYVLE 206 (222)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhccEEEEee
Confidence 999999999999999999999999999999999999999999998754 35677778899999999999999999
Q ss_pred CCeEEEEcCHHHHH
Q 000529 400 DGQIVYQGPRELVL 413 (1441)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1441)
+|++++.|+.+++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (222)
T cd03224 207 RGRVVLEGTAAELL 220 (222)
T ss_pred CCeEEEeCCHHHHh
Confidence 99999999987753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=334.12 Aligned_cols=206 Identities=28% Similarity=0.427 Sum_probs=174.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1441)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 46999999999999999999999999999999999999987 9999999998765332 35799999999899999
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc--ccccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI--CADTMVGDE 319 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~~ 319 (1441)
||+||+.++.+..+.. ..+....++++++.+||++ ..++.+.+
T Consensus 91 tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~l~l~~~~~~~~~~~~- 135 (242)
T cd03295 91 TVEENIALVPKLLKWP----------------------------------KEKIRERADELLALVGLDPAEFADRYPHE- 135 (242)
T ss_pred cHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCCcHHHHhcChhh-
Confidence 9999999865432210 0011223567899999985 66666655
Q ss_pred cccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000529 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1441)
Q Consensus 320 ~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~ 399 (1441)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. ..+++|++++|+.+++.+++|+|++|+
T Consensus 136 ----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~g~tvii~sH~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 136 ----LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQ-ELGKTIVFVTHDIDEAFRLADRIAIMK 210 (242)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999998754 335667778888899999999999999
Q ss_pred CCeEEEEcCHHHHH
Q 000529 400 DGQIVYQGPRELVL 413 (1441)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1441)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999987763
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=341.86 Aligned_cols=219 Identities=23% Similarity=0.289 Sum_probs=179.3
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.+.... ...+.+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 367788887663110 0124699999999999999999999999999999999998763 589999999875
Q ss_pred Cc-------cccceEEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000529 923 KQ-------ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGV 993 (1441)
Q Consensus 923 ~~-------~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 993 (1441)
.. ...++.+||++|++. .+..+||.||+.|..... ....++..++++++++.+||. +..++.++
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---- 144 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPF---- 144 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcc----
Confidence 32 123457999999863 233579999998765432 123445556788999999997 56676644
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCc
Q 000529 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1441)
Q Consensus 994 ~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG 1073 (1441)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |
T Consensus 145 -~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G 221 (287)
T PRK13641 145 -ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-G 221 (287)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999999877999999999986 57789999999985 8
Q ss_pred EEEEEcCC
Q 000529 1074 REVYVGPL 1081 (1441)
Q Consensus 1074 ~~v~~G~~ 1081 (1441)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (287)
T PRK13641 222 KLIKHASP 229 (287)
T ss_pred EEEEeCCH
Confidence 99999985
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=336.67 Aligned_cols=218 Identities=22% Similarity=0.257 Sum_probs=179.5
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 377888887652 3469999999999999999999999999999999999865 3579999999876
Q ss_pred Ccc---c-cceEEEEeccCCCCCCCCCHHHHHHHHHHhcCC----------C--CCCHHHHHHHHHHHHHHcCCcccccc
Q 000529 923 KQE---T-FARISGYCEQNDIHSPFVTVYESLFYSAWLRLP----------P--EVNSETRKMFIEEVMELVELKPLRQS 986 (1441)
Q Consensus 923 ~~~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~----------~--~~~~~~~~~~v~~~l~~l~L~~~~~~ 986 (1441)
... . .+..++|++|++.+++.+||+||+.+....... . .....+..+.++++++.+|+.+..++
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 233489999999999999999999886432110 0 00111233567888999999877776
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCe
Q 000529 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 1065 (1441)
Q Consensus 987 ~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~ 1065 (1441)
.+ ..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 64 469999999999999999999999999999999999999999999999875 899999999986 57788999
Q ss_pred EEEEecCcEEEEEcCCC
Q 000529 1066 LFLMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1066 vllL~~gG~~v~~G~~~ 1082 (1441)
+++|++ |++++.|+..
T Consensus 224 i~~l~~-g~i~~~~~~~ 239 (255)
T PRK11300 224 IYVVNQ-GTPLANGTPE 239 (255)
T ss_pred EEEEEC-CeEEecCCHH
Confidence 999985 8999998863
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=334.74 Aligned_cols=214 Identities=29% Similarity=0.398 Sum_probs=175.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC------ccceEEEEcCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1441)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 46999999999999999999999999999999999999987 999999999876543 135799999999889
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
+.+||+||+.++..... . . .... .+. ...+....++.+++.+||.+..++.+++
T Consensus 91 ~~~tv~~~l~~~~~~~~-~-~---~~~~------~~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (241)
T cd03256 91 ERLSVLENVLSGRLGRR-S-T---WRSL------FGL---------------FPKEEKQRALAALERVGLLDKAYQRADQ 144 (241)
T ss_pred ccCcHHHHHHhhhcccc-h-h---hhhh------ccc---------------CcHHHHHHHHHHHHHcCChhhhCCCccc
Confidence 99999999988643110 0 0 0000 000 0001123456789999998877777765
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++. ..+.+|++++|+.+++.+++|++++|
T Consensus 145 -----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 145 -----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINR-EEGITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998754 33566777889999999999999999
Q ss_pred cCCeEEEEcCHHHHH
Q 000529 399 SDGQIVYQGPRELVL 413 (1441)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1441)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=333.33 Aligned_cols=218 Identities=22% Similarity=0.249 Sum_probs=175.3
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
+++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 68 (243)
T TIGR01978 2 KIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68 (243)
T ss_pred eEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCC
Confidence 5677776652 346999999999999999999999999999999999974111357999999987643
Q ss_pred c---cc-ceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCC----CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCc
Q 000529 925 E---TF-ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP----EVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNG 995 (1441)
Q Consensus 925 ~---~~-~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~----~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~ 995 (1441)
. .. +..++|++|++.+++.+|++|++.+........ ....++..+.++++++.++|. +..++.++ ..
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~ 144 (243)
T TIGR01978 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EG 144 (243)
T ss_pred CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cC
Confidence 1 12 234899999999999999999998764322110 112233345688999999997 45555432 24
Q ss_pred CCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHh-hCeEEEEecCcE
Q 000529 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGGR 1074 (1441)
Q Consensus 996 LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~-~D~vllL~~gG~ 1074 (1441)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++ |+
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~ 222 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GR 222 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999877899999999986 46566 799999984 89
Q ss_pred EEEEcCC
Q 000529 1075 EVYVGPL 1081 (1441)
Q Consensus 1075 ~v~~G~~ 1081 (1441)
+++.|+.
T Consensus 223 i~~~g~~ 229 (243)
T TIGR01978 223 IVKSGDV 229 (243)
T ss_pred EEEecCH
Confidence 9999875
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=328.29 Aligned_cols=198 Identities=28% Similarity=0.415 Sum_probs=169.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCccceEEEEcCCCCCCCCCCHH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1441)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 45999999999999999999999999999999999999987 9999999988754 2346799999999888899999
Q ss_pred HHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCC
Q 000529 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1441)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 324 (1441)
||+.+.....+.. . .+....++++++.+||++..++.+++ |
T Consensus 89 e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~-----L 129 (210)
T cd03269 89 DQLVYLAQLKGLK----------K------------------------EEARRRIDEWLERLELSEYANKRVEE-----L 129 (210)
T ss_pred HHHHHHHHHcCCC----------h------------------------HHHHHHHHHHHHHcCChHHHhCcHhh-----C
Confidence 9999865433210 0 01122456789999999888887765 9
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEE
Q 000529 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404 (1441)
Q Consensus 325 SGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~iv 404 (1441)
||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.+ . +.+|+.++|+.+++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-A-GKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999998753 3 567777899999999999999999999998
Q ss_pred EEc
Q 000529 405 YQG 407 (1441)
Q Consensus 405 ~~G 407 (1441)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=339.82 Aligned_cols=213 Identities=23% Similarity=0.314 Sum_probs=178.4
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|+++.++ +++.+|+||||+|++||++||+|||||||||||++|+|..+ +..|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 46778776652 12359999999999999999999999999999999999865 35799999998764
Q ss_pred c----cccceEEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000529 924 Q----ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 924 ~----~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 998 (1441)
. ...++.+||++|++. .+...|+.||+.+..... ..+..+.++.++++++.+||.+..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 223567999999975 356689999998865432 1234444567889999999988877764 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~ 1078 (1441)
|||||++||+||+.+|+||+|||||+|||+.++..+++.|++++++|+|||++||+++ ++ +.+|++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 35 66999999985 899999
Q ss_pred cCC
Q 000529 1079 GPL 1081 (1441)
Q Consensus 1079 G~~ 1081 (1441)
|+.
T Consensus 217 g~~ 219 (274)
T PRK13644 217 GEP 219 (274)
T ss_pred CCH
Confidence 986
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=302.57 Aligned_cols=200 Identities=28% Similarity=0.404 Sum_probs=176.9
Q ss_pred eeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCccccceEEEEeccCCCCCCCCCHHH
Q 000529 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948 (1441)
Q Consensus 869 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 948 (1441)
..+|+|||++|.+||.++++||||||||||||+++|..++ ..|+|.+||.++....- .-|.|+|++.++|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 4599999999999999999999999999999999998774 57999999998764322 2389999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCH
Q 000529 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028 (1441)
Q Consensus 949 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~ 1028 (1441)
|+.|+..++ .+.+.++.+.+.+.+..+||.+..++.+ .+|||||||||.|||||+.+|++|+||||.+.||+
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999999887 4567888899999999999999887764 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHhhCeEEEEecC-cEEEEEcCC
Q 000529 1029 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GREVYVGPL 1081 (1441)
Q Consensus 1029 ~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~vllL~~g-G~~v~~G~~ 1081 (1441)
-+++.++++|-++.+ +|+.++++||+.. +..-+++++++|+.+ ||++..=++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999865 5999999999976 444568999999843 688877665
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=335.05 Aligned_cols=214 Identities=24% Similarity=0.286 Sum_probs=176.7
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc---eEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 919 (1441)
.++++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 578889887652 246999999999999999999999999999999999976421 2589999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 990 (1441)
.+... ..+++.++|++|++.+++ .|++||+.+....+ ..+.+..++.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 124567999999988887 89999998875432 1233344456788999999842 33443
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ |+|||+++|++. ++.+.+|++++|+
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999864 899999999986 4678899999998
Q ss_pred cCcEEEEEcCC
Q 000529 1071 RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ~gG~~v~~G~~ 1081 (1441)
+ |++++.|+.
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 5 899999875
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=330.88 Aligned_cols=205 Identities=20% Similarity=0.343 Sum_probs=174.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC-----ccceEEEEcCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-----PERTAAYISQHDNHIG 239 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~~~ 239 (1441)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 45999999999999999999999999999999999999988 999999999876421 1357999999988888
Q ss_pred CCCHHHHHHHHhHh-cCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 240 EMTVRETLAFAARC-QGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 240 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
.+||+||+.++... .+.. ..+....++++++.+||++..+..+++
T Consensus 91 ~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~~~~ 136 (240)
T PRK09493 91 HLTALENVMFGPLRVRGAS----------------------------------KEEAEKQARELLAKVGLAERAHHYPSE 136 (240)
T ss_pred CCcHHHHHHhHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCChHHHhcChhh
Confidence 99999999886421 1100 001122456789999998877877765
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
|||||||||+||+|++.+|++++|||||+|||..++..+.+.|+++.. . ++++++++|+.+++.+++|++++|
T Consensus 137 -----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 137 -----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-E-GMTMVIVTHEIGFAEKVASRLIFI 209 (240)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998743 3 566777889999999999999999
Q ss_pred cCCeEEEEcCHHHHH
Q 000529 399 SDGQIVYQGPRELVL 413 (1441)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1441)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988764
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=334.48 Aligned_cols=214 Identities=24% Similarity=0.306 Sum_probs=179.1
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 35778877653 24699999999999999999999999999999999998653 4799999998753
Q ss_pred c----------------cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccc
Q 000529 924 Q----------------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987 (1441)
Q Consensus 924 ~----------------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ 987 (1441)
. ...++.++|++|++.+++..|+.||+.+..... .........+.++++++.+|+.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 2 123567999999999999999999998753211 1123344455688999999998877765
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeE
Q 000529 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1066 (1441)
Q Consensus 988 vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 1066 (1441)
+ ..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. ++...+|++
T Consensus 144 ~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 P-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred h-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3 469999999999999999999999999999999999999999999999765 899999999986 577889999
Q ss_pred EEEecCcEEEEEcCC
Q 000529 1067 FLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1067 llL~~gG~~v~~G~~ 1081 (1441)
++|++ |++++.|+.
T Consensus 218 ~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 218 CFFDK-GRIVEQGKP 231 (252)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 899998875
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=332.49 Aligned_cols=204 Identities=24% Similarity=0.348 Sum_probs=170.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC-----CCCCCcceEEEECCeeCCCCC-----ccceEEEEcCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL-----DPSLKVSGRVTYNGHNMDEFV-----PERTAAYISQH 234 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l-----~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~ 234 (1441)
+++|+|+|+++++||+++|+||||||||||+++|+|.+ +|+ +|+|.++|+++.... .++.++|++|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 36999999999999999999999999999999999999 777 999999999875432 13579999999
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccc
Q 000529 235 DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADT 314 (1441)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1441)
+.++ .+||+||+.++.+..+... ..+....++++++.+||.+..+.
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~ 135 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGIKL---------------------------------KEELDERVEEALRKAALWDEVKD 135 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCCCc---------------------------------HHHHHHHHHHHHHHcCCChHHhc
Confidence 8777 8999999998754322100 00012345678999999877666
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
.+. .+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ + ++|++++|+.+++.+++|+
T Consensus 136 ~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~ 209 (227)
T cd03260 136 RLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADR 209 (227)
T ss_pred cCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCE
Confidence 530 134999999999999999999999999999999999999999999998753 3 6777788999999999999
Q ss_pred EEEecCCeEEEEcCHHH
Q 000529 395 IILLSDGQIVYQGPREL 411 (1441)
Q Consensus 395 vilL~~G~iv~~G~~~~ 411 (1441)
+++|++|++++.|++++
T Consensus 210 i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 210 TAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEeCCEEEEecCccc
Confidence 99999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=332.72 Aligned_cols=214 Identities=25% Similarity=0.325 Sum_probs=178.8
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEec
Confidence 367788887653 2469999999999999999999999999999999999865 3579999999865
Q ss_pred C------c---cccceEEEEeccCCCCCCCCCHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000529 923 K------Q---ETFARISGYCEQNDIHSPFVTVYESLFYS-AWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPG 992 (1441)
Q Consensus 923 ~------~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~-~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 992 (1441)
. . ...++.++|++|++.+++.+|+.||+.+. .... .....+..+.+.++++.+|+.+..++.+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 139 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP---- 139 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh----
Confidence 2 0 12345789999999999999999999653 2221 1223334456888999999988777764
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 993 ~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|.+
T Consensus 140 -~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~- 216 (242)
T PRK11124 140 -LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN- 216 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 469999999999999999999999999999999999999999999999877999999999986 46678999999985
Q ss_pred cEEEEEcCC
Q 000529 1073 GREVYVGPL 1081 (1441)
Q Consensus 1073 G~~v~~G~~ 1081 (1441)
|++++.|+.
T Consensus 217 g~i~~~~~~ 225 (242)
T PRK11124 217 GHIVEQGDA 225 (242)
T ss_pred CEEEEeCCH
Confidence 899999875
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=333.42 Aligned_cols=216 Identities=23% Similarity=0.278 Sum_probs=177.8
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc---eEEEEEEEcCc
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISGY 920 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~ 920 (1441)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 4 IEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred EEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 67888887652 246999999999999999999999999999999999976421 35899999998
Q ss_pred cCCc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCCCC
Q 000529 921 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGLPGV 993 (1441)
Q Consensus 921 ~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~~~ 993 (1441)
++.. ...++.+||++|++.+++.+||.||+.+....+.. ....++..+.++++++.++|.+ ..++. +
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~ 144 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP-----A 144 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----c
Confidence 7642 23456799999999888899999999886543211 1122344556889999999864 23433 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCc
Q 000529 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1441)
Q Consensus 994 ~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG 1073 (1441)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ .+.+.+|++++|++ |
T Consensus 145 ~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G 221 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-G 221 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 56999999999999999999999999999999999999999999999864 899999999986 46788999999985 8
Q ss_pred EEEEEcCC
Q 000529 1074 REVYVGPL 1081 (1441)
Q Consensus 1074 ~~v~~G~~ 1081 (1441)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (250)
T PRK14247 222 QIVEWGPT 229 (250)
T ss_pred eEEEECCH
Confidence 99998875
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=345.22 Aligned_cols=209 Identities=22% Similarity=0.250 Sum_probs=177.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc------cceEEEEcCCC--
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHD-- 235 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d-- 235 (1441)
..++|+|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..... ++.++||+|++
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~ 109 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA 109 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchh
Confidence 357999999999999999999999999999999999999987 9999999999865432 35799999997
Q ss_pred CCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc-ccccc
Q 000529 236 NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADT 314 (1441)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (1441)
.+++.+||.||+.+..+....+ +. .++....++++++.+||. ...++
T Consensus 110 ~l~p~~tv~~~i~~~l~~~~~~--------~~------------------------~~~~~~~~~~~l~~vgl~~~~~~~ 157 (331)
T PRK15079 110 SLNPRMTIGEIIAEPLRTYHPK--------LS------------------------RQEVKDRVKAMMLKVGLLPNLINR 157 (331)
T ss_pred hcCCCCCHHHHHHHHHHHhccC--------CC------------------------HHHHHHHHHHHHHHcCCChHHhcC
Confidence 5788999999999875432100 00 011223466789999994 46677
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
.+++ |||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.+ ..+.+++.++|+...+.+++|+
T Consensus 158 ~p~~-----LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~~~til~iTHdl~~~~~~~dr 231 (331)
T PRK15079 158 YPHE-----FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQR-EMGLSLIFIAHDLAVVKHISDR 231 (331)
T ss_pred Cccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhCCE
Confidence 7665 999999999999999999999999999999999999999999998754 3467788899999999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 000529 395 IILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1441)
|++|.+|++++.|+.+++.
T Consensus 232 i~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 232 VLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEEECCEEEEEcCHHHHH
Confidence 9999999999999998875
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=344.46 Aligned_cols=217 Identities=21% Similarity=0.381 Sum_probs=177.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCC-------------------Ccc
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-------------------VPE 225 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-------------------~~~ 225 (1441)
.++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 45999999999999999999999999999999999999998 99999999887542 113
Q ss_pred ceEEEEcCCCC-CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHH
Q 000529 226 RTAAYISQHDN-HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLK 304 (1441)
Q Consensus 226 ~~~~yv~Q~d~-~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1441)
+.++||+|++. .+...||+||+.|+....+.. .++...+++++++
T Consensus 116 ~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~----------------------------------~~~~~~~~~~~l~ 161 (320)
T PRK13631 116 RRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVK----------------------------------KSEAKKLAKFYLN 161 (320)
T ss_pred hcEEEEEECchhccccchHHHHHHhhHHhcCCC----------------------------------HHHHHHHHHHHHH
Confidence 67999999862 334569999999875322110 0111234667899
Q ss_pred HcCCc-cccccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEec
Q 000529 305 VLGLD-ICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQ 383 (1441)
Q Consensus 305 ~lgL~-~~~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q 383 (1441)
.+||+ ...++.+.+ |||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.. .+++|++++|
T Consensus 162 ~~gL~~~~~~~~~~~-----LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~--~g~TiiivtH 234 (320)
T PRK13631 162 KMGLDDSYLERSPFG-----LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA--NNKTVFVITH 234 (320)
T ss_pred HcCCChhHhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEec
Confidence 99996 456666554 999999999999999999999999999999999999999999998753 3567777899
Q ss_pred ChhhHHhhcCeEEEecCCeEEEEcCHHHHH---HHHHhcCCCCCC
Q 000529 384 PAPETYNLFDDIILLSDGQIVYQGPRELVL---EFFESMGFKCPK 425 (1441)
Q Consensus 384 ~~~~~~~l~D~vilL~~G~iv~~G~~~~~~---~~f~~~G~~~p~ 425 (1441)
+.+++.+++|+|++|++|++++.|+++++. +.++..|+.+|.
T Consensus 235 d~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 235 TMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 999999999999999999999999998874 234455665554
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=334.18 Aligned_cols=217 Identities=24% Similarity=0.272 Sum_probs=178.1
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc---eEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 919 (1441)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 367888887753 246999999999999999999999999999999999986532 2479999999
Q ss_pred ccCC--c---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000529 920 YPKK--Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1441)
Q Consensus 920 ~~~~--~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 990 (1441)
.++. . ..+++.++|++|++.+++.+||.||+.+....+.. ....+...+.++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8764 1 13456799999999999999999999886543211 1123334456788999999853 23333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 356999999999999999999999999999999999999999999999965 699999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000529 1071 RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ~gG~~v~~G~~ 1081 (1441)
+ |++++.|+.
T Consensus 223 ~-G~i~~~~~~ 232 (253)
T PRK14267 223 L-GKLIEVGPT 232 (253)
T ss_pred C-CEEEEeCCH
Confidence 5 899999885
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=352.04 Aligned_cols=200 Identities=29% Similarity=0.441 Sum_probs=166.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1441)
++++|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||.+..+..+ +++++||+|++.++ .-|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf-~gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLF-AGT 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCccc-ccc
Confidence 7899999999999999999999999999999999999998 9999999999887764 58999999998655 579
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCC------cccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL------DICADTMV 316 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL------~~~~dt~v 316 (1441)
+||||.++..... . +.+.++++.-|| +...||.+
T Consensus 411 ireNi~l~~~~~s------------~----------------------------e~i~~al~~a~l~~~v~~p~GLdt~i 450 (559)
T COG4988 411 IRENILLARPDAS------------D----------------------------EEIIAALDQAGLLEFVPKPDGLDTVI 450 (559)
T ss_pred HHHHhhccCCcCC------------H----------------------------HHHHHHHHHhcHHHhhcCCCcccchh
Confidence 9999999643110 0 011222333222 45778999
Q ss_pred ccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEE
Q 000529 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1441)
Q Consensus 317 g~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vi 396 (1441)
|+ .++||||||+|||++|||++++++++++||||++||.+|...|.+.|.++++ + +++++++|... ...-+|+|+
T Consensus 451 ge-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~-ktvl~itHrl~-~~~~~D~I~ 525 (559)
T COG4988 451 GE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--Q-KTVLVITHRLE-DAADADRIV 525 (559)
T ss_pred cc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--C-CeEEEEEcChH-HHhcCCEEE
Confidence 95 6788999999999999999999999999999999999999999999998753 3 55555666544 456799999
Q ss_pred EecCCeEEEEcCHHHHHH
Q 000529 397 LLSDGQIVYQGPRELVLE 414 (1441)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1441)
+|++|+++++|.++++.+
T Consensus 526 vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 526 VLDNGRLVEQGTHEELSE 543 (559)
T ss_pred EecCCceeccCCHHHHhh
Confidence 999999999999998853
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=335.01 Aligned_cols=214 Identities=27% Similarity=0.367 Sum_probs=178.4
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|+++.++ ++.+|+|+|+++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 56788877653 3469999999999999999999999999999999999865 34799999998753
Q ss_pred c---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000529 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1441)
Q Consensus 924 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1000 (1441)
. ...++.++|++|++.+++.+||+||+.+..... ....+..++.++++++.+++.+..++.++ .|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYP-----QLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHH
Confidence 2 223457999999988878899999998754321 11222334567889999999887777654 699999
Q ss_pred HHHHHHHHHHh------hCCCeeEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCcHHHHHhhCeEEEEecCc
Q 000529 1001 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1441)
Q Consensus 1001 rqRv~iA~aL~------~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG 1073 (1441)
||||+||+||+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. .+.+.+|++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999997 56899999999986 57778999999985 8
Q ss_pred EEEEEcCCC
Q 000529 1074 REVYVGPLG 1082 (1441)
Q Consensus 1074 ~~v~~G~~~ 1082 (1441)
++++.|+..
T Consensus 218 ~i~~~~~~~ 226 (258)
T PRK13548 218 RLVADGTPA 226 (258)
T ss_pred EEEeeCCHH
Confidence 999988763
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=332.06 Aligned_cols=215 Identities=26% Similarity=0.319 Sum_probs=177.7
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|+++.++ ++++|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecC
Confidence 56777776542 34699999999999999999999999999999999998653 4799999998754
Q ss_pred ccc----cceEEEEeccCCCCCCCCCHHHHHHHHHHhcCC--C---CCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000529 924 QET----FARISGYCEQNDIHSPFVTVYESLFYSAWLRLP--P---EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1441)
Q Consensus 924 ~~~----~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~--~---~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 994 (1441)
... .++.++|++|++.+++.+||+||+.+....... . ....+..+++++++++.+|+.+..+..++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG----- 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChh-----
Confidence 311 234699999999999999999999886432100 0 01123345568899999999887776644
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 995 ~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
.||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 6999999999999999999999999999999999999999999999976 799999999986 57778999999985 89
Q ss_pred EEEEcCC
Q 000529 1075 EVYVGPL 1081 (1441)
Q Consensus 1075 ~v~~G~~ 1081 (1441)
++..|+.
T Consensus 220 ~~~~~~~ 226 (242)
T TIGR03411 220 VLAEGSL 226 (242)
T ss_pred EEeeCCH
Confidence 9998875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=326.22 Aligned_cols=194 Identities=26% Similarity=0.342 Sum_probs=164.1
Q ss_pred ceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcc-ccceEEEEeccCCCCCCCCCHHHHHHH
Q 000529 874 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLFY 952 (1441)
Q Consensus 874 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f 952 (1441)
|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999865 3479999999876431 234679999999999899999999987
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHH
Q 000529 953 SAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032 (1441)
Q Consensus 953 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~ 1032 (1441)
....+. .. .+..++.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 543211 11 1233456889999999988777764 469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1033 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1033 ~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
.+++.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 999999999754 899999999986 46788999999985 7887654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=332.24 Aligned_cols=205 Identities=24% Similarity=0.348 Sum_probs=173.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC-----------ccceEEEEcC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-----------PERTAAYISQ 233 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-----------~~~~~~yv~Q 233 (1441)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q 92 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQ 92 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEec
Confidence 35899999999999999999999999999999999999987 999999999875321 1357999999
Q ss_pred CCCCCCCCCHHHHHHHHhHh-cCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccc
Q 000529 234 HDNHIGEMTVRETLAFAARC-QGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICA 312 (1441)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1441)
++.+++.+||+||+.++... .+. . ..+....++.+++.+||++..
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~--~--------------------------------~~~~~~~~~~~l~~~gl~~~~ 138 (250)
T PRK11264 93 NFNLFPHRTVLENIIEGPVIVKGE--P--------------------------------KEEATARARELLAKVGLAGKE 138 (250)
T ss_pred CcccCCCCCHHHHHHHHHHHhcCC--C--------------------------------HHHHHHHHHHHHHHcCCcchh
Confidence 98888899999999885421 110 0 001123456788999998887
Q ss_pred ccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhc
Q 000529 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLF 392 (1441)
Q Consensus 313 dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~ 392 (1441)
|+.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +.+|++++|+.+++.+++
T Consensus 139 ~~~~~~-----LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~tH~~~~~~~~~ 211 (250)
T PRK11264 139 TSYPRR-----LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-E-KRTMVIVTHEMSFARDVA 211 (250)
T ss_pred hCChhh-----CChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhc
Confidence 877765 999999999999999999999999999999999999999999998753 3 556777899999999999
Q ss_pred CeEEEecCCeEEEEcCHHHHH
Q 000529 393 DDIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 393 D~vilL~~G~iv~~G~~~~~~ 413 (1441)
|++++|++|++++.|+.+++.
T Consensus 212 d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 212 DRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred CEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999988764
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=338.01 Aligned_cols=214 Identities=25% Similarity=0.369 Sum_probs=179.4
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|++++++ +++.+|+||||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 66788887663 12359999999999999999999999999999999999865 35899999998764
Q ss_pred c---cccceEEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000529 924 Q---ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1441)
Q Consensus 924 ~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 999 (1441)
. ...++.+||++|++. .+...||.||+.+..... ....+..++.++++++.++|.+..++.+ ..||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567899999974 334579999998765422 2334445567889999999988777764 469999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEE
Q 000529 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1441)
Q Consensus 1000 qrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~ 1078 (1441)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999875 899999999986 57789999999985 899999
Q ss_pred cCC
Q 000529 1079 GPL 1081 (1441)
Q Consensus 1079 G~~ 1081 (1441)
|+.
T Consensus 220 g~~ 222 (277)
T PRK13652 220 GTV 222 (277)
T ss_pred CCH
Confidence 986
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=333.66 Aligned_cols=215 Identities=21% Similarity=0.231 Sum_probs=176.2
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc---eEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 919 (1441)
.+.++|+++.++ ++.+|+|||++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 478899987763 235999999999999999999999999999999999976532 2479999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK----PLRQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 990 (1441)
.++.. ...++.++|++|++.+++ .||+||+.+...... .......++.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87532 124567999999988775 899999988654321 112333456678889998874 334443
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ +++|||+++|+++ .+.+.+|++++|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 35699999999999999999999999999999999999999999999996 4799999999986 4678899999998
Q ss_pred cCcEEEEEcCC
Q 000529 1071 RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ~gG~~v~~G~~ 1081 (1441)
+ |+++..|+.
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 5 899999875
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=300.74 Aligned_cols=205 Identities=25% Similarity=0.386 Sum_probs=180.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCccceEEEEcCCCCCCCCCCHH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1441)
..+|+|+|+.|.+||.++++||||||||||||+++|+.+|+ .|+|.+||++++.- ...-|.|+|++.++|.+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC--CccceeEeccCccchhhHHH
Confidence 56999999999999999999999999999999999999998 99999999988753 34568999999999999999
Q ss_pred HHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCC
Q 000529 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1441)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 324 (1441)
||++|+.++.|+++ .+...++.+.+...||++..+..|-. |
T Consensus 93 dNvafgL~l~Gi~k----------------------------------~~R~~~a~q~l~~VgL~~~~~~~i~q-----L 133 (259)
T COG4525 93 DNVAFGLQLRGIEK----------------------------------AQRREIAHQMLALVGLEGAEHKYIWQ-----L 133 (259)
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHhCcccccccceEe-----e
Confidence 99999999988632 12334567889999999988887765 9
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEec--CCe
Q 000529 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS--DGQ 402 (1441)
Q Consensus 325 SGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~--~G~ 402 (1441)
||||||||.|||||..+|+.|+||||+++||.-++.++.+.|-++.+. .+.-++.++|+.+|+.-+++++++|+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~-tgk~~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE-TGKQVLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHH-hCCeEEEEeccHHHHHhhhheeEEecCCCce
Confidence 999999999999999999999999999999999999999999887764 45667779999999999999999998 589
Q ss_pred EEEEcCHHHHHH
Q 000529 403 IVYQGPRELVLE 414 (1441)
Q Consensus 403 iv~~G~~~~~~~ 414 (1441)
|+..=|++-...
T Consensus 213 vv~~~~~df~rR 224 (259)
T COG4525 213 VVERLPLDFARR 224 (259)
T ss_pred eeEecCCCHHHH
Confidence 998777664443
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=334.60 Aligned_cols=213 Identities=27% Similarity=0.368 Sum_probs=174.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC------ccceEEEEcCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1441)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 45999999999999999999999999999999999999987 999999999876432 135699999998889
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
+.+||+||+.++...... .. ... .+. ...+....++++++.+||++..++.+.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~--~~---~~~------~~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYKP--TW---RSL------LGR---------------FSEEDKERALSALERVGLADKAYQRADQ 145 (243)
T ss_pred ccccHHHHHhhccccccc--ch---hhh------hcc---------------ccHHHHHHHHHHHHHcCcHhhhcCCccc
Confidence 999999999875321100 00 000 000 0001123456789999998877877665
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ ..+++|+.++|+.+++.+++|++++|
T Consensus 146 -----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiii~tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 146 -----LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINK-EDGITVIINLHQVDLAKKYADRIVGL 219 (243)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 999999999999999999999999999999999999999999998754 33567777889999999999999999
Q ss_pred cCCeEEEEcCHHHH
Q 000529 399 SDGQIVYQGPRELV 412 (1441)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (1441)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999998765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=338.67 Aligned_cols=215 Identities=26% Similarity=0.304 Sum_probs=180.7
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
-+.++|+++.+.. ..+.+|+|||++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 3778888877631 124599999999999999999999999999999999998763 489999999876
Q ss_pred Ccc---ccceEEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000529 923 KQE---TFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 923 ~~~---~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 998 (1441)
... ..++.+||++|++. .++..||.||+.+..... ....++.+++++++++.+||.+..++.++ .|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPH-----RLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCH
Confidence 432 23567999999973 566789999998865432 12344445678999999999988877654 6999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
|||||++|||||+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++ +.+|++++|.+ |++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999876 899999999986 34 46999999985 89999
Q ss_pred EcCC
Q 000529 1078 VGPL 1081 (1441)
Q Consensus 1078 ~G~~ 1081 (1441)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13635 221 EGTP 224 (279)
T ss_pred ECCH
Confidence 9986
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=329.46 Aligned_cols=206 Identities=26% Similarity=0.368 Sum_probs=173.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc--cceEEEEcCCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP--ERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~lT 242 (1441)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 46999999999999999999999999999999999999998 9999999998754322 257999999988888999
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1441)
|+||+.+.....+.. ..+....++++++.+||++..++.+++
T Consensus 91 ~~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 132 (236)
T TIGR03864 91 VRQNLRYHAALHGLS----------------------------------RAEARERIAALLARLGLAERADDKVRE---- 132 (236)
T ss_pred HHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhcCChhh----
Confidence 999998765432110 000112356788999999888888776
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 GLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~ 402 (1441)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++. .+.++++++|+.+++.. +|++++|++|+
T Consensus 133 -LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~-~d~i~~l~~G~ 209 (236)
T TIGR03864 133 -LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRD-QGLSVLWATHLVDEIEA-DDRLVVLHRGR 209 (236)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecChhhHhh-CCEEEEEeCCe
Confidence 9999999999999999999999999999999999999999999987643 34567778888888864 99999999999
Q ss_pred EEEEcCHHHHHH
Q 000529 403 IVYQGPRELVLE 414 (1441)
Q Consensus 403 iv~~G~~~~~~~ 414 (1441)
+++.|+++++.+
T Consensus 210 i~~~~~~~~~~~ 221 (236)
T TIGR03864 210 VLADGAAAELRG 221 (236)
T ss_pred EEEeCCHHHHHH
Confidence 999999887753
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=337.14 Aligned_cols=213 Identities=23% Similarity=0.362 Sum_probs=176.7
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcc
Confidence 46778877652 24599999999999999999999999999999999997653 4799999998763
Q ss_pred c-----cccceEEEEeccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000529 924 Q-----ETFARISGYCEQNDIH-SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1441)
Q Consensus 924 ~-----~~~~~~~gyv~Q~~~~-~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 997 (1441)
. ...++.++|++|++.. ....|+.||+.+..... ....++..+.++++++.+++.+..++.+ ..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCC
Confidence 1 1234679999998753 34568999998764332 1233344456788999999988777664 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 998 gGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.+|++++|++ |++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 46788999999985 89999
Q ss_pred EcCC
Q 000529 1078 VGPL 1081 (1441)
Q Consensus 1078 ~G~~ 1081 (1441)
.|+.
T Consensus 217 ~g~~ 220 (271)
T PRK13638 217 HGAP 220 (271)
T ss_pred eCCH
Confidence 9875
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=350.08 Aligned_cols=203 Identities=25% Similarity=0.297 Sum_probs=175.0
Q ss_pred CceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcc---c----cceEEEEeccCCC
Q 000529 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE---T----FARISGYCEQNDI 939 (1441)
Q Consensus 867 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~~ 939 (1441)
+...+|+|+||+|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++... . .++.+||++|+..
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 344689999999999999999999999999999999998763 479999999876431 1 1346999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEE
Q 000529 940 HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1019 (1441)
Q Consensus 940 ~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlL 1019 (1441)
+++.+||+||+.|....+. ...++.+++++++++.+||.+..++.+ ..|||||||||+|||||+.+|++|||
T Consensus 117 l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999998765432 233445567889999999998877764 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1020 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1020 DEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999975 4899999999986 57788999999985 899999875
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=340.90 Aligned_cols=208 Identities=20% Similarity=0.258 Sum_probs=177.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc------cceEEEEcCCC--C
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHD--N 236 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d--~ 236 (1441)
+.+|+|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++..... ++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 57999999999999999999999999999999999999987 9999999999865432 35799999997 5
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc-cccccc
Q 000529 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTM 315 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1441)
+.+.+||.+++....+.... .. ..+....+.++++.+||+ ...++.
T Consensus 105 l~p~~~v~~~l~~~~~~~~~---------~~------------------------~~~~~~~~~~~l~~~gL~~~~~~~~ 151 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTS---------LS------------------------AAERREKALAMMAKVGLRPEHYDRY 151 (327)
T ss_pred cCCccCHHHHHHHHHHHccC---------CC------------------------HHHHHHHHHHHHHHCCCChHHhcCC
Confidence 78899999999876543210 00 011223567889999996 466777
Q ss_pred cccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
+++ |||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.. ..+++++.++|+...+.+++|+|
T Consensus 152 p~~-----LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~-~~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 152 PHM-----FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQ-ELGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred Ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhCCEE
Confidence 765 999999999999999999999999999999999999999999998754 34677888999999999999999
Q ss_pred EEecCCeEEEEcCHHHHHH
Q 000529 396 ILLSDGQIVYQGPRELVLE 414 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1441)
++|++|++++.|+.+++.+
T Consensus 226 ~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 9999999999999988753
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=332.58 Aligned_cols=217 Identities=20% Similarity=0.260 Sum_probs=178.3
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc---eEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 919 (1441)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 367888887763 246999999999999999999999999999999999976432 2589999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 990 (1441)
.++.. ...++.++|++|+..+++.+||+||+.+....+. ....+..++.++++++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87531 2345679999999999999999999988754331 1123344556788999999842 33333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 356999999999999999999999999999999999999999999999964 689999999986 5778899999997
Q ss_pred -----cCcEEEEEcCC
Q 000529 1071 -----RGGREVYVGPL 1081 (1441)
Q Consensus 1071 -----~gG~~v~~G~~ 1081 (1441)
+.|++++.|+.
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 25899999875
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=327.24 Aligned_cols=203 Identities=33% Similarity=0.497 Sum_probs=166.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCcceEEEECCeeCCCCCccceEEEEcCCCCCCCC
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGE 240 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~---~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1441)
.+++|+|+|+++++||+++|+||||||||||+++|+|.++ |+ +|+|.++|+++.....++.++|++|++.+++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 95 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcC
Confidence 3579999999999999999999999999999999999998 76 99999999987543345679999999989999
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHH-HHHHcCCccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDY-YLKVLGLDICADTMVGDE 319 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~dt~vg~~ 319 (1441)
+||+||+.|+......... . + ......++. .++.+++++..++.+++
T Consensus 96 ~tv~enl~~~~~~~~~~~~---~-~---------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~- 143 (226)
T cd03234 96 LTVRETLTYTAILRLPRKS---S-D---------------------------AIRKKRVEDVLLRDLALTRIGGNLVKG- 143 (226)
T ss_pred CcHHHHHHHHHHhhccccc---c-h---------------------------HHHHHHHHHHHHHhhcchhhhcccccC-
Confidence 9999999987653321000 0 0 000112233 78888998777777665
Q ss_pred cccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecCh-hhHHhhcCeEEEe
Q 000529 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPA-PETYNLFDDIILL 398 (1441)
Q Consensus 320 ~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~-~~~~~l~D~vilL 398 (1441)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.++++.+ .+ .+++.++|+. .++.+++|++++|
T Consensus 144 ----LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~-~tiii~sh~~~~~~~~~~d~i~~l 217 (226)
T cd03234 144 ----ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RN-RIVILTIHQPRSDLFRLFDRILLL 217 (226)
T ss_pred ----cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCCCHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998753 34 4555566665 6899999999999
Q ss_pred cCCeEEEEc
Q 000529 399 SDGQIVYQG 407 (1441)
Q Consensus 399 ~~G~iv~~G 407 (1441)
++|+++++|
T Consensus 218 ~~G~i~~~g 226 (226)
T cd03234 218 SSGEIVYSG 226 (226)
T ss_pred eCCEEEecC
Confidence 999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=334.03 Aligned_cols=217 Identities=25% Similarity=0.331 Sum_probs=179.1
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|+++.++ ++.+|+|||+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 56788877652 3569999999999999999999999999999999999765 34799999998753
Q ss_pred c---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000529 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1441)
Q Consensus 924 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 999 (1441)
. ...++.++|++|+..+++.+|+.|++.++...... .....+...+.++++++.+++.+..++.+ ..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHH
Confidence 2 22345699999998888889999999875311000 01111233456788999999988777764 469999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1000 qrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEc
Confidence 999999999999999999999999999999999999999999877999999999986 57889999999985 7999998
Q ss_pred CCC
Q 000529 1080 PLG 1082 (1441)
Q Consensus 1080 ~~~ 1082 (1441)
+..
T Consensus 221 ~~~ 223 (255)
T PRK11231 221 TPE 223 (255)
T ss_pred CHH
Confidence 864
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=325.20 Aligned_cols=195 Identities=27% Similarity=0.380 Sum_probs=168.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCC-CccceEEEEcCCCCCCCCCCH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-VPERTAAYISQHDNHIGEMTV 243 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV 243 (1441)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 46999999999999999999999999999999999999987 99999999887542 123579999999888889999
Q ss_pred HHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccC
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1441)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 323 (1441)
+||+.+.....+. ....++.+++.+||++..++.+++
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~----- 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKVKG----- 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhHhh-----
Confidence 9999886532210 012346678999999888887766
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000529 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1441)
Q Consensus 324 LSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~i 403 (1441)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.. .+.+++.++|+.+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD--QGITVLISSHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 345677788999999999999999999999
Q ss_pred EEEc
Q 000529 404 VYQG 407 (1441)
Q Consensus 404 v~~G 407 (1441)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=320.41 Aligned_cols=196 Identities=31% Similarity=0.588 Sum_probs=163.3
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc-eEEEEEEEcCcc
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGDIRISGYP 921 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 921 (1441)
.+.|+|++|.++.+ .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57899999998653 13457999999999999999999999999999999999986522 468999999987
Q ss_pred CCc--cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000529 922 KKQ--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1441)
Q Consensus 922 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 999 (1441)
... ...++.++|++|++.+++.+||+||+.+..... .+.. +..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234567999999999999999999997753211 2222 3469999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEE
Q 000529 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1441)
Q Consensus 1000 qrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~ 1078 (1441)
||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 678777766643467889999999985 888876
Q ss_pred c
Q 000529 1079 G 1079 (1441)
Q Consensus 1079 G 1079 (1441)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 5
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=334.86 Aligned_cols=220 Identities=26% Similarity=0.349 Sum_probs=180.3
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc-eEEEEEEEcCcc
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGDIRISGYP 921 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 921 (1441)
-+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 367888887652 346999999999999999999999999999999999986532 236999999987
Q ss_pred CCc--------cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHcCCcccccccc
Q 000529 922 KKQ--------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP-----EVNSETRKMFIEEVMELVELKPLRQSLV 988 (1441)
Q Consensus 922 ~~~--------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~-----~~~~~~~~~~v~~~l~~l~L~~~~~~~v 988 (1441)
... ...++.++|++|++.+++.+|++||+.+......+. ....++.+++++++++.+|+.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 123456899999999899999999998753211000 0112334457889999999987777764
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEE
Q 000529 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 1067 (1441)
Q Consensus 989 g~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vl 1067 (1441)
+ .||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++
T Consensus 151 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 S-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 4 69999999999999999999999999999999999999999999999764 899999999986 4778899999
Q ss_pred EEecCcEEEEEcCCC
Q 000529 1068 LMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1068 lL~~gG~~v~~G~~~ 1082 (1441)
+|++ |++++.|+..
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9985 8999998864
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=340.85 Aligned_cols=213 Identities=21% Similarity=0.250 Sum_probs=175.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-------cceEEEEcCCC--
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHD-- 235 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d-- 235 (1441)
..+|+|||++|++||+++|+|+||||||||+++|+|+++|+...+|+|.++|.++..... ++.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 569999999999999999999999999999999999998742238999999999865432 14799999997
Q ss_pred CCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccc
Q 000529 236 NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTM 315 (1441)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1441)
.+.+.+||.+++.+....... . ...+....+.++++.+||++..++
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~---------~------------------------~~~~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKG---------M------------------------SKAEAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcC---------C------------------------CHHHHHHHHHHHHHHcCCCChHHH-
Confidence 678999999999876543210 0 001122346678999999754322
Q ss_pred cccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
. +...+.|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.+ ..+++++.++|+.+.+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKR-EFNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-HcCCEEEEEECCHHHHHHhCCEE
Confidence 1 133456999999999999999999999999999999999999999999998765 34677888999999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 000529 396 ILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1441)
++|++|++++.|+.+++.
T Consensus 233 ~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999999885
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=330.68 Aligned_cols=201 Identities=25% Similarity=0.369 Sum_probs=170.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCccceEEEEcCCCCCCCCCCHH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1441)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... .+.++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHH
Confidence 35999999999999999999999999999999999999998 99999999987542 34689999998888889999
Q ss_pred HHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCC
Q 000529 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1441)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 324 (1441)
||+.++....+.. . .+....++.+++.+||++..++.+++ |
T Consensus 89 e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~-----L 129 (255)
T PRK11248 89 DNVAFGLQLAGVE----------K------------------------MQRLEIAHQMLKKVGLEGAEKRYIWQ-----L 129 (255)
T ss_pred HHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhhCChhh-----C
Confidence 9998865432110 0 01122457789999998888877765 9
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEec--CCe
Q 000529 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS--DGQ 402 (1441)
Q Consensus 325 SGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~--~G~ 402 (1441)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++... .+++|+.++|+.+++.+++|+|++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE-TGKQVLLITHDIEEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCcE
Confidence 999999999999999999999999999999999999999999987543 35667778899999999999999998 599
Q ss_pred EEEEcCHH
Q 000529 403 IVYQGPRE 410 (1441)
Q Consensus 403 iv~~G~~~ 410 (1441)
++..++.+
T Consensus 209 i~~~~~~~ 216 (255)
T PRK11248 209 VVERLPLN 216 (255)
T ss_pred EEEEecCC
Confidence 99987653
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=325.18 Aligned_cols=196 Identities=23% Similarity=0.364 Sum_probs=164.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-------cceEEEEcCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNH 237 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1441)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999999998 9999999998765432 1469999999888
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccc
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1441)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1441)
++.+||+||+.+........ . .+....+.++++.+||++..++.++
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 140 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKS----------V------------------------KEAKERAYEMLEKVGLEHRINHRPS 140 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCChh
Confidence 88999999999865322110 0 0011235678999999888887776
Q ss_pred cccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000529 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1441)
Q Consensus 318 ~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vil 397 (1441)
. |||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.. ..+.+|+.++|+.+++. .+|+|++
T Consensus 141 ~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~tH~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 141 E-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR-ELNTSFLVVTHDLELAK-KLDRVLE 213 (221)
T ss_pred h-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHh-hcCEEEE
Confidence 5 999999999999999999999999999999999999999999998754 33456666788888775 4799999
Q ss_pred ecCCeEE
Q 000529 398 LSDGQIV 404 (1441)
Q Consensus 398 L~~G~iv 404 (1441)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=346.31 Aligned_cols=204 Identities=22% Similarity=0.315 Sum_probs=176.2
Q ss_pred CceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCc----cCCc---cc---c-ceEEEEec
Q 000529 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY----PKKQ---ET---F-ARISGYCE 935 (1441)
Q Consensus 867 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~----~~~~---~~---~-~~~~gyv~ 935 (1441)
+...+|+|+||+|++||+++|+|+||||||||+++|+|...+ ..|+|.++|. +... .. . ++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 456799999999999999999999999999999999998763 4799999996 2211 11 1 24699999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCC
Q 000529 936 QNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPS 1015 (1441)
Q Consensus 936 Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~ 1015 (1441)
|+..++|.+||+||+.|+...+ ..+.+++++.++++++.+||.+..+..++ .||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886543 23445566778999999999988887654 599999999999999999999
Q ss_pred eeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCC
Q 000529 1016 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1016 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1082 (1441)
||+|||||+|||+.++..+++.|+++.++ |+|||++|||++ ++.+.+|++++|++ |+++..|+..
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999999765 899999999986 57789999999985 8999999864
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=340.86 Aligned_cols=210 Identities=20% Similarity=0.230 Sum_probs=174.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcceEEEECCeeCCCCCc-------cceEEEEcCCC-
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL-KVSGRVTYNGHNMDEFVP-------ERTAAYISQHD- 235 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 235 (1441)
.++|+|||++|++||+++|+||||||||||+++|+|++++.. ..+|+|.++|+++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 569999999999999999999999999999999999987521 138999999999865432 13699999997
Q ss_pred -CCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc---c
Q 000529 236 -NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI---C 311 (1441)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~ 311 (1441)
.+.|.+||.+++......... . ...+....++++|+.+||++ .
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~---------~------------------------~~~~~~~~~~~~L~~~gL~~~~~~ 146 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQG---------G------------------------NKKTRRQRAIDLLNQVGIPDPASR 146 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcC---------C------------------------CHHHHHHHHHHHHHHCCCCChHHH
Confidence 478899999998776543210 0 01112345677899999974 3
Q ss_pred cccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhh
Q 000529 312 ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL 391 (1441)
Q Consensus 312 ~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l 391 (1441)
.+..+++ |||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.. ..+.+++.++|+..++.++
T Consensus 147 l~~~p~~-----LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~-~~g~til~iTHdl~~~~~~ 220 (326)
T PRK11022 147 LDVYPHQ-----LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQ-KENMALVLITHDLALVAEA 220 (326)
T ss_pred HhCCchh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 4555544 999999999999999999999999999999999999999999998754 3456788899999999999
Q ss_pred cCeEEEecCCeEEEEcCHHHHH
Q 000529 392 FDDIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 392 ~D~vilL~~G~iv~~G~~~~~~ 413 (1441)
+|+|++|.+|++++.|+.+++.
T Consensus 221 adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 221 AHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred CCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999998875
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=333.42 Aligned_cols=223 Identities=23% Similarity=0.295 Sum_probs=178.9
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|+++.++.....+ ..+++.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 67788887764210000 0123579999999999999999999999999999999999865 35799999998764
Q ss_pred cc------ccceEEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000529 924 QE------TFARISGYCEQND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVN 994 (1441)
Q Consensus 924 ~~------~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 994 (1441)
.. ..++.++|++|++ .+.+.+||+|++.+...... .......++.++++++.+|+. +..+..+ .
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKLP-----R 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCCh-----h
Confidence 31 1345799999996 46678999999976543211 122334455688999999996 5666654 4
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCc
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1441)
Q Consensus 995 ~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG 1073 (1441)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+.+.+|++++|++ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 69999999999999999999999999999999999999999999999865 899999999986 46678999999985 8
Q ss_pred EEEEEcCC
Q 000529 1074 REVYVGPL 1081 (1441)
Q Consensus 1074 ~~v~~G~~ 1081 (1441)
++++.|+.
T Consensus 228 ~i~~~g~~ 235 (265)
T TIGR02769 228 QIVEECDV 235 (265)
T ss_pred EEEEECCH
Confidence 99999886
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=334.97 Aligned_cols=218 Identities=28% Similarity=0.370 Sum_probs=179.9
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 478888887652 3469999999999999999999999999999999999865 3479999999875
Q ss_pred Cc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 998 (1441)
.. ...++.++|++|+..+++.+|+.||+.+....... ........++.++++++.+++.+..++.++ .|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD-----SLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCCH
Confidence 32 23456799999998888889999999875321110 001112334567899999999877777654 5999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
|||||++|||||+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999986 57788999999985 89999
Q ss_pred EcCCC
Q 000529 1078 VGPLG 1082 (1441)
Q Consensus 1078 ~G~~~ 1082 (1441)
.|+..
T Consensus 229 ~~~~~ 233 (265)
T PRK10575 229 QGTPA 233 (265)
T ss_pred ecCHH
Confidence 98763
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=328.44 Aligned_cols=210 Identities=27% Similarity=0.325 Sum_probs=173.1
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
+++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 2 EVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITK 66 (230)
T ss_pred EEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCC
Confidence 4677776552 3469999999999999999999999999999999999865 347999999987543
Q ss_pred c----ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCcCCHH
Q 000529 925 E----TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE-LKPLRQSLVGLPGVNGLSTE 999 (1441)
Q Consensus 925 ~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LSgG 999 (1441)
. ..++.++|++|++.+++.+|+.|++.+....+. .. ..+..+++++.++ +.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G 135 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRG-----GDLSGG 135 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCCh-----hhCCHH
Confidence 1 124569999999999999999999988654321 11 1233567777776 555556553 469999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEE
Q 000529 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1441)
Q Consensus 1000 qrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~ 1078 (1441)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|++++|++ |+++..
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~ 213 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVAS 213 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999874 899999999986 56678999999985 899999
Q ss_pred cCCC
Q 000529 1079 GPLG 1082 (1441)
Q Consensus 1079 G~~~ 1082 (1441)
|+..
T Consensus 214 ~~~~ 217 (230)
T TIGR03410 214 GAGD 217 (230)
T ss_pred CCHH
Confidence 9864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=334.98 Aligned_cols=218 Identities=22% Similarity=0.297 Sum_probs=180.8
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ ..|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEEh
Confidence 578889988763 34699999999999999999999999999999999998653 479999999875
Q ss_pred Cc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 998 (1441)
.. ...++.++|++|++.+++..|++|++.+......+ .....+..++.++++++.++|.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCh
Confidence 42 22345699999999888889999999765211100 00011233456789999999988777764 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.+.+|++++|++ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999864 899999999986 57889999999985 89999
Q ss_pred EcCCC
Q 000529 1078 VGPLG 1082 (1441)
Q Consensus 1078 ~G~~~ 1082 (1441)
.|+..
T Consensus 225 ~g~~~ 229 (265)
T PRK10253 225 QGAPK 229 (265)
T ss_pred eCCHH
Confidence 99864
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=336.53 Aligned_cols=218 Identities=24% Similarity=0.334 Sum_probs=176.7
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|++++++... ...+++|+|||++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 71 (280)
T PRK13649 2 GINLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLI 71 (280)
T ss_pred eEEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 367888887763210 0113599999999999999999999999999999999998653 579999999875
Q ss_pred Cc-------cccceEEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCC
Q 000529 923 KQ-------ETFARISGYCEQND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPG 992 (1441)
Q Consensus 923 ~~-------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~ 992 (1441)
.. ...++.++|++|++ .+++ .||+||+.+..... ....++.++.++++++.++|.+ ..++.+
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 143 (280)
T PRK13649 72 TSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNP---- 143 (280)
T ss_pred cccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc----
Confidence 32 12456799999986 3444 69999998765332 1233444556788999999973 455553
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 993 ~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++
T Consensus 144 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~- 220 (280)
T PRK13649 144 -FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK- 220 (280)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-
Confidence 469999999999999999999999999999999999999999999999877899999999986 56778999999985
Q ss_pred cEEEEEcCC
Q 000529 1073 GREVYVGPL 1081 (1441)
Q Consensus 1073 G~~v~~G~~ 1081 (1441)
|++++.|+.
T Consensus 221 G~i~~~g~~ 229 (280)
T PRK13649 221 GKLVLSGKP 229 (280)
T ss_pred CEEEEeCCH
Confidence 899998875
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=324.31 Aligned_cols=192 Identities=28% Similarity=0.355 Sum_probs=163.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCccceEEEEcCCCC-CCCCCCH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDN-HIGEMTV 243 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 243 (1441)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 46999999999999999999999999999999999999998 9999999998754333467999999864 3557899
Q ss_pred HHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccC
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1441)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 323 (1441)
+||+.++....+. ....++++++.+||++..++.+++
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~----- 126 (205)
T cd03226 90 REELLLGLKELDA--------------------------------------GNEQAETVLKDLDLYALKERHPLS----- 126 (205)
T ss_pred HHHHhhhhhhcCc--------------------------------------cHHHHHHHHHHcCCchhcCCCchh-----
Confidence 9999875432100 012356789999999888888766
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000529 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1441)
Q Consensus 324 LSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~i 403 (1441)
|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.. . +.+++.++|+.+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-Q-GKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998753 3 56677788999999999999999999997
Q ss_pred E
Q 000529 404 V 404 (1441)
Q Consensus 404 v 404 (1441)
|
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=317.65 Aligned_cols=190 Identities=59% Similarity=0.946 Sum_probs=161.1
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++.++.. ..++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 46788888876421 012469999999999999999999999999999999999643224589999999876
Q ss_pred CccccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000529 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1441)
Q Consensus 923 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1002 (1441)
. ...++.++|++|++.+++.+|++||+.+...++ .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 4 334567999999998889999999998643110 39999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1003 Rv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
|++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++.++.+.+|++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999987799999999998644678899999998548998875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=334.47 Aligned_cols=214 Identities=28% Similarity=0.356 Sum_probs=178.0
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|+++.+. +++.+|+|||++|++||+++|+||||||||||+++|+|...+ ..|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECc
Confidence 56788887653 123599999999999999999999999999999999997653 4799999998763
Q ss_pred c-----cccceEEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000529 924 Q-----ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1441)
Q Consensus 924 ~-----~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 997 (1441)
. ...++.++|++|++. .+...||.|++.+..... ....++..+.+.++++.++|.+..++.++ .||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPH-----HLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChh-----hCC
Confidence 1 123567999999963 333479999998764321 12334445668899999999888887654 699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 998 gGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++.+.||++++|++ |++++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 57778999999985 89999
Q ss_pred EcCC
Q 000529 1078 VGPL 1081 (1441)
Q Consensus 1078 ~G~~ 1081 (1441)
.|+.
T Consensus 218 ~g~~ 221 (275)
T PRK13639 218 EGTP 221 (275)
T ss_pred eCCH
Confidence 9886
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=325.32 Aligned_cols=213 Identities=25% Similarity=0.358 Sum_probs=175.3
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.++.. .....+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEc
Confidence 47888988776321 0113599999999999999999999999999999999998653 479999999876
Q ss_pred Cccc------c-ceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000529 923 KQET------F-ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG 995 (1441)
Q Consensus 923 ~~~~------~-~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 995 (1441)
.... . ++.++|++|++.+++.+|+.||+.+....+. ......+++++++++.+++.+..++.+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4311 1 2469999999988888999999987654321 223344567889999999988777664 36
Q ss_pred CCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 996 LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ .+ +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999764 899999999986 34 56999999985 77
Q ss_pred EEE
Q 000529 1075 EVY 1077 (1441)
Q Consensus 1075 ~v~ 1077 (1441)
+++
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=335.98 Aligned_cols=216 Identities=27% Similarity=0.389 Sum_probs=178.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCC-CCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHD-NHIGE 240 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 240 (1441)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 35899999999999999999999999999999999999998 9999999999865432 35799999986 36778
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1441)
.||.||+.++.+..+.. .++....++++++.+||++..++.+++
T Consensus 97 ~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~~~-- 140 (279)
T PRK13635 97 ATVQDDVAFGLENIGVP----------------------------------REEMVERVDQALRQVGMEDFLNREPHR-- 140 (279)
T ss_pred ccHHHHHhhhHhhCCCC----------------------------------HHHHHHHHHHHHHHcCChhhhhCCccc--
Confidence 89999999875432110 011123467889999999888888876
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~ 400 (1441)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. ..+++|++++|+.+++. .+|+|++|++
T Consensus 141 ---LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~~~~tilivsH~~~~~~-~~d~i~~l~~ 215 (279)
T PRK13635 141 ---LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE-QKGITVLSITHDLDEAA-QADRVIVMNK 215 (279)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998754 33566777888888886 5999999999
Q ss_pred CeEEEEcCHHHHHH---HHHhcCCCCC
Q 000529 401 GQIVYQGPRELVLE---FFESMGFKCP 424 (1441)
Q Consensus 401 G~iv~~G~~~~~~~---~f~~~G~~~p 424 (1441)
|++++.|+.+++.. .+...|..+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 99999999988753 3334454443
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=331.87 Aligned_cols=217 Identities=20% Similarity=0.257 Sum_probs=177.6
Q ss_pred CceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCC--C-ceEEEEEEE
Q 000529 841 PYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGDIRI 917 (1441)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i 917 (1441)
...+.++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.+
T Consensus 11 ~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~ 77 (260)
T PRK10744 11 PSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILL 77 (260)
T ss_pred CceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEE
Confidence 34688999988763 2369999999999999999999999999999999999753 1 135799999
Q ss_pred cCccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccc
Q 000529 918 SGYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLV 988 (1441)
Q Consensus 918 ~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~v 988 (1441)
+|.+... ...++.++|++|+..+++ .|++||+.+...... ..+.+..+++++++++.+++.+ ..+..
T Consensus 78 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 153 (260)
T PRK10744 78 DGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS- 153 (260)
T ss_pred CCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC-
Confidence 9987632 134567999999988777 899999987654321 1233444566889999999843 23333
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEE
Q 000529 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1068 (1441)
Q Consensus 989 g~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vll 1068 (1441)
...||||||||++|||||+.+|+||+|||||+|||+.++..+.+.|+++. ++.|||++||++. ++.+.+|++++
T Consensus 154 ----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~ 227 (260)
T PRK10744 154 ----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAF 227 (260)
T ss_pred ----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEE
Confidence 34699999999999999999999999999999999999999999999996 4789999999986 46778999999
Q ss_pred EecCcEEEEEcCC
Q 000529 1069 MKRGGREVYVGPL 1081 (1441)
Q Consensus 1069 L~~gG~~v~~G~~ 1081 (1441)
|++ |+++..|+.
T Consensus 228 l~~-G~i~~~g~~ 239 (260)
T PRK10744 228 MYL-GELIEFGNT 239 (260)
T ss_pred EEC-CEEEEeCCH
Confidence 985 899999875
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=342.65 Aligned_cols=229 Identities=24% Similarity=0.339 Sum_probs=184.5
Q ss_pred cCCCCCcceEEEeeeEEEEEeecccccCCChhhhhhHHHHHHhhhhhcCCCccccceeeeceEEEEeCCeEEEEEcCCCC
Q 000529 110 VGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSS 189 (1441)
Q Consensus 110 ~g~~~p~v~v~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~Gs 189 (1441)
..+..|.=.|+|+|++.+-. ++++||+++||+|++||-+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCC
Confidence 45667777899999887741 234699999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCCCHHHHHHHHhHhcCCCchhhhhhHh
Q 000529 190 GKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTEL 266 (1441)
Q Consensus 190 GKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 266 (1441)
||||+|++|.++++ . +|+|.+||.++.+... |+.+|||||+..+| +-||.+||.++..- ..++.+.+.
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn~s----as~eeV~e~ 460 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGNPS----ASDEEVVEA 460 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCCCC----cCHHHHHHH
Confidence 99999999999998 5 8999999999987654 57899999976554 56999999997532 123444455
Q ss_pred hHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCCChhhhhHHHHHHHHhcCCccce
Q 000529 267 SRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALF 346 (1441)
Q Consensus 267 ~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vll 346 (1441)
|++-.. +.+ ...|++.++|.||+. ++-|||||||||++|||++.+|+|++
T Consensus 461 ~k~a~~---------------------------hd~--i~~l~~GY~T~VGer-G~~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 461 CKRAGL---------------------------HDV--ISRLPDGYQTLVGER-GLMLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred HHHcCc---------------------------HHH--HHhccccchhhHhhc-ccccccchHHHHHHHHHHhcCCCeEE
Confidence 543211 111 235788999999973 34499999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEEcCHHHHHH
Q 000529 347 MDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 414 (1441)
Q Consensus 347 LDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~iv~~G~~~~~~~ 414 (1441)
+|||||.||+.|..++++.+.+. ..++| +|.+.|+.+ +..-||+|++|++|++...|+.++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~--~~~rT-vI~IvH~l~-ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDV--MSGRT-VIMIVHRLD-LLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHh--cCCCe-EEEEEecch-hHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999873 23445 445556544 567799999999999999999999875
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=330.24 Aligned_cols=219 Identities=22% Similarity=0.294 Sum_probs=175.7
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCC--C-ceEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 919 (1441)
.+.++|+++++. ++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14242 6 KMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG 72 (253)
T ss_pred EEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECC
Confidence 588999988763 2469999999999999999999999999999999999642 1 13579999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 994 (1441)
.+... ...++.++|++|++.+++ .||+||+.+....+.. ...+..++.++++++.+++.+........ .+.
T Consensus 73 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 148 (253)
T PRK14242 73 ENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLHE-SAL 148 (253)
T ss_pred EEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhC-Ccc
Confidence 87642 123567999999988887 5999999887543311 12233455678899999985421111111 135
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 995 ~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 149 ~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~-G~ 225 (253)
T PRK14242 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM-GK 225 (253)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-CE
Confidence 6999999999999999999999999999999999999999999999954 799999999986 57788999999985 89
Q ss_pred EEEEcCC
Q 000529 1075 EVYVGPL 1081 (1441)
Q Consensus 1075 ~v~~G~~ 1081 (1441)
++..|+.
T Consensus 226 i~~~g~~ 232 (253)
T PRK14242 226 LIEVGPT 232 (253)
T ss_pred EEEeCCH
Confidence 9998875
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=340.19 Aligned_cols=225 Identities=20% Similarity=0.291 Sum_probs=182.3
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc-eEEEEEEEcCcc
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGDIRISGYP 921 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 921 (1441)
-++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 47889988776421 12356999999999999999999999999999999999976532 237999999988
Q ss_pred CCc---cc---cc-eEEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000529 922 KKQ---ET---FA-RISGYCEQND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPG 992 (1441)
Q Consensus 922 ~~~---~~---~~-~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 992 (1441)
+.. .. ++ +.++||+|++ .+.|.+|+.+++........ ....++..+++.++++.++|.+..+.. + ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CC
Confidence 643 11 22 4799999998 67889999999877654432 234455556788999999997533221 1 12
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEec
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1441)
Q Consensus 993 ~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~ 1071 (1441)
+.+|||||||||+||+||+.+|++|++||||+|||+.++..+++.|+++.++ |.|||++|||++ .+.+.+|++++|.
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~- 236 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY- 236 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE-
Confidence 4579999999999999999999999999999999999999999999999765 899999999986 4667899999997
Q ss_pred CcEEEEEcCCC
Q 000529 1072 GGREVYVGPLG 1082 (1441)
Q Consensus 1072 gG~~v~~G~~~ 1082 (1441)
+|++++.|+..
T Consensus 237 ~G~ive~g~~~ 247 (330)
T PRK09473 237 AGRTMEYGNAR 247 (330)
T ss_pred CCEEEEECCHH
Confidence 58999999863
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=339.24 Aligned_cols=221 Identities=19% Similarity=0.241 Sum_probs=180.0
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCC-c-eEEEEEEEcCcc
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YITGDIRISGYP 921 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~-~-~~~G~i~i~g~~ 921 (1441)
++++|+++.+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++ + ..+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 6788888776421 1125699999999999999999999999999999999997642 2 357999999987
Q ss_pred CCcc---c----cceEEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc---cccccc
Q 000529 922 KKQE---T----FARISGYCEQND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL---RQSLVG 989 (1441)
Q Consensus 922 ~~~~---~----~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~---~~~~vg 989 (1441)
+... . .++.++|++|++ .+.|.+|+.+++........ ....++.++++.++++.+||.+. .+..
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-- 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY-- 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC--
Confidence 6431 1 123699999998 46788999998866543321 12345556778999999999753 3333
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHhhCeEEE
Q 000529 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFL 1068 (1441)
Q Consensus 990 ~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~vll 1068 (1441)
+.+|||||||||+|||||+.+|++|++||||+|||+.++..+++.|+++.+ .|.|||++|||++ .+.+.+|++++
T Consensus 151 ---p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~v 226 (326)
T PRK11022 151 ---PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIV 226 (326)
T ss_pred ---chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 357999999999999999999999999999999999999999999999976 4899999999986 46788999999
Q ss_pred EecCcEEEEEcCCC
Q 000529 1069 MKRGGREVYVGPLG 1082 (1441)
Q Consensus 1069 L~~gG~~v~~G~~~ 1082 (1441)
|. +|+++..|+..
T Consensus 227 m~-~G~ive~g~~~ 239 (326)
T PRK11022 227 MY-AGQVVETGKAH 239 (326)
T ss_pred EE-CCEEEEECCHH
Confidence 98 48999999863
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=325.10 Aligned_cols=201 Identities=26% Similarity=0.355 Sum_probs=166.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC------ccceEEEEcCCC--CC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHD--NH 237 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 237 (1441)
++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999999988 999999999886543 135799999997 46
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc-ccccccc
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTMV 316 (1441)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (1441)
++.+||+||+.+.....+.... + +......+.+++.+||. ...++.+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~----------~----------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSK----------K----------------------EARKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcH----------H----------------------HHHHHHHHHHHHHCCCChhHhhCCc
Confidence 6789999999886543211000 0 00011124678889995 5667776
Q ss_pred ccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEE
Q 000529 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1441)
Q Consensus 317 g~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vi 396 (1441)
++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++. ..+.+|+.++|+.+++.+++|+|+
T Consensus 144 ~~-----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 144 HE-----LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQE-ELGLTLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhcCeEE
Confidence 65 999999999999999999999999999999999999999999998754 325667778889999999999999
Q ss_pred EecCCeEEEEc
Q 000529 397 LLSDGQIVYQG 407 (1441)
Q Consensus 397 lL~~G~iv~~G 407 (1441)
+|++|+++.+|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=327.79 Aligned_cols=203 Identities=25% Similarity=0.400 Sum_probs=169.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc----cceEEEEcCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1441)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 35999999999999999999999999999999999999998 9999999998765432 3569999999888999
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHc-CCccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVL-GLDICADTMVGDE 319 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 319 (1441)
+||+||+.++..... . . +....++.+++.+ +|.+..++.+++
T Consensus 95 ~tv~~~l~~~~~~~~---~---------~------------------------~~~~~~~~~l~~~~~l~~~~~~~~~~- 137 (237)
T PRK11614 95 MTVEENLAMGGFFAE---R---------D------------------------QFQERIKWVYELFPRLHERRIQRAGT- 137 (237)
T ss_pred CcHHHHHHHhhhccC---h---------h------------------------HHHHHHHHHHHHHHHHHHHHhCchhh-
Confidence 999999988642110 0 0 0011234456666 466666666554
Q ss_pred cccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000529 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1441)
Q Consensus 320 ~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~ 399 (1441)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+.+++.+++|++++|+
T Consensus 138 ----LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~ 211 (237)
T PRK11614 138 ----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-Q-GMTIFLVEQNANQALKLADRGYVLE 211 (237)
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHhhCCEEEEEe
Confidence 999999999999999999999999999999999999999999998753 3 4566668899999999999999999
Q ss_pred CCeEEEEcCHHHHH
Q 000529 400 DGQIVYQGPRELVL 413 (1441)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1441)
+|++++.|+++++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999998774
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=325.66 Aligned_cols=212 Identities=27% Similarity=0.395 Sum_probs=179.2
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
.++|+++++. .+.+|+|+|++++|||+++|+|+||||||||+++|+|..++ ..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 4677777652 34699999999999999999999999999999999998763 47999999987643
Q ss_pred c-ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000529 925 E-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003 (1441)
Q Consensus 925 ~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1003 (1441)
. ..++.++|++|++..++.+|+.||+.+....+. .......+.++++++.+|+.+..++.+ ..||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 2 124579999999998888999999987654331 223344556788999999988777764 4699999999
Q ss_pred HHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1004 v~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999999999999999999999865 899999999986 47788999999985 899988864
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=337.44 Aligned_cols=207 Identities=26% Similarity=0.358 Sum_probs=174.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCC--CC---ccceEEEEcCCCC-CC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE--FV---PERTAAYISQHDN-HI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~--~~---~~~~~~yv~Q~d~-~~ 238 (1441)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .. .++.++|++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 35999999999999999999999999999999999999998 9999999998742 11 2357999999863 34
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
...||+||+.++....+.. . .+....++++++.+||.+..++.+++
T Consensus 96 ~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~~~ 141 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKLP----------E------------------------DEVRKRVDNALKRTGIEHLKDKPTHC 141 (283)
T ss_pred ccccHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCChhhhhCCccc
Confidence 5689999999865432210 0 01123467789999999888888766
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ..+++|+.++|+.+++.++||++++|
T Consensus 142 -----LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tillvsH~~~~~~~~~dri~~l 215 (283)
T PRK13636 142 -----LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK-ELGLTIIIATHDIDIVPLYCDNVFVM 215 (283)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998765 33566777899999999999999999
Q ss_pred cCCeEEEEcCHHHHHH
Q 000529 399 SDGQIVYQGPRELVLE 414 (1441)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1441)
++|++++.|+.+++..
T Consensus 216 ~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 216 KEGRVILQGNPKEVFA 231 (283)
T ss_pred ECCEEEEeCCHHHHhc
Confidence 9999999999988753
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=332.48 Aligned_cols=217 Identities=28% Similarity=0.390 Sum_probs=178.1
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcc
Confidence 46677776652 34699999999999999999999999999999999998653 4799999998754
Q ss_pred c---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000529 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1441)
Q Consensus 924 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 999 (1441)
. ...++.++|++|++..++.+||.||+.+....... ......+..+.+.++++.+++.+..++.++ .||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS-----TLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHH
Confidence 3 12345689999998777889999999875311100 001112334567889999999887777643 69999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1000 qrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
||||++||+||+.+|++++|||||+|||+.+...+++.|+++.++|.|||+++|+++ .+.+.+|++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999877899999999987 57789999999985 7999998
Q ss_pred CCC
Q 000529 1080 PLG 1082 (1441)
Q Consensus 1080 ~~~ 1082 (1441)
+..
T Consensus 220 ~~~ 222 (256)
T TIGR03873 220 PPR 222 (256)
T ss_pred CHH
Confidence 863
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=327.86 Aligned_cols=198 Identities=24% Similarity=0.375 Sum_probs=167.1
Q ss_pred eeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCccccceEEEEeccCCCCCCCCCHHHHHH
Q 000529 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLF 951 (1441)
Q Consensus 872 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 951 (1441)
|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999865 35799999998764322 12489999999999999999998
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHH
Q 000529 952 YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1031 (1441)
Q Consensus 952 f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~ 1031 (1441)
+......+ ....++.++.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 76321111 2233444556789999999988777764 46999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1032 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1032 ~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998765 899999999986 57788999999985 899988764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=364.22 Aligned_cols=222 Identities=21% Similarity=0.307 Sum_probs=185.3
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++++. ++.+|+||||+|++||+++|+||||||||||+++|+|..++++.+|+|.++|.+.
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 378888887652 3469999999999999999999999999999999999865433589999999876
Q ss_pred Cccc----cceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000529 923 KQET----FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 923 ~~~~----~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 998 (1441)
.... .++.+||++|++.+++.+||+||+.+....+.......+..++.++++++.+++.+..++.++ .|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG-----NLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCH
Confidence 4321 235699999999888999999999886543211111233445568899999999887777654 6999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~ 1078 (1441)
||||||+||+||+.+|+||||||||+|||+.++..+++.|++++++|.|||++||+++ .+.+.+|++++|++ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999877999999999986 57778999999985 899999
Q ss_pred cCCCCc
Q 000529 1079 GPLGHH 1084 (1441)
Q Consensus 1079 G~~~~~ 1084 (1441)
|+..+.
T Consensus 225 ~~~~~~ 230 (506)
T PRK13549 225 RPAAGM 230 (506)
T ss_pred cccccC
Confidence 987643
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=329.35 Aligned_cols=215 Identities=22% Similarity=0.297 Sum_probs=174.9
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCC---CCceEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~---~~~~~~G~i~i~g 919 (1441)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 467888887652 246999999999999999999999999999999999952 2212479999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL----RQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~ 990 (1441)
.+... ...++.++|++|++.+++ .|+.||+.+....+.. ...+..++.++++++.+++.+. .+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 143 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKES--- 143 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhCC---
Confidence 87642 123567999999988776 6999999886543311 1223344567889999998642 3333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14245 144 --AFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFY 219 (250)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 35699999999999999999999999999999999999999999999995 4799999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000529 1071 RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ~gG~~v~~G~~ 1081 (1441)
+ |++++.|+.
T Consensus 220 ~-G~~~~~~~~ 229 (250)
T PRK14245 220 M-GEMVEYDDT 229 (250)
T ss_pred C-CEEEEECCH
Confidence 5 899999976
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=324.48 Aligned_cols=197 Identities=29% Similarity=0.440 Sum_probs=168.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC--ccceEEEEcCCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1441)
.++|+|+|+++++| +++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 36999999999999 99999999999999999999999998 999999998875432 2467999999998899999
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1441)
|+||+.+.....+.. + .+....++.+++.+||++..++.+++
T Consensus 89 v~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~---- 130 (211)
T cd03264 89 VREFLDYIAWLKGIP----------S------------------------KEVKARVDEVLELVNLGDRAKKKIGS---- 130 (211)
T ss_pred HHHHHHHHHHHhCCC----------H------------------------HHHHHHHHHHHHHCCCHHHHhCchhh----
Confidence 999999865432210 0 00122456789999999888888766
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 GLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~ 402 (1441)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.. + +++++++|+.+++.+++|++++|++|+
T Consensus 131 -LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 131 -LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGK 206 (211)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999998743 3 677778899999999999999999999
Q ss_pred EEEEc
Q 000529 403 IVYQG 407 (1441)
Q Consensus 403 iv~~G 407 (1441)
+++.|
T Consensus 207 i~~~g 211 (211)
T cd03264 207 LVFEG 211 (211)
T ss_pred EEecC
Confidence 98765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=322.66 Aligned_cols=203 Identities=26% Similarity=0.307 Sum_probs=183.0
Q ss_pred eeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc---c---c-cceEEEEeccCCCCC
Q 000529 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---E---T-FARISGYCEQNDIHS 941 (1441)
Q Consensus 869 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~---~-~~~~~gyv~Q~~~~~ 941 (1441)
..-++|+|++|+.||++.|||-||||||||+++|.+... +..|+|.++|.++.. . . .++.++.|+|+..++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 457899999999999999999999999999999999876 458999999987642 1 2 245799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeC
Q 000529 942 PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021 (1441)
Q Consensus 942 ~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDE 1021 (1441)
|+.||.||..|+..++ ..+++++++++.++|+.+||....++++ ++||||+||||.|||||+.+|+||+|||
T Consensus 119 PhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecC
Confidence 9999999999998776 4677889999999999999999999884 5699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCCC
Q 000529 1022 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1441)
Q Consensus 1022 PTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~~ 1083 (1441)
|+|.|||--+.++++-|.++.++ ++|||++|||.+ +.+.+-|||.+|+ +|+++..|++.+
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~e 251 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPEE 251 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHHH
Confidence 99999999999999999998655 899999999997 6889999999997 699999999853
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=330.29 Aligned_cols=194 Identities=22% Similarity=0.296 Sum_probs=168.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCccceEEEEcCCCCCCCCCCHHH
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRE 245 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1441)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~--~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAEA--REDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHHh--hCceEEEecCccCCCCCcHHH
Confidence 5899999999999999999999999999999999999998 99999999876432 467999999988888899999
Q ss_pred HHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCCC
Q 000529 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1441)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 325 (1441)
|+.++... . ....++.+++.+||++..+..+++ ||
T Consensus 101 nl~~~~~~-----~-----------------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LS 135 (257)
T PRK11247 101 NVGLGLKG-----Q-----------------------------------WRDAALQALAAVGLADRANEWPAA-----LS 135 (257)
T ss_pred HHHhcccc-----h-----------------------------------HHHHHHHHHHHcCChhHhcCChhh-----CC
Confidence 99874210 0 011245678999998887877765 99
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEE
Q 000529 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVY 405 (1441)
Q Consensus 326 GGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~iv~ 405 (1441)
|||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++... .+.+|++++|+.+++.+++|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ-HGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999987543 35667778899999999999999999999999
Q ss_pred EcCHH
Q 000529 406 QGPRE 410 (1441)
Q Consensus 406 ~G~~~ 410 (1441)
+|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88754
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=339.03 Aligned_cols=226 Identities=25% Similarity=0.275 Sum_probs=183.5
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
-++++|+++.+....... ...+...+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 478899987774321000 001235799999999999999999999999999999999998653 479999999876
Q ss_pred Ccc------ccceEEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000529 923 KQE------TFARISGYCEQND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGV 993 (1441)
Q Consensus 923 ~~~------~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 993 (1441)
... .+++.++||+|++ .+.|.+|+.+++........ .....+.++++.++++.+||.+ ..++. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 431 2456799999997 57888999999876544321 2344455677899999999964 45555 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 994 ~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
..|||||||||+|||||+.+|++|++||||+|||..++..|+++|+++.++ |.|||++|||++ .+.+.+|++++|.+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 469999999999999999999999999999999999999999999999764 999999999986 46678999999985
Q ss_pred cEEEEEcCCC
Q 000529 1073 GREVYVGPLG 1082 (1441)
Q Consensus 1073 G~~v~~G~~~ 1082 (1441)
|++++.|+..
T Consensus 231 G~ive~g~~~ 240 (327)
T PRK11308 231 GRCVEKGTKE 240 (327)
T ss_pred CEEEEECCHH
Confidence 8999999863
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=318.90 Aligned_cols=180 Identities=43% Similarity=0.748 Sum_probs=155.6
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCcceEEEECCeeCCCCC--ccceEEEEcCCCCC
Q 000529 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNH 237 (1441)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~---~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~ 237 (1441)
.++.+|+|+|+++++||+++|+||||||||||+++|+|.++ |+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~---~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~ 94 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV---EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH 94 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc---ceEEEECCEECccchhhhcceEEEEeccccc
Confidence 44579999999999999999999999999999999999998 66 999999999876532 24679999999999
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccc
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1441)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1441)
++.+||+||+.++.+.. .++.+
T Consensus 95 ~~~~tv~~~l~~~~~~~---------------------------------------------------------~~~~~- 116 (202)
T cd03233 95 FPTLTVRETLDFALRCK---------------------------------------------------------GNEFV- 116 (202)
T ss_pred CCCCcHHHHHhhhhhhc---------------------------------------------------------cccch-
Confidence 99999999998753210 12333
Q ss_pred cccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000529 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1441)
Q Consensus 318 ~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vil 397 (1441)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.++++....+.++++++||+.+++.+++|++++
T Consensus 117 ----~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 117 ----RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred ----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence 3499999999999999999999999999999999999999999999876533556777778888999999999999
Q ss_pred ecCCeEEEEc
Q 000529 398 LSDGQIVYQG 407 (1441)
Q Consensus 398 L~~G~iv~~G 407 (1441)
|++|++++.|
T Consensus 193 l~~G~i~~~g 202 (202)
T cd03233 193 LYEGRQIYYG 202 (202)
T ss_pred EECCEEEecC
Confidence 9999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=330.58 Aligned_cols=224 Identities=21% Similarity=0.249 Sum_probs=180.1
Q ss_pred cCCCceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCC---ceEEEE
Q 000529 838 PFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGD 914 (1441)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~ 914 (1441)
|-.+..+.++|++++++ ++.+|+|||+++++||++||+|||||||||||++|+|...+ .+.+|+
T Consensus 15 ~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 81 (267)
T PRK14237 15 PEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ 81 (267)
T ss_pred CCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE
Confidence 33344689999988763 24699999999999999999999999999999999997642 135899
Q ss_pred EEEcCccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccccc
Q 000529 915 IRISGYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989 (1441)
Q Consensus 915 i~i~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg 989 (1441)
|.++|.+... ...++.++|++|++.+++ .||+||+.+..... .....+..++.++++++.++|.+..+....
T Consensus 82 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 82 ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred EEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 9999987632 123567999999988877 69999998864322 112233445668889999998642211122
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEE
Q 000529 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1069 (1441)
Q Consensus 990 ~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL 1069 (1441)
. .+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.||++++|
T Consensus 159 ~-~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l 235 (267)
T PRK14237 159 K-SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFF 235 (267)
T ss_pred C-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEE
Confidence 1 245799999999999999999999999999999999999999999999996 4799999999986 577899999999
Q ss_pred ecCcEEEEEcCC
Q 000529 1070 KRGGREVYVGPL 1081 (1441)
Q Consensus 1070 ~~gG~~v~~G~~ 1081 (1441)
++ |++++.|+.
T Consensus 236 ~~-G~i~~~g~~ 246 (267)
T PRK14237 236 YL-GDLIEYDKT 246 (267)
T ss_pred EC-CEEEEeCCH
Confidence 84 899999986
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=332.98 Aligned_cols=205 Identities=26% Similarity=0.359 Sum_probs=171.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC---ccceEEEEcCCCC-CCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV---PERTAAYISQHDN-HIGE 240 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (1441)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 35899999999999999999999999999999999999997 999999999886432 2457999999863 6778
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1441)
+||+||+.++....+.. .++....++++++.+||++..++.+++
T Consensus 99 ~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 142 (271)
T PRK13632 99 ATVEDDIAFGLENKKVP----------------------------------PKKMKDIIDDLAKKVGMEDYLDKEPQN-- 142 (271)
T ss_pred ccHHHHHHhHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCHHHhhCCccc--
Confidence 99999999865422110 001123467789999999888888765
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~ 400 (1441)
||||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.. .++++|++++|+.+++. .+|++++|++
T Consensus 143 ---LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~-~~d~v~~l~~ 217 (271)
T PRK13632 143 ---LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRK-TRKKTLISITHDMDEAI-LADKVIVFSE 217 (271)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEEechhHHh-hCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998754 34456666777777774 7999999999
Q ss_pred CeEEEEcCHHHHH
Q 000529 401 GQIVYQGPRELVL 413 (1441)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1441)
|+++..|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=325.06 Aligned_cols=195 Identities=26% Similarity=0.389 Sum_probs=166.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC------ccceEEEEcCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1441)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 46999999999999999999999999999999999999987 999999999876532 135799999999899
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
+.+||+||+.++....+.. .++....++++++.+||++..++.+++
T Consensus 91 ~~~t~~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (214)
T cd03292 91 PDRNVYENVAFALEVTGVP----------------------------------PREIRKRVPAALELVGLSHKHRALPAE 136 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCHHHhhCChhh
Confidence 9999999999875432210 001122456789999999888887765
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. . ++++++++|+.+++.+++|++++|
T Consensus 137 -----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 137 -----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-A-GTTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred -----cCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998743 3 566777889999999999999999
Q ss_pred cCCeE
Q 000529 399 SDGQI 403 (1441)
Q Consensus 399 ~~G~i 403 (1441)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=333.29 Aligned_cols=215 Identities=23% Similarity=0.312 Sum_probs=179.5
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.++. +++.+|+|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEec
Confidence 4788998876531 134699999999999999999999999999999999998653 479999999886
Q ss_pred Cc---cccceEEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000529 923 KQ---ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 998 (1441)
.. ..+++.++|++|++. .++.+|++||+.+..... ....++.+..++++++.++|.+..++.+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 234567999999974 566789999998864322 1233444556889999999988777764 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|+++. + ..+|++++|++ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999766 5999999999863 4 57999999985 89999
Q ss_pred EcCC
Q 000529 1078 VGPL 1081 (1441)
Q Consensus 1078 ~G~~ 1081 (1441)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 8875
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=326.58 Aligned_cols=201 Identities=30% Similarity=0.419 Sum_probs=169.2
Q ss_pred CceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc--cccceEEEEec-cCCCCCCC
Q 000529 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ--ETFARISGYCE-QNDIHSPF 943 (1441)
Q Consensus 867 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~-Q~~~~~~~ 943 (1441)
+.+++|+|+|++|++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 456799999999999999999999999999999999998653 47999999986432 23456789997 55667788
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCC
Q 000529 944 VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1023 (1441)
Q Consensus 944 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPT 1023 (1441)
+|++|++.+....+. ...++..+.++++++.+++.+..++.++ .||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999999988654431 2233445567889999999888777654 59999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1024 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1024 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999999764 899999999986 57788999999985 7888764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=333.39 Aligned_cols=204 Identities=26% Similarity=0.379 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc----cceEEEEcCCCC-CCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDN-HIG 239 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~-~~~ 239 (1441)
.++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 35999999999999999999999999999999999999987 9999999998865322 357999999864 467
Q ss_pred CCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccc
Q 000529 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1441)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1441)
..||+||+.|+....+.. ..+....++++++.+||++..++.+++
T Consensus 92 ~~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~~~~- 136 (274)
T PRK13644 92 GRTVEEDLAFGPENLCLP----------------------------------PIEIRKRVDRALAEIGLEKYRHRSPKT- 136 (274)
T ss_pred cchHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCHHHhcCCccc-
Confidence 789999999865432110 001123456789999999888888766
Q ss_pred cccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000529 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1441)
Q Consensus 320 ~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~ 399 (1441)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. .+++|++++|+.+++ ..+|+|++|+
T Consensus 137 ----LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~~tH~~~~~-~~~d~v~~l~ 209 (274)
T PRK13644 137 ----LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE--KGKTIVYITHNLEEL-HDADRIIVMD 209 (274)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHH-hhCCEEEEEE
Confidence 999999999999999999999999999999999999999999998753 356677788888888 5699999999
Q ss_pred CCeEEEEcCHHHHH
Q 000529 400 DGQIVYQGPRELVL 413 (1441)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1441)
+|++++.|+.+++.
T Consensus 210 ~G~i~~~g~~~~~~ 223 (274)
T PRK13644 210 RGKIVLEGEPENVL 223 (274)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999998764
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=325.73 Aligned_cols=202 Identities=25% Similarity=0.319 Sum_probs=169.5
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC--ccceEEEEc-CCCCCCC
Q 000529 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYIS-QHDNHIG 239 (1441)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~-Q~d~~~~ 239 (1441)
..+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|++..... .++.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 3467999999999999999999999999999999999999998 999999998754321 235799998 5566778
Q ss_pred CCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccc
Q 000529 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1441)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1441)
.+||+||+.+.....+.. .++....++.+++.+||++..|+.+++
T Consensus 109 ~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~~~~- 153 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLP----------------------------------PARFKKRLDELSELLDLEELLDTPVRQ- 153 (236)
T ss_pred CCcHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCChhHhcCChhh-
Confidence 999999999865432210 001112356788999999988988876
Q ss_pred cccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000529 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1441)
Q Consensus 320 ~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~ 399 (1441)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .++.+|+.++|+.+++.+++|++++|.
T Consensus 154 ----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 154 ----LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR-ERGTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 999999999999999999999999999999999999999999998754 335667778898999999999999999
Q ss_pred CCeEEEEc
Q 000529 400 DGQIVYQG 407 (1441)
Q Consensus 400 ~G~iv~~G 407 (1441)
+|++++.|
T Consensus 229 ~G~i~~~g 236 (236)
T cd03267 229 KGRLLYDG 236 (236)
T ss_pred CCEEEecC
Confidence 99998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=331.07 Aligned_cols=216 Identities=24% Similarity=0.263 Sum_probs=176.9
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCC---ceEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 919 (1441)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 588999988763 24699999999999999999999999999999999997542 13579999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL----RQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~ 990 (1441)
.++.. ..+++.++|++|++.+++. ||.||+.+....+.. ........+.++++++.+++.+. .+..
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 160 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP--- 160 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87642 1245679999999888774 999999887543311 11223334567889999999642 2333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|+
T Consensus 161 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~ 236 (267)
T PRK14235 161 --GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH 236 (267)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999965 789999999986 4668899999998
Q ss_pred cCcEEEEEcCC
Q 000529 1071 RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ~gG~~v~~G~~ 1081 (1441)
+ |+++..|+.
T Consensus 237 ~-G~i~~~g~~ 246 (267)
T PRK14235 237 L-GNLVEVGDT 246 (267)
T ss_pred C-CEEEEeCCH
Confidence 5 899999875
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=326.79 Aligned_cols=206 Identities=23% Similarity=0.359 Sum_probs=171.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCeeCCCC-----CccceEEEEcCCCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1441)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ ...+|+|.++|+++... ..++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 5899999999999999999999999999999999999863 22389999999987642 1135799999998888
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc----ccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----ICADT 314 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1441)
+ +||+||+.+..+..+... ..+....++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKD---------------------------------KKELDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCC---------------------------------HHHHHHHHHHHHHHcCCCcchhhHhhC
Confidence 8 999999998754322100 001122456789999997 66666
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. + .+++.++|+.+++.+++|+
T Consensus 141 ~~~~-----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 141 SALG-----LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDR 212 (247)
T ss_pred Cccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCE
Confidence 6655 999999999999999999999999999999999999999999998743 3 5777788999999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 000529 395 IILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1441)
+++|++|+++++|+++++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=336.78 Aligned_cols=205 Identities=25% Similarity=0.362 Sum_probs=172.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC-------ccceEEEEcCCCC-
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-------PERTAAYISQHDN- 236 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~- 236 (1441)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 46999999999999999999999999999999999999998 999999999875321 1357999999862
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc-cccccc
Q 000529 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTM 315 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1441)
.+..+||+||+.|+....+.. .++....++++++.+||+ ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS----------------------------------EDEAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhHhhCC
Confidence 344689999999865432110 011123467789999997 577887
Q ss_pred cccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. .+++|+.++|+.+++.++||+|
T Consensus 143 ~~~-----LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 143 PFE-----LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK--AGHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEE
Confidence 776 999999999999999999999999999999999999999999998743 3677778999999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 000529 396 ILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1441)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=328.84 Aligned_cols=206 Identities=23% Similarity=0.320 Sum_probs=174.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC----------------ccceE
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV----------------PERTA 228 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~----------------~~~~~ 228 (1441)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 36999999999999999999999999999999999999998 999999999875321 14579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhHh-cCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcC
Q 000529 229 AYISQHDNHIGEMTVRETLAFAARC-QGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLG 307 (1441)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (1441)
+|++|++.+++.+||.||+.++... .+.. ..+....++++++.+|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~g 135 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGMA----------------------------------RAEAEKRAMELLDMVG 135 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcC
Confidence 9999999889999999999885321 1100 0011123567899999
Q ss_pred CccccccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhh
Q 000529 308 LDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPE 387 (1441)
Q Consensus 308 L~~~~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~ 387 (1441)
|++..+..+.+ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. ..++++++++|+.++
T Consensus 136 l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~ 209 (252)
T TIGR03005 136 LADKADHMPAQ-----LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLAS-EHDLTMLLVTHEMGF 209 (252)
T ss_pred ChhHhhcChhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCCHHH
Confidence 98887777655 999999999999999999999999999999999999999999998754 335677778899999
Q ss_pred HHhhcCeEEEecCCeEEEEcCHHHHH
Q 000529 388 TYNLFDDIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 388 ~~~l~D~vilL~~G~iv~~G~~~~~~ 413 (1441)
+.+++|++++|++|++++.|+.+++.
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999988764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=325.55 Aligned_cols=212 Identities=27% Similarity=0.400 Sum_probs=178.9
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
+++|++++++ ++.+|+|+|+++.+||+++|+||||||||||+++|+|..++ ..|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 4667776652 34699999999999999999999999999999999998653 47999999987643
Q ss_pred c-ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000529 925 E-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003 (1441)
Q Consensus 925 ~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1003 (1441)
. ..++.++|++|++.+++..|+.||+.+....+. .......+.++++++.+++.+..++.. ..||+||+||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 2 234579999999998888999999987654331 222333456789999999987777764 3699999999
Q ss_pred HHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1004 v~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~ 215 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMS-NGKIEQIGSP 215 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEE-CCEEEEecCH
Confidence 99999999999999999999999999999999999998775 899999999986 5778899999998 4899999885
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=321.25 Aligned_cols=198 Identities=23% Similarity=0.291 Sum_probs=167.2
Q ss_pred eeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc-cccceEEEEeccCCCCCCCCCHHHH
Q 000529 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-ETFARISGYCEQNDIHSPFVTVYES 949 (1441)
Q Consensus 871 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~ 949 (1441)
+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 45799999999999999999999999999999998663 47999999987643 2345679999999999988999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHH
Q 000529 950 LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029 (1441)
Q Consensus 950 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~ 1029 (1441)
+.+...... . .....++.++++++.+|+.+..++.+ ..||||||||++|||+|+.+|++|+|||||+|||+.
T Consensus 91 ~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 977542211 1 11223456788999999988777764 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcC
Q 000529 1030 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1441)
Q Consensus 1030 ~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~ 1080 (1441)
++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|+ +|+++..|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~-~g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVS-QGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEE-CCeEEEecC
Confidence 999999999999764 899999999986 4677899999997 489988875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=372.07 Aligned_cols=135 Identities=20% Similarity=0.221 Sum_probs=108.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHh---hCCC
Q 000529 940 HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-RQSLVGLPGVNGLSTEQRKRLTIAVELV---ANPS 1015 (1441)
Q Consensus 940 ~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRv~iA~aL~---~~p~ 1015 (1441)
.+...||.|+|.++..-........++..+.+ ++++.+||.+. .++.+ ..||||||||+.||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 44568999999887542211112233444455 58899999875 56653 469999999999999998 6999
Q ss_pred eeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe-----cCcEEEEEcCCC
Q 000529 1016 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGREVYVGPLG 1082 (1441)
Q Consensus 1016 iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~-----~gG~~v~~G~~~ 1082 (1441)
+|+|||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.+|++++|. .+|+++..|++.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 99999999999999999999999999888999999999986 34 8999999995 368999999874
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=328.24 Aligned_cols=206 Identities=21% Similarity=0.357 Sum_probs=174.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc----cceEEEEcCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1441)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 46999999999999999999999999999999999999988 9999999998765432 3569999999988889
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1441)
+||+||+.+..+.... .. .++....++.+++.+||++..++.+++
T Consensus 93 ~tv~enl~~~~~~~~~---------~~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 137 (241)
T PRK10895 93 LSVYDNLMAVLQIRDD---------LS------------------------AEQREDRANELMEEFHIEHLRDSMGQS-- 137 (241)
T ss_pred CcHHHHHhhhhhcccc---------cC------------------------HHHHHHHHHHHHHHcCCHHHhhcchhh--
Confidence 9999999876432110 00 001123456789999998877777665
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~ 400 (1441)
|||||||||+||++++.+|++|+|||||+|||+.++..+.+.++++.. .+.+|+.++|+.+++.+++|++++|++
T Consensus 138 ---LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiii~sH~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 138 ---LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD--SGLGVLITDHNVRETLAVCERAYIVSQ 212 (241)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEEcCHHHHHHhcCEEEEEeC
Confidence 999999999999999999999999999999999999999999988643 355677788888999999999999999
Q ss_pred CeEEEEcCHHHHH
Q 000529 401 GQIVYQGPRELVL 413 (1441)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1441)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988764
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=343.30 Aligned_cols=211 Identities=27% Similarity=0.438 Sum_probs=177.5
Q ss_pred CceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCc
Q 000529 841 PYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY 920 (1441)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 920 (1441)
+..++|+||++++. +++++|++|||+|++||.+||+|+|||||||++++|.+... .+|+|.+||+
T Consensus 349 ~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~ 413 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQ 413 (591)
T ss_pred CCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCe
Confidence 34699999999875 34569999999999999999999999999999999998664 3799999999
Q ss_pred cCCc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccC
Q 000529 921 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-------RQSLVGL 990 (1441)
Q Consensus 921 ~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~ 990 (1441)
++++ +.+|+.+||||||..++. -||.+|+.|+. .+.+.+ +|-++.+..++.+. .++.||+
T Consensus 414 dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~e----eV~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 414 DIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASDE----EVVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred eHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCHH----HHHHHHHHcCcHHHHHhccccchhhHhh
Confidence 8754 567889999999988774 69999998863 233333 35556666666543 3455776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
.|. .|||||||||+||||++.+|+|+++|||||.||.++..++++.+++. ..|+|+|++.|+.+ ....||+|++|+
T Consensus 484 rG~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~l~ 559 (591)
T KOG0057|consen 484 RGL-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIVLD 559 (591)
T ss_pred ccc-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCEEEEEE
Confidence 554 49999999999999999999999999999999999999999999994 46899999999964 678999999998
Q ss_pred cCcEEEEEcCC
Q 000529 1071 RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ~gG~~v~~G~~ 1081 (1441)
+ |++...|+.
T Consensus 560 n-G~v~e~gth 569 (591)
T KOG0057|consen 560 N-GTVKEYGTH 569 (591)
T ss_pred C-CeeEEeccH
Confidence 6 799999986
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=322.94 Aligned_cols=212 Identities=25% Similarity=0.344 Sum_probs=179.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-C-CCCcceEEEECCeeCCCCCc-------cceEEEEcCC
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD-P-SLKVSGRVTYNGHNMDEFVP-------ERTAAYISQH 234 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~-~-~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~ 234 (1441)
..++++|||+++++||+++|+|.|||||||+.++|.|+++ + ....+|+|.++|.++..+.. .+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 5679999999999999999999999999999999999998 4 33467999999998765543 2479999999
Q ss_pred C--CCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccc-
Q 000529 235 D--NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDIC- 311 (1441)
Q Consensus 235 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~- 311 (1441)
+ .+-|.+||.+.+.-..+...... ..++...++.++|+.+||++.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHH
Confidence 5 67899999999887665421100 112234456788999999863
Q ss_pred --cccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHH
Q 000529 312 --ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETY 389 (1441)
Q Consensus 312 --~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~ 389 (1441)
.+... ..|||||||||.||.||+.+|++|+.|||||+||...+.+|++.|+++.+ ..+++++.|+|+..-+.
T Consensus 145 ~~~~~YP-----helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva 218 (316)
T COG0444 145 RRLKSYP-----HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVA 218 (316)
T ss_pred HHHhhCC-----cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHH
Confidence 34444 45999999999999999999999999999999999999999999999876 56888999999999999
Q ss_pred hhcCeEEEecCCeEEEEcCHHHHH
Q 000529 390 NLFDDIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 390 ~l~D~vilL~~G~iv~~G~~~~~~ 413 (1441)
++||||+||..|+||+.|+.+++.
T Consensus 219 ~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 219 EIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred HhcceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999999875
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=326.36 Aligned_cols=220 Identities=22% Similarity=0.271 Sum_probs=177.3
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCC--Cc-eEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 919 (1441)
.+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 477888887653 2469999999999999999999999999999999999753 21 2479999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 994 (1441)
.++.. ...++.++|++|+..+++.+|+.||+.+...... .....+.++.++++++.+++.+........ .+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKS-NAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC-CcC
Confidence 87632 2346679999999999999999999987643321 112233345678899999986421111111 245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 995 ~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.||++++|. +|+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY-MGD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE-CCE
Confidence 6999999999999999999999999999999999999999999999975 689999999986 5778899999997 489
Q ss_pred EEEEcCC
Q 000529 1075 EVYVGPL 1081 (1441)
Q Consensus 1075 ~v~~G~~ 1081 (1441)
++..|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14256 225 LVECGET 231 (252)
T ss_pred EEEeCCH
Confidence 9999886
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=327.58 Aligned_cols=215 Identities=21% Similarity=0.262 Sum_probs=175.2
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCC-ceEEEEEEEcCccC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGDIRISGYPK 922 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~ 922 (1441)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+.+|+|.++|.+.
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56778877653 24699999999999999999999999999999999997532 24579999999876
Q ss_pred Cc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccCCCCCc
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL----RQSLVGLPGVNG 995 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~~~~~~ 995 (1441)
.. ...++.++|++|++.+++ .|++||+.+....+... ......+++++++++.+++.+. .+.. ...
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~ 142 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLKQN-----ALA 142 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhcCC-----ccc
Confidence 43 234567999999988887 69999998865443110 1123334567889999999532 3332 356
Q ss_pred CCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEE
Q 000529 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1441)
Q Consensus 996 LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~ 1075 (1441)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|++ |++
T Consensus 143 LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i 219 (246)
T PRK14269 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GEL 219 (246)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999864 899999999986 47788999999985 899
Q ss_pred EEEcCC
Q 000529 1076 VYVGPL 1081 (1441)
Q Consensus 1076 v~~G~~ 1081 (1441)
++.|+.
T Consensus 220 ~~~g~~ 225 (246)
T PRK14269 220 IEFGES 225 (246)
T ss_pred EEECCH
Confidence 999875
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=334.71 Aligned_cols=205 Identities=25% Similarity=0.353 Sum_probs=174.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCC-CCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN-HIGEM 241 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1441)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 4899999999999999999999999999999999999998 9999999998764322 356999999863 34568
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1441)
||+||+.++....+.. .++....++.+++.+||.+..++.+++
T Consensus 95 tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 137 (277)
T PRK13652 95 TVEQDIAFGPINLGLD----------------------------------EETVAHRVSSALHMLGLEELRDRVPHH--- 137 (277)
T ss_pred cHHHHHHhHHHHcCCC----------------------------------HHHHHHHHHHHHHHCCChhHhcCCccc---
Confidence 9999998865432110 011123467789999999888888765
Q ss_pred cCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000529 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1441)
Q Consensus 322 rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G 401 (1441)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.. ..+++|+.++|+.+++.+.+|+|++|++|
T Consensus 138 --LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 138 --LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPE-TYGMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999998754 33567777889999999999999999999
Q ss_pred eEEEEcCHHHHH
Q 000529 402 QIVYQGPRELVL 413 (1441)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1441)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998875
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=331.56 Aligned_cols=216 Identities=24% Similarity=0.291 Sum_probs=179.8
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++.++. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 4788999877631 123589999999999999999999999999999999998653 479999999876
Q ss_pred Cc---cccceEEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000529 923 KQ---ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 998 (1441)
.. ...++.++|++|++. +++..|+.+|+.+..... ....+...+.++++++.+++.+..+..+ ..||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 43 234567999999974 677789999998864322 1233444556889999999988777654 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++. .+|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999986 455 4999999985 89999
Q ss_pred EcCCC
Q 000529 1078 VGPLG 1082 (1441)
Q Consensus 1078 ~G~~~ 1082 (1441)
.|+..
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 99863
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=331.83 Aligned_cols=219 Identities=26% Similarity=0.350 Sum_probs=177.2
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc------eEEEEEEE
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YITGDIRI 917 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~------~~~G~i~i 917 (1441)
++++|+++++. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 56778876652 346999999999999999999999999999999999976532 12799999
Q ss_pred cCccCCc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000529 918 SGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGV 993 (1441)
Q Consensus 918 ~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 993 (1441)
+|.+... ...++.++|++|++..++.+|++||+.+....... .....++.++.++++++.+++.+..++.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV----- 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----
Confidence 9987642 23345689999998766679999999875321110 01111233456788999999987776654
Q ss_pred CcCCHHHHHHHHHHHHHh---------hCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhh
Q 000529 994 NGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 1063 (1441)
Q Consensus 994 ~~LSgGqrqRv~iA~aL~---------~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~ 1063 (1441)
..|||||||||+|||+|+ .+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 469999999999999999 599999999999999999999999999999876 899999999986 577789
Q ss_pred CeEEEEecCcEEEEEcCCC
Q 000529 1064 DELFLMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1064 D~vllL~~gG~~v~~G~~~ 1082 (1441)
|++++|++ |++++.|+..
T Consensus 223 d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred CEEEEEEC-CeEEEecCHH
Confidence 99999985 8999999864
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=344.89 Aligned_cols=195 Identities=24% Similarity=0.384 Sum_probs=171.9
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCC-------CccceEEEEcCCCCCCCCCC
Q 000529 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-------VPERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 170 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 242 (1441)
|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++||+|+..+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999998 99999999987531 12467999999999999999
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1441)
|+||+.|+.+.. ....++++++.+||++..++.+++
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~~~---- 128 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYPGS---- 128 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCccc----
Confidence 999999863200 012356789999999888888766
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 GLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~ 402 (1441)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ..+++++.++|+.+++.+++|++++|++|+
T Consensus 129 -LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~-~~g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 129 -LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAR-EINIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999998764 335677778999999999999999999999
Q ss_pred EEEEcCHHHHH
Q 000529 403 IVYQGPRELVL 413 (1441)
Q Consensus 403 iv~~G~~~~~~ 413 (1441)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999999885
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=322.64 Aligned_cols=194 Identities=29% Similarity=0.416 Sum_probs=165.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC------ccceEEEEcCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1441)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 46999999999999999999999999999999999999987 999999999886542 135799999998888
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
+.+||+||+.++....+.. ..+....++++++.+||++..++.+++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 137 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKK----------------------------------EREIQRRVGAALRQVGLEHKADAFPEQ 137 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhhCChhh
Confidence 8999999999875432210 001122456789999998877877765
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+.+++.+++|++++|
T Consensus 138 -----LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 138 -----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-R-GTTVIVATHDLSLVDRVAHRVIIL 210 (214)
T ss_pred -----CCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhcCEEEEe
Confidence 999999999999999999999999999999999999999999998643 3 566777889999999999999999
Q ss_pred cCCe
Q 000529 399 SDGQ 402 (1441)
Q Consensus 399 ~~G~ 402 (1441)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=291.32 Aligned_cols=198 Identities=27% Similarity=0.384 Sum_probs=170.8
Q ss_pred CceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcc------c-cceEEEEeccCCC
Q 000529 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE------T-FARISGYCEQNDI 939 (1441)
Q Consensus 867 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~-~~~~~gyv~Q~~~ 939 (1441)
+...||++|++.|++||.+||+|||||||||||-+|+|...+ .+|+|.+.|++..+. . ..+.+|+|+|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 567899999999999999999999999999999999998764 479999999986431 1 3467999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEE
Q 000529 940 HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1019 (1441)
Q Consensus 940 ~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlL 1019 (1441)
+.|++|..||+.....++.... ........+.|+.+||.+-.+.+. .+|||||+|||+||||++..|+|||.
T Consensus 99 Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~vGLg~Rl~HyP-----~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGESS---ADSRAGAKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHhCcccccccCc-----cccCchHHHHHHHHHHhcCCCCEEec
Confidence 9999999999998888775322 223344678899999998777664 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 1020 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 1020 DEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
||||-+||.++...|.+++-.+.+ .|.|.|++||||. +..-|||.+-|.. |+++.
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~~ 226 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLVE 226 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceecc
Confidence 999999999999999999999865 4999999999985 6778999999975 78764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=334.03 Aligned_cols=217 Identities=24% Similarity=0.283 Sum_probs=180.1
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCce-EEEEEEEcCcc
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGDIRISGYP 921 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~-~~G~i~i~g~~ 921 (1441)
.++++|+++.++. ..+.+|+|||++|++||++||+||||||||||+++|+|..++.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4788898877631 12359999999999999999999999999999999999765321 13899999988
Q ss_pred CCcc---ccceEEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000529 922 KKQE---TFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1441)
Q Consensus 922 ~~~~---~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 997 (1441)
.... ..++.+||++|++. .++..||+||+.|..... ..+.++.++.++++++.++|.+..++.+ +.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCC
Confidence 6432 23567999999974 566789999998764322 2344455567889999999988777764 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEE
Q 000529 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1441)
Q Consensus 998 gGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v 1076 (1441)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++. + +.+|++++|++ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999865 8999999999863 4 57999999985 8999
Q ss_pred EEcCC
Q 000529 1077 YVGPL 1081 (1441)
Q Consensus 1077 ~~G~~ 1081 (1441)
+.|+.
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 99986
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=327.56 Aligned_cols=209 Identities=26% Similarity=0.342 Sum_probs=174.1
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 467888887652 2469999999999999999999999999999999999765 3479999999875
Q ss_pred Cc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCH
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSg 998 (1441)
.. ...++.++|++|++.+++ .|++||+.+....+ . .....++++++.+++. +..++. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 234567999999988776 69999987653321 1 1124577899999996 455554 346999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999764 999999999986 57778999999985 89998
Q ss_pred EcCC
Q 000529 1078 VGPL 1081 (1441)
Q Consensus 1078 ~G~~ 1081 (1441)
.|+.
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=321.94 Aligned_cols=198 Identities=28% Similarity=0.354 Sum_probs=166.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-------cceEEEEcCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNH 237 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1441)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l 99 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFML 99 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEccccc
Confidence 35899999999999999999999999999999999999998 9999999998865432 2469999999888
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccc
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1441)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1441)
++.+||.||+.+.....+.. ..+....++.+++.+||.+..++.++
T Consensus 100 ~~~~tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~ 145 (228)
T PRK10584 100 IPTLNALENVELPALLRGES----------------------------------SRQSRNGAKALLEQLGLGKRLDHLPA 145 (228)
T ss_pred CCCcCHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCHhHhhCChh
Confidence 89999999998865332110 00112345778999999988888776
Q ss_pred cccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000529 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1441)
Q Consensus 318 ~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vil 397 (1441)
+ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++. ..+++|+.++|+.+++ +.+|++++
T Consensus 146 ~-----LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~-~~~d~i~~ 218 (228)
T PRK10584 146 Q-----LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR-EHGTTLILVTHDLQLA-ARCDRRLR 218 (228)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHH-HhCCEEEE
Confidence 6 999999999999999999999999999999999999999999998754 3345666678888777 55999999
Q ss_pred ecCCeEEEE
Q 000529 398 LSDGQIVYQ 406 (1441)
Q Consensus 398 L~~G~iv~~ 406 (1441)
|++|++++.
T Consensus 219 l~~g~i~~~ 227 (228)
T PRK10584 219 LVNGQLQEE 227 (228)
T ss_pred EECCEEEec
Confidence 999999753
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=335.22 Aligned_cols=219 Identities=20% Similarity=0.304 Sum_probs=176.6
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|++++++... .....+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEc
Confidence 478899988764210 0013599999999999999999999999999999999998653 479999999875
Q ss_pred Cc--------cccceEEEEeccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000529 923 KQ--------ETFARISGYCEQNDIH-SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPG 992 (1441)
Q Consensus 923 ~~--------~~~~~~~gyv~Q~~~~-~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~ 992 (1441)
.. ...++.++|++|++.. ....|++||+.|..... ....+...+.++++++.++|. +..++.+
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~---- 148 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP---- 148 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh----
Confidence 31 2245679999999742 22369999998864322 123344445678899999994 5666654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEec
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1441)
Q Consensus 993 ~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~ 1071 (1441)
..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++
T Consensus 149 -~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 149 -FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999999764 899999999986 57788999999985
Q ss_pred CcEEEEEcCC
Q 000529 1072 GGREVYVGPL 1081 (1441)
Q Consensus 1072 gG~~v~~G~~ 1081 (1441)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 899998875
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=333.73 Aligned_cols=219 Identities=21% Similarity=0.290 Sum_probs=179.6
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
-+.++|++++++... ....+.+|+|||++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 377889888764210 0012469999999999999999999999999999999999865 3479999999876
Q ss_pred Cc----cccceEEEEeccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000529 923 KQ----ETFARISGYCEQNDIH-SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1441)
Q Consensus 923 ~~----~~~~~~~gyv~Q~~~~-~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 997 (1441)
.. ...++.+||++|++.. +...||.|++.|..... .....+.+++++++++.+||.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 2245679999999742 33468999998875432 2234445567899999999998888765 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEE
Q 000529 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1441)
Q Consensus 998 gGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v 1076 (1441)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++. .+|++++|++ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 999999999987 344 4999999985 8999
Q ss_pred EEcCC
Q 000529 1077 YVGPL 1081 (1441)
Q Consensus 1077 ~~G~~ 1081 (1441)
+.|+.
T Consensus 224 ~~g~~ 228 (280)
T PRK13633 224 MEGTP 228 (280)
T ss_pred EecCH
Confidence 99986
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=338.31 Aligned_cols=222 Identities=18% Similarity=0.211 Sum_probs=178.1
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCC--ceEEEEEEEcCcc
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGDIRISGYP 921 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~ 921 (1441)
+.++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|.... ....|+|.++|.+
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 6788888776431 1235799999999999999999999999999999999997642 2357999999987
Q ss_pred CCcc---c----cceEEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHHcCCccc---ccc
Q 000529 922 KKQE---T----FARISGYCEQNDI--HSPFVTVYESLFYSAWLRLPPE---VNSETRKMFIEEVMELVELKPL---RQS 986 (1441)
Q Consensus 922 ~~~~---~----~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~---~~~~~~~~~v~~~l~~l~L~~~---~~~ 986 (1441)
+... . .++.++||+|++. +.|.+||.+++.+......... ....+.++.+.++++.+||.+. .+.
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 6421 1 1246999999975 5688999999976432111000 1112345678899999999753 234
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCe
Q 000529 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 1065 (1441)
Q Consensus 987 ~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~ 1065 (1441)
. +..|||||||||+||+||+.+|+||+|||||+|||+.++..+++.|+++.++ |.|||++|||++ .+.+.+|+
T Consensus 155 ~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dr 228 (330)
T PRK15093 155 F-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADK 228 (330)
T ss_pred C-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 3 3579999999999999999999999999999999999999999999999874 999999999986 47788999
Q ss_pred EEEEecCcEEEEEcCC
Q 000529 1066 LFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1066 vllL~~gG~~v~~G~~ 1081 (1441)
+++|.+ |++++.|+.
T Consensus 229 i~vm~~-G~ive~g~~ 243 (330)
T PRK15093 229 INVLYC-GQTVETAPS 243 (330)
T ss_pred EEEEEC-CEEEEECCH
Confidence 999984 899999986
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=343.29 Aligned_cols=199 Identities=25% Similarity=0.426 Sum_probs=172.8
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC-------ccceEEEEcCCCCCCCCCC
Q 000529 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-------PERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 170 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 242 (1441)
|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 899999999999999999999999999999999998 999999999875321 2467999999999999999
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1441)
|+||+.|+.+... . .+....++++++.+||++..|+.+++
T Consensus 92 v~enl~~~~~~~~------------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~~~---- 131 (354)
T TIGR02142 92 VRGNLRYGMKRAR------------P------------------------SERRISFERVIELLGIGHLLGRLPGR---- 131 (354)
T ss_pred HHHHHHHHhhccC------------h------------------------hHHHHHHHHHHHHcCChhHhcCChhh----
Confidence 9999998753210 0 00122457789999999888888776
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 GLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~ 402 (1441)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ..+++++.++|+.+++..++|+|++|++|+
T Consensus 132 -LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~-~~g~tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 132 -LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHA-EFGIPILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999998764 335667778899999999999999999999
Q ss_pred EEEEcCHHHHH
Q 000529 403 IVYQGPRELVL 413 (1441)
Q Consensus 403 iv~~G~~~~~~ 413 (1441)
+++.|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999998875
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=319.45 Aligned_cols=189 Identities=23% Similarity=0.364 Sum_probs=161.6
Q ss_pred eeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC---c----cccceEEEEeccCCCCC
Q 000529 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK---Q----ETFARISGYCEQNDIHS 941 (1441)
Q Consensus 869 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~gyv~Q~~~~~ 941 (1441)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 469999999999999999999999999999999999865 34799999998742 1 12356799999999988
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeC
Q 000529 942 PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021 (1441)
Q Consensus 942 ~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDE 1021 (1441)
+..|++||+.+..... ........+.++++++.+|+.+..++.+ ..||||||||++||+||+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 8899999998865432 1223344566889999999988777764 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEE
Q 000529 1022 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1069 (1441)
Q Consensus 1022 PTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL 1069 (1441)
||+|||+.++..+.+.|+++.++|.|||+++|++. ..+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999877999999999985 34689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=330.78 Aligned_cols=214 Identities=22% Similarity=0.258 Sum_probs=174.7
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCC---ceEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 919 (1441)
.+.++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+. .+.+|+|.++|
T Consensus 13 ~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g 79 (269)
T PRK14259 13 IISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG 79 (269)
T ss_pred eEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588999987763 24699999999999999999999999999999999997542 13579999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 990 (1441)
.+... ...++.++|++|++.+++ .||+||+.+.+..+. .. ...++.++++++.+++.. ..+..
T Consensus 80 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 151 (269)
T PRK14259 80 TDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNES--- 151 (269)
T ss_pred EEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCC---
Confidence 87531 234567999999998887 499999988764331 11 123345677888888742 23333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++++ ++|||++||++. ++.+.||++++|+
T Consensus 152 --~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 227 (269)
T PRK14259 152 --GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFN 227 (269)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEe
Confidence 356999999999999999999999999999999999999999999999964 799999999986 5788999999998
Q ss_pred c----------CcEEEEEcCC
Q 000529 1071 R----------GGREVYVGPL 1081 (1441)
Q Consensus 1071 ~----------gG~~v~~G~~ 1081 (1441)
+ .|++++.|+.
T Consensus 228 ~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 228 AEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred ccccccccccccceEEEeCCH
Confidence 5 3678999886
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=324.68 Aligned_cols=202 Identities=26% Similarity=0.353 Sum_probs=170.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc----cceEEEEcCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1441)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 36999999999999999999999999999999999999998 9999999998765432 3569999999989999
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcC-Cccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLG-LDICADTMVGDE 319 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 319 (1441)
+||+||+.++....+.. . ....+.+++.++ +++..++.+++
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~---------------------------~~~~~~~l~~~~~l~~~~~~~~~~- 131 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR----------S---------------------------RKIPDEIYELFPVLKEMLGRRGGD- 131 (230)
T ss_pred CcHHHHHHHHHHhcCcc----------h---------------------------HHHHHHHHHHHHhHHHHhhCChhh-
Confidence 99999999865432100 0 011344566665 56666776665
Q ss_pred cccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000529 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1441)
Q Consensus 320 ~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~ 399 (1441)
||||||||++||++|+.+|++++|||||+|||+.++.++.+.|+++.+ ..+++++.++|+.+++.+++|+|++|+
T Consensus 132 ----LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 132 ----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA-EGGMAILLVEQYLDFARELADRYYVME 206 (230)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-cCCcEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999998754 335677778899999999999999999
Q ss_pred CCeEEEEcCHHHH
Q 000529 400 DGQIVYQGPRELV 412 (1441)
Q Consensus 400 ~G~iv~~G~~~~~ 412 (1441)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=327.23 Aligned_cols=205 Identities=25% Similarity=0.340 Sum_probs=171.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCC----------------CccceE
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF----------------VPERTA 228 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~----------------~~~~~~ 228 (1441)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 35999999999999999999999999999999999999987 99999999887421 113579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhH-hcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcC
Q 000529 229 AYISQHDNHIGEMTVRETLAFAAR-CQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLG 307 (1441)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (1441)
+|++|++.+++.+||+||+.++.. ..+.. ..+....+.++++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------------------------------KQEARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC----------------------------------HHHHHHHHHHHHHHcC
Confidence 999999988999999999987542 11100 0011234567899999
Q ss_pred Ccccc-ccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChh
Q 000529 308 LDICA-DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAP 386 (1441)
Q Consensus 308 L~~~~-dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~ 386 (1441)
|.+.. +..+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.. .+.+|++++|+.+
T Consensus 141 l~~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~g~tiiivsH~~~ 213 (257)
T PRK10619 141 IDERAQGKYPVH-----LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMG 213 (257)
T ss_pred CChhhhhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHH
Confidence 98753 655544 999999999999999999999999999999999999999999998753 3566777889999
Q ss_pred hHHhhcCeEEEecCCeEEEEcCHHHHH
Q 000529 387 ETYNLFDDIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 387 ~~~~l~D~vilL~~G~iv~~G~~~~~~ 413 (1441)
++.++||+|++|++|++++.|+++++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 999999999999999999999988764
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=320.51 Aligned_cols=225 Identities=23% Similarity=0.326 Sum_probs=181.3
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCC-C-c-eEEEEEEEcCc
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G-G-YITGDIRISGY 920 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~-~-~-~~~G~i~i~g~ 920 (1441)
++++|++.++... .+...+++||||++++||++||+|.|||||||+.++|.|... + + ...|+|.++|.
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 4667777666532 124579999999999999999999999999999999999765 2 3 45689999998
Q ss_pred cCCc---c---c-cceEEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000529 921 PKKQ---E---T-FARISGYCEQNDI--HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP 991 (1441)
Q Consensus 921 ~~~~---~---~-~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 991 (1441)
++-. + . ..+.+++++|++. +.|.+||.+.+.=....+.... ..++.++++.++|+.+||.+.....-.
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~-- 149 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKS-- 149 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhh--
Confidence 6532 1 1 2357999999975 5688999887755444332111 345566778899999999875332222
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 992 ~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
.+.+|||||||||.||.||+.+|++||.||||++||...+++|+++|+++.+ .|.|+|++|||+.. +.++||+|.||.
T Consensus 150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMY 228 (316)
T COG0444 150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMY 228 (316)
T ss_pred CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEE
Confidence 2467999999999999999999999999999999999999999999999986 59999999999974 889999999998
Q ss_pred cCcEEEEEcCCC
Q 000529 1071 RGGREVYVGPLG 1082 (1441)
Q Consensus 1071 ~gG~~v~~G~~~ 1082 (1441)
.|++|+.|+..
T Consensus 229 -aG~iVE~g~~~ 239 (316)
T COG0444 229 -AGRIVEEGPVE 239 (316)
T ss_pred -CcEEEEeCCHH
Confidence 58999999973
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=323.33 Aligned_cols=199 Identities=27% Similarity=0.389 Sum_probs=171.2
Q ss_pred eeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcc-ccceEEEEeccCCCCCCCCCHHHH
Q 000529 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-TFARISGYCEQNDIHSPFVTVYES 949 (1441)
Q Consensus 871 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~E~ 949 (1441)
+|+|+|++|+|||+++|+||||||||||+++|+|..+ +..|+|.++|.+.... ..++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999865 3579999999876432 234579999999999989999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHH
Q 000529 950 LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029 (1441)
Q Consensus 950 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~ 1029 (1441)
+.+..... ........+.+.++++.++|.+..++.+ ..||||||||++|||||+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 1223344456788999999988777764 459999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1030 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1030 ~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
++..+.+.|++++++ |+|||++||++. ++.+.+|++++|++ |++++.|+.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999998765 999999999986 47778999999985 899998875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=325.58 Aligned_cols=203 Identities=26% Similarity=0.342 Sum_probs=171.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCC------C---CccceEEEEcCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE------F---VPERTAAYISQHDN 236 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~------~---~~~~~~~yv~Q~d~ 236 (1441)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 5999999999999999999999999999999999999987 9999999997631 1 11357999999998
Q ss_pred CCCCCCHHHHHHHH-hHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccc
Q 000529 237 HIGEMTVRETLAFA-ARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTM 315 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~-~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1441)
+++.+||+||+.+. ....+.. ..+....++.+++.+||++..++.
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~ 138 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLS----------------------------------KDQALARAEKLLERLRLKPYADRF 138 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhhCC
Confidence 99999999999753 2221110 001122457789999998888887
Q ss_pred cccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
+++ |||||||||+|||+++.+|++++|||||+|||..++..+.+.|+++.. .++++++++|+.+++.+++|++
T Consensus 139 ~~~-----LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~~~~~~d~i 211 (242)
T PRK11124 139 PLH-----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE--TGITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred hhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCEE
Confidence 765 999999999999999999999999999999999999999999998743 3566777889999999999999
Q ss_pred EEecCCeEEEEcCHHHH
Q 000529 396 ILLSDGQIVYQGPRELV 412 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~ 412 (1441)
++|.+|+++++|+++++
T Consensus 212 ~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 212 VYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999998764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=324.32 Aligned_cols=211 Identities=22% Similarity=0.296 Sum_probs=175.4
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|+++.++. + ..|||+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 567888877631 1 138999999999999999999999999999999865 34799999998764
Q ss_pred cc-ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000529 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1441)
Q Consensus 924 ~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1002 (1441)
.. ..++.++|++|++.+++.+|+.||+.+..... ... .+..++.++++++.+|+.+..++.+. .|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLPG-----QLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHH
Confidence 32 12456999999999999999999997753211 111 12335568899999999888787754 69999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1003 Rv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998764 899999999986 57788999999985 899999875
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=324.68 Aligned_cols=201 Identities=27% Similarity=0.346 Sum_probs=168.8
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCccceEEEEcCCCCCCCCCCHHHHH
Q 000529 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETL 247 (1441)
Q Consensus 168 L~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1441)
|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999999987 9999999998765432 348999999889999999999
Q ss_pred HHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCCChh
Q 000529 248 AFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGG 327 (1441)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGG 327 (1441)
.++......+ .. ..+....++.+++.+||++..++.+++ ||||
T Consensus 76 ~~~~~~~~~~--------~~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPD--------LS------------------------KSERRAIVEEHIALVGLTEAADKRPGQ-----LSGG 118 (230)
T ss_pred HHHHHhcccC--------CC------------------------HHHHHHHHHHHHHHcCCHHHHcCChhh-----CCHH
Confidence 8863210000 00 001123456789999999888888766 9999
Q ss_pred hhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEEc
Q 000529 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG 407 (1441)
Q Consensus 328 qrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~iv~~G 407 (1441)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ..+.+|+.++|+.+++.+++|+|++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWE-EHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 99999999999999999999999999999999999999998754 33566777889999999999999999999999988
Q ss_pred CHHH
Q 000529 408 PREL 411 (1441)
Q Consensus 408 ~~~~ 411 (1441)
+..+
T Consensus 198 ~~~~ 201 (230)
T TIGR01184 198 QILE 201 (230)
T ss_pred Ccee
Confidence 6544
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=332.94 Aligned_cols=205 Identities=27% Similarity=0.358 Sum_probs=173.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC----ccceEEEEcCCCC-CCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV----PERTAAYISQHDN-HIG 239 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 239 (1441)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 46999999999999999999999999999999999999998 999999999886422 2467999999863 344
Q ss_pred CCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccc
Q 000529 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1441)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1441)
..||.||+.|+....+.. ..+....++++++.+||++..++.+++
T Consensus 100 ~~~v~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~~~- 144 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIP----------------------------------PEEIRERVDESLKKVGMYEYRRHAPHL- 144 (280)
T ss_pred cccHHHHHHhhHhhcCCC----------------------------------HHHHHHHHHHHHHHCCCHhHhhCCccc-
Confidence 579999999875432210 001123467889999999888888876
Q ss_pred cccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000529 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1441)
Q Consensus 320 ~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~ 399 (1441)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. ..+++|+.++|+.+++.. +|++++|+
T Consensus 145 ----LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tillvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 145 ----LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNK-KYGITIILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecChHHHhc-CCEEEEEE
Confidence 999999999999999999999999999999999999999999998754 335666777888888865 99999999
Q ss_pred CCeEEEEcCHHHHH
Q 000529 400 DGQIVYQGPRELVL 413 (1441)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1441)
+|+++++|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (280)
T PRK13633 219 SGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999998875
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=323.89 Aligned_cols=204 Identities=23% Similarity=0.298 Sum_probs=170.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC----CCCcceEEEECCeeCCCCCc-cceEEEEcCCCC--CCC
Q 000529 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP----SLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDN--HIG 239 (1441)
Q Consensus 167 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~----~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~ 239 (1441)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999988 6 9999999998765432 257999999974 556
Q ss_pred CCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc---ccccccc
Q 000529 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD---ICADTMV 316 (1441)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~---~~~dt~v 316 (1441)
.+|+.||+.+.....+.. . .+....++++++.+||+ +..++.+
T Consensus 78 ~~t~~~~~~~~~~~~~~~---------~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~ 123 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKL---------S-------------------------KQARALILEALEAVGLPDPEEVLKKYP 123 (230)
T ss_pred ccCHHHHHHHHHHHcCcc---------H-------------------------HHHHHHHHHHHHHcCCCchHHHHhCCh
Confidence 789999998764322110 0 01123467789999998 3456666
Q ss_pred ccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEE
Q 000529 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1441)
Q Consensus 317 g~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vi 396 (1441)
++ |||||||||+||++++.+|++|+|||||+|||..+...+.+.|+++.. ..+++|+.++|+.+++..++|+++
T Consensus 124 ~~-----LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~~~~d~i~ 197 (230)
T TIGR02770 124 FQ-----LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ-LFGTGILLITHDLGVVARIADEVA 197 (230)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEE
Confidence 55 999999999999999999999999999999999999999999998754 335677778899999999999999
Q ss_pred EecCCeEEEEcCHHHHH
Q 000529 397 LLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1441)
+|++|+++..|+++++.
T Consensus 198 ~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 198 VMDDGRIVERGTVKEIF 214 (230)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988774
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=368.66 Aligned_cols=207 Identities=25% Similarity=0.386 Sum_probs=165.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1441)
.++|+|+|++++||+.++|+||||||||||+++|+|++ |+ +|+|.+||+++.+... ++.++||+|++.+| +.
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF-~~ 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLP-HG 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCC-Cc
Confidence 36899999999999999999999999999999999999 87 9999999999987654 46899999988666 56
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1441)
||+|||.++..- .+.++..++.... ..+..++ .|++..||.||+. +
T Consensus 438 TI~eNI~~g~~~-------------------------~~~eei~~al~~a------~l~~~i~--~lp~G~dT~vge~-G 483 (588)
T PRK11174 438 TLRDNVLLGNPD-------------------------ASDEQLQQALENA------WVSEFLP--LLPQGLDTPIGDQ-A 483 (588)
T ss_pred CHHHHhhcCCCC-------------------------CCHHHHHHHHHHh------CHHHHHH--hcccccccccccC-C
Confidence 999999986310 0001111111100 0111222 4667789999974 5
Q ss_pred cCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000529 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1441)
Q Consensus 322 rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G 401 (1441)
..||||||||++||||++++|+||+||||||+||+.++..|.+.|+++. .++|+ +.++|.. +..+.||+|++|++|
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~Tv-IiItHrl-~~i~~aD~Iivl~~G 559 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTT-LMVTHQL-EDLAQWDQIWVMQDG 559 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEE-EEEecCh-HHHHhCCEEEEEeCC
Confidence 6699999999999999999999999999999999999999999998753 34454 4455655 456779999999999
Q ss_pred eEEEEcCHHHHHH
Q 000529 402 QIVYQGPRELVLE 414 (1441)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1441)
+++++|+++++.+
T Consensus 560 ~i~e~G~~~eL~~ 572 (588)
T PRK11174 560 QIVQQGDYAELSQ 572 (588)
T ss_pred eEeecCCHHHHHh
Confidence 9999999999864
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=325.51 Aligned_cols=212 Identities=24% Similarity=0.341 Sum_probs=175.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc----cceEEEEcCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1441)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 36999999999999999999999999999999999999998 9999999998765432 2469999999999999
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1441)
+||+||+.++...... .+...... ..++....++++++.+||++..++.+++
T Consensus 92 ~tv~~nl~~~~~~~~~--~~~~~~~~------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (242)
T TIGR03411 92 LTVFENLELALPRDKS--VFASLFFR------------------------LSAEEKDRIEEVLETIGLADEADRLAGL-- 143 (242)
T ss_pred CCHHHHHHHhhhcccc--cccccccc------------------------cHHHHHHHHHHHHHHcCCchhhcCChhh--
Confidence 9999999986432100 00000000 0001123467789999999888887776
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~ 400 (1441)
|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++.. +.+|+.++|+.+++.++||+|++|++
T Consensus 144 ---LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 144 ---LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG---KHSVVVVEHDMEFVRSIADKVTVLHQ 217 (242)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc---CCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998743 35677788999999999999999999
Q ss_pred CeEEEEcCHHHHH
Q 000529 401 GQIVYQGPRELVL 413 (1441)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1441)
|+++++|+.+++.
T Consensus 218 g~~~~~~~~~~~~ 230 (242)
T TIGR03411 218 GSVLAEGSLDQVQ 230 (242)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999987753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=330.99 Aligned_cols=205 Identities=28% Similarity=0.392 Sum_probs=172.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCC--C---ccceEEEEcCCCC-CC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF--V---PERTAAYISQHDN-HI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~-~~ 238 (1441)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... . .++.++|++|++. .+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL 91 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhh
Confidence 35899999999999999999999999999999999999988 99999999987421 1 1357999999863 34
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
..+||+||+.++....+. .+ .+....+..+++.+||++..++.+++
T Consensus 92 ~~~tv~e~i~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~~L~~~~~~~~~~ 137 (275)
T PRK13639 92 FAPTVEEDVAFGPLNLGL----------SK------------------------EEVEKRVKEALKAVGMEGFENKPPHH 137 (275)
T ss_pred ccccHHHHHHHHHHHcCC----------CH------------------------HHHHHHHHHHHHHCCCchhhcCChhh
Confidence 567999999876432110 00 01122456789999999888888876
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+.+++.++||++++|
T Consensus 138 -----LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~-~~til~vtH~~~~~~~~~d~i~~l 210 (275)
T PRK13639 138 -----LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-E-GITIIISTHDVDLVPVYADKVYVM 210 (275)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998753 3 567777899999999999999999
Q ss_pred cCCeEEEEcCHHHHH
Q 000529 399 SDGQIVYQGPRELVL 413 (1441)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1441)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 211 SDGKIIKEGTPKEVF 225 (275)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999998875
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=325.89 Aligned_cols=206 Identities=21% Similarity=0.291 Sum_probs=167.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcceEEEECCeeCCCC-----CccceEEEEcCCCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL--KVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1441)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+. ..+|+|.++|+++... ..++.++|++|++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 58999999999999999999999999999999999998631 1389999999987421 1245799999998777
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCC----cccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL----DICADT 314 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL----~~~~dt 314 (1441)
.+||+||+.++....+... ..+....++.+++.+|+ .+..++
T Consensus 101 -~~tv~eni~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 -LMSIYDNISYGPKIHGTKD---------------------------------KKKLDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred -cCcHHHHHHHHHHhcCCCC---------------------------------HHHHHHHHHHHHHHhCCchhhHHHHhC
Confidence 4999999998754321100 00112235566777777 344566
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
.+++ |||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++. . +++|+.++|+.+++.+++|+
T Consensus 147 ~~~~-----LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 147 NALS-----LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK--E-SYTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred Cccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--c-CCEEEEEeCCHHHHHHhCCE
Confidence 6554 99999999999999999999999999999999999999999999873 2 36677788999999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 000529 395 IILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1441)
+++|++|+++.+|+++++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988774
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=329.52 Aligned_cols=208 Identities=24% Similarity=0.315 Sum_probs=173.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc------cceEEEEcCCC--
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHD-- 235 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d-- 235 (1441)
++.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 356999999999999999999999999999999999999998 9999999998765422 35699999986
Q ss_pred CCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc-ccccc
Q 000529 236 NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADT 314 (1441)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (1441)
.+++.+||+||+.+....... .. ..+....++.+++.+||+ ...+.
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~~---------~~------------------------~~~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLTS---------LD------------------------ESEQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhcC---------CC------------------------HHHHHHHHHHHHHHcCCChhhhhC
Confidence 456789999999875431100 00 001123456789999996 66777
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. ..+++|+.++|+.+.+.+++|+
T Consensus 147 ~~~~-----LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 147 LPRQ-----LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQ-AFGTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred Chhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHHHHhcE
Confidence 6655 999999999999999999999999999999999999999999998754 3356777788999999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 000529 395 IILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1441)
+++|++|++++.|+.+++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999998764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=328.41 Aligned_cols=206 Identities=33% Similarity=0.506 Sum_probs=174.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1441)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 35999999999999999999999999999999999999987 9999999998764332 35699999998887889
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1441)
||+||+.++....+. . . ++....++.+++.+||++..++.+++
T Consensus 92 tv~e~l~~~~~~~~~--~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~--- 134 (258)
T PRK13548 92 TVEEVVAMGRAPHGL--S--------R------------------------AEDDALVAAALAQVDLAHLAGRDYPQ--- 134 (258)
T ss_pred CHHHHHHhhhcccCC--C--------c------------------------HHHHHHHHHHHHHcCCHhHhcCCccc---
Confidence 999999886432110 0 0 00112356789999999888888776
Q ss_pred cCCChhhhhHHHHHHHHh------cCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 322 RGVSGGQKKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 322 rGLSGGqrkRvsia~al~------~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|+++.+. .+.+|++++|+.+++.+++|+|
T Consensus 135 --LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i 211 (258)
T PRK13548 135 --LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE-RGLAVIVVLHDLNLAARYADRI 211 (258)
T ss_pred --CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhcCEE
Confidence 9999999999999999 599999999999999999999999999987533 3566777889999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 000529 396 ILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1441)
++|++|++++.|+++++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=323.99 Aligned_cols=200 Identities=24% Similarity=0.381 Sum_probs=169.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1441)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++ .|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 5899999999999999999999999999999999999998 9999999998754322 357999999987776 69
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc-cccccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTMVGDEMR 321 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 321 (1441)
|+||+.++....+. ....++.+++.+||+ +..++.+++
T Consensus 93 v~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~~--- 131 (241)
T PRK14250 93 VKDNIEYGPMLKGE--------------------------------------KNVDVEYYLSIVGLNKEYATRDVKN--- 131 (241)
T ss_pred HHHHHhcchhhcCc--------------------------------------HHHHHHHHHHHcCCCHHHhhCCccc---
Confidence 99999875322100 011245678899996 456666654
Q ss_pred cCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000529 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1441)
Q Consensus 322 rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G 401 (1441)
|||||||||+||+|++.+|++|+|||||+|||..++..+.+.|+++.. ..+++|+.++|+.+++.+++|+|++|++|
T Consensus 132 --LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 132 --LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKN-KMNLTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hCCCEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999998754 33556777889999999999999999999
Q ss_pred eEEEEcCHHHHH
Q 000529 402 QIVYQGPRELVL 413 (1441)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1441)
+++..|+++++.
T Consensus 209 ~i~~~~~~~~~~ 220 (241)
T PRK14250 209 ILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=342.03 Aligned_cols=194 Identities=25% Similarity=0.389 Sum_probs=168.7
Q ss_pred ceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc-------cccceEEEEeccCCCCCCCCCH
Q 000529 874 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-------ETFARISGYCEQNDIHSPFVTV 946 (1441)
Q Consensus 874 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 946 (1441)
|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 99999999999999999999999999999998653 47999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCC
Q 000529 947 YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026 (1441)
Q Consensus 947 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgL 1026 (1441)
+||+.|+.... ...+.++.++++++.++|.+..++.+ ..|||||||||+|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998865321 12234456889999999998888764 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1027 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1027 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
|+.++..+++.|++++++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999875 899999999986 57788999999985 899999886
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=359.42 Aligned_cols=122 Identities=25% Similarity=0.284 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHHHHHHHHhhCC---CeeEE
Q 000529 944 VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTEQRKRLTIAVELVANP---SIIFM 1019 (1441)
Q Consensus 944 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p---~iLlL 1019 (1441)
+||.|++.|...+. . .....+.++.+||.. ..+..+ ..||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78888888765432 0 112357899999976 345543 469999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe-----cCcEEEEEcCC
Q 000529 1020 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGREVYVGPL 1081 (1441)
Q Consensus 1020 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~-----~gG~~v~~G~~ 1081 (1441)
||||+|||+.+...+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 9999999999999999999999888999999999985 346899999994 47999999986
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=326.16 Aligned_cols=215 Identities=26% Similarity=0.293 Sum_probs=174.6
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCC--Cc-eEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 919 (1441)
.+.++|+++++. ++.+|+|+|++|++||+++|+||||||||||+++|+|... +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 377889887763 2469999999999999999999999999999999999632 21 1379999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 990 (1441)
.+... ..+++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87632 123567999999988877 899999987654321 1122333456788899998753 23333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999865 699999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000529 1071 RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ~gG~~v~~G~~ 1081 (1441)
+ |++++.|+.
T Consensus 222 ~-G~i~~~g~~ 231 (252)
T PRK14239 222 D-GDLIEYNDT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 899999875
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=321.82 Aligned_cols=196 Identities=24% Similarity=0.355 Sum_probs=167.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc------cceEEEEcCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDNHI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1441)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 46999999999999999999999999999999999999988 9999999998764321 35799999998888
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
+.+||+||+.+.....+.. .++....++.+++.+||.+..++.+++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 137 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGAS----------------------------------GDDIRRRVSAALDKVGLLDKAKNFPIQ 137 (222)
T ss_pred ccccHHHHHHhHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhhCCchh
Confidence 9999999999865432210 001112356688999998877877765
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++.. .++++++++|+.+++..++|+|++|
T Consensus 138 -----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l 210 (222)
T PRK10908 138 -----LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR--VGVTVLMATHDIGLISRRSYRMLTL 210 (222)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998743 3567777899999999999999999
Q ss_pred cCCeEE
Q 000529 399 SDGQIV 404 (1441)
Q Consensus 399 ~~G~iv 404 (1441)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999985
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=325.80 Aligned_cols=215 Identities=20% Similarity=0.232 Sum_probs=175.8
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc---eEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 919 (1441)
-+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 467888887652 246999999999999999999999999999999999975421 2479999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 990 (1441)
.+... ...++.++|++|++.+++ .|++||+.|....... ......+++++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87632 123567999999998887 8999999886543211 122344456788999998853 23333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
...||+|||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|+
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 356999999999999999999999999999999999999999999999876 699999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000529 1071 RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ~gG~~v~~G~~ 1081 (1441)
+ |++++.|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14270 221 M-GDLIEFNKT 230 (251)
T ss_pred C-CeEEEeCCH
Confidence 5 899999886
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=325.29 Aligned_cols=215 Identities=21% Similarity=0.287 Sum_probs=174.9
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc---eEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 919 (1441)
.+.++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+.. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 367888887653 236999999999999999999999999999999999964311 2479999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 990 (1441)
.+... ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.++++++.+++.+ ..++.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87642 124567999999988887 8999999886543211 123334556788889988753 23333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.+|++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999854 899999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000529 1071 RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ~gG~~v~~G~~ 1081 (1441)
+ |+++..|+.
T Consensus 220 ~-G~i~~~~~~ 229 (250)
T PRK14240 220 N-GEIVEFGDT 229 (250)
T ss_pred C-CEEEEeCCH
Confidence 5 899998875
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=328.03 Aligned_cols=221 Identities=23% Similarity=0.311 Sum_probs=176.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc----cceEEEEcCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1441)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 46999999999999999999999999999999999999998 9999999998765432 2358999999999999
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1441)
+||+||+.++....... +...... +. + .. .....+....++.+++.+||++..++.+++
T Consensus 95 ~tv~enl~~~~~~~~~~---~~~~~~~------~~-~--~~-------~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-- 153 (255)
T PRK11300 95 MTVIENLLVAQHQQLKT---GLFSGLL------KT-P--AF-------RRAESEALDRAATWLERVGLLEHANRQAGN-- 153 (255)
T ss_pred CcHHHHHHHhhhccccc---hhhhhhc------cc-c--cc-------ccchhHHHHHHHHHHHhCChhhhhhCChhh--
Confidence 99999999864321000 0000000 00 0 00 000011223466789999998888887766
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~ 400 (1441)
|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+ ..+++|+.++|+.+++.+++|++++|++
T Consensus 154 ---LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 154 ---LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN-EHNVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHh-hcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998754 3356777788999999999999999999
Q ss_pred CeEEEEcCHHHHH
Q 000529 401 GQIVYQGPRELVL 413 (1441)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1441)
|++++.|+++++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999988764
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=341.22 Aligned_cols=191 Identities=24% Similarity=0.377 Sum_probs=167.2
Q ss_pred ceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc-------cccceEEEEeccCCCCCCCCCH
Q 000529 874 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-------ETFARISGYCEQNDIHSPFVTV 946 (1441)
Q Consensus 874 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 946 (1441)
|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.+||++|+..++|.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 89999999999999999999999999999998653 47999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCC
Q 000529 947 YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026 (1441)
Q Consensus 947 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgL 1026 (1441)
+||+.|+.. ...++.++++++.+||.+..++.+ ..|||||||||+|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 112345789999999988877764 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCC
Q 000529 1027 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1027 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1082 (1441)
|+.++..+++.|+++.++ |+|||++||+++ ++...+|++++|++ |+++..|+..
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 214 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLE 214 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHH
Confidence 999999999999999865 899999999986 67889999999985 8999999863
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=319.02 Aligned_cols=191 Identities=25% Similarity=0.377 Sum_probs=162.8
Q ss_pred ceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc-------cccceEEEEeccCCCCCCCCCH
Q 000529 874 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-------ETFARISGYCEQNDIHSPFVTV 946 (1441)
Q Consensus 874 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 946 (1441)
|||+++++ |+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 99999999999999999999998653 47999999987531 1235579999999988889999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCC
Q 000529 947 YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026 (1441)
Q Consensus 947 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgL 1026 (1441)
.||+.+..... .....++.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 22334456788999999987766654 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1027 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1027 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
|+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999875 899999999986 46678999999985 7887765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=327.14 Aligned_cols=215 Identities=21% Similarity=0.264 Sum_probs=175.7
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCC--Cc-eEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 919 (1441)
.+.++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 478899887653 2469999999999999999999999999999999999754 21 1479999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL----RQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~ 990 (1441)
.+... ...++.+||++|++.+++. |++||+.+....+. ....++..+.++++++.+++.+. .+..
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--- 152 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ--- 152 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCC---
Confidence 87632 1345679999999888875 99999987644321 11223344567888999998542 2333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
...||||||||++|||+|+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 153 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 228 (259)
T PRK14274 153 --ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFY 228 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 356999999999999999999999999999999999999999999999865 799999999986 5778899999997
Q ss_pred cCcEEEEEcCC
Q 000529 1071 RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ~gG~~v~~G~~ 1081 (1441)
+ |+++..|+.
T Consensus 229 ~-G~i~~~g~~ 238 (259)
T PRK14274 229 M-GELVECNDT 238 (259)
T ss_pred C-CEEEEECCH
Confidence 5 899999885
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=359.02 Aligned_cols=208 Identities=29% Similarity=0.407 Sum_probs=176.7
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++||+|+++. +++++|+|+|++|+|||.+||+|+||||||||+|+|+|..++ .+|+|.+||.+.
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEc
Confidence 6899999998842 234699999999999999999999999999999999998763 489999999987
Q ss_pred Cc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-------RQSLVGLPG 992 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 992 (1441)
++ ..+++.+|||+|++.+++ -|++||+.++. + .+ ++.++++++..++.+. .|+.+|..|
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G 586 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGG 586 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 54 456788999999999886 59999997642 1 22 2346778888887654 356666544
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 993 ~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|+++|+++ ..+.+|+|++|++
T Consensus 587 -~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~- 659 (686)
T TIGR03797 587 -GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA- 659 (686)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999886 589999999985 5677999999985
Q ss_pred cEEEEEcCC
Q 000529 1073 GREVYVGPL 1081 (1441)
Q Consensus 1073 G~~v~~G~~ 1081 (1441)
|+++..|+.
T Consensus 660 G~iv~~G~~ 668 (686)
T TIGR03797 660 GRVVQQGTY 668 (686)
T ss_pred CEEEEECCH
Confidence 899999985
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=336.48 Aligned_cols=215 Identities=17% Similarity=0.190 Sum_probs=173.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcceEEEECCeeCCCCCc-------cceEEEEcCCC
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL-KVSGRVTYNGHNMDEFVP-------ERTAAYISQHD 235 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 235 (1441)
...+|+|||++|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..... ++.++||+|++
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 3569999999999999999999999999999999999986411 128999999999865432 23699999987
Q ss_pred C--CCCCCCHHHHHHHHhHhcCC-CchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc--
Q 000529 236 N--HIGEMTVRETLAFAARCQGV-GTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI-- 310 (1441)
Q Consensus 236 ~--~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-- 310 (1441)
. +.+.+||.+++.+....... +..+ + ...+....+.++|+.+||++
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~----------------~-------------~~~~~~~~~~~~L~~~gL~~~~ 149 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWW----------------Q-------------RFGWRKRRAIELLHRVGIKDHK 149 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhcccccc----------------c-------------cHHHHHHHHHHHHHHCCCCChH
Confidence 4 57889999999864321100 0000 0 00011234677899999975
Q ss_pred -ccccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHH
Q 000529 311 -CADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETY 389 (1441)
Q Consensus 311 -~~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~ 389 (1441)
..++.+.+ |||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.. ..+.++++++|+..++.
T Consensus 150 ~~~~~~p~~-----LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~g~tii~itHdl~~v~ 223 (330)
T PRK15093 150 DAMRSFPYE-----LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQ-NNNTTILLISHDLQMLS 223 (330)
T ss_pred HHHhCCchh-----CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHH
Confidence 34555554 999999999999999999999999999999999999999999998754 34667888999999999
Q ss_pred hhcCeEEEecCCeEEEEcCHHHHH
Q 000529 390 NLFDDIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 390 ~l~D~vilL~~G~iv~~G~~~~~~ 413 (1441)
+++|+|++|.+|++++.|+.+++.
T Consensus 224 ~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 224 QWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999998774
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=312.89 Aligned_cols=190 Identities=49% Similarity=0.851 Sum_probs=161.5
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCC--CCceEEEEEEEcCc
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGDIRISGY 920 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~--~~~~~~G~i~i~g~ 920 (1441)
.+.++|+++.++... ....+.+|+|+|+++++||+++|+||||||||||+++|+|.. . +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 477889888764210 001246999999999999999999999999999999999986 5 45899999998
Q ss_pred cCCccccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000529 921 PKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1441)
Q Consensus 921 ~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1000 (1441)
+......++.++|++|++.+++.+|++||+.+...+. .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8754345677999999998888999999997643110 399999
Q ss_pred HHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1001 rqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++.++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999999877999999999986457788999999985 7888764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=325.67 Aligned_cols=219 Identities=20% Similarity=0.252 Sum_probs=173.6
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCC--c-eEEEEEEEcCc
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGDIRISGY 920 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g~ 920 (1441)
-+++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|.... . +.+|+|.++|.
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 35667776552 24699999999999999999999999999999999997541 1 24799999998
Q ss_pred cCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000529 921 PKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG 995 (1441)
Q Consensus 921 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 995 (1441)
+... ...++.++|++|++.+++. |+.||+.+....+. ........++.++++++.+++.+........ .+..
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-Chhh
Confidence 7532 1245679999999888875 99999987643331 1112233445678899999996522111111 1356
Q ss_pred CCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEE
Q 000529 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1441)
Q Consensus 996 LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~ 1075 (1441)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i 226 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRI 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999985 4899999999986 57788999999985 899
Q ss_pred EEEcCC
Q 000529 1076 VYVGPL 1081 (1441)
Q Consensus 1076 v~~G~~ 1081 (1441)
++.|+.
T Consensus 227 ~~~~~~ 232 (251)
T PRK14244 227 VEYNTT 232 (251)
T ss_pred EEeCCH
Confidence 998875
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=329.10 Aligned_cols=223 Identities=20% Similarity=0.257 Sum_probs=178.9
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|+++++..+.. +...+.+++|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 788999887742100 0000124699999999999999999999999999999999998763 4799999998764
Q ss_pred cc---ccceEEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCC
Q 000529 924 QE---TFARISGYCEQNDI--HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLS 997 (1441)
Q Consensus 924 ~~---~~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LS 997 (1441)
.. ..++.++|++|++. +.+.+|+.|++.+...... ........+.++++++.++|. +..+..+ ..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-----HMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hhcC
Confidence 21 22356999999875 5677899999987654432 122334455688999999994 5555543 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEE
Q 000529 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1441)
Q Consensus 998 gGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v 1076 (1441)
||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.||++++|++ |+++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~ 229 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVV 229 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 899999999986 57778999999984 8999
Q ss_pred EEcCC
Q 000529 1077 YVGPL 1081 (1441)
Q Consensus 1077 ~~G~~ 1081 (1441)
+.|+.
T Consensus 230 ~~~~~ 234 (267)
T PRK15112 230 ERGST 234 (267)
T ss_pred ecCCH
Confidence 88875
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=329.14 Aligned_cols=204 Identities=22% Similarity=0.300 Sum_probs=171.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCC-CCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN-HIGEM 241 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1441)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 5899999999999999999999999999999999999988 9999999998764322 357999999874 67888
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1441)
||++|+.|.....+.. ..+....++.+++.+||.+..++.+++
T Consensus 100 ~v~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 142 (269)
T PRK13648 100 IVKYDVAFGLENHAVP----------------------------------YDEMHRRVSEALKQVDMLERADYEPNA--- 142 (269)
T ss_pred cHHHHHHhhHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhhCCccc---
Confidence 9999998875432110 001122456789999998888877765
Q ss_pred cCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000529 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1441)
Q Consensus 322 rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G 401 (1441)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.. ..+++|+.++|+.+++.. +|+|++|++|
T Consensus 143 --LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tiiivtH~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 143 --LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKS-EHNITIISITHDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCchHHhc-CCEEEEEECC
Confidence 999999999999999999999999999999999999999999998754 335566667788888875 9999999999
Q ss_pred eEEEEcCHHHHH
Q 000529 402 QIVYQGPRELVL 413 (1441)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1441)
++++.|+++++.
T Consensus 219 ~i~~~g~~~~~~ 230 (269)
T PRK13648 219 TVYKEGTPTEIF 230 (269)
T ss_pred EEEEecCHHHHh
Confidence 999999998764
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=358.70 Aligned_cols=218 Identities=25% Similarity=0.336 Sum_probs=183.1
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|++++++ ++.+|+|+||+|++||++||+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 77888887652 34699999999999999999999999999999999998653 4799999998763
Q ss_pred cc----ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000529 924 QE----TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 924 ~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 998 (1441)
.. ..++.++|++|++.+++.+||+|++.++...+.. ...+.++.+++++++++.+||.+..++.++ .|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCH
Confidence 21 1235699999999889999999999886432211 112233344568899999999988777654 5999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~ 1078 (1441)
||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++.|.|||++||+++ ++.+.||++++|++ |+++..
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~ 222 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 57788999999985 899999
Q ss_pred cCCCC
Q 000529 1079 GPLGH 1083 (1441)
Q Consensus 1079 G~~~~ 1083 (1441)
|+..+
T Consensus 223 ~~~~~ 227 (501)
T PRK10762 223 REVAD 227 (501)
T ss_pred cCcCc
Confidence 98764
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=328.28 Aligned_cols=210 Identities=25% Similarity=0.388 Sum_probs=174.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1441)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++.+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 36999999999999999999999999999999999999987 9999999998754322 35699999998888999
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1441)
||.||+.++..... +. . +. + ..+....++.+++.+||++..++.+++
T Consensus 101 tv~e~l~~~~~~~~-~~-------~-------~~-~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 147 (265)
T PRK10575 101 TVRELVAIGRYPWH-GA-------L-------GR-F--------------GAADREKVEEAISLVGLKPLAHRLVDS--- 147 (265)
T ss_pred cHHHHHHhCccccc-cc-------c-------cC-C--------------CHHHHHHHHHHHHHcCCHHHhcCCccc---
Confidence 99999987532100 00 0 00 0 000123456789999998888888776
Q ss_pred cCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000529 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1441)
Q Consensus 322 rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G 401 (1441)
|||||||||+||+||+.+|++|+|||||+|||..++..+.+.|++++. ..+++|+.++|+.+++.+++|+|++|++|
T Consensus 148 --LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~-~~~~tiii~sH~~~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 148 --LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ-ERGLTVIAVLHDINMAARYCDYLVALRGG 224 (265)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999998754 33566777889999999999999999999
Q ss_pred eEEEEcCHHHHH
Q 000529 402 QIVYQGPRELVL 413 (1441)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1441)
++++.|+.+++.
T Consensus 225 ~i~~~~~~~~~~ 236 (265)
T PRK10575 225 EMIAQGTPAELM 236 (265)
T ss_pred eEEEecCHHHhc
Confidence 999999987753
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=326.18 Aligned_cols=216 Identities=22% Similarity=0.284 Sum_probs=176.9
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc-e--EEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--ITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~--~~G~i~i~g 919 (1441)
.+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+.. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478889887763 246999999999999999999999999999999999975432 1 479999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 990 (1441)
.+... ...++.++|++|++.+++ .|++||+.+....+. .....+.++.++++++.+++.+ ..+..
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87532 123557999999998887 899999987654332 1122334456788899998843 33333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|+
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 456999999999999999999999999999999999999999999999865 699999999987 5788999999997
Q ss_pred c----CcEEEEEcCC
Q 000529 1071 R----GGREVYVGPL 1081 (1441)
Q Consensus 1071 ~----gG~~v~~G~~ 1081 (1441)
+ .|++++.|+.
T Consensus 224 ~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 224 TDESRIGQMVEFGVT 238 (259)
T ss_pred ccCCCCceEEEeCCH
Confidence 3 4899999986
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=326.86 Aligned_cols=206 Identities=19% Similarity=0.293 Sum_probs=168.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCeeCCCCC-----ccceEEEEcCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEFV-----PERTAAYISQHDNH 237 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1441)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|. ...+|+|.++|+++.... .++.++|++|++.+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 35899999999999999999999999999999999998751 012899999999875321 23569999999877
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc----cccc
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----ICAD 313 (1441)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 313 (1441)
++ +||+||+.|+.+..+.. . .+....++++++.+|+. +..+
T Consensus 105 ~~-~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGAN----------K------------------------KDLDGVVENALRSAALWDETSDRLK 149 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCCcchhhhhc
Confidence 77 89999999875432210 0 00112356678888884 3455
Q ss_pred cccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcC
Q 000529 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1441)
Q Consensus 314 t~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D 393 (1441)
+.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. . +.+|+.++|+.+++.+++|
T Consensus 150 ~~~~~-----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~--~-~~tiiivsH~~~~~~~~~d 221 (258)
T PRK14268 150 SPALS-----LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK--K-DYTIVIVTHNMQQAARISD 221 (258)
T ss_pred CChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--h-CCEEEEEECCHHHHHHhCC
Confidence 55554 99999999999999999999999999999999999999999999873 2 4677778899999999999
Q ss_pred eEEEecCCeEEEEcCHHHHH
Q 000529 394 DIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1441)
+|++|++|++++.|+++++.
T Consensus 222 ~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 222 YTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=329.93 Aligned_cols=205 Identities=24% Similarity=0.353 Sum_probs=170.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC-------ccceEEEEcCCCC-
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-------PERTAAYISQHDN- 236 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~- 236 (1441)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35999999999999999999999999999999999999998 999999999875421 1356999999862
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc-cccccc
Q 000529 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTM 315 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1441)
.+...||+||+.+.....+.. . ++....++.+++.+||. ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 142 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVS----------Q------------------------EEAEALAREKLALVGISESLFEKN 142 (280)
T ss_pred hhccccHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 333579999999865332110 0 01122356788899997 456766
Q ss_pred cccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|++++|+.+++.+++|++
T Consensus 143 ~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~~~~~~~~d~i 215 (280)
T PRK13649 143 PFE-----LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-S-GMTIVLVTHLMDDVANYADFV 215 (280)
T ss_pred ccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhCCEE
Confidence 665 999999999999999999999999999999999999999999998753 3 567777889999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 000529 396 ILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1441)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=319.04 Aligned_cols=194 Identities=30% Similarity=0.441 Sum_probs=163.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCC-CCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN-HIGE 240 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 240 (1441)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 46999999999999999999999999999999999999988 9999999998764322 357999999864 4678
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1441)
+||+||+.++....+.. ..+....++.+++.+||++..++.+++
T Consensus 91 ~t~~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 134 (211)
T cd03225 91 PTVEEEVAFGLENLGLP----------------------------------EEEIEERVEEALELVGLEGLRDRSPFT-- 134 (211)
T ss_pred CcHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCcHhhhcCCccc--
Confidence 99999998865322110 000112356788999998877877765
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~ 400 (1441)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|+.+++.+++|+|++|++
T Consensus 135 ---LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 135 ---LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-E-GKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999998754 3 56777789999999999999999999
Q ss_pred Ce
Q 000529 401 GQ 402 (1441)
Q Consensus 401 G~ 402 (1441)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=330.48 Aligned_cols=208 Identities=25% Similarity=0.340 Sum_probs=172.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCC-CCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN-HIGE 240 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 240 (1441)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+...+|+|.++|.++..... ++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 358999999999999999999999999999999999998872123999999998864322 357999999864 6778
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1441)
+||+||+.|..+..+.. .++...+++.+++.+||++..++.+.+
T Consensus 100 ~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~~~-- 143 (282)
T PRK13640 100 ATVGDDVAFGLENRAVP----------------------------------RPEMIKIVRDVLADVGMLDYIDSEPAN-- 143 (282)
T ss_pred CCHHHHHHhhHHhCCCC----------------------------------HHHHHHHHHHHHHHCCChhHhcCCccc--
Confidence 99999999865432110 011223467789999999888887765
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~ 400 (1441)
|||||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++.. ..+++|++++|+.+++ ..+|++++|++
T Consensus 144 ---LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tvli~tH~~~~~-~~~d~i~~l~~ 218 (282)
T PRK13640 144 ---LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKK-KNNLTVISITHDIDEA-NMADQVLVLDD 218 (282)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHH-HhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998754 3356666778888887 57999999999
Q ss_pred CeEEEEcCHHHHH
Q 000529 401 GQIVYQGPRELVL 413 (1441)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1441)
|++++.|+++++.
T Consensus 219 G~i~~~g~~~~~~ 231 (282)
T PRK13640 219 GKLLAQGSPVEIF 231 (282)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998875
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=328.64 Aligned_cols=205 Identities=27% Similarity=0.345 Sum_probs=171.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCC--CC---ccceEEEEcCCCC-CC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE--FV---PERTAAYISQHDN-HI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~--~~---~~~~~~yv~Q~d~-~~ 238 (1441)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. .. .++.++|++|++. .+
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 35899999999999999999999999999999999999998 9999999998742 11 1357999999864 34
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
...|+.||+.+.....+.. ..+....++.+++.+||++..++.+++
T Consensus 91 ~~~~~~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVP----------------------------------EAEITRRVDEALTLVDAQHFRHQPIQC 136 (271)
T ss_pred ccccHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCHhHhcCCchh
Confidence 5678999998864432110 001112356789999998888887766
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++|+.+++.+++|++++|
T Consensus 137 -----LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tii~vtH~~~~~~~~~d~i~~l 209 (271)
T PRK13638 137 -----LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-Q-GNHVIISSHDIDLIYEISDAVYVL 209 (271)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998753 3 456777889999999999999999
Q ss_pred cCCeEEEEcCHHHHH
Q 000529 399 SDGQIVYQGPRELVL 413 (1441)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1441)
++|++++.|+++++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 210 RQGQILTHGAPGEVF 224 (271)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=334.33 Aligned_cols=221 Identities=19% Similarity=0.228 Sum_probs=178.4
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCC---ceEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 919 (1441)
.+.++|+++.+.. +.+.+|+|||++|++||++||+||||||||||+++|+|.... .+..|+|.++|
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 5889999987642 224699999999999999999999999999999999997531 23579999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 994 (1441)
.++.. ...++.++||+|++.+++ .|++||+.|+.... .....+..++.++++++.++|.+..+..++.. ..
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~-~~ 224 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN--GINDRKILEKIVEKSLKSAALWDEVKDDLDKA-GN 224 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc--CCChHHHHHHHHHHHHHHcCCcchhhhhhhCC-cc
Confidence 98742 234667999999998775 79999999864321 11112223445678889988854333334332 45
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 995 ~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
.||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||++. .+.+.+|++++|++ |+
T Consensus 225 ~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G~ 301 (329)
T PRK14257 225 ALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-GW 301 (329)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999875 699999999986 46777999999985 89
Q ss_pred EEEEcCC
Q 000529 1075 EVYVGPL 1081 (1441)
Q Consensus 1075 ~v~~G~~ 1081 (1441)
++..|++
T Consensus 302 i~e~g~~ 308 (329)
T PRK14257 302 IEEAGET 308 (329)
T ss_pred EEEeCCH
Confidence 9999987
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=324.11 Aligned_cols=215 Identities=23% Similarity=0.251 Sum_probs=174.5
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc---eEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 919 (1441)
.+.++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 367788877652 346999999999999999999999999999999999975431 3479999999
Q ss_pred ccCCc----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000529 920 YPKKQ----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGLP 991 (1441)
Q Consensus 920 ~~~~~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 991 (1441)
.+... ...++.++|++|++.+++ .||.||+.+...... ....+..++.+.++++.+++.+ ..+..
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 142 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKSH---- 142 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhcC----
Confidence 87531 234567999999998887 899999987643321 1122333456778888888754 22333
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEec
Q 000529 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1441)
Q Consensus 992 ~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~ 1071 (1441)
...|||||||||+|||||+.+|+||+|||||+|||+.++..+++.|+++++ ++|||++||++. ++.+.+|++++|++
T Consensus 143 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~ 219 (249)
T PRK14253 143 -AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM 219 (249)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 346999999999999999999999999999999999999999999999975 699999999986 57788999999985
Q ss_pred CcEEEEEcCC
Q 000529 1072 GGREVYVGPL 1081 (1441)
Q Consensus 1072 gG~~v~~G~~ 1081 (1441)
|+++..|+.
T Consensus 220 -G~i~~~g~~ 228 (249)
T PRK14253 220 -GELVEHDDT 228 (249)
T ss_pred -CEEEEeCCH
Confidence 899998875
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=323.36 Aligned_cols=203 Identities=23% Similarity=0.301 Sum_probs=165.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCcceEEEECCeeCCCC--C---ccceEEEEcCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PSLKVSGRVTYNGHNMDEF--V---PERTAAYISQHD 235 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~-----~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d 235 (1441)
++|+|+|+++++||+++|+|||||||||||++|+|..+ |+ +|+|.++|+++... . .++.++|++|++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 96 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV---EGEILLDGENIYDPHVDVVELRRRVGMVFQKP 96 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCC---ceEEEECCEEccccccCHHHHhhcEEEEecCC
Confidence 58999999999999999999999999999999999864 34 89999999987532 1 135799999998
Q ss_pred CCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc----c
Q 000529 236 NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----C 311 (1441)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~ 311 (1441)
.+++ .||+||+.++....+.... ++....++.+++.+||.+ .
T Consensus 97 ~~~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 142 (253)
T PRK14242 97 NPFP-KSIFENVAYGLRVNGVKDK---------------------------------AYLAERVERSLRHAALWDEVKDR 142 (253)
T ss_pred CCCc-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHH
Confidence 7777 5999999987543221000 001123556788888854 2
Q ss_pred cccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhh
Q 000529 312 ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL 391 (1441)
Q Consensus 312 ~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l 391 (1441)
.++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. . +.+|+.++|+.+++.++
T Consensus 143 ~~~~~~-----~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~-~~tvii~tH~~~~~~~~ 214 (253)
T PRK14242 143 LHESAL-----GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK--A-RYTIIIVTHNMQQAARV 214 (253)
T ss_pred hhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--c-CCeEEEEEecHHHHHHh
Confidence 344444 499999999999999999999999999999999999999999999873 2 35677788999999999
Q ss_pred cCeEEEecCCeEEEEcCHHHHH
Q 000529 392 FDDIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 392 ~D~vilL~~G~iv~~G~~~~~~ 413 (1441)
+|+|++|++|+++..|+++++.
T Consensus 215 ~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 215 SDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999988763
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=329.49 Aligned_cols=216 Identities=23% Similarity=0.301 Sum_probs=179.6
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.++. .....+|+|||+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 4788999887631 012359999999999999999999999999999999999876 3579999999876
Q ss_pred Cc---cccceEEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000529 923 KQ---ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 998 (1441)
.. ...++.+||++|++. .++..||.||+.+..... ....++..++++++++.+||.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234567999999974 566789999998765422 1233444456889999999988777654 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++. + ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 9999999999863 4 46999999985 79999
Q ss_pred EcCC
Q 000529 1078 VGPL 1081 (1441)
Q Consensus 1078 ~G~~ 1081 (1441)
.|+.
T Consensus 221 ~g~~ 224 (277)
T PRK13642 221 EAAP 224 (277)
T ss_pred eCCH
Confidence 9875
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=321.80 Aligned_cols=201 Identities=25% Similarity=0.321 Sum_probs=166.6
Q ss_pred eeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc--eEEEEEEEcCccCCcccc-ceEEEEeccCCC--CCCCCC
Q 000529 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGDIRISGYPKKQETF-ARISGYCEQNDI--HSPFVT 945 (1441)
Q Consensus 871 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~gyv~Q~~~--~~~~lT 945 (1441)
+|+|||+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+...... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 578999999999999999999999999999999986531 157999999987654322 357999999974 556789
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc---ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCC
Q 000529 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK---PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1022 (1441)
Q Consensus 946 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~---~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEP 1022 (1441)
+.|++.+...... ...+..++.++++++.+++. +..++.+ ..|||||||||+|||||+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977643321 11233445688999999997 3445543 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1023 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1023 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999764 899999999986 57778999999985 899998875
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=323.32 Aligned_cols=214 Identities=22% Similarity=0.312 Sum_probs=174.9
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc---eEEEEEEEcCc
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISGY 920 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~ 920 (1441)
++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 67888887652 246999999999999999999999999999999999975421 25799999998
Q ss_pred cCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccCC
Q 000529 921 PKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL----RQSLVGLP 991 (1441)
Q Consensus 921 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~~ 991 (1441)
+... ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.+. .+..
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 143 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKP---- 143 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCC----
Confidence 7542 123567999999998887 899999988654321 11223344567888999998642 3333
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEec
Q 000529 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1441)
Q Consensus 992 ~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~ 1071 (1441)
+.+||||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ .+.+.+|++++|++
T Consensus 144 -~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~ 220 (250)
T PRK14262 144 -GTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR 220 (250)
T ss_pred -hhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 356999999999999999999999999999999999999999999999865 799999999986 47788999999985
Q ss_pred CcEEEEEcCC
Q 000529 1072 GGREVYVGPL 1081 (1441)
Q Consensus 1072 gG~~v~~G~~ 1081 (1441)
|+++..|+.
T Consensus 221 -G~i~~~g~~ 229 (250)
T PRK14262 221 -GELIEYGPT 229 (250)
T ss_pred -CEEEEecCH
Confidence 899998875
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=323.86 Aligned_cols=208 Identities=21% Similarity=0.311 Sum_probs=169.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCeeCC--CCC---ccceEEEEcCCCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMD--EFV---PERTAAYISQHDNHI 238 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~--~~~---~~~~~~yv~Q~d~~~ 238 (1441)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ ...+|+|.++|+++. ... .++.++|++|++.++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 5899999999999999999999999999999999998862 113899999999875 221 235799999999899
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc----cccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CADT 314 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 314 (1441)
+.+||.||+.++....+.... .++....++++++.+||.. ..++
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKS--------------------------------KKELDERVEWALKKAALWDEVKDRLND 145 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCC--------------------------------HHHHHHHHHHHHHHcCCccchhhhhcc
Confidence 999999999987543211000 0011123566788888743 3445
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
.++ .|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|++++|+.+++.+++|+
T Consensus 146 ~~~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~ 217 (253)
T PRK14267 146 YPS-----NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSDY 217 (253)
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCCE
Confidence 544 4999999999999999999999999999999999999999999998742 3 6677788999999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 000529 395 IILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1441)
|++|++|++++.|+++++.
T Consensus 218 i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 218 VAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=320.63 Aligned_cols=204 Identities=27% Similarity=0.434 Sum_probs=174.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-cceEEEEcCCCCCCCCCCHHH
Q 000529 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVRE 245 (1441)
Q Consensus 167 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (1441)
+|+|+|++++|||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999998 9999999998865332 457999999998899999999
Q ss_pred HHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCCC
Q 000529 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1441)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 325 (1441)
|+.++....+.. ..+....+.++++.+||.+..++.+.+ ||
T Consensus 91 ~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS 131 (235)
T cd03299 91 NIAYGLKKRKVD----------------------------------KKEIERKVLEIAEMLGIDHLLNRKPET-----LS 131 (235)
T ss_pred HHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCChhHHhcCccc-----CC
Confidence 999864322110 001112356688999999888888766 99
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEE
Q 000529 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVY 405 (1441)
Q Consensus 326 GGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~iv~ 405 (1441)
|||||||+||+|++.+|++++|||||+|||..++..+.+.|+++.. ..+++++.++|+.+++.+++|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~-~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRK-EFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998754 325667778888999999999999999999999
Q ss_pred EcCHHHHH
Q 000529 406 QGPRELVL 413 (1441)
Q Consensus 406 ~G~~~~~~ 413 (1441)
.|+++++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99988764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=319.19 Aligned_cols=197 Identities=25% Similarity=0.333 Sum_probs=170.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCccceEEEEcCCCCCCCCCCHH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1441)
.++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .+.++|++|++.+++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 46999999999999999999999999999999999999988 999999999875422 35799999998888899999
Q ss_pred HHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCC
Q 000529 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1441)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 324 (1441)
||+.+.....+.. ...+..+++.+||++..|..+++ |
T Consensus 89 ~~~~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~~~-----L 125 (223)
T TIGR03740 89 ENLKVHTTLLGLP--------------------------------------DSRIDEVLNIVDLTNTGKKKAKQ-----F 125 (223)
T ss_pred HHHHHHHHHcCCC--------------------------------------HHHHHHHHHHcCCcHHHhhhHhh-----C
Confidence 9998765432100 01245678999999888887766 9
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEE
Q 000529 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404 (1441)
Q Consensus 325 SGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~iv 404 (1441)
|||||||+++|+|++.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+.+++.+++|++++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-Q-GITVILSSHILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999998743 3 456777888889999999999999999999
Q ss_pred EEcCHH
Q 000529 405 YQGPRE 410 (1441)
Q Consensus 405 ~~G~~~ 410 (1441)
+.|++.
T Consensus 204 ~~~~~~ 209 (223)
T TIGR03740 204 YQGKIN 209 (223)
T ss_pred EecChh
Confidence 999865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=326.64 Aligned_cols=205 Identities=22% Similarity=0.292 Sum_probs=172.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC---ccceEEEEcCCCC-CCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV---PERTAAYISQHDN-HIGE 240 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (1441)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35899999999999999999999999999999999999998 999999999876432 2457999999963 6778
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1441)
.||.||+.++....+.. . ++....++.+++.+||.+..++.++.
T Consensus 97 ~tv~eni~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP----------R------------------------EEMIKRVDEALLAVNMLDFKTREPAR-- 140 (277)
T ss_pred CCHHHHHHhhHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCHhHhhCCccc--
Confidence 99999998865422110 0 01112457788999998888877765
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~ 400 (1441)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. ..+++|+.++|+.+++. .+|+|++|++
T Consensus 141 ---LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tiil~sH~~~~~~-~~d~i~~l~~ 215 (277)
T PRK13642 141 ---LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKE-KYQLTVLSITHDLDEAA-SSDRILVMKA 215 (277)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHH-hCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998754 33566777888888886 6999999999
Q ss_pred CeEEEEcCHHHHH
Q 000529 401 GQIVYQGPRELVL 413 (1441)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1441)
|+++..|+++++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998875
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=324.89 Aligned_cols=221 Identities=22% Similarity=0.260 Sum_probs=177.4
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc---eEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 919 (1441)
.++++|+++.+. +..+|+|+||++++||+++|+|+||||||||+++|+|..++. ...|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 478899987763 236999999999999999999999999999999999976531 1369999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 994 (1441)
.+... ...++.++|++|+..+++ .|+.||+.+...... .....+..+.+.++++.+++.+..+...+. .+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 87531 134567999999988887 899999987643321 112233345678899999985422211111 235
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHhhCeEEEEecC-
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG- 1072 (1441)
Q Consensus 995 ~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~vllL~~g- 1072 (1441)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.+.+|++++|+++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 6999999999999999999999999999999999999999999999865 4899999999986 578899999999853
Q ss_pred ---cEEEEEcCC
Q 000529 1073 ---GREVYVGPL 1081 (1441)
Q Consensus 1073 ---G~~v~~G~~ 1081 (1441)
|++++.|+.
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 899999986
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=317.94 Aligned_cols=195 Identities=25% Similarity=0.394 Sum_probs=166.0
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 000529 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1441)
Q Consensus 170 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1441)
|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999988 9999999998765432 357999999998899999999998
Q ss_pred HHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCCChhh
Q 000529 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328 (1441)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGq 328 (1441)
++...... . . .+....++++++.+||++..++.+.+ |||||
T Consensus 93 ~~~~~~~~-~--------~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~ 133 (211)
T cd03298 93 LGLSPGLK-L--------T-------------------------AEDRQAIEVALARVGLAGLEKRLPGE-----LSGGE 133 (211)
T ss_pred cccccccC-c--------c-------------------------HHHHHHHHHHHHHcCCHHHHhCCccc-----CCHHH
Confidence 75421100 0 0 00122456789999999888887765 99999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEEc
Q 000529 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG 407 (1441)
Q Consensus 329 rkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~iv~~G 407 (1441)
|||++||++++.+|++++|||||+|||..++..+.+.|+++.. ..+.+|+.++|+.+++.+++|++++|++|+++..|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHA-ETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999999998754 33566777899999999999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=323.03 Aligned_cols=216 Identities=24% Similarity=0.267 Sum_probs=174.5
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCce---EEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~---~~G~i~i~g 919 (1441)
.+.++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 467788887652 3469999999999999999999999999999999999764322 379999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 990 (1441)
.+... ...++.++|++|++.+++.+|+.||+.+...... ....+...+.++++++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87642 1345679999999999998999999987643221 1122333455667777777642 33433
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999864 799999999986 5777899999998
Q ss_pred cCcEEEEEcCC
Q 000529 1071 RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ~gG~~v~~G~~ 1081 (1441)
+ |++++.|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14272 222 V-GDLVEHGPT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 899999875
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=358.62 Aligned_cols=219 Identities=26% Similarity=0.301 Sum_probs=182.4
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|++++++ ++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEEC
Confidence 377888887652 34699999999999999999999999999999999998653 479999999876
Q ss_pred Cccc----cceEEEEeccCCCCCCCCCHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000529 923 KQET----FARISGYCEQNDIHSPFVTVYESLFYSAWLR----LPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1441)
Q Consensus 923 ~~~~----~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr----~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 994 (1441)
.... .++.++|++|++.+++.+||+||+.++.... .....+.++.+++++++++.+||.+..++.++
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA----- 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----
Confidence 4311 2346999999998889999999998753211 00001223345668899999999887777654
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 995 ~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
.|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.+|++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 59999999999999999999999999999999999999999999999878999999999986 47778999999985 89
Q ss_pred EEEEcCCCC
Q 000529 1075 EVYVGPLGH 1083 (1441)
Q Consensus 1075 ~v~~G~~~~ 1083 (1441)
+++.|+..+
T Consensus 223 i~~~g~~~~ 231 (510)
T PRK09700 223 SVCSGMVSD 231 (510)
T ss_pred Eeeecchhh
Confidence 999998754
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=324.80 Aligned_cols=215 Identities=25% Similarity=0.266 Sum_probs=174.7
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCcc-
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP- 921 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~- 921 (1441)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccc
Confidence 378888887653 24699999999999999999999999999999999998653 47999999987
Q ss_pred ----CCcc---c----cceEEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 000529 922 ----KKQE---T----FARISGYCEQNDI--HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSL 987 (1441)
Q Consensus 922 ----~~~~---~----~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ 987 (1441)
+... . .++.++|++|++. +.+.+|+.||+.+...... .....+.++.+.++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2346999999974 5677899999876432211 1122234556788999999964 45554
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeE
Q 000529 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1066 (1441)
Q Consensus 988 vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 1066 (1441)
+ ..||||||||++|||||+.+|+||+|||||+|||+.++..+++.|++++++ |.|||+++|++. .+.+.+|++
T Consensus 149 ~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 P-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred C-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3 469999999999999999999999999999999999999999999998765 899999999986 466789999
Q ss_pred EEEecCcEEEEEcCC
Q 000529 1067 FLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1067 llL~~gG~~v~~G~~ 1081 (1441)
++|++ |++++.|+.
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 899999875
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=324.39 Aligned_cols=208 Identities=27% Similarity=0.424 Sum_probs=174.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1441)
..+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 36999999999999999999999999999999999999988 9999999998765432 34699999998778889
Q ss_pred CHHHHHHHHhH-hcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccc
Q 000529 242 TVRETLAFAAR-CQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 242 TV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1441)
||+||+.++.. .... . . . ...+....++.+++.+||.+..++.+++
T Consensus 91 tv~e~l~~~~~~~~~~----------~------~-~--------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 137 (256)
T TIGR03873 91 TVRDVVALGRIPHRSL----------W------A-G--------------DSPHDAAVVDRALARTELSHLADRDMST-- 137 (256)
T ss_pred CHHHHHHhcchhhhhh----------c------c-C--------------CCHHHHHHHHHHHHHcCcHhhhcCCccc--
Confidence 99999988531 1000 0 0 0 0001122456789999998888888766
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~ 400 (1441)
|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.. .+++|++++|+.+++.+++|+|++|++
T Consensus 138 ---LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~ 212 (256)
T TIGR03873 138 ---LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA--TGVTVVAALHDLNLAASYCDHVVVLDG 212 (256)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999998743 356777788999999999999999999
Q ss_pred CeEEEEcCHHHHH
Q 000529 401 GQIVYQGPRELVL 413 (1441)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1441)
|+++.+|+.+++.
T Consensus 213 G~i~~~g~~~~~~ 225 (256)
T TIGR03873 213 GRVVAAGPPREVL 225 (256)
T ss_pred CCEEEecCHHHhh
Confidence 9999999988763
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=319.35 Aligned_cols=206 Identities=27% Similarity=0.368 Sum_probs=175.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1441)
+++|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++..++.+||
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 36999999999999999999999999999999999999998 9999999998865432 4679999999988889999
Q ss_pred HHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccC
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1441)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 323 (1441)
+||+.+.....+.. .......++.+++.+||++..++.+.+
T Consensus 90 ~~nl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (232)
T cd03300 90 FENIAFGLRLKKLP----------------------------------KAEIKERVAEALDLVQLEGYANRKPSQ----- 130 (232)
T ss_pred HHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhcCChhh-----
Confidence 99998865432210 000112356789999999888887765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000529 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1441)
Q Consensus 324 LSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~i 403 (1441)
||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++.. ..+.+|++++|+.+++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQK-ELGITFVFVTHDQEEALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 3355666688888999999999999999999
Q ss_pred EEEcCHHHHH
Q 000529 404 VYQGPRELVL 413 (1441)
Q Consensus 404 v~~G~~~~~~ 413 (1441)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999887664
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=362.64 Aligned_cols=210 Identities=28% Similarity=0.401 Sum_probs=175.8
Q ss_pred ceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCcc
Q 000529 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1441)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 921 (1441)
..++++|++|+++. .++++|+|+|++|+|||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEe
Confidence 36899999998752 234699999999999999999999999999999999998763 47999999998
Q ss_pred CCc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000529 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-------RQSLVGLP 991 (1441)
Q Consensus 922 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 991 (1441)
.++ ..+++.+|||+|++.+++ -|++||+.++. + +.+ ++.+.++++..++.+. .|+.+|..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIP----DADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC----C-CCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 753 356788999999998885 69999997641 1 222 2346677777777653 35666654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEec
Q 000529 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1441)
Q Consensus 992 ~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~ 1071 (1441)
| .+||||||||++|||||+++|+||+||||||+||+.++..+++.|++ .++|+|+++|+++ ....+|++++|++
T Consensus 613 G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 G-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER 686 (710)
T ss_pred C-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 4 57999999999999999999999999999999999999999999986 4899999999985 4577999999985
Q ss_pred CcEEEEEcCC
Q 000529 1072 GGREVYVGPL 1081 (1441)
Q Consensus 1072 gG~~v~~G~~ 1081 (1441)
|+++..|+.
T Consensus 687 -G~i~~~G~~ 695 (710)
T TIGR03796 687 -GKVVQRGTH 695 (710)
T ss_pred -CEEEEecCH
Confidence 899999985
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=325.50 Aligned_cols=215 Identities=24% Similarity=0.272 Sum_probs=176.5
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCC---ceEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 919 (1441)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.++|
T Consensus 25 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 25 ALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred EEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 588999988763 24699999999999999999999999999999999997542 13579999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 990 (1441)
.+... ...++.++|++|++.+++. |++||+.+...... ....+..++.++++++.+++.+ ..+..
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 165 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHEN--- 165 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCC---
Confidence 87642 1345679999999888875 99999987654321 1122233456788899998864 23333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++++ +.|||++||+++ ++.+.+|++++|+
T Consensus 166 --~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 241 (272)
T PRK14236 166 --AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMY 241 (272)
T ss_pred --cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 356999999999999999999999999999999999999999999999976 799999999986 4778899999998
Q ss_pred cCcEEEEEcCC
Q 000529 1071 RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ~gG~~v~~G~~ 1081 (1441)
+ |+++..|+.
T Consensus 242 ~-G~i~~~g~~ 251 (272)
T PRK14236 242 M-GKLVEYGDT 251 (272)
T ss_pred C-CEEEecCCH
Confidence 5 899999875
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=317.38 Aligned_cols=173 Identities=24% Similarity=0.293 Sum_probs=135.8
Q ss_pred eeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCccccceEEEEeccCCCCCCCCCHHHHHH
Q 000529 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLF 951 (1441)
Q Consensus 872 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 951 (1441)
|+==.++|..||+++++||||-||||+.++|+|..++ .+|+ .. .-.++|-||--.-....||++-|.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 3334577889999999999999999999999997663 2443 11 123678888655556789999775
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHH
Q 000529 952 YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1031 (1441)
Q Consensus 952 f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~ 1031 (1441)
-...-+.. ..-...++++-+.|.+..++.+. +|||||.|||+||.+|.+++++.+||||++.||.+.+
T Consensus 424 ~~~~~~~~-------~s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFG-------SSYFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhcc-------cchhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 43221111 11234678889999999988764 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 1032 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 1032 ~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
..+-+.||+..++ ++|.+++-||... +--..|++++..
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999999864 8899999999753 444578888875
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=317.85 Aligned_cols=193 Identities=25% Similarity=0.345 Sum_probs=160.4
Q ss_pred CCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCccccceEEEEeccCCCCCCCCC
Q 000529 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVT 945 (1441)
Q Consensus 866 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 945 (1441)
++++++|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+|
T Consensus 32 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~t 100 (224)
T cd03220 32 VGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELT 100 (224)
T ss_pred cCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCc
Confidence 455789999999999999999999999999999999999865 358999999976421 111233456799
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCC
Q 000529 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025 (1441)
Q Consensus 946 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsg 1025 (1441)
|+||+.+...... ......++.++++++.+++.+..++.++ .||||||||++|||+|+.+|++|+|||||+|
T Consensus 101 v~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEP~~g 172 (224)
T cd03220 101 GRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARLAFAIATALEPDILLIDEVLAV 172 (224)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999987654321 2233445567889999999887777654 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1026 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1026 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 173 LD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 173 GDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999999877899999999986 46678999999975 8888765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=323.68 Aligned_cols=209 Identities=24% Similarity=0.320 Sum_probs=171.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIG 239 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 239 (1441)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. ...+|+|.++|.++..... ++.++|++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 35899999999999999999999999999999999998741 1138999999998764322 357999999988889
Q ss_pred CCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc----ccccc
Q 000529 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CADTM 315 (1441)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt~ 315 (1441)
.+||+||+.++.+..+.... ..+....++++++.+||.+ ..|+.
T Consensus 96 ~~tv~enl~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 143 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVKS--------------------------------KKELQERVRWALEKAQLWDEVKDRLDAP 143 (250)
T ss_pred CCcHHHHHHHHHHhccccCC--------------------------------HHHHHHHHHHHHHHcCCCcchhhhhcCC
Confidence 99999999987543211000 0011234567889999854 34555
Q ss_pred cccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. . +++++.++|+.+++.+++|++
T Consensus 144 ~~~-----LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~-~~tiii~sH~~~~~~~~~d~i 215 (250)
T PRK14247 144 AGK-----LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK--K-DMTIVLVTHFPQQAARISDYV 215 (250)
T ss_pred ccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--c-CCEEEEEeCCHHHHHHhcCEE
Confidence 554 99999999999999999999999999999999999999999999863 2 466777889999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 000529 396 ILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1441)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 216 AFLYKGQIVEWGPTREVF 233 (250)
T ss_pred EEEECCeEEEECCHHHHH
Confidence 999999999999988764
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=318.95 Aligned_cols=200 Identities=27% Similarity=0.428 Sum_probs=163.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCccceEEEEcCCCCCC--CCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHI--GEMT 242 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lT 242 (1441)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+. +.+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCCc
Confidence 46999999999999999999999999999999999999998 9999999987642 346799999987653 3489
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1441)
|+||+.++...... .+.. ...+....++.+++.+||++..++.+++
T Consensus 87 v~e~l~~~~~~~~~--~~~~----------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 132 (213)
T cd03235 87 VRDVVLMGLYGHKG--LFRR----------------------------LSKADKAKVDEALERVGLSELADRQIGE---- 132 (213)
T ss_pred HHHHHHhccccccc--cccC----------------------------CCHHHHHHHHHHHHHcCCHHHHhCCccc----
Confidence 99999986432100 0000 0001123467789999998888887766
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 GLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~ 402 (1441)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+++|+.++|+.+++.+++|++++|++|
T Consensus 133 -LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 133 -LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR--EGMTILVVTHDLGLVLEYFDRVLLLNRT- 208 (213)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEcCc-
Confidence 999999999999999999999999999999999999999999998754 3567777899999999999999999875
Q ss_pred EEEEc
Q 000529 403 IVYQG 407 (1441)
Q Consensus 403 iv~~G 407 (1441)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=324.16 Aligned_cols=209 Identities=26% Similarity=0.392 Sum_probs=173.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1441)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|+..+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 46999999999999999999999999999999999999987 9999999998754322 35699999998888889
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1441)
||.||+.++..-.. ..+. . ...+....++++++.+||++..++.+++
T Consensus 92 tv~~~i~~~~~~~~--~~~~----------------~------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 138 (255)
T PRK11231 92 TVRELVAYGRSPWL--SLWG----------------R------------LSAEDNARVNQAMEQTRINHLADRRLTD--- 138 (255)
T ss_pred cHHHHHHhccchhh--hhcc----------------C------------CCHHHHHHHHHHHHHcCCHHHHcCCccc---
Confidence 99999988532000 0000 0 0001123456789999998888888766
Q ss_pred cCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000529 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1441)
Q Consensus 322 rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G 401 (1441)
|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++.. .+++|+.++|+.+++.+++|++++|++|
T Consensus 139 --LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~--~~~tiii~tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 139 --LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT--QGKTVVTVLHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999999999999999999999999998653 3566777889999999999999999999
Q ss_pred eEEEEcCHHHHH
Q 000529 402 QIVYQGPRELVL 413 (1441)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1441)
+++..|+.+++.
T Consensus 215 ~i~~~~~~~~~~ 226 (255)
T PRK11231 215 HVMAQGTPEEVM 226 (255)
T ss_pred eEEEEcCHHHhc
Confidence 999999987763
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=323.40 Aligned_cols=213 Identities=22% Similarity=0.284 Sum_probs=173.9
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc--eEEEEEEEcCc
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGDIRISGY 920 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~--~~~G~i~i~g~ 920 (1441)
.++++|+++.++ +.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 578889887651 25899999999999999999999999999999999986531 15799999998
Q ss_pred cCCcccc-ceEEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc---cccccccCCCCC
Q 000529 921 PKKQETF-ARISGYCEQNDI--HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP---LRQSLVGLPGVN 994 (1441)
Q Consensus 921 ~~~~~~~-~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~vg~~~~~ 994 (1441)
++..... ++.++|++|++. +.+..|+.+++.+.+.... ... .++.++++++.++|.+ ..++. +.
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----PF 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----Cc
Confidence 7643222 356999999974 4466899998866443221 111 2356788999999976 33444 34
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCc
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1441)
Q Consensus 995 ~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG 1073 (1441)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~-G 217 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH-G 217 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999999764 899999999986 46778999999985 8
Q ss_pred EEEEEcCC
Q 000529 1074 REVYVGPL 1081 (1441)
Q Consensus 1074 ~~v~~G~~ 1081 (1441)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (254)
T PRK10418 218 RIVEQGDV 225 (254)
T ss_pred EEEEecCH
Confidence 99998875
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=331.43 Aligned_cols=206 Identities=20% Similarity=0.303 Sum_probs=169.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCC----C----CccceEEEEcCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE----F----VPERTAAYISQHDN 236 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~----~----~~~~~~~yv~Q~d~ 236 (1441)
..+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 24 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~ 100 (289)
T PRK13645 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPE 100 (289)
T ss_pred cceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcc
Confidence 35899999999999999999999999999999999999987 9999999998742 1 11357999999863
Q ss_pred -CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc-ccccc
Q 000529 237 -HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADT 314 (1441)
Q Consensus 237 -~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (1441)
.+...||+||+.|+....+.. .++....++.+++.++|+ +..++
T Consensus 101 ~~~~~~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~ll~~~~L~~~~~~~ 146 (289)
T PRK13645 101 YQLFQETIEKDIAFGPVNLGEN----------------------------------KQEAYKKVPELLKLVQLPEDYVKR 146 (289)
T ss_pred hhhhhhHHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhHhcC
Confidence 233469999999865322110 001112356678899994 56777
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ ..+++|++++|+.+++.+++|+
T Consensus 147 ~~~~-----LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiiiisH~~~~~~~~~d~ 220 (289)
T PRK13645 147 SPFE-----LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNK-EYKKRIIMVTHNMDQVLRIADE 220 (289)
T ss_pred Chhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCE
Confidence 7665 999999999999999999999999999999999999999999998754 3356677789999999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 000529 395 IILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1441)
+++|++|++++.|+.+++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 221 VIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999988764
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=322.98 Aligned_cols=206 Identities=18% Similarity=0.243 Sum_probs=166.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcceEEEECCeeCCCC--C---ccceEEEEcCCCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTYNGHNMDEF--V---PERTAAYISQHDNHI 238 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~~~ 238 (1441)
++|+|+|++|++||+++|+||||||||||+++|+|.++ |....+|+|.++|+++... . .++.++|++|++.++
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 58999999999999999999999999999999999986 2111289999999987421 1 145799999998777
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc----ccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----ICADT 314 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1441)
+ .||+||+.++...... .. .++....++++++.+||. +..++
T Consensus 107 ~-~tv~~nl~~~~~~~~~-~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 152 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEK-LS--------------------------------RAEMDERVEWALTKAALWNEVKDKLHQ 152 (260)
T ss_pred c-CcHHHHHhhhHhhcCC-CC--------------------------------HHHHHHHHHHHHHHcCCChhhHHHHhc
Confidence 6 8999999986542210 00 001112356788888874 33455
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
.++ .|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++. . +++|+.++|+.+++.+++|+
T Consensus 153 ~~~-----~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~-~~tiii~sH~~~~~~~~~d~ 224 (260)
T PRK10744 153 SGY-----SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK--Q-DYTVVIVTHNMQQAARCSDY 224 (260)
T ss_pred CCC-----CCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEeCCHHHHHHhCCE
Confidence 444 499999999999999999999999999999999999999999999873 3 35677788999999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 000529 395 IILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1441)
+++|++|+++..|+.+++.
T Consensus 225 i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 225 TAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=327.56 Aligned_cols=215 Identities=20% Similarity=0.264 Sum_probs=174.4
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCC--C-ceEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 919 (1441)
.+.++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+..|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 578899987763 2459999999999999999999999999999999999642 1 02579999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK----PLRQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 990 (1441)
.++.. ...++.++|++|++.+++. ||.||+.+....+.. .+....++.+.++++.+++. +..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1245679999999988874 999999886543211 12233345677888888874 233333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++|+
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999865 689999999986 4677899999998
Q ss_pred cCcEEEEEcCC
Q 000529 1071 RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ~gG~~v~~G~~ 1081 (1441)
+ |+++..|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 5 899999885
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=316.10 Aligned_cols=211 Identities=23% Similarity=0.343 Sum_probs=174.8
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|+++.+... .+.+.+|+|+||++++|+++||+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5678888765310 112579999999999999999999999999999999999765 35799999998764
Q ss_pred cc------ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000529 924 QE------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1441)
Q Consensus 924 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 997 (1441)
.. ..++.++|++|++.+++.+|+.||+.+...... ....++..+.++++++.+||.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 21 245679999999988888999999988654321 1233444567889999999987777664 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHhhCeEEEEecCcEE
Q 000529 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1441)
Q Consensus 998 gGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~ 1075 (1441)
+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ +.+.+|++++|++ |++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999976 4899999999975 4578999999975 654
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=325.94 Aligned_cols=215 Identities=21% Similarity=0.248 Sum_probs=174.1
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCC--C-ceEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 919 (1441)
.+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 478899987763 2469999999999999999999999999999999999642 1 13579999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 990 (1441)
.+... ...++.++|++|++.+++. |++||+.+...... .......++.+.++++.+++.+ ..++.
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87642 1235679999999888874 99999987643221 1122233455778888888852 23333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999965 689999999986 4778899999998
Q ss_pred cCcEEEEEcCC
Q 000529 1071 RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ~gG~~v~~G~~ 1081 (1441)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 5 899999875
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=322.61 Aligned_cols=213 Identities=25% Similarity=0.311 Sum_probs=171.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCcceEEEECCeeCCCCCc----cceEEEEcCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL--DPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 238 (1441)
+++|+|+|+++++||+++|+|||||||||||++|+|.+ +|+ +|+|.++|+++..... +..++|++|++..+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 46999999999999999999999999999999999995 566 9999999998765432 23489999999999
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc-cccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTMVG 317 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 317 (1441)
+.+||+|++.+.......... ... ....+....++.+++.+||+ ...++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~~------------------~~~---------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSARG------------------EEP---------LDLLDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhcccc------------------ccc---------ccHHHHHHHHHHHHHHcCCchhhcccccc
Confidence 999999999986542210000 000 00011123467789999997 45666654
Q ss_pred cccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhh-cCeEE
Q 000529 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL-FDDII 396 (1441)
Q Consensus 318 ~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l-~D~vi 396 (1441)
. .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+++|+.++|+.+++... +|+++
T Consensus 143 ~----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~vsH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 143 E----GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE--PDRSFLIITHYQRLLNYIKPDYVH 216 (243)
T ss_pred c----CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCcEEEEEEecHHHHHhhcCCeEE
Confidence 1 3999999999999999999999999999999999999999999998743 356677788989999888 89999
Q ss_pred EecCCeEEEEcCHHHHH
Q 000529 397 LLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1441)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999988654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=286.05 Aligned_cols=202 Identities=28% Similarity=0.392 Sum_probs=174.5
Q ss_pred CccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-------cceEEEEc
Q 000529 160 STKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYIS 232 (1441)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~ 232 (1441)
......+||++|++.|++||-++|+|||||||||||-+|+|+-.|+ +|+|.+.|+++..+.. .+.+|+|+
T Consensus 18 ~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVF 94 (228)
T COG4181 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVF 94 (228)
T ss_pred CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEE
Confidence 3446788999999999999999999999999999999999999998 9999999999876543 26799999
Q ss_pred CCCCCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccc
Q 000529 233 QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICA 312 (1441)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1441)
|...++|+||-.||+...+.++|-+.+ +....+...|+.+||.+..
T Consensus 95 QSF~Lip~ltAlENV~lPleL~ge~~~----------------------------------~~~~~A~~lL~~vGLg~Rl 140 (228)
T COG4181 95 QSFHLIPNLTALENVALPLELRGESSA----------------------------------DSRAGAKALLEAVGLGKRL 140 (228)
T ss_pred EeeeccccchhhhhccchhhhcCCccc----------------------------------cHHHHHHHHHHHhCccccc
Confidence 999999999999999998887763211 0112345679999999988
Q ss_pred ccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhc
Q 000529 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLF 392 (1441)
Q Consensus 313 dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~ 392 (1441)
+.+++. |||||+|||+||||+...|+|||.||||-.||..|..+|.+.|-.+.+ ..+++.+.++|+. .....|
T Consensus 141 ~HyP~q-----LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr-e~G~TlVlVTHD~-~LA~Rc 213 (228)
T COG4181 141 THYPAQ-----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR-ERGTTLVLVTHDP-QLAARC 213 (228)
T ss_pred ccCccc-----cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhh-hcCceEEEEeCCH-HHHHhh
Confidence 888776 999999999999999999999999999999999999999999987765 4567777788764 566789
Q ss_pred CeEEEecCCeEEE
Q 000529 393 DDIILLSDGQIVY 405 (1441)
Q Consensus 393 D~vilL~~G~iv~ 405 (1441)
||++-|.+|+++.
T Consensus 214 ~R~~r~~~G~l~~ 226 (228)
T COG4181 214 DRQLRLRSGRLVE 226 (228)
T ss_pred hheeeeecceecc
Confidence 9999999999874
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=361.28 Aligned_cols=210 Identities=24% Similarity=0.389 Sum_probs=175.7
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|++|+++. ++++|+|+|++|+|||.+||+||||||||||+++|+|...+ .+|+|.+||.++
T Consensus 473 ~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~i 538 (708)
T TIGR01193 473 DIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFSL 538 (708)
T ss_pred cEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEEH
Confidence 6899999998741 23699999999999999999999999999999999998763 579999999886
Q ss_pred Cc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-------RQSLVGLPG 992 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 992 (1441)
.+ ..+++.+|||+|++.+++ -|++||+.++.. .+.+. +.+.++++..++.+. .|+.+|..|
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G 609 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEEG 609 (708)
T ss_pred HHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCCC
Confidence 43 456788999999999886 499999987521 12222 335667777766543 366676543
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 993 ~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ +|+|+|+++|+++ ..+.+|++++|++
T Consensus 610 -~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~- 683 (708)
T TIGR01193 610 -SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH- 683 (708)
T ss_pred -CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC-
Confidence 569999999999999999999999999999999999999999999985 4899999999985 5678999999985
Q ss_pred cEEEEEcCC
Q 000529 1073 GREVYVGPL 1081 (1441)
Q Consensus 1073 G~~v~~G~~ 1081 (1441)
|+++..|+.
T Consensus 684 G~i~~~G~~ 692 (708)
T TIGR01193 684 GKIIEQGSH 692 (708)
T ss_pred CEEEEECCH
Confidence 899999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=331.24 Aligned_cols=211 Identities=20% Similarity=0.283 Sum_probs=170.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCeeCCCC-----CccceEEEEcCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1441)
.++|+|+|++|++||+++|+|||||||||||++|+|..++. ...+|+|.++|+++... ..++.++||+|++.+
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 35899999999999999999999999999999999998631 01289999999998632 224679999999876
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccc
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1441)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1441)
+ +.||+||+.|+....+.. . .+.....++.+++..+|.+..++.++
T Consensus 175 ~-~~ti~eNi~~~~~~~~~~----------~-----------------------~~~~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 F-EMSIFDNVAYGPRNNGIN----------D-----------------------RKILEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred C-CCcHHHHHHhHHHhcCCC----------h-----------------------HHHHHHHHHHHHHHcCCcchhhhhhh
Confidence 6 589999999875432110 0 00111234556777777554445554
Q ss_pred cccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000529 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1441)
Q Consensus 318 ~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vil 397 (1441)
+.+..|||||||||+||||++.+|+||+|||||+|||+.+...+.+.|+++.. +.++++++|....+.+.+|+|++
T Consensus 221 -~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~---~~Tii~iTH~l~~i~~~~Driiv 296 (329)
T PRK14257 221 -KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK---KYSIIIVTHSMAQAQRISDETVF 296 (329)
T ss_pred -CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEEEE
Confidence 34556999999999999999999999999999999999999999999998642 36777789999999999999999
Q ss_pred ecCCeEEEEcCHHHHH
Q 000529 398 LSDGQIVYQGPRELVL 413 (1441)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1441)
|++|++++.|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999885
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=326.17 Aligned_cols=207 Identities=23% Similarity=0.269 Sum_probs=172.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCC--CCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN--HIG 239 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~--~~~ 239 (1441)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999998 9999999998753221 246999999864 567
Q ss_pred CCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc-ccccccccc
Q 000529 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTMVGD 318 (1441)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 318 (1441)
.+||.|++.+..+.... .. ..+....++.+++.+||. +..++.+.+
T Consensus 103 ~~tv~~~l~~~~~~~~~---------~~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 149 (267)
T PRK15112 103 RQRISQILDFPLRLNTD---------LE------------------------PEQREKQIIETLRQVGLLPDHASYYPHM 149 (267)
T ss_pred chhHHHHHHHHHHhccC---------CC------------------------HHHHHHHHHHHHHHcCCChHHHhcCchh
Confidence 88999999886543210 00 001122456789999994 666766655
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ..+++|++++|+.+++.+++|++++|
T Consensus 150 -----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 150 -----LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQE-KQGISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred -----cCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999998754 33566777889999999999999999
Q ss_pred cCCeEEEEcCHHHHH
Q 000529 399 SDGQIVYQGPRELVL 413 (1441)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1441)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=323.41 Aligned_cols=207 Identities=21% Similarity=0.312 Sum_probs=167.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCeeCCCC--C---ccceEEEEcCCCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEF--V---PERTAAYISQHDNHI 238 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~~~ 238 (1441)
.+|+|+|++|+||++++|+|||||||||||++|+|.++|. ...+|+|+++|+++... . .++.++|++|++..+
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 112 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPF 112 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCC
Confidence 5899999999999999999999999999999999998741 01289999999987532 1 235799999998777
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc----cccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CADT 314 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 314 (1441)
+. ||.||+.++....+.... + .+....++.+++.+||.+ ..++
T Consensus 113 ~~-tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 159 (267)
T PRK14235 113 PK-SIYENVAYGPRIHGLARS--------K------------------------AELDEIVETSLRKAGLWEEVKDRLHE 159 (267)
T ss_pred CC-cHHHHHHHHHHhcccccc--------h------------------------HHHHHHHHHHHHHcCCchhhhHHhhC
Confidence 74 999999987543221000 0 001123567888999964 2344
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
.++ .|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ + .+|++++|+.+++.+++|+
T Consensus 160 ~~~-----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~-~tiiivtH~~~~~~~~~d~ 231 (267)
T PRK14235 160 PGT-----GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--N-YTIVIVTHSMQQAARVSQR 231 (267)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--C-CeEEEEEcCHHHHHhhCCE
Confidence 444 4999999999999999999999999999999999999999999998742 3 5677788999999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 000529 395 IILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1441)
+++|++|+++.+|+.+++.
T Consensus 232 v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 232 TAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=326.77 Aligned_cols=210 Identities=23% Similarity=0.387 Sum_probs=174.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1441)
.++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++..++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 35999999999999999999999999999999999999987 9999999998765332 35699999999888899
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1441)
||+||+.++..-.. + ... . ..+.....++.+++.+||++..++.+.+
T Consensus 97 tv~~~~~~~~~~~~-~----~~~-------------~------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 143 (265)
T PRK10253 97 TVQELVARGRYPHQ-P----LFT-------------R------------WRKEDEEAVTKAMQATGITHLADQSVDT--- 143 (265)
T ss_pred cHHHHHHhCccccc-c----ccc-------------C------------CCHHHHHHHHHHHHHcCCHHHhcCCccc---
Confidence 99999987531000 0 000 0 0000122456789999998877877765
Q ss_pred cCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000529 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1441)
Q Consensus 322 rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G 401 (1441)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.. ..+++|++++|+..++.+++|++++|++|
T Consensus 144 --LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 144 --LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNR-EKGYTLAAVLHDLNQACRYASHLIALREG 220 (265)
T ss_pred --CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999998754 33567777889999999999999999999
Q ss_pred eEEEEcCHHHHH
Q 000529 402 QIVYQGPRELVL 413 (1441)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1441)
++++.|+++++.
T Consensus 221 ~i~~~g~~~~~~ 232 (265)
T PRK10253 221 KIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=322.25 Aligned_cols=215 Identities=26% Similarity=0.267 Sum_probs=175.0
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc---eEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 919 (1441)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..... ..+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 477888887653 346999999999999999999999999999999999964321 1379999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 990 (1441)
.+... ...++.++|++|++.+++. ||+||+.+....+.. ......++.+.++++.+++.+ ..++.
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 146 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDS--- 146 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcC---
Confidence 87642 2235679999999988874 999999987544321 122334456788888888753 22333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~ 222 (253)
T PRK14261 147 --ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999975 689999999986 4677899999998
Q ss_pred cCcEEEEEcCC
Q 000529 1071 RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ~gG~~v~~G~~ 1081 (1441)
+ |+++..|+.
T Consensus 223 ~-G~i~~~g~~ 232 (253)
T PRK14261 223 L-GKLIEFDKT 232 (253)
T ss_pred C-CEEEEcCCH
Confidence 5 899998885
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=314.80 Aligned_cols=199 Identities=22% Similarity=0.329 Sum_probs=168.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC-ccceEEEEcCCCCCCCCCCHHH
Q 000529 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-PERTAAYISQHDNHIGEMTVRE 245 (1441)
Q Consensus 167 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (1441)
+++|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 457999999999999999999999999999999999998 999999999875432 2467999999998999999999
Q ss_pred HHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCCC
Q 000529 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1441)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 325 (1441)
|+.+....... .. .+....++++++.+||++..++.+.+ ||
T Consensus 90 n~~~~~~~~~~-~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS 130 (213)
T TIGR01277 90 NIGLGLHPGLK-LN---------------------------------AEQQEKVVDAAQQVGIADYLDRLPEQ-----LS 130 (213)
T ss_pred HHHhHhhccCC-cc---------------------------------HHHHHHHHHHHHHcCcHHHhhCCccc-----CC
Confidence 99875321100 00 00112356789999998888887765 99
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEE
Q 000529 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVY 405 (1441)
Q Consensus 326 GGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~iv~ 405 (1441)
||||||++||++++.+|++++|||||+|||..++..+.+.|+++.. ..+++|++++|+.+++.+++|++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCS-ERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 9999999999999999999999999999999999999999998754 335677778899999999999999999999998
Q ss_pred EcC
Q 000529 406 QGP 408 (1441)
Q Consensus 406 ~G~ 408 (1441)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=319.26 Aligned_cols=206 Identities=26% Similarity=0.413 Sum_probs=175.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-cceEEEEcCCCCCCCCCCH
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1441)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 36999999999999999999999999999999999999987 9999999998765433 3579999999988889999
Q ss_pred HHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccC
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1441)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 323 (1441)
+||+.+..+..+.. . ......++++++.++|....++.+++
T Consensus 90 ~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (237)
T TIGR00968 90 RDNIAFGLEIRKHP----------K------------------------AKIKARVEELLELVQLEGLGDRYPNQ----- 130 (237)
T ss_pred HHHHHhHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCHhHhhCChhh-----
Confidence 99999865432110 0 00112346788999998878877765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000529 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1441)
Q Consensus 324 LSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~i 403 (1441)
||||||||++||++++.+|++++|||||+|||..+...+.+.|++... ..+.+|+.++|..+++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD-EVHVTTVFVTHDQEEAMEVADRIVVMSNGKI 209 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998654 3356666788888999999999999999999
Q ss_pred EEEcCHHHHH
Q 000529 404 VYQGPRELVL 413 (1441)
Q Consensus 404 v~~G~~~~~~ 413 (1441)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (237)
T TIGR00968 210 EQIGSPDEVY 219 (237)
T ss_pred EEecCHHHHH
Confidence 9999988764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=319.60 Aligned_cols=201 Identities=24% Similarity=0.416 Sum_probs=171.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 000529 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1441)
Q Consensus 170 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1441)
|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999998 9999999998765332 357999999998899999999998
Q ss_pred HHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccCCChhh
Q 000529 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328 (1441)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGq 328 (1441)
++... ... .. ......++++++.+||++..++.+++ |||||
T Consensus 94 ~~~~~-~~~--------~~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLK--------LN-------------------------AAQREKLHAIARQMGIEDLLARLPGQ-----LSGGQ 134 (232)
T ss_pred ccccc-ccC--------CC-------------------------HHHHHHHHHHHHHcCcHHHHhCCccc-----CCHHH
Confidence 75321 000 00 00123467789999999888888876 99999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEEcC
Q 000529 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 408 (1441)
Q Consensus 329 rkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~iv~~G~ 408 (1441)
||||+||++++.+|++++|||||+|||..++..+.+.|+++.+ ..++++++++|+.+++.+++|++++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQ-ERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998754 335567778899999999999999999999999999
Q ss_pred HHHHH
Q 000529 409 RELVL 413 (1441)
Q Consensus 409 ~~~~~ 413 (1441)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 88765
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=322.08 Aligned_cols=219 Identities=19% Similarity=0.226 Sum_probs=176.2
Q ss_pred ceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCC--c-eEEEEEEEc
Q 000529 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGDIRIS 918 (1441)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~ 918 (1441)
..+..+++++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ + +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFY-------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEe-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 346666666554 345799999999999999999999999999999999997642 1 257999999
Q ss_pred CccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000529 919 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGV 993 (1441)
Q Consensus 919 g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 993 (1441)
|.+... ...++.++|++|++.++ .+|+.||+.+....+. . ....++.++++++.+++.+..+...+. ..
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKV-SG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhC-Cc
Confidence 987632 13456799999998877 5999999988764432 1 122345688899999986533222221 24
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe---
Q 000529 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK--- 1070 (1441)
Q Consensus 994 ~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~--- 1070 (1441)
+.||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 5799999999999999999999999999999999999999999999995 4799999999986 4778899999996
Q ss_pred ----cCcEEEEEcCC
Q 000529 1071 ----RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ----~gG~~v~~G~~ 1081 (1441)
++|+++..|+.
T Consensus 226 ~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 226 SQGTRTGYLVEMGPT 240 (261)
T ss_pred ccccCCceEEEeCCH
Confidence 46899999985
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=321.57 Aligned_cols=215 Identities=24% Similarity=0.324 Sum_probs=174.3
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCC--c-eEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g 919 (1441)
.+.++|++++++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|..++ . +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 377889887763 24699999999999999999999999999999999997641 1 2579999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 990 (1441)
.+... ...++.++|++|++.+++ .||+||+.+...... ....+..++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87532 124567999999988776 799999987643321 1122333456788899999852 22332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 356999999999999999999999999999999999999999999999864 799999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000529 1071 RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ~gG~~v~~G~~ 1081 (1441)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 5 899998875
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=354.50 Aligned_cols=220 Identities=23% Similarity=0.353 Sum_probs=180.7
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|++++++ ++.+|+|||+++++||++||+||||||||||+++|+|..++++.+|+|.++|.+..
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 46778877652 34699999999999999999999999999999999997653224799999998764
Q ss_pred ccc----cceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCcCC
Q 000529 924 QET----FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP-EVNSETRKMFIEEVMELVELKPLR-QSLVGLPGVNGLS 997 (1441)
Q Consensus 924 ~~~----~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LS 997 (1441)
... .++.+||++|++.+++.+||.|++.+....+... ....+..+++++++++.+++.+.. ++.+ ..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCC
Confidence 311 2356999999998889999999998764332111 122334456688999999997654 3443 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 998 gGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
|||||||+||+||+.+|++|+|||||+|||+.+...+.+.|++++++|+|||++||+++ .+.+.||++++|++ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999888999999999986 57778999999985 79999
Q ss_pred EcCCCC
Q 000529 1078 VGPLGH 1083 (1441)
Q Consensus 1078 ~G~~~~ 1083 (1441)
.|+..+
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 998754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=367.93 Aligned_cols=209 Identities=24% Similarity=0.388 Sum_probs=174.9
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++|+|+++.+. +++++|+|+|++++||+.+||+||||||||||+++|+|.. + .+|+|.+||.+.
T Consensus 349 ~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i 413 (588)
T PRK11174 349 TIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIEL 413 (588)
T ss_pred eEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEec
Confidence 589999986542 1246999999999999999999999999999999999987 4 379999999887
Q ss_pred Cc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-------LRQSLVGLPG 992 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 992 (1441)
.+ ..+++.++||+|++.++. -|++||+.++. ++.+. +.++++++..++.+ -.|+.+|..|
T Consensus 414 ~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 414 RELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred ccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 54 456788999999998886 59999998752 12333 34566677766654 2367777654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 993 ~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
..||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +++|+|+++|+++ ..+.+|++++|++
T Consensus 484 -~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~- 558 (588)
T PRK11174 484 -AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD- 558 (588)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC-
Confidence 4699999999999999999999999999999999999999999999885 5899999999985 5678999999985
Q ss_pred cEEEEEcCC
Q 000529 1073 GREVYVGPL 1081 (1441)
Q Consensus 1073 G~~v~~G~~ 1081 (1441)
|+++..|+.
T Consensus 559 G~i~e~G~~ 567 (588)
T PRK11174 559 GQIVQQGDY 567 (588)
T ss_pred CeEeecCCH
Confidence 899999874
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=321.00 Aligned_cols=219 Identities=20% Similarity=0.228 Sum_probs=174.0
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc---eEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 919 (1441)
.+.++|+++.+. ++.+|+|+|++|++|++++|+||||||||||+++|+|..++. +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 367888887653 246999999999999999999999999999999999976531 2369999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 994 (1441)
.+... ...++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+........ ...
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLHK-SGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhhC-Ccc
Confidence 87532 1345679999999988875 999999887543311 11222345577788888875321111111 245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 995 ~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 699999999999999999999999999999999999999999999985 5899999999986 57788999999974 89
Q ss_pred EEEEcCC
Q 000529 1075 EVYVGPL 1081 (1441)
Q Consensus 1075 ~v~~G~~ 1081 (1441)
+++.|+.
T Consensus 224 i~~~~~~ 230 (251)
T PRK14249 224 LVEYGRT 230 (251)
T ss_pred EEEeCCH
Confidence 9999875
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=326.75 Aligned_cols=218 Identities=23% Similarity=0.388 Sum_probs=174.4
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++.++ +++.+|+|+|++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEh
Confidence 478889887763 124699999999999999999999999999999999998653 579999999876
Q ss_pred CccccceEEEEeccCCCCC--CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000529 923 KQETFARISGYCEQNDIHS--PFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1441)
Q Consensus 923 ~~~~~~~~~gyv~Q~~~~~--~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 999 (1441)
.....++.++|++|++.+. ...+++|++.++...... ........++.++++++.+||.+..++.++ .||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG-----ELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 4322234689999997653 234788888654211000 011112234457889999999887777654 59999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEc
Q 000529 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1441)
Q Consensus 1000 qrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G 1079 (1441)
||||++|||||+.+|+||+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999986 577889999776 4 8999999
Q ss_pred CCC
Q 000529 1080 PLG 1082 (1441)
Q Consensus 1080 ~~~ 1082 (1441)
+..
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 864
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=320.17 Aligned_cols=207 Identities=21% Similarity=0.309 Sum_probs=167.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCeeCCCCC-----ccceEEEEcCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEFV-----PERTAAYISQHDNH 237 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1441)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+|. ...+|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 35899999999999999999999999999999999998751 013899999999875321 14569999999887
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc----cccc
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----ICAD 313 (1441)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 313 (1441)
++ +||+||+.|.....+... ..+....++.+++.+||. +..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKD---------------------------------KKELDKIVEWALKKAALWDEVKDDLK 142 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCc---------------------------------HHHHHHHHHHHHHHcCCchhhhhHhh
Confidence 77 899999998754322100 001112345678888874 3345
Q ss_pred cccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcC
Q 000529 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1441)
Q Consensus 314 t~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D 393 (1441)
+.++ .|||||||||+||++++.+|++++|||||+|||+.++.++.+.|+++.. + .++++++|+.+++.+++|
T Consensus 143 ~~~~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d 214 (251)
T PRK14270 143 KSAL-----KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNMQQASRVSD 214 (251)
T ss_pred CCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCHHHHHHhcC
Confidence 5444 4999999999999999999999999999999999999999999998743 3 567778888999999999
Q ss_pred eEEEecCCeEEEEcCHHHHH
Q 000529 394 DIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1441)
++++|++|++++.|+.+++.
T Consensus 215 ~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 215 YTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEEEEECCeEEEeCCHHHHh
Confidence 99999999999999998874
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=311.43 Aligned_cols=196 Identities=27% Similarity=0.404 Sum_probs=172.8
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC-------ccceEEEEcCCCCCCCCCC
Q 000529 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-------PERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 170 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 242 (1441)
++++..+.-.+|||-|+||||||||+|+|+|+..|+ +|.|.+||..+.+.. .+|++|||+|+..+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 577777775799999999999999999999999999 999999998764321 2588999999999999999
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1441)
|+-||.|+..... ....+++...||++|..+.+++.
T Consensus 93 VrgNL~YG~~~~~----------------------------------------~~~fd~iv~lLGI~hLL~R~P~~---- 128 (352)
T COG4148 93 VRGNLRYGMWKSM----------------------------------------RAQFDQLVALLGIEHLLDRYPGT---- 128 (352)
T ss_pred Eecchhhhhcccc----------------------------------------hHhHHHHHHHhCcHHHHhhCCCc----
Confidence 9999999854210 01246788999999999999877
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 GLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~ 402 (1441)
|||||||||+|||||.+.|++|+||||.+.||-....+|+-.|.++..+ -..-|+.++|..+|+.+++|+|++|++|+
T Consensus 129 -LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e-~~IPIlYVSHS~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 129 -LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDE-INIPILYVSHSLDEVLRLADRVVVLENGK 206 (352)
T ss_pred -cCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHh-cCCCEEEEecCHHHHHhhhheEEEecCCe
Confidence 9999999999999999999999999999999999999999999988653 45667889999999999999999999999
Q ss_pred EEEEcCHHHHHH
Q 000529 403 IVYQGPRELVLE 414 (1441)
Q Consensus 403 iv~~G~~~~~~~ 414 (1441)
+...|+.+++..
T Consensus 207 V~A~g~~e~v~~ 218 (352)
T COG4148 207 VKASGPLEEVWG 218 (352)
T ss_pred EEecCcHHHHhc
Confidence 999999998853
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=314.63 Aligned_cols=201 Identities=23% Similarity=0.293 Sum_probs=171.2
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|++++++ ++.+|+++|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 478889887642 24699999999999999999999999999999999998653 479999999876
Q ss_pred CccccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000529 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1441)
Q Consensus 923 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1002 (1441)
.....++.++|++|++.+++.+|+.||+.+....+. . ..++.++++++.++|.+..++.+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543344568999999988888999999987654321 1 12345678899999987777764 469999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 1003 Rv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999999888999999999987 5888999999985
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=325.67 Aligned_cols=216 Identities=23% Similarity=0.314 Sum_probs=175.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC--------ccceEEEEcCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--------PERTAAYISQHDN 236 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--------~~~~~~yv~Q~d~ 236 (1441)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 45999999999999999999999999999999999999875223699999999875321 1346999999988
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccc
Q 000529 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1441)
+++.+||+||+.++...... ..... ... ...+....++.+++.+||++..|+.+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~---------~~~~~--~~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGSTP---------FWRTC--FSW---------------FTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhccccc---------chhhh--ccc---------------ccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 89999999999876421100 00000 000 00111234677899999998888877
Q ss_pred ccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEE
Q 000529 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1441)
Q Consensus 317 g~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vi 396 (1441)
++ |||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++.+ .++++|++++|+.+++.+++|+|+
T Consensus 151 ~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tvii~tH~~~~~~~~~d~i~ 224 (262)
T PRK09984 151 ST-----LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQ-NDGITVVVTLHQVDYALRYCERIV 224 (262)
T ss_pred cc-----cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEE
Confidence 76 999999999999999999999999999999999999999999998764 335777778999999999999999
Q ss_pred EecCCeEEEEcCHHHH
Q 000529 397 LLSDGQIVYQGPRELV 412 (1441)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (1441)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998764
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=322.05 Aligned_cols=219 Identities=24% Similarity=0.289 Sum_probs=177.3
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCC---ceEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 919 (1441)
.+.++|++++++ ++.+|+|||++|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 478899988763 34699999999999999999999999999999999997542 13589999999
Q ss_pred ccCCc----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000529 920 YPKKQ----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG 995 (1441)
Q Consensus 920 ~~~~~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 995 (1441)
.+... ...++.++|++|++.+++ .|++||+.+...... ..+.++.+..+.++++.+++.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87642 124567999999988887 899999987643221 12333444556788999998653221111 12456
Q ss_pred CCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEE
Q 000529 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1441)
Q Consensus 996 LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~ 1075 (1441)
||||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999976 589999999986 57788999999985 899
Q ss_pred EEEcCC
Q 000529 1076 VYVGPL 1081 (1441)
Q Consensus 1076 v~~G~~ 1081 (1441)
+..|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 999885
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=312.88 Aligned_cols=199 Identities=22% Similarity=0.297 Sum_probs=164.3
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 45677776652 34699999999999999999999999999999999998663 4799999998754
Q ss_pred c--cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000529 924 Q--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1441)
Q Consensus 924 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1001 (1441)
. ...++.++|++|++.+++.+|+.|++.+....+. . ..++.++++++.+||.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHH
Confidence 2 2345678999999988889999999988654321 1 12346788999999987777654 46999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEE
Q 000529 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1069 (1441)
Q Consensus 1002 qRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL 1069 (1441)
||++||+||+++|++|+|||||+|||+.++..+++.|++++++|.|||++||+++ .+.+.-++++++
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999999999999999999999877899999999986 344433555544
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=354.47 Aligned_cols=212 Identities=21% Similarity=0.317 Sum_probs=180.8
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|++++++ ++.+|+||||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 378899988763 34699999999999999999999999999999999998653 479999999876
Q ss_pred Ccc---c-cceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000529 923 KQE---T-FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 923 ~~~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 998 (1441)
... . .++.+||++|++.+++.+||+|++.+.... ....++.++++++.++|.+..++.++ .|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAG-----SLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChh-----hCCH
Confidence 431 1 124589999999999999999999875311 12334567899999999887777654 5999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~ 1078 (1441)
||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999888999999999986 47788999999985 899999
Q ss_pred cCCCC
Q 000529 1079 GPLGH 1083 (1441)
Q Consensus 1079 G~~~~ 1083 (1441)
|+..+
T Consensus 222 g~~~~ 226 (510)
T PRK15439 222 GKTAD 226 (510)
T ss_pred cChHH
Confidence 98753
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=320.03 Aligned_cols=215 Identities=23% Similarity=0.303 Sum_probs=173.0
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCC--Cc-eEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 919 (1441)
.+.++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|... +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 377888887653 2469999999999999999999999999999999999643 11 2479999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 990 (1441)
.+... ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.+.++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87631 134567999999988887 6999999886543321 112222345677888887642 23333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ .+.+.+|++++|+
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999976 589999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000529 1071 RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ~gG~~v~~G~~ 1081 (1441)
+ |+++..|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14255 222 T-GNLIEFADT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 899998875
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=319.16 Aligned_cols=208 Identities=21% Similarity=0.290 Sum_probs=169.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcceEEEECCeeCCCC-----CccceEEEEcCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1441)
..+|+|+|++|++||+++|+||||||||||+++|+|.++ |+...+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 359999999999999999999999999999999999986 3111289999999987532 124579999999888
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc----ccc
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CAD 313 (1441)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~d 313 (1441)
++.+||+||+.++.+..+... ..+....++.+++.+||.. ..+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVN---------------------------------RSEADEIVESSLKRVALWDEVKDRLK 143 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCC---------------------------------HHHHHHHHHHHHHHcCCchhhhHHhh
Confidence 999999999987644221000 0001123567788888854 234
Q ss_pred cccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcC
Q 000529 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1441)
Q Consensus 314 t~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D 393 (1441)
+.++ .|||||||||+||++++.+|++|+|||||+|||..++..+.+.|+++.. + ++|++++|+.+++.++||
T Consensus 144 ~~~~-----~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d 215 (252)
T PRK14256 144 SNAM-----ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSD 215 (252)
T ss_pred CCcC-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCC
Confidence 4444 4999999999999999999999999999999999999999999998743 3 567778899999999999
Q ss_pred eEEEecCCeEEEEcCHHHHH
Q 000529 394 DIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1441)
++++|++|+++..|+.+++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 216 YTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=316.31 Aligned_cols=195 Identities=25% Similarity=0.389 Sum_probs=164.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCC--C---ccceEEEEcCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF--V---PERTAAYISQHDNHIG 239 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~~~~ 239 (1441)
.++|+++|++++||++++|+|||||||||||++|+|.++|+ +|+|.++|+++... . .++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 45999999999999999999999999999999999999987 99999999987421 1 1357999999998888
Q ss_pred CCCHHHHHHHHhH-hcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 240 EMTVRETLAFAAR-CQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 240 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
.+||+||+.++.. ..+.. ..+....++.+++.+||++..++.+.+
T Consensus 90 ~~t~~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 135 (213)
T cd03262 90 HLTVLENITLAPIKVKGMS----------------------------------KAEAEERALELLEKVGLADKADAYPAQ 135 (213)
T ss_pred CCcHHHHHHhHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCHhHhhhCccc
Confidence 9999999988642 11100 001122356788999998888887765
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
|||||||||+||++++.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++|+.+++.+++|++++|
T Consensus 136 -----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 136 -----LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-E-GMTMVVVTHEMGFAREVADRVIFM 208 (213)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998754 3 556777889999999999999999
Q ss_pred cCCeE
Q 000529 399 SDGQI 403 (1441)
Q Consensus 399 ~~G~i 403 (1441)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=311.92 Aligned_cols=195 Identities=27% Similarity=0.323 Sum_probs=165.0
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
+++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccc
Confidence 4567776542 34699999999999999999999999999999999998653 47999999987532
Q ss_pred --cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000529 925 --ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1441)
Q Consensus 925 --~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1002 (1441)
..+++.++|++|++.+++.+|++||+.+.... . .+++++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHH
Confidence 23456799999999888899999999875311 1 2345788999999988777664 469999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEE
Q 000529 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1069 (1441)
Q Consensus 1003 Rv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL 1069 (1441)
|++|||||+.+|++|+|||||+|||+.++..+++.|+++.++|+|+|+++|++. +....+|+++++
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999999999999999999999999999998877999999999986 577788998876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=319.49 Aligned_cols=220 Identities=24% Similarity=0.287 Sum_probs=175.0
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.++ ++.+|+|||+++++||++||+|+||||||||+++|+|.....+..|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 378888887652 2469999999999999999999999999999999999621113579999999876
Q ss_pred Ccc---ccce-EEEEeccCCCCCCCCCHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000529 923 KQE---TFAR-ISGYCEQNDIHSPFVTVYESLFYSAWLRLP----PEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGV 993 (1441)
Q Consensus 923 ~~~---~~~~-~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~----~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 993 (1441)
... ..++ .++|++|++.+++.+|+.|++.+....... ......+..+.+.++++.+++. +..++.++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 2222 478999999999999999998765432110 0111223345678899999997 34555432
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHh-hCeEEEEecC
Q 000529 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1072 (1441)
Q Consensus 994 ~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~-~D~vllL~~g 1072 (1441)
.+|||||||||+||+||+.+|+||+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|+ +
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~-~ 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQ-N 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEe-C
Confidence 249999999999999999999999999999999999999999999999877999999999976 34444 79999997 4
Q ss_pred cEEEEEcCC
Q 000529 1073 GREVYVGPL 1081 (1441)
Q Consensus 1073 G~~v~~G~~ 1081 (1441)
|++++.|+.
T Consensus 228 G~i~~~~~~ 236 (252)
T CHL00131 228 GKIIKTGDA 236 (252)
T ss_pred CEEEEecCh
Confidence 899999986
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=318.14 Aligned_cols=205 Identities=19% Similarity=0.262 Sum_probs=167.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~---~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~ 238 (1441)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++ |+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~ 91 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKI---DGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCC---ceEEEECCEecccCCHHHHhhhEEEEecCCccc
Confidence 368999999999999999999999999999999999975 45 8999999998865422 35799999998777
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc----cccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CADT 314 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 314 (1441)
+ .||+||+.++...++.... .......++.+++.+||.. ..+.
T Consensus 92 ~-~tv~eni~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 138 (246)
T PRK14269 92 V-KSIYENISYAPKLHGMIKN--------------------------------KDEEEALVVDCLQKVGLFEEVKDKLKQ 138 (246)
T ss_pred c-ccHHHHhhhHHhhcCcccC--------------------------------hHHHHHHHHHHHHHcCCChhhhHHhcC
Confidence 6 6999999986543211000 0011223567889999953 2333
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
.+ +.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. . ++++++++|+.+++.+++|+
T Consensus 139 ~~-----~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~-~~tiii~tH~~~~~~~~~d~ 210 (246)
T PRK14269 139 NA-----LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS--H-NLSMIMVTHNMQQGKRVADY 210 (246)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--C-CCEEEEEecCHHHHHhhCcE
Confidence 33 4599999999999999999999999999999999999999999999863 2 46777788999999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 000529 395 IILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1441)
+++|++|++++.|+.+++.
T Consensus 211 i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 211 TAFFHLGELIEFGESKEFF 229 (246)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=322.79 Aligned_cols=225 Identities=24% Similarity=0.312 Sum_probs=178.8
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|+++.+.... ..+. ..++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 4 l~~~nl~~~~~~~~---~~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSGK-HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---cccc-cCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 67788887763100 0000 013579999999999999999999999999999999999765 35899999998754
Q ss_pred cc------ccceEEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000529 924 QE------TFARISGYCEQND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVN 994 (1441)
Q Consensus 924 ~~------~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 994 (1441)
.. ..++.++|++|++ .+.+..|+.|++.+..... ......+....++++++.+|+. +..++.+ .
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRP-----P 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCC-----c
Confidence 21 2356799999997 3567789999987653211 1123344455688999999996 4556553 4
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCc
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1441)
Q Consensus 995 ~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG 1073 (1441)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.+.+|++++|+ +|
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~-~G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD-NG 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE-CC
Confidence 69999999999999999999999999999999999999999999999765 899999999986 5777899999997 48
Q ss_pred EEEEEcCCCC
Q 000529 1074 REVYVGPLGH 1083 (1441)
Q Consensus 1074 ~~v~~G~~~~ 1083 (1441)
++++.|+..+
T Consensus 229 ~i~~~g~~~~ 238 (268)
T PRK10419 229 QIVETQPVGD 238 (268)
T ss_pred EEeeeCChhh
Confidence 9999998643
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=320.21 Aligned_cols=206 Identities=20% Similarity=0.313 Sum_probs=166.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcceEEEECCeeCCCC-----CccceEEEEcCCCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1441)
++|+|+|++|++||+++|+|||||||||||++|+|.++ |+...+|+|+++|+++... ..++.++|++|++.++
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 58999999999999999999999999999999999987 3212389999999987531 1135799999998877
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc----cccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CADT 314 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 314 (1441)
+. ||+||+.|..+..+... .++....++.+++.+||.+ ..++
T Consensus 106 ~~-tv~enl~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~l~~ 151 (259)
T PRK14274 106 PQ-SIFDNVAYGPRIHGTKN---------------------------------KKKLQEIVEKSLKDVALWDEVKDRLHT 151 (259)
T ss_pred cc-CHHHHHHhHHHhcCCCC---------------------------------HHHHHHHHHHHHHHcCCchhhhhhhhC
Confidence 75 99999988644321100 0011123556788888853 2344
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
.++ .||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++. . +.+++.++|+.+++.+++|+
T Consensus 152 ~~~-----~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~-~~tiiivtH~~~~~~~~~d~ 223 (259)
T PRK14274 152 QAL-----SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK--E-KYTIVIVTHNMQQAARVSDQ 223 (259)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--c-CCEEEEEEcCHHHHHHhCCE
Confidence 444 499999999999999999999999999999999999999999999863 2 35677788889999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 000529 395 IILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1441)
+++|++|+++.+|+++++.
T Consensus 224 i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 224 TAFFYMGELVECNDTNKMF 242 (259)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999998764
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=324.14 Aligned_cols=209 Identities=26% Similarity=0.389 Sum_probs=161.7
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
+++|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 68 (237)
T cd03252 2 TFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLAL 68 (237)
T ss_pred EEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehHh
Confidence 56777766531 124699999999999999999999999999999999998653 47999999987532
Q ss_pred ---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCcccccccccCCCCC
Q 000529 925 ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRK-----MFIEEVMELV--ELKPLRQSLVGLPGVN 994 (1441)
Q Consensus 925 ---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~vg~~~~~ 994 (1441)
...++.++|++|++.+++ .||.||+.+... ........ ...++.++.+ ++....+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~ 137 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GA 137 (237)
T ss_pred cCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CC
Confidence 234567999999987764 699999976421 11111111 0112333333 333333332 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 995 ~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|+++ .+ +.+|++++|++ |+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~-G~ 213 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEK-GR 213 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999964 899999999986 34 56999999985 89
Q ss_pred EEEEcCC
Q 000529 1075 EVYVGPL 1081 (1441)
Q Consensus 1075 ~v~~G~~ 1081 (1441)
+++.|+.
T Consensus 214 i~~~~~~ 220 (237)
T cd03252 214 IVEQGSH 220 (237)
T ss_pred EEEEcCH
Confidence 9999875
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=318.30 Aligned_cols=206 Identities=22% Similarity=0.331 Sum_probs=166.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcceEEEECCeeCCCC-----CccceEEEEcCCCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1441)
++|+|+|+++++||+++|+||||||||||+++|+|..+ |+...+|+|.++|+++... ..++.++|++|++.++
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 58999999999999999999999999999999999853 5222389999999987432 1245799999998777
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc----cccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CADT 314 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 314 (1441)
+ +||+||+.++....+... .+.....++.+++.+|+.. ..+.
T Consensus 99 ~-~tv~enl~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (252)
T PRK14239 99 P-MSIYENVVYGLRLKGIKD---------------------------------KQVLDEAVEKSLKGASIWDEVKDRLHD 144 (252)
T ss_pred c-CcHHHHHHHHHHHcCCCc---------------------------------HHHHHHHHHHHHHHcCCchhHHHHHhc
Confidence 6 899999998754322100 0001123456778888743 2344
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
.++ .|||||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++.+ + .+|+.++|+.+++.+++|+
T Consensus 145 ~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~ 216 (252)
T PRK14239 145 SAL-----GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQASRISDR 216 (252)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHHHhCCE
Confidence 444 4999999999999999999999999999999999999999999998742 3 5677788999999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 000529 395 IILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1441)
|++|++|++++.|+.+++.
T Consensus 217 i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 217 TGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999998874
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=324.29 Aligned_cols=213 Identities=23% Similarity=0.276 Sum_probs=173.6
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCC---ceEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 919 (1441)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478899987763 24699999999999999999999999999999999997542 13579999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 990 (1441)
.+... ...++.++|++|++.+++. ||.||+.+....+. ... ..++.++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87532 2345679999999888775 99999987654332 122 23456888999999853 33433
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEE-EE
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF-LM 1069 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vl-lL 1069 (1441)
+..||||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|+++ +|
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 346999999999999999999999999999999999999999999999976 489999999986 5677899976 45
Q ss_pred ecCcEEEEEcCC
Q 000529 1070 KRGGREVYVGPL 1081 (1441)
Q Consensus 1070 ~~gG~~v~~G~~ 1081 (1441)
+ +|+++..|+.
T Consensus 254 ~-~G~i~~~g~~ 264 (285)
T PRK14254 254 T-GGELVEFDDT 264 (285)
T ss_pred e-CCEEEEeCCH
Confidence 6 5899998875
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=320.27 Aligned_cols=211 Identities=20% Similarity=0.269 Sum_probs=167.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCeeCCCCC-----ccceEEEEcCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEFV-----PERTAAYISQHDNH 237 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1441)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|. ...+|+|.++|+++.... .++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 35899999999999999999999999999999999998641 013899999999875321 14579999999877
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccc
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1441)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1441)
++ .||+||+.++.+..+... .++....++.+++.+||.+..+....
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKD---------------------------------KKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCC---------------------------------HHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 76 699999998654221100 00112335667888888543222111
Q ss_pred cccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000529 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1441)
Q Consensus 318 ~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vil 397 (1441)
...+.||||||||++|||+++.+|++|+|||||+|||+.++..+.+.|+++. . +.+|+.++|+.+++.++||++++
T Consensus 159 -~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~~tiii~tH~~~~~~~~~d~i~~ 234 (267)
T PRK14237 159 -KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK--K-NYTIIIVTHNMQQAARASDYTAF 234 (267)
T ss_pred -CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--c-CCEEEEEecCHHHHHHhcCEEEE
Confidence 2334599999999999999999999999999999999999999999999873 3 36677788889999999999999
Q ss_pred ecCCeEEEEcCHHHHH
Q 000529 398 LSDGQIVYQGPRELVL 413 (1441)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1441)
|++|++++.|+++++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 235 FYLGDLIEYDKTRNIF 250 (267)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999998764
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=318.49 Aligned_cols=206 Identities=18% Similarity=0.262 Sum_probs=167.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC---CCCCCCcceEEEECCeeCCCCC-----ccceEEEEcCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK---LDPSLKVSGRVTYNGHNMDEFV-----PERTAAYISQHDN 236 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~---l~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~ 236 (1441)
+++|+|+|+++++||+++|+||||||||||+++|+|. .++. ..+|+|.++|+++.... .++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 3589999999999999999999999999999999997 3331 12899999999875421 1357999999987
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccc----c
Q 000529 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDIC----A 312 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~----~ 312 (1441)
+++ .||+||+.++.+..+... .++....++++++.+||.+. .
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKD---------------------------------NAFIRQRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCc---------------------------------HHHHHHHHHHHHHHcCCCcchhhhh
Confidence 776 699999998754322100 00011235678888998642 3
Q ss_pred ccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhc
Q 000529 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLF 392 (1441)
Q Consensus 313 dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~ 392 (1441)
++.++ .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. . +.+|+.++|+.+++.+++
T Consensus 141 ~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~~tiiivtH~~~~~~~~~ 212 (250)
T PRK14245 141 KESAF-----ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK--K-DYTIVIVTHNMQQAARVS 212 (250)
T ss_pred hCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEeCCHHHHHhhC
Confidence 44444 499999999999999999999999999999999999999999999873 3 356777889999999999
Q ss_pred CeEEEecCCeEEEEcCHHHHH
Q 000529 393 DDIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 393 D~vilL~~G~iv~~G~~~~~~ 413 (1441)
|++++|++|++++.|+++++.
T Consensus 213 d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 213 DKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred CEEEEEECCEEEEECCHHHHh
Confidence 999999999999999998874
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=322.39 Aligned_cols=214 Identities=20% Similarity=0.230 Sum_probs=173.7
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCc---eEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 919 (1441)
.+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..... +.+|+|.++|
T Consensus 20 ~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 86 (274)
T PRK14265 20 VFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRD 86 (274)
T ss_pred eEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECC
Confidence 588899987753 246999999999999999999999999999999999975321 2479999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 990 (1441)
.+... ...++.++|++|+..+++. |+.||+.+....+. .. ...++.+++.++.+++.. ..++.
T Consensus 87 ~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 158 (274)
T PRK14265 87 RNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK--- 158 (274)
T ss_pred EecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC---
Confidence 87532 2345679999999887764 99999987643321 11 122344677788888742 23333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|+
T Consensus 159 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 234 (274)
T PRK14265 159 --GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFN 234 (274)
T ss_pred --cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 356999999999999999999999999999999999999999999999965 799999999986 5778999999997
Q ss_pred --------cCcEEEEEcCC
Q 000529 1071 --------RGGREVYVGPL 1081 (1441)
Q Consensus 1071 --------~gG~~v~~G~~ 1081 (1441)
+.|++++.|+.
T Consensus 235 ~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 235 TEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred cccccccccCceEEEeCCH
Confidence 25899999987
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=324.27 Aligned_cols=201 Identities=20% Similarity=0.207 Sum_probs=148.1
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.+.+|++.++. +.-+++.+++..+..-...+++|+||+||||+++++.|...+ ..|.+.+.+
T Consensus 362 ~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~~--- 425 (582)
T KOG0062|consen 362 NLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRHP--- 425 (582)
T ss_pred eeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeecc---
Confidence 4677777755431 122689999999999999999999999999999999996542 356555433
Q ss_pred CccccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHH
Q 000529 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-RQSLVGLPGVNGLSTEQR 1001 (1441)
Q Consensus 923 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqr 1001 (1441)
++.++|-.|..+-+-.+.|.+- .+-...+ | ... ++.+++-+..+||..- +... +.+||||||
T Consensus 426 -----r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~-p-G~~----~ee~r~hl~~~Gl~g~la~~s-----i~~LSGGQK 488 (582)
T KOG0062|consen 426 -----RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF-P-GKT----EEEIRRHLGSFGLSGELALQS-----IASLSGGQK 488 (582)
T ss_pred -----cceecchhHhhhhHHHHHhHHH-HHHHHhC-C-CCC----HHHHHHHHHhcCCCchhhhcc-----ccccCCcch
Confidence 4568999997655444444442 2222332 1 222 2335677889999753 2222 457999999
Q ss_pred HHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcC
Q 000529 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1441)
Q Consensus 1002 qRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~ 1080 (1441)
-||++|.....+|.+|+|||||+.||..+-..+-+.|++. +..||++||+.+ -+-..|+++.+.++|.-.-+.|.
T Consensus 489 srvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ieg~ 563 (582)
T KOG0062|consen 489 SRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVEDGKVTPIEGG 563 (582)
T ss_pred hHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcCCcEEeeecc
Confidence 9999999999999999999999999999999999999876 468999999975 36678999999986433334444
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=323.19 Aligned_cols=215 Identities=21% Similarity=0.215 Sum_probs=172.9
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCC--C-ceEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 919 (1441)
.+.++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 488999988763 2358999999999999999999999999999999999754 1 13589999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK----PLRQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 990 (1441)
.+... ...++.++|++|++.+++ .|++||+.+....+. ....+..++.+.++++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87632 124567999999988877 599999988654321 112222344567777777543 223333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 356999999999999999999999999999999999999999999999975 799999999986 4678899999998
Q ss_pred cCcEEEEEcCC
Q 000529 1071 RGGREVYVGPL 1081 (1441)
Q Consensus 1071 ~gG~~v~~G~~ 1081 (1441)
+ |++++.|+.
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 5 899999875
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=359.37 Aligned_cols=209 Identities=29% Similarity=0.435 Sum_probs=169.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCC
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 240 (1441)
++++|+|+|+.++|||.++|+||||||||||++.|.|+++|+ +|+|.+||.++.+... ++.++||+|++.+|.
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~- 416 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS- 416 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-
Confidence 456999999999999999999999999999999999999998 9999999999987755 578999999887776
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1441)
.||+|||.++..-. . .+.+.++++. . ..++.+. .|++..||.|| +.
T Consensus 417 ~TI~~NI~~g~~~a---t-~eei~~a~k~---------------------a------~~~d~I~--~lp~g~dt~vg-e~ 462 (567)
T COG1132 417 GTIRENIALGRPDA---T-DEEIEEALKL---------------------A------NAHEFIA--NLPDGYDTIVG-ER 462 (567)
T ss_pred ccHHHHHhcCCCCC---C-HHHHHHHHHH---------------------h------ChHHHHH--hCcccccceec-CC
Confidence 89999999974310 0 0111111110 0 1122222 45778899999 45
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~ 400 (1441)
+..||||||||++||||++.+|++|+||||||+||+.+...|.+.++++. +++|+++ +.|..+.+.+ +|+|++|++
T Consensus 463 G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~ii-IaHRlsti~~-aD~IiVl~~ 538 (567)
T COG1132 463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLI-IAHRLSTIKN-ADRIIVLDN 538 (567)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEE-EeccHhHHHh-CCEEEEEEC
Confidence 66799999999999999999999999999999999999999999998654 3456666 7776655555 999999999
Q ss_pred CeEEEEcCHHHHHH
Q 000529 401 GQIVYQGPRELVLE 414 (1441)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1441)
|++++.|+++++..
T Consensus 539 G~i~e~G~h~eLl~ 552 (567)
T COG1132 539 GRIVERGTHEELLA 552 (567)
T ss_pred CEEEEecCHHHHHH
Confidence 99999999999875
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=352.31 Aligned_cols=217 Identities=29% Similarity=0.339 Sum_probs=180.0
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++.++ ++.+|+||||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 377888887653 34699999999999999999999999999999999998653 479999999876
Q ss_pred Ccc----ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000529 923 KQE----TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 923 ~~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 998 (1441)
... ..++.+||++|++.+++.+||.||+.+....+........+.++.++++++.++|.+..+..+ ..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCH
Confidence 421 234679999999988999999999987532111111223344567889999999987666654 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~ 1078 (1441)
||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||++||++. .+.+.||++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999878999999999986 57788999999985 788877
Q ss_pred cCC
Q 000529 1079 GPL 1081 (1441)
Q Consensus 1079 G~~ 1081 (1441)
++.
T Consensus 222 ~~~ 224 (501)
T PRK11288 222 FDD 224 (501)
T ss_pred cCc
Confidence 653
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=321.68 Aligned_cols=207 Identities=21% Similarity=0.321 Sum_probs=168.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcceEEEECCeeCCCC-----CccceEEEEcCCCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL--KVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1441)
++|+|+|+++++||+++|+|||||||||||++|+|.++|.- ..+|+|.++|+++... ..++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 58999999999999999999999999999999999987410 1289999999987421 1235799999998889
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc----ccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----ICADT 314 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1441)
+.+||+||+.++....+... .++....++.+++.+||. +..++
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRN---------------------------------KKDLDELVEKSLRGANLWNEVKDRLDK 144 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCC---------------------------------HHHHHHHHHHHHHHcCCchhhhhHhhC
Confidence 99999999988754321000 001122456778888884 34455
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. .+ .+|+.++|+.+++.+++|+
T Consensus 145 ~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tviivsH~~~~~~~~~d~ 216 (258)
T PRK14241 145 PGGG-----LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK--QD-YTIVIVTHNMQQAARVSDQ 216 (258)
T ss_pred Cccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEecCHHHHHHhCCE
Confidence 5544 99999999999999999999999999999999999999999999874 23 5677788999999999999
Q ss_pred EEEec------CCeEEEEcCHHHHH
Q 000529 395 IILLS------DGQIVYQGPRELVL 413 (1441)
Q Consensus 395 vilL~------~G~iv~~G~~~~~~ 413 (1441)
|++|+ +|++++.|+++++.
T Consensus 217 i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 217 TAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEEecccCCCCceEEecCCHHHHH
Confidence 99996 79999999988764
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=316.17 Aligned_cols=209 Identities=22% Similarity=0.346 Sum_probs=169.3
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++.+. ++++|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 478889887652 3469999999999999999999999999999999999765 3479999999875
Q ss_pred Cc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCH
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLST 998 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSg 998 (1441)
.. ...++.++|++|++.+++ .|++||+.+....+.. . ..++.++++++.+++. ...++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKNI-----AELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCCc-----ccCCH
Confidence 32 124567899999988877 5999999875443211 1 1234567899999996 4555553 46999
Q ss_pred HHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 999 GqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|+++ .+ +.+|++++|++.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 9999999999999999999999999999999999999999998764 899999999986 34 57999999964444444
Q ss_pred Ec
Q 000529 1078 VG 1079 (1441)
Q Consensus 1078 ~G 1079 (1441)
.|
T Consensus 219 ~~ 220 (225)
T PRK10247 219 EA 220 (225)
T ss_pred hh
Confidence 44
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=321.67 Aligned_cols=202 Identities=21% Similarity=0.309 Sum_probs=164.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCcceEEEECCeeCCCC--C---ccceEEEEcCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PSLKVSGRVTYNGHNMDEF--V---PERTAAYISQHD 235 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~-----~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d 235 (1441)
.+|+|+|++|++||+++|+|||||||||||++|+|.++ |+ +|+|.++|+++... . .++.++|++|++
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~---~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 103 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL---KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP 103 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCC---ceEEEECCEEcccccCCHHHHhhceEEEccCC
Confidence 58999999999999999999999999999999999987 34 89999999987421 1 135699999998
Q ss_pred CCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc----cc
Q 000529 236 NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----IC 311 (1441)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~ 311 (1441)
.+++ .||+||+.+++...+.. . +....++.+++.+++. +.
T Consensus 104 ~l~~-~tv~enl~~~~~~~~~~-~----------------------------------~~~~~~~~~l~~~~l~~~l~~~ 147 (269)
T PRK14259 104 NPFP-KSIYENIAFGARINGYT-G----------------------------------DMDELVERSLRKAAVWDECKDK 147 (269)
T ss_pred ccch-hhHHHHHhhhhhhcCCc-H----------------------------------HHHHHHHHHHHHhCCcchhhhh
Confidence 8777 59999999876433210 0 0011234566777663 33
Q ss_pred cccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhh
Q 000529 312 ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL 391 (1441)
Q Consensus 312 ~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l 391 (1441)
.++.+. .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. . +.+|++++|+.+++.++
T Consensus 148 ~~~~~~-----~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~-~~tiiivtH~~~~~~~~ 219 (269)
T PRK14259 148 LNESGY-----SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK--K-NFTIVIVTHNMQQAVRV 219 (269)
T ss_pred hCCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--c-CCEEEEEeCCHHHHHHh
Confidence 455544 499999999999999999999999999999999999999999999863 2 35677789999999999
Q ss_pred cCeEEEecC-----------CeEEEEcCHHHHHH
Q 000529 392 FDDIILLSD-----------GQIVYQGPRELVLE 414 (1441)
Q Consensus 392 ~D~vilL~~-----------G~iv~~G~~~~~~~ 414 (1441)
||++++|++ |++++.|+++++.+
T Consensus 220 ~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 220 SDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred cCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence 999999996 67899999988753
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=351.29 Aligned_cols=207 Identities=23% Similarity=0.315 Sum_probs=174.1
Q ss_pred ceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCcc----ccceEEEEeccCCCCCCC
Q 000529 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE----TFARISGYCEQNDIHSPF 943 (1441)
Q Consensus 868 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~~ 943 (1441)
++.+|+||||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|++.+++.
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 35699999999999999999999999999999999998653 479999999876421 234569999999988889
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCC
Q 000529 944 VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1023 (1441)
Q Consensus 944 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPT 1023 (1441)
+||+||+.+..........+.++..+.++++++.+++.+..++.++ .|||||||||+||+||+.+|++|+|||||
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lA~al~~~p~lllLDEPt 162 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA-----TLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162 (491)
T ss_pred CCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 9999999875321111111233344568899999999877777644 69999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCCC
Q 000529 1024 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1441)
Q Consensus 1024 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~~ 1083 (1441)
+|||+.++..+++.|+++++.|+|||++||+++ ++.+.||++++|++ |+++..|+..+
T Consensus 163 ~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 163 SSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 999999999999999999878999999999986 57788999999985 89999998754
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=321.11 Aligned_cols=213 Identities=28% Similarity=0.383 Sum_probs=172.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-----CCcceEEEECCeeCCCCCc---cceEEEEcCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS-----LKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN 236 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~-----~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~ 236 (1441)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ ...+|+|.++|.++..... ++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 36999999999999999999999999999999999999874 1137999999998764332 346899999977
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccc
Q 000529 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1441)
.++.+||+||+.++...... ... .. ..+....++.+++.+||++..++.+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~--~~~---~~-------------------------~~~~~~~~~~~l~~~~l~~~~~~~~ 143 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHAR--RAG---AL-------------------------THRDGEIAWQALALAGATALVGRDV 143 (272)
T ss_pred CCCCCcHHHHHhhccccccc--ccc---cC-------------------------CHHHHHHHHHHHHHcCcHhhhcCCc
Confidence 66779999999885321000 000 00 0011234567899999988777777
Q ss_pred ccccccCCChhhhhHHHHHHHHh---------cCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhh
Q 000529 317 GDEMRRGVSGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPE 387 (1441)
Q Consensus 317 g~~~~rGLSGGqrkRvsia~al~---------~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~ 387 (1441)
++ |||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|+++.. ..+++|++++|+.++
T Consensus 144 ~~-----LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tviiisH~~~~ 217 (272)
T PRK13547 144 TT-----LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLAR-DWNLGVLAIVHDPNL 217 (272)
T ss_pred cc-----CCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCHHH
Confidence 65 9999999999999999 59999999999999999999999999998754 335667778899999
Q ss_pred HHhhcCeEEEecCCeEEEEcCHHHHH
Q 000529 388 TYNLFDDIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 388 ~~~l~D~vilL~~G~iv~~G~~~~~~ 413 (1441)
+.+++|++++|++|++++.|+.+++.
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHHc
Confidence 99999999999999999999988763
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=312.08 Aligned_cols=192 Identities=28% Similarity=0.421 Sum_probs=163.4
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCC-------ccceEEEEcCCCCCCCCCC
Q 000529 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-------PERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 170 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 242 (1441)
|+|+++++ |+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999998 999999998875311 1357999999998888999
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1441)
|+||+.+...... .. .....++.+++.+||++..++.+++
T Consensus 92 ~~~~l~~~~~~~~------------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 131 (214)
T cd03297 92 VRENLAFGLKRKR------------NR------------------------EDRISVDELLDLLGLDHLLNRYPAQ---- 131 (214)
T ss_pred HHHHHHHHHhhCC------------HH------------------------HHHHHHHHHHHHcCCHhHhhcCccc----
Confidence 9999987642110 00 0112356789999998877777765
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 GLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~ 402 (1441)
||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++. ..+++|++++|+.+++.+++|++++|++|+
T Consensus 132 -LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 132 -LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK-NLNIPVIFVTHDLSEAEYLADRIVVMEDGR 209 (214)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCcEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999999999998764 335667778899999999999999999999
Q ss_pred EEEEc
Q 000529 403 IVYQG 407 (1441)
Q Consensus 403 iv~~G 407 (1441)
++.+|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=320.45 Aligned_cols=207 Identities=23% Similarity=0.345 Sum_probs=171.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCee-----CCCCCc-------cceEEEEc
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN-----MDEFVP-------ERTAAYIS 232 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~-----~~~~~~-------~~~~~yv~ 232 (1441)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 35899999999999999999999999999999999999998 9999999987 654322 23699999
Q ss_pred CCCC--CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc
Q 000529 233 QHDN--HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI 310 (1441)
Q Consensus 233 Q~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 310 (1441)
|++. +++.+|+.||+.+.....+.. . ..+....++++++.+|+..
T Consensus 96 q~~~~~~~~~~~~~~~i~~~~~~~~~~-~--------------------------------~~~~~~~~~~~l~~~~l~~ 142 (258)
T PRK11701 96 QHPRDGLRMQVSAGGNIGERLMAVGAR-H--------------------------------YGDIRATAGDWLERVEIDA 142 (258)
T ss_pred eCcccccCccccHHHHHHHHHHHhccC-c--------------------------------HHHHHHHHHHHHHHcCCCh
Confidence 9863 577889999997643211100 0 0011223567889999974
Q ss_pred -ccccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHH
Q 000529 311 -CADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETY 389 (1441)
Q Consensus 311 -~~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~ 389 (1441)
..++.+++ |||||||||+|||||+.+|++|+|||||+|||..+...+.+.|+++.. ..+.+|+.++|+.+++.
T Consensus 143 ~~~~~~~~~-----LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~isH~~~~~~ 216 (258)
T PRK11701 143 ARIDDLPTT-----FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVR-ELGLAVVIVTHDLAVAR 216 (258)
T ss_pred hHHhCCCcc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHH
Confidence 56776665 999999999999999999999999999999999999999999998754 33567778999999999
Q ss_pred hhcCeEEEecCCeEEEEcCHHHHH
Q 000529 390 NLFDDIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 390 ~l~D~vilL~~G~iv~~G~~~~~~ 413 (1441)
+++|+|++|++|++++.|+++++.
T Consensus 217 ~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 217 LLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999988764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=317.28 Aligned_cols=206 Identities=22% Similarity=0.344 Sum_probs=165.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCcceEEEECCeeCCCC-----CccceEEEEcCCCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP--SLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1441)
++|+|+|+++++||+++|+||||||||||+++|+|.+++ ....+|+|.++|+++... ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 589999999999999999999999999999999998763 112389999999987531 1245799999998777
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc----cccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CADT 314 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 314 (1441)
+ +||+||+.++....+.... .+....++.+++.+++.+ ..++
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~~ 142 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK---------------------------------KKLDEIVEKSLKGAALWDEVKDRLKK 142 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhHHHHhc
Confidence 7 8999999987543321000 001123455677777642 3345
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
.++ .|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. . +.+|+.++|+.+++.+++|+
T Consensus 143 ~~~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~-~~tiii~sH~~~~~~~~~d~ 214 (250)
T PRK14240 143 SAL-----GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK--K-DYTIVIVTHNMQQASRISDK 214 (250)
T ss_pred CCC-----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEEeCHHHHHhhCCE
Confidence 544 499999999999999999999999999999999999999999999873 2 35677788889999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 000529 395 IILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1441)
+++|++|+++..|+.+++.
T Consensus 215 v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 215 TAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=335.00 Aligned_cols=202 Identities=27% Similarity=0.387 Sum_probs=167.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCC
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 240 (1441)
+.++|+|+|+++++||-+||+|++|||||||++.|+|-++|+ +|+|+.||.++..... ++.+++++|.. |+..
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~-hlF~ 425 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRV-HLFS 425 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccch-HHHH
Confidence 347999999999999999999999999999999999999999 9999999999877765 46899999964 6667
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCC-------ccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL-------DICAD 313 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~d 313 (1441)
.|+|+||.++...- .. +.+-++++..|| ++..|
T Consensus 426 ~Tlr~NL~lA~~~A-------------------------sD---------------Eel~~aL~qvgL~~l~~~~p~gl~ 465 (573)
T COG4987 426 GTLRDNLRLANPDA-------------------------SD---------------EELWAALQQVGLEKLLESAPDGLN 465 (573)
T ss_pred HHHHHHHhhcCCCC-------------------------CH---------------HHHHHHHHHcCHHHHHHhChhhhh
Confidence 89999999864211 00 111223444444 34667
Q ss_pred cccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcC
Q 000529 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1441)
Q Consensus 314 t~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D 393 (1441)
|.+|+ .+++||||||||++|||+|..++++++|||||.|||+.|..++++.+.+. .+ +.+++.++|+...+ +.||
T Consensus 466 t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~--~~-~kTll~vTHrL~~l-e~~d 540 (573)
T COG4987 466 TWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEH--AE-GKTLLMVTHRLRGL-ERMD 540 (573)
T ss_pred chhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHH--hc-CCeEEEEecccccH-hhcC
Confidence 88985 67889999999999999999999999999999999999999999999763 33 45556677777665 6799
Q ss_pred eEEEecCCeEEEEcCHHHHHH
Q 000529 394 DIILLSDGQIVYQGPRELVLE 414 (1441)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~~ 414 (1441)
+|++|++|+++++|.++++.+
T Consensus 541 rIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 541 RIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEEEEECCeeeecCCHHhhhc
Confidence 999999999999999999864
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=317.10 Aligned_cols=207 Identities=20% Similarity=0.333 Sum_probs=167.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCeeCCCC-----CccceEEEEcCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1441)
.++|+|+|+++++||+++|+|||||||||||++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 35899999999999999999999999999999999998741 11389999999987532 124579999999887
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc----ccc
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CAD 313 (1441)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~d 313 (1441)
++ +||+||+.++....+... .++....+++.++.+|+.. ..+
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~ 141 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKS---------------------------------KHKLDRIVEESLKKAALWDEVKSELN 141 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCc---------------------------------HHHHHHHHHHHHHHcCCCchhHHHHh
Confidence 77 899999998654321100 0001123456778888753 244
Q ss_pred cccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcC
Q 000529 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1441)
Q Consensus 314 t~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D 393 (1441)
..+ +.||||||||++||+|++.+|++++|||||+|||..++..+.+.|+++. . +.+++.++|+.+++.+++|
T Consensus 142 ~~~-----~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~-~~tili~sH~~~~~~~~~d 213 (250)
T PRK14262 142 KPG-----TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS--E-NYTIVIVTHNIGQAIRIAD 213 (250)
T ss_pred CCh-----hhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh--c-CcEEEEEeCCHHHHHHhCC
Confidence 444 4599999999999999999999999999999999999999999999864 2 3577778888889999999
Q ss_pred eEEEecCCeEEEEcCHHHHH
Q 000529 394 DIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1441)
++++|++|+++..|+.+++.
T Consensus 214 ~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 214 YIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred EEEEEECCEEEEecCHHHHH
Confidence 99999999999999988774
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=367.67 Aligned_cols=205 Identities=27% Similarity=0.387 Sum_probs=164.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1441)
.++|+|+|++++|||.++|+||||||||||+|+|+|+++|+ +|+|.+||+++.+..+ ++.++||+|++.+| +.
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~g 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLM-SG 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccC-cc
Confidence 46899999999999999999999999999999999999998 9999999999987654 47899999988766 56
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1441)
|++|||.++.. . + .+...++++ ..+ .++.++ .|++..||.+|+ .+
T Consensus 542 TI~eNi~~~~~-~---~-~e~i~~al~---~a~------------------------l~~~i~--~lp~G~dt~ige-~G 586 (686)
T TIGR03797 542 SIFENIAGGAP-L---T-LDEAWEAAR---MAG------------------------LAEDIR--AMPMGMHTVISE-GG 586 (686)
T ss_pred cHHHHHhcCCC-C---C-HHHHHHHHH---HcC------------------------cHHHHH--hccccccccccC-CC
Confidence 99999998632 1 0 011111100 000 011111 356678999996 45
Q ss_pred cCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000529 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1441)
Q Consensus 322 rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G 401 (1441)
..||||||||++||||++++|++|+||||||+||+.+..++.+.|++. ++ ++++++|.. +..+.+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~-T~IiItHr~-~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KV-TRIVIAHRL-STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CC-eEEEEecCh-HHHHcCCEEEEEECC
Confidence 779999999999999999999999999999999999999999999863 34 455566655 456779999999999
Q ss_pred eEEEEcCHHHHHH
Q 000529 402 QIVYQGPRELVLE 414 (1441)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1441)
+++++|+++++.+
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=318.51 Aligned_cols=214 Identities=27% Similarity=0.285 Sum_probs=171.8
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCcc--
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP-- 921 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~-- 921 (1441)
+.++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (253)
T TIGR02323 4 LQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSGA 68 (253)
T ss_pred EEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEeccccc
Confidence 67888887653 23589999999999999999999999999999999998653 47999999876
Q ss_pred ---CCcc-------ccceEEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccc
Q 000529 922 ---KKQE-------TFARISGYCEQNDI--HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLV 988 (1441)
Q Consensus 922 ---~~~~-------~~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v 988 (1441)
.... ..++.++|++|++. ..+.+|+.|++.+..... .. .......+.++++++.+++.+ ..++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 146 (253)
T TIGR02323 69 ELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDLP 146 (253)
T ss_pred ccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcCc
Confidence 3221 12346899999874 345678999986543211 11 111233456788999999963 555553
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEE
Q 000529 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 1067 (1441)
Q Consensus 989 g~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vl 1067 (1441)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. .+.+.+|+++
T Consensus 147 -----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~ 220 (253)
T TIGR02323 147 -----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLL 220 (253)
T ss_pred -----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEE
Confidence 469999999999999999999999999999999999999999999998764 899999999986 5677899999
Q ss_pred EEecCcEEEEEcCC
Q 000529 1068 LMKRGGREVYVGPL 1081 (1441)
Q Consensus 1068 lL~~gG~~v~~G~~ 1081 (1441)
+|++ |++++.|+.
T Consensus 221 ~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 221 VMQQ-GRVVESGLT 233 (253)
T ss_pred EEEC-CEEEEECCH
Confidence 9985 899999875
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=318.56 Aligned_cols=198 Identities=26% Similarity=0.369 Sum_probs=168.2
Q ss_pred eeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc---cccceEEEEeccCCCCCCCCCHH
Q 000529 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDIHSPFVTVY 947 (1441)
Q Consensus 871 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~ 947 (1441)
+|+||||++++||+++|+||||||||||+++|+|... .+|+|.++|.+... ...++.++|++|++.+++.+|+.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999764 27999999987643 12345689999998888889999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh-------CCCeeEEe
Q 000529 948 ESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMD 1020 (1441)
Q Consensus 948 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~-------~p~iLlLD 1020 (1441)
||+.+.... ....+...+.++++++.++|.+..++.+ ..||||||||++||+||+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 1122333456789999999987777664 4699999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCC
Q 000529 1021 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1021 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1082 (1441)
|||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|+..
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 218 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRD 218 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999877999999999986 47789999999985 8999998763
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=354.66 Aligned_cols=211 Identities=28% Similarity=0.446 Sum_probs=177.4
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++|+|++|+++. +++++|+|+|++|+|||.+||+|+||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 463 ~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~l 529 (694)
T TIGR03375 463 EIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVDI 529 (694)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEh
Confidence 6899999998842 234699999999999999999999999999999999998763 479999999987
Q ss_pred Cc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-------RQSLVGLPG 992 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 992 (1441)
++ ..+++.++||+|++.+++ .|++||+.++. .+.+ ++.++++++..++.+. .|+.+|+.|
T Consensus 530 ~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G 599 (694)
T TIGR03375 530 RQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGERG 599 (694)
T ss_pred hhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCC----HHHHHHHHHHcChHHHHHhCcccccceecCCC
Confidence 54 456788999999998886 59999997641 1222 2345667777776543 356666544
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 993 ~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
..||||||||++|||||+++|+||+||||||+||+++++.+++.|+++. +++|+|+++|+++ ..+.+|++++|++
T Consensus 600 -~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~- 674 (694)
T TIGR03375 600 -RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN- 674 (694)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC-
Confidence 4699999999999999999999999999999999999999999999886 4799999999985 4678999999985
Q ss_pred cEEEEEcCC
Q 000529 1073 GREVYVGPL 1081 (1441)
Q Consensus 1073 G~~v~~G~~ 1081 (1441)
|++++.|+.
T Consensus 675 G~i~e~G~~ 683 (694)
T TIGR03375 675 GRIVADGPK 683 (694)
T ss_pred CEEEeeCCH
Confidence 899999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=326.84 Aligned_cols=212 Identities=30% Similarity=0.471 Sum_probs=172.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCcc---ceEEEEcCCCCCCCC
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE---RTAAYISQHDNHIGE 240 (1441)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~ 240 (1441)
++++|+|+||.+.|||.++|+||||||||||.++|.|..+|. +|.|.+||.+++.++++ +.+||.||+-.+| .
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF-~ 423 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELF-D 423 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceec-C
Confidence 468999999999999999999999999999999999999998 99999999999887764 7899999975554 5
Q ss_pred CCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccc
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1441)
.||.|||+ |+.. +.|.+...+++...+ ++++ ++.|+..+||.||+ .
T Consensus 424 GTIaeNIa---Rf~~----------------------~~d~~kIieAA~lAg------vHel--Il~lP~GYdT~iG~-~ 469 (580)
T COG4618 424 GTIAENIA---RFGE----------------------EADPEKVIEAARLAG------VHEL--ILRLPQGYDTRIGE-G 469 (580)
T ss_pred CcHHHHHH---hccc----------------------cCCHHHHHHHHHHcC------hHHH--HHhCcCCccCccCC-C
Confidence 79999995 2221 112222222221111 1221 36799999999996 4
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~ 400 (1441)
+.+||||||||+++|||++++|.+++||||.|.||+.-...+.+.|.+. +..++++|+ ++| .+.+...+|+|++|++
T Consensus 470 G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~-k~rG~~vvv-iaH-RPs~L~~~Dkilvl~~ 546 (580)
T COG4618 470 GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA-KARGGTVVV-IAH-RPSALASVDKILVLQD 546 (580)
T ss_pred CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHH-HHcCCEEEE-Eec-CHHHHhhcceeeeecC
Confidence 6779999999999999999999999999999999999999999999875 334555554 544 4678899999999999
Q ss_pred CeEEEEcCHHHHHHHH
Q 000529 401 GQIVYQGPRELVLEFF 416 (1441)
Q Consensus 401 G~iv~~G~~~~~~~~f 416 (1441)
|++-.+|+++|++...
T Consensus 547 G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 547 GRIAAFGPREEVLAKV 562 (580)
T ss_pred ChHHhcCCHHHHHHHh
Confidence 9999999999998753
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=320.22 Aligned_cols=214 Identities=20% Similarity=0.242 Sum_probs=172.8
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCC--c-eEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g 919 (1441)
.+.++|++++++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|.... . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478889887763 24699999999999999999999999999999999996431 1 2479999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 990 (1441)
.++.. ...++.++|++|++.+++ .|+.||+.+....+. .. ...++.++++++.+++.+ ..+..
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 148 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQS--- 148 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcCC---
Confidence 87531 234567999999988877 599999987654321 11 123345667788888743 22332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 991 ~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.||++++|+
T Consensus 149 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~ 224 (264)
T PRK14243 149 --GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFN 224 (264)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 346999999999999999999999999999999999999999999999975 589999999986 5888999999997
Q ss_pred c--------CcEEEEEcCC
Q 000529 1071 R--------GGREVYVGPL 1081 (1441)
Q Consensus 1071 ~--------gG~~v~~G~~ 1081 (1441)
+ .|++++.|+.
T Consensus 225 ~~~~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 225 VELTEGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccccccCceEEEeCCH
Confidence 2 4899999875
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=323.50 Aligned_cols=211 Identities=20% Similarity=0.291 Sum_probs=173.0
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.+.++|+++.++. +...+|+|||++|++||+++|+|+||||||||+++|+|... .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 3678999887642 22358999999999999999999999999999999999864 369999999876
Q ss_pred Cc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccC------CCC
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGL------PGV 993 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~------~~~ 993 (1441)
.. ...++.++|++|++.+++ .|++||+.... ... ++.++++++.+||.+..+...+. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 234667999999999887 49999995321 111 23467788899998766654331 123
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCc
Q 000529 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1441)
Q Consensus 994 ~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG 1073 (1441)
..||||||||++|||||+.+|+||+|||||+|||+.+...+++.|+++. .++|||+++|+++ .+ ..+|++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-C
Confidence 5699999999999999999999999999999999999999999999875 4899999999985 34 46999999975 8
Q ss_pred EEEEEcCCC
Q 000529 1074 REVYVGPLG 1082 (1441)
Q Consensus 1074 ~~v~~G~~~ 1082 (1441)
++++.|++.
T Consensus 213 ~i~~~g~~~ 221 (275)
T cd03289 213 KVRQYDSIQ 221 (275)
T ss_pred eEeecCCHH
Confidence 999999873
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=307.31 Aligned_cols=179 Identities=26% Similarity=0.331 Sum_probs=150.5
Q ss_pred ceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc-----cccceEEEEeccCCC-CC
Q 000529 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-----ETFARISGYCEQNDI-HS 941 (1441)
Q Consensus 868 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~-~~ 941 (1441)
++.+|+|||++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++. ..
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 34699999999999999999999999999999999998653 47999999987531 123567999999973 23
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeC
Q 000529 942 PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021 (1441)
Q Consensus 942 ~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDE 1021 (1441)
...|++||+.+..... ..+.++..+.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3479999998865432 1233444556889999999988777764 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 000529 1022 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1056 (1441)
Q Consensus 1022 PTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 1056 (1441)
||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=348.25 Aligned_cols=104 Identities=25% Similarity=0.328 Sum_probs=90.1
Q ss_pred HHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhh---CCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 000529 971 IEEVMELVELKPL-RQSLVGLPGVNGLSTEQRKRLTIAVELVA---NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046 (1441)
Q Consensus 971 v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRv~iA~aL~~---~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~ 1046 (1441)
..++++.+||... .++. ...|||||+||+.||++|+. +|++++|||||+|||+.....+++.|+++.++|.
T Consensus 808 ~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~ 882 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGN 882 (924)
T ss_pred HHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 3567888898753 3444 34699999999999999997 5999999999999999999999999999988899
Q ss_pred EEEEEecCCcHHHHHhhCeEEEEe-----cCcEEEEEcCC
Q 000529 1047 TVVCTIHQPSIDIFEAFDELFLMK-----RGGREVYVGPL 1081 (1441)
Q Consensus 1047 tvi~~~H~~~~~i~~~~D~vllL~-----~gG~~v~~G~~ 1081 (1441)
|||+++|++. ..+.+|+++.|. +||++++.|+.
T Consensus 883 TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 883 TVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 9999999985 346799999994 57999999986
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=316.80 Aligned_cols=216 Identities=23% Similarity=0.296 Sum_probs=174.4
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCC--ce--EEEEEEEc
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GY--ITGDIRIS 918 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~~--~~G~i~i~ 918 (1441)
.+.++++++++ +++.+|+||||++.+||+++|+|+||||||||+++|+|...+ |. +.|++.++
T Consensus 10 ~i~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYI-------------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEec-------------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 37788888765 245699999999999999999999999999999999997542 21 23666666
Q ss_pred CccCCc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000529 919 GYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGLP 991 (1441)
Q Consensus 919 g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 991 (1441)
|.+... ...++.++|++|++.+++.+|++||+.+...... ....++.++.++++++.+++.+ ..+..
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 665432 2345679999999999999999999988753321 1123344456889999999964 23333
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEec
Q 000529 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1441)
Q Consensus 992 ~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~ 1071 (1441)
+..||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.||++++|++
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~ 227 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN 227 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 346999999999999999999999999999999999999999999999864 699999999986 46688999999984
Q ss_pred CcEEEEEcCC
Q 000529 1072 GGREVYVGPL 1081 (1441)
Q Consensus 1072 gG~~v~~G~~ 1081 (1441)
|+++..|+.
T Consensus 228 -g~i~~~g~~ 236 (257)
T PRK14246 228 -GELVEWGSS 236 (257)
T ss_pred -CEEEEECCH
Confidence 899999875
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=300.99 Aligned_cols=168 Identities=28% Similarity=0.427 Sum_probs=147.5
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
.++|+++.++ ...+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEccc
Confidence 4677776542 23699999999999999999999999999999999998653 47999999987643
Q ss_pred --cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000529 925 --ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1441)
Q Consensus 925 --~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1002 (1441)
...++.++|++|++.+++..|+.|++. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567999999998888899999872 8999999
Q ss_pred HHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 1003 Rv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|+++ .+.+.+|++++|++|
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999877899999999986 567789999999863
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=295.64 Aligned_cols=207 Identities=25% Similarity=0.380 Sum_probs=179.3
Q ss_pred CceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc---cccceEEEEeccCCCCCCC
Q 000529 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDIHSPF 943 (1441)
Q Consensus 867 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ 943 (1441)
+.+.+|+|+|..|++|.+++|+|||||||||||.++++..+ ..+|+|.++|.++.. ...++.++..-|+......
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~r 89 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSR 89 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhe
Confidence 56789999999999999999999999999999999998765 358999999998754 3466778888998888888
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCC
Q 000529 944 VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1023 (1441)
Q Consensus 944 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPT 1023 (1441)
+||+|-+.|+..-. ......++.+..++++++.++|.++.|+... +||||||||.-||+.|+.+.+.++||||.
T Consensus 90 lTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryLd-----~LSGGQrQRAfIAMVlaQdTdyvlLDEPL 163 (252)
T COG4604 90 LTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYLD-----ELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163 (252)
T ss_pred eEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhHH-----hcccchhhhhhhheeeeccCcEEEecCcc
Confidence 99999999973211 1223345566789999999999999998854 69999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCCC
Q 000529 1024 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1441)
Q Consensus 1024 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~~ 1083 (1441)
++||...+..+|+.||+++++ |+|||++.||.+. ...+.|+++-|++ |+++..|++.+
T Consensus 164 NNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~e 222 (252)
T COG4604 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPDE 222 (252)
T ss_pred cccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHHH
Confidence 999999999999999999976 9999999999874 4557899999985 89999999854
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=317.09 Aligned_cols=219 Identities=21% Similarity=0.264 Sum_probs=174.9
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCC--C-ceEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 919 (1441)
.+.++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 367888887652 3469999999999999999999999999999999999643 1 12579999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 994 (1441)
.++.. ...++.++|++|++.+++. |+.||+.+...... ....+..++++.++++.+++.+........ ...
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDK-SAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhC-Ccc
Confidence 87642 1235679999999888874 99999987643221 112233456688899999885422111111 245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 995 ~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
.||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++. ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 6999999999999999999999999999999999999999999999964 899999999986 57888999999975 89
Q ss_pred EEEEcCC
Q 000529 1075 EVYVGPL 1081 (1441)
Q Consensus 1075 ~v~~G~~ 1081 (1441)
+++.|+.
T Consensus 223 i~~~g~~ 229 (250)
T PRK14266 223 IIESGLT 229 (250)
T ss_pred EEEeCCH
Confidence 9999875
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=317.37 Aligned_cols=203 Identities=23% Similarity=0.278 Sum_probs=168.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC----CCCcceEEEECCeeCCCCCc-cceEEEEcCCCC--CC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP----SLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDN--HI 238 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~----~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~--~~ 238 (1441)
++|+|+|+++++||+++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++||+|++. +.
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~---~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~ 93 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT---AGRVLLDGKPVAPCALRGRKIATIMQNPRSAFN 93 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCc---CCEEEECCeeccccccccceEEEEecCCccccC
Confidence 589999999999999999999999999999999999988 5 9999999998754322 257999999974 44
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc---ccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI---CADTM 315 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~dt~ 315 (1441)
+..|+.+++.+.++..+.. . ....++.+++.+||.+ ..++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~----------~--------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 137 (254)
T PRK10418 94 PLHTMHTHARETCLALGKP----------A--------------------------DDATLTAALEAVGLENAARVLKLY 137 (254)
T ss_pred ccccHHHHHHHHHHHcCCC----------h--------------------------HHHHHHHHHHHcCCCChhhhhhcC
Confidence 5679999987654322110 0 0123567889999976 34666
Q ss_pred cccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
+++ |||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++++ ..+++|++++|+.+++.+++|++
T Consensus 138 ~~~-----LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~-~~g~til~~sH~~~~~~~~~d~v 211 (254)
T PRK10418 138 PFE-----MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQ-KRALGMLLVTHDMGVVARLADDV 211 (254)
T ss_pred Ccc-----cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-hcCcEEEEEecCHHHHHHhCCEE
Confidence 554 999999999999999999999999999999999999999999998754 33567777889999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 000529 396 ILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1441)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 212 AVMSHGRIVEQGDVETLF 229 (254)
T ss_pred EEEECCEEEEecCHHHHh
Confidence 999999999999988764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=317.75 Aligned_cols=204 Identities=20% Similarity=0.273 Sum_probs=164.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCcceEEEECCeeCCCCC-----ccceEEEEcCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PSLKVSGRVTYNGHNMDEFV-----PERTAAYISQH 234 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~-----~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~ 234 (1441)
.++|+|+|+++++||+++|+|||||||||||++|+|.++ |+ +|+|.++|+++.... .++.++|++|+
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 110 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS---EGEILYEGLNILDSNINVVNLRREIGMVFQK 110 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC---ceEEEECCEEcccccccHHHHhccEEEEecC
Confidence 358999999999999999999999999999999999864 45 899999999875321 23579999999
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc----c
Q 000529 235 DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----I 310 (1441)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~ 310 (1441)
+.+++. ||+||+.++....+... ....+..++..++.+++. +
T Consensus 111 ~~~~~~-tv~enl~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~ 156 (268)
T PRK14248 111 PNPFPK-SIYNNITHALKYAGERR---------------------------------KSVLDEIVEESLTKAALWDEVKD 156 (268)
T ss_pred CccCcc-cHHHHHHHHHHhcCCCc---------------------------------HHHHHHHHHHHHHHcCCCcchHH
Confidence 887774 99999998643221000 000112244567777774 2
Q ss_pred ccccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHh
Q 000529 311 CADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYN 390 (1441)
Q Consensus 311 ~~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~ 390 (1441)
..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.. + ++|+.++|+.+++.+
T Consensus 157 ~~~~~~~~-----LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~ 228 (268)
T PRK14248 157 RLHSSALS-----LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--E-YSIIIVTHNMQQALR 228 (268)
T ss_pred HHhcCccc-----CCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEEeCHHHHHH
Confidence 34455544 999999999999999999999999999999999999999999998742 3 567778888999999
Q ss_pred hcCeEEEecCCeEEEEcCHHHHH
Q 000529 391 LFDDIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 391 l~D~vilL~~G~iv~~G~~~~~~ 413 (1441)
++|+|++|++|++++.|+.+++.
T Consensus 229 ~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 229 VSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999988764
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=315.33 Aligned_cols=209 Identities=27% Similarity=0.395 Sum_probs=166.9
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|+++.+.. .++.+|+|+|+++++|++++|+||||||||||+++|+|...+ ..|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEhH
Confidence 567787765421 124699999999999999999999999999999999998653 4799999998753
Q ss_pred c---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccccc------CCCCC
Q 000529 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG------LPGVN 994 (1441)
Q Consensus 924 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg------~~~~~ 994 (1441)
. ...++.++|++|++.+++ .|+.|++.+... ... ++.+.++++.+++.+..+.... .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 223457999999988776 699999876421 111 2235678888888776665431 01235
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 995 ~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
.||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ +|||++||++. . .+.+|++++|++ |+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~-~~~~d~v~~l~~-g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-L-LDLVDRIIVMDS-GR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-H-HHhCCEEEEEeC-Ce
Confidence 79999999999999999999999999999999999999999999998764 89999999986 3 478999999985 78
Q ss_pred EEEEc
Q 000529 1075 EVYVG 1079 (1441)
Q Consensus 1075 ~v~~G 1079 (1441)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 87654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=316.04 Aligned_cols=194 Identities=19% Similarity=0.274 Sum_probs=164.6
Q ss_pred CceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCccccceEEEEeccCCCCCCCCCH
Q 000529 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTV 946 (1441)
Q Consensus 867 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 946 (1441)
..+.+|+|+|++|++||+++|+||||||||||+++|+|..++ ..|+|.++|. ++++.|+....+.+|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G~I~~~g~----------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVGKVDRNGE----------VSVIAISAGLSGQLTG 102 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCE----------EeEEecccCCCCCCcH
Confidence 456799999999999999999999999999999999998653 4799999884 3566777767778999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCC
Q 000529 947 YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026 (1441)
Q Consensus 947 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgL 1026 (1441)
.||+.+..... ....+...+.++++++.+++.+..+..+ ..||||||||++||+||+.+|++|+|||||+||
T Consensus 103 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 103 IENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----KKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 99998764432 1233444556778899999988777654 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCC
Q 000529 1027 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1027 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1082 (1441)
|+.+...+++.|+++.+.|+|||+++|++. .+.+.+|++++|++ |++++.|+..
T Consensus 175 D~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~ 228 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GKLKDYGELD 228 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999877999999999976 46778999999984 8999998863
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=309.97 Aligned_cols=197 Identities=28% Similarity=0.374 Sum_probs=163.7
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
++++|++..++ ++.+|+|+|++|++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 56788876652 3469999999999999999999999999999999999865 34799999998753
Q ss_pred ccccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000529 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003 (1441)
Q Consensus 924 ~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1003 (1441)
....++.++|++|++.+++..|+.||+.+....+. .. ++.++++++.+||.+..+..+ +.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22245678999999888888999999987553321 11 234788999999987666654 3699999999
Q ss_pred HHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEe
Q 000529 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 1004 v~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~ 1070 (1441)
++||++|+.+|++|+|||||+|||+.+...+++.|++++++|+|||++||++. ++. . |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~-~-~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLP-G-ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhc-c-CcEEeec
Confidence 99999999999999999999999999999999999998878999999999985 343 3 8887774
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=357.82 Aligned_cols=199 Identities=23% Similarity=0.286 Sum_probs=164.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1441)
++|+|+|++++|||.++|+|+||||||||+++|+|+++|+ +|+|.+||+++++..+ ++.++||+|++.+|+ .|
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~-~T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA-DT 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCcccc-ch
Confidence 5999999999999999999999999999999999999998 9999999999987654 478999999987776 59
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcC-------Cccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLG-------LDICADTM 315 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt~ 315 (1441)
++|||.++.. . ..+. ++.+++..| |++..||.
T Consensus 431 i~~NI~~~~~---~--~d~~------------------------------------i~~a~~~~gl~~~i~~lp~Gldt~ 469 (592)
T PRK10790 431 FLANVTLGRD---I--SEEQ------------------------------------VWQALETVQLAELARSLPDGLYTP 469 (592)
T ss_pred HHHHHHhCCC---C--CHHH------------------------------------HHHHHHHcCcHHHHHhcccccccc
Confidence 9999998631 1 0000 112222222 56677899
Q ss_pred cccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
+|+ .+..||||||||++|||||+++|++++||||||+||+.+...|.+.|++.. .++|+|+ ++|.. +....+|+|
T Consensus 470 i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tvIi-vtHr~-~~l~~~D~i 544 (592)
T PRK10790 470 LGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTLVV-IAHRL-STIVEADTI 544 (592)
T ss_pred ccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEEEE-Eecch-HHHHhCCEE
Confidence 987 456699999999999999999999999999999999999999999998753 3445554 55554 556679999
Q ss_pred EEecCCeEEEEcCHHHHHH
Q 000529 396 ILLSDGQIVYQGPRELVLE 414 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1441)
++|++|+++..|+++++.+
T Consensus 545 i~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 545 LVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred EEEECCEEEEEcCHHHHHh
Confidence 9999999999999999864
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=315.67 Aligned_cols=207 Identities=21% Similarity=0.325 Sum_probs=166.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcceEEEECCeeCCCC-----CccceEEEEcCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1441)
+++|+|+|++|++||+++|+||||||||||+++|+|.++ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTP 96 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCcc
Confidence 358999999999999999999999999999999999986 2111389999999987431 124569999999877
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc----cccc
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----ICAD 313 (1441)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 313 (1441)
++ .||+||+.++....+.... +.....++.+++.+||. ...+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14251 97 FP-FSVYDNVAYGLKIAGVKDK---------------------------------ELIDQRVEESLKQAAIWKETKDNLD 142 (251)
T ss_pred CC-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCCcchHHHhc
Confidence 75 7999999886543221000 00112345677888884 2334
Q ss_pred cccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcC
Q 000529 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1441)
Q Consensus 314 t~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D 393 (1441)
..+ +.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. . +++|+.++|+.+++.+++|
T Consensus 143 ~~~-----~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~-~~tiiiisH~~~~~~~~~d 214 (251)
T PRK14251 143 RNA-----QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK--H-QYTFIMVTHNLQQAGRISD 214 (251)
T ss_pred cCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH--c-CCeEEEEECCHHHHHhhcC
Confidence 444 4499999999999999999999999999999999999999999999863 2 3677778999999999999
Q ss_pred eEEEecCCeEEEEcCHHHHH
Q 000529 394 DIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1441)
+|++|++|+++..|+.+++.
T Consensus 215 ~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 215 QTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=356.72 Aligned_cols=212 Identities=26% Similarity=0.402 Sum_probs=175.9
Q ss_pred ceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCcc
Q 000529 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1441)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 921 (1441)
..++++|++|+++. +++.+|+|+|++++|||.+||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p--~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEe
Confidence 36899999998742 234699999999999999999999999999999999998663 47999999998
Q ss_pred CCc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000529 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-------RQSLVGLP 991 (1441)
Q Consensus 922 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 991 (1441)
.++ ..+++.++||+|++.+++ .|++||+.++. + +.+ ++.+.++++..++.+. .|+.+|..
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN----P-GAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC----C-CCC----HHHHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 754 356778999999988876 69999997631 1 222 2335566666666543 35666654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEec
Q 000529 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1441)
Q Consensus 992 ~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~ 1071 (1441)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|++||+++ ..+.+|++++|++
T Consensus 591 -g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~ 666 (694)
T TIGR01846 591 -GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEK 666 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeC
Confidence 35799999999999999999999999999999999999999999999985 5899999999986 4567999999985
Q ss_pred CcEEEEEcCC
Q 000529 1072 GGREVYVGPL 1081 (1441)
Q Consensus 1072 gG~~v~~G~~ 1081 (1441)
|++++.|+.
T Consensus 667 -G~i~~~g~~ 675 (694)
T TIGR01846 667 -GQIAESGRH 675 (694)
T ss_pred -CEEEEeCCH
Confidence 899999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=361.16 Aligned_cols=211 Identities=30% Similarity=0.454 Sum_probs=176.7
Q ss_pred ceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCcc
Q 000529 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1441)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 921 (1441)
..++|+|++|.++. ++++|+|+|++++|||.+||+||||||||||++.|.|..++ .+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEe
Confidence 45999999998752 35799999999999999999999999999999999998763 58999999988
Q ss_pred CCc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------cccccccccCC
Q 000529 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL-------KPLRQSLVGLP 991 (1441)
Q Consensus 922 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~vg~~ 991 (1441)
++. ..+++.++||+|++.++. -|++||+.++. .+.+.++ ++++++..++ .+-.|+.+|..
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~ee----i~~a~k~a~~~d~I~~lp~g~dt~vge~ 462 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATDEE----IEEALKLANAHEFIANLPDGYDTIVGER 462 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhChHHHHHhCcccccceecCC
Confidence 754 456888999999999987 89999998763 1233333 4444444433 33468888854
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEec
Q 000529 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1441)
Q Consensus 992 ~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~ 1071 (1441)
...||||||||++|||||+++|+||+||||||+||+++...|++.++++. +|+|+++++|+++ ....+|+|++|++
T Consensus 463 -G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~ 538 (567)
T COG1132 463 -GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN 538 (567)
T ss_pred -CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC
Confidence 34699999999999999999999999999999999999999999999887 5789999999986 3455999999985
Q ss_pred CcEEEEEcCC
Q 000529 1072 GGREVYVGPL 1081 (1441)
Q Consensus 1072 gG~~v~~G~~ 1081 (1441)
|++++.|+.
T Consensus 539 -G~i~e~G~h 547 (567)
T COG1132 539 -GRIVERGTH 547 (567)
T ss_pred -CEEEEecCH
Confidence 899999986
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=286.10 Aligned_cols=206 Identities=23% Similarity=0.331 Sum_probs=174.4
Q ss_pred CCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc----------------cccce
Q 000529 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ----------------ETFAR 929 (1441)
Q Consensus 866 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------------~~~~~ 929 (1441)
++...+|++||++.+.|+++.|+|.|||||||+|+||.=..++ ..|.|.+||..+.- ...+.
T Consensus 16 ~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P--~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs 93 (256)
T COG4598 16 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRT 93 (256)
T ss_pred cccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCC--CCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHH
Confidence 4567899999999999999999999999999999999977663 47999999975310 11234
Q ss_pred EEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHH
Q 000529 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVE 1009 (1441)
Q Consensus 930 ~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~a 1009 (1441)
..|+|+|+..+++.+||.||+.=+- .+. ...++.+..++.+..|+.+|+.+.+|.+. ..|||||+||++||||
T Consensus 94 ~L~mVFQ~FNLWsHmtvLeNViEaP-vhV-Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----~~LSGGQQQR~aIARa 166 (256)
T COG4598 94 RLGMVFQHFNLWSHMTVLENVIEAP-VHV-LGVSKAEAIERAEKYLAKVGIAEKADAYP-----AHLSGGQQQRVAIARA 166 (256)
T ss_pred HhhHhhhhcchhHHHHHHHHHHhcc-hHh-hcCCHHHHHHHHHHHHHHhCchhhhhcCc-----cccCchHHHHHHHHHH
Confidence 5799999999999999999985321 111 13456666777889999999999888764 3599999999999999
Q ss_pred HhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCCC
Q 000529 1010 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1010 L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1082 (1441)
|+.+|+++++|||||.|||+-.-++.+.+++++++|+|.+++||.+.. .-+...+++.|.+ |.+-..||+.
T Consensus 167 LameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~-G~iEE~G~P~ 237 (256)
T COG4598 167 LAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ-GKIEEEGPPE 237 (256)
T ss_pred HhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec-ceecccCChH
Confidence 999999999999999999999999999999999999999999999864 5567799999985 8999999983
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=315.50 Aligned_cols=219 Identities=26% Similarity=0.294 Sum_probs=169.9
Q ss_pred eeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCC
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 923 (1441)
+.++|+++.++ ++.+|+|+|++|++|++++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 46778877653 24699999999999999999999999999999999997421135799999998764
Q ss_pred cc---c-cceEEEEeccCCCCCCCCCHHHHHHHHHH-hcC--CC-CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000529 924 QE---T-FARISGYCEQNDIHSPFVTVYESLFYSAW-LRL--PP-EVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVN 994 (1441)
Q Consensus 924 ~~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~-lr~--~~-~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 994 (1441)
.. . .++.++|++|++.+++.+|+.+++.+... ++. .. ........+.+++.++.+++. +..+..+. +
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----V 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----C
Confidence 31 1 22468999999888887887776543211 110 00 011222345678889999985 34444431 2
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHh-hCeEEEEecCc
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 1073 (1441)
Q Consensus 995 ~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~-~D~vllL~~gG 1073 (1441)
.||||||||++|||||+.+|+||+|||||+|||+.++..+.+.|+++++.|+|||++||++. .+... +|++++|+ +|
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~-~g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLY-QG 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEE-CC
Confidence 59999999999999999999999999999999999999999999999877899999999976 34444 79999997 48
Q ss_pred EEEEEcCC
Q 000529 1074 REVYVGPL 1081 (1441)
Q Consensus 1074 ~~v~~G~~ 1081 (1441)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (248)
T PRK09580 223 RIVKSGDF 230 (248)
T ss_pred eEEEeCCH
Confidence 99999875
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=316.85 Aligned_cols=215 Identities=21% Similarity=0.239 Sum_probs=174.1
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCC--c-eEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g 919 (1441)
.+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+ + +.+|+|.++|
T Consensus 16 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g 82 (265)
T PRK14252 16 KSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHP 82 (265)
T ss_pred eEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcC
Confidence 588999987763 24699999999999999999999999999999999997642 1 2589999998
Q ss_pred ccCC---c----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccc
Q 000529 920 YPKK---Q----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLV 988 (1441)
Q Consensus 920 ~~~~---~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~v 988 (1441)
.+.. . ...++.++|++|++.+++. |++||+.+....... ......++.++++++.+++.+ ..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~- 158 (265)
T PRK14252 83 DNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV--KRRSILEERVENALRNAALWDEVKDRLGDL- 158 (265)
T ss_pred ccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCC--ChHHHHHHHHHHHHHHcCCchhhhHHHhCC-
Confidence 7642 1 1245679999999988885 999999876533211 111223455778888888742 23333
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEE
Q 000529 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1068 (1441)
Q Consensus 989 g~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vll 1068 (1441)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 159 ----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~ 232 (265)
T PRK14252 159 ----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAY 232 (265)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEE
Confidence 346999999999999999999999999999999999999999999999975 699999999986 57788999999
Q ss_pred EecCcEEEEEcCC
Q 000529 1069 MKRGGREVYVGPL 1081 (1441)
Q Consensus 1069 L~~gG~~v~~G~~ 1081 (1441)
|++ |+++..|+.
T Consensus 233 l~~-G~i~~~g~~ 244 (265)
T PRK14252 233 MYM-GELIEFGAT 244 (265)
T ss_pred EEC-CEEEEeCCH
Confidence 974 899999875
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=353.54 Aligned_cols=210 Identities=27% Similarity=0.415 Sum_probs=173.6
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++|+||+|+++.. +++++|+|+|++|+|||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 478 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i 545 (711)
T TIGR00958 478 LIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVPL 545 (711)
T ss_pred eEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEH
Confidence 58999999988531 134699999999999999999999999999999999998763 479999999987
Q ss_pred Cc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-------RQSLVGLPG 992 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 992 (1441)
++ ..+++.++||+|++.+++ .|++||+.++. + +.+ ++.++++++..++.+. .|+.+|..+
T Consensus 546 ~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 615 (711)
T TIGR00958 546 VQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL----T-DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG 615 (711)
T ss_pred HhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC----C-CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCC
Confidence 54 346778999999998876 69999998752 1 222 2346677888777654 355666543
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 993 ~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
.+||||||||++|||||+++|+||+||||||+||+++++.+++ .. ..+++|+|+++|+++ ..+.+|+|++|++
T Consensus 616 -~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~- 688 (711)
T TIGR00958 616 -SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKK- 688 (711)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEEC-
Confidence 5699999999999999999999999999999999999999998 22 235899999999985 5678999999985
Q ss_pred cEEEEEcCC
Q 000529 1073 GREVYVGPL 1081 (1441)
Q Consensus 1073 G~~v~~G~~ 1081 (1441)
|+++..|+.
T Consensus 689 G~ive~Gt~ 697 (711)
T TIGR00958 689 GSVVEMGTH 697 (711)
T ss_pred CEEEEeeCH
Confidence 899999985
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=358.40 Aligned_cols=210 Identities=23% Similarity=0.368 Sum_probs=177.7
Q ss_pred ceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCcc
Q 000529 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1441)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 921 (1441)
..++++|++|.++. ++++|+|+|++++|||.+||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEE
Confidence 36899999998741 23599999999999999999999999999999999998764 47999999998
Q ss_pred CCc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000529 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLP 991 (1441)
Q Consensus 922 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 991 (1441)
.++ ..+++.++||+|++.+++. |++||+.++. +.+ ++.++++++.+|+.+.. |+.+|..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 653 3567889999999999875 9999998752 122 23467788888876533 5556653
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEec
Q 000529 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1441)
Q Consensus 992 ~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~ 1071 (1441)
+ ..||||||||++|||||+++|+||+||||||+||+++++.|.+.|+++.+ ++|+|+++|+++ ....+|++++|++
T Consensus 474 g-~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~ 549 (592)
T PRK10790 474 G-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHR 549 (592)
T ss_pred C-CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEEC
Confidence 3 46999999999999999999999999999999999999999999999864 699999999985 5677999999985
Q ss_pred CcEEEEEcCC
Q 000529 1072 GGREVYVGPL 1081 (1441)
Q Consensus 1072 gG~~v~~G~~ 1081 (1441)
|+++..|+.
T Consensus 550 -G~i~~~G~~ 558 (592)
T PRK10790 550 -GQAVEQGTH 558 (592)
T ss_pred -CEEEEEcCH
Confidence 899999985
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=297.54 Aligned_cols=209 Identities=23% Similarity=0.355 Sum_probs=188.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCccceEEEEcCCCCCCCCCC
Q 000529 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1441)
.++++++|+|+.++||+|++++|||||||||.+++|.|+++|+ +|+|+++|.+++... +.+|||.|.+--+++.+|
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~t 88 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEERGLYPKMT 88 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhhccCccCc
Confidence 5678999999999999999999999999999999999999998 999999999987532 457999999999999999
Q ss_pred HHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccccccc
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1441)
|.|.|.|-++++|+.. ++.....+++|+++++.......|-+
T Consensus 89 v~dql~yla~LkGm~~----------------------------------~e~~~~~~~wLer~~i~~~~~~kIk~---- 130 (300)
T COG4152 89 VEDQLKYLAELKGMPK----------------------------------AEIQKKLQAWLERLEIVGKKTKKIKE---- 130 (300)
T ss_pred HHHHHHHHHHhcCCcH----------------------------------HHHHHHHHHHHHhccccccccchHHH----
Confidence 9999999999998631 23345578899999999888887766
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 GLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G~ 402 (1441)
||-|.+|++.+-.+++..|++++||||+|||||.++..+-+.+.++. ..+++|+..+|.++.+.++||++++|++|+
T Consensus 131 -LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk--~~GatIifSsH~Me~vEeLCD~llmL~kG~ 207 (300)
T COG4152 131 -LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELK--EEGATIIFSSHRMEHVEELCDRLLMLKKGQ 207 (300)
T ss_pred -hhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHH--hcCCEEEEecchHHHHHHHhhhhheecCCc
Confidence 99999999999999999999999999999999999999989888874 457778888999999999999999999999
Q ss_pred EEEEcCHHHHHHHH
Q 000529 403 IVYQGPRELVLEFF 416 (1441)
Q Consensus 403 iv~~G~~~~~~~~f 416 (1441)
.|.+|+.+++...|
T Consensus 208 ~V~~G~v~~ir~~~ 221 (300)
T COG4152 208 TVLYGTVEDIRRSF 221 (300)
T ss_pred eEEeccHHHHHHhc
Confidence 99999999998754
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=316.06 Aligned_cols=201 Identities=27% Similarity=0.385 Sum_probs=169.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCCCH
Q 000529 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMTV 243 (1441)
Q Consensus 167 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 243 (1441)
+|+|+|+++++|++++|+||||||||||+++|+|.++ . +|+|.++|+++..... ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999999999999999999999999999974 3 8999999998765432 2468999999888888999
Q ss_pred HHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccccC
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1441)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 323 (1441)
+||+.+..... . . ..+....++++++.+||.+..++.+++
T Consensus 87 ~~nl~~~~~~~-~-~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 126 (248)
T PRK03695 87 FQYLTLHQPDK-T-R---------------------------------TEAVASALNEVAEALGLDDKLGRSVNQ----- 126 (248)
T ss_pred HHHHHhcCccC-C-C---------------------------------cHHHHHHHHHHHHHcCCHhHhcCCccc-----
Confidence 99998753210 0 0 000123456789999998888877765
Q ss_pred CChhhhhHHHHHHHHhc-------CCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEE
Q 000529 324 VSGGQKKRVTTGEMMVG-------PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1441)
Q Consensus 324 LSGGqrkRvsia~al~~-------~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vi 396 (1441)
||||||||++||+||+. +|++++|||||+|||+.++..+.+.|+++.. .+++|+.++|+.+++.+++|+++
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~--~~~tvi~~sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ--QGIAVVMSSHDLNHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999997 6799999999999999999999999998753 35677778999999999999999
Q ss_pred EecCCeEEEEcCHHHHH
Q 000529 397 LLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1441)
+|++|++++.|+.+++.
T Consensus 205 ~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 205 LLKQGKLLASGRRDEVL 221 (248)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999987663
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=324.18 Aligned_cols=204 Identities=20% Similarity=0.339 Sum_probs=165.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--C---CCCcceEEEECCeeCCCC-----CccceEEEEcCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--P---SLKVSGRVTYNGHNMDEF-----VPERTAAYISQH 234 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~--~---~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~ 234 (1441)
..+|+|+|++|++||+++|+|||||||||||++|+|..+ | + +|+|.++|.++... ..++.++|++|+
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~ 128 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHT---TGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCC---ceEEEECCEEhhhcccchHHhhhcEEEECCC
Confidence 359999999999999999999999999999999999854 3 5 99999999987532 124579999999
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc----c
Q 000529 235 DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----I 310 (1441)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~ 310 (1441)
+.+++ .||+||+.++....+... .......+..+++.+|+. +
T Consensus 129 ~~l~~-~tv~enl~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~l~~ 174 (286)
T PRK14275 129 PNPFP-KSIFDNIAYGPRLHGIND---------------------------------KKQLEEIVEKSLRKAALWDEVSD 174 (286)
T ss_pred CCCCc-cCHHHHHHhHHHhcCCCc---------------------------------HHHHHHHHHHHHHHhCCccchhh
Confidence 88777 499999998654321100 000112345567777763 3
Q ss_pred ccccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHh
Q 000529 311 CADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYN 390 (1441)
Q Consensus 311 ~~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~ 390 (1441)
..++.++ .|||||||||+||+||+.+|++|+|||||+|||+.+...+.+.|+++.. +.+|++++|+.+++.+
T Consensus 175 ~~~~~~~-----~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~---~~tvIivsH~~~~~~~ 246 (286)
T PRK14275 175 RLDKNAL-----GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG---SYTIMIVTHNMQQASR 246 (286)
T ss_pred HhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHH
Confidence 4455554 4999999999999999999999999999999999999999999998642 3667778999999999
Q ss_pred hcCeEEEecCCeEEEEcCHHHHH
Q 000529 391 LFDDIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 391 l~D~vilL~~G~iv~~G~~~~~~ 413 (1441)
++|++++|++|+++..|+.+++.
T Consensus 247 ~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 247 VSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999988764
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=306.44 Aligned_cols=184 Identities=25% Similarity=0.324 Sum_probs=154.5
Q ss_pred ceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc--cccceEEEEeccCCCCCCCCC
Q 000529 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ--ETFARISGYCEQNDIHSPFVT 945 (1441)
Q Consensus 868 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 945 (1441)
++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccchHHhhhheEEeccCcccccCCc
Confidence 35699999999999999999999999999999999997653 47999999987532 224467899999988888899
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCC
Q 000529 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025 (1441)
Q Consensus 946 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsg 1025 (1441)
+.|++.+....+. . + ++.++++++.+++.+..++.++ .||||||||++||+||+.+|++|+|||||+|
T Consensus 90 v~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~ 157 (198)
T TIGR01189 90 ALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPAA-----QLSAGQQRRLALARLWLSRAPLWILDEPTTA 157 (198)
T ss_pred HHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999987644321 1 1 2357889999999887776643 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEE
Q 000529 1026 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1068 (1441)
Q Consensus 1026 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vll 1068 (1441)
||+.++..+++.|++++++|.|||+++|++.. + .+++++.
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~--~~~~~~~ 197 (198)
T TIGR01189 158 LDKAGVALLAGLLRAHLARGGIVLLTTHQDLG-L--VEARELR 197 (198)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEEccccc-c--cceEEee
Confidence 99999999999999998789999999999752 2 3466553
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=319.17 Aligned_cols=209 Identities=26% Similarity=0.332 Sum_probs=163.4
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
+++|+++.++. .++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhhh
Confidence 46677765531 113589999999999999999999999999999999998653 47999999986532
Q ss_pred ---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCcccccccccCCCCC
Q 000529 925 ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRK-----MFIEEVMELV--ELKPLRQSLVGLPGVN 994 (1441)
Q Consensus 925 ---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~vg~~~~~ 994 (1441)
...++.++|++|++.+++ .|++||+.+.... ....... ..+++.++.+ ++.+..+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~ 137 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GV 137 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CC
Confidence 234567999999988776 6999999765321 1111111 1234445554 455444443 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcE
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 995 ~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~ 1074 (1441)
.||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||++||++. ++ +.+|++++|++ |+
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~v~~l~~-G~ 213 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TI-ENADRIVVLED-GK 213 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HH-hhCCEEEEecC-Ce
Confidence 6999999999999999999999999999999999999999999999964 899999999986 35 45999999985 78
Q ss_pred EEEEcCC
Q 000529 1075 EVYVGPL 1081 (1441)
Q Consensus 1075 ~v~~G~~ 1081 (1441)
+++.|+.
T Consensus 214 i~~~~~~ 220 (234)
T cd03251 214 IVERGTH 220 (234)
T ss_pred EeeeCCH
Confidence 9888875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=316.16 Aligned_cols=206 Identities=21% Similarity=0.269 Sum_probs=166.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcceEEEECCeeCCCC--C---ccceEEEEcCCCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL--KVSGRVTYNGHNMDEF--V---PERTAAYISQHDNHI 238 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~~~ 238 (1441)
++|+|+|+++++||+++|+|+||||||||+++|+|.++++. ..+|+|.++|+++... . .++.++|++|++.++
T Consensus 21 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 100 (259)
T PRK14260 21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPF 100 (259)
T ss_pred EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccC
Confidence 58999999999999999999999999999999999987531 1389999999987531 1 135799999998878
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc----ccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----ICADT 314 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1441)
+ +||+||+.++....+.-. ..+....++.+++.+|+. +..++
T Consensus 101 ~-~tv~enl~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (259)
T PRK14260 101 P-MSIYENVAYGVRISAKLP---------------------------------QADLDEIVESALKGAALWQEVKDKLNK 146 (259)
T ss_pred C-ccHHHHHHHHHHHhcCCC---------------------------------HHHHHHHHHHHHHHcCCcchhhhHhcC
Confidence 7 899999988654321000 001112345667778773 34455
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
.++ .|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++. .+ .+|+.++|+.+++.+++|+
T Consensus 147 ~~~-----~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiii~tH~~~~i~~~~d~ 218 (259)
T PRK14260 147 SAL-----GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR--SE-LTIAIVTHNMQQATRVSDF 218 (259)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhcCe
Confidence 544 499999999999999999999999999999999999999999999864 23 6777788999999999999
Q ss_pred EEEec-----CCeEEEEcCHHHHH
Q 000529 395 IILLS-----DGQIVYQGPRELVL 413 (1441)
Q Consensus 395 vilL~-----~G~iv~~G~~~~~~ 413 (1441)
+++|+ +|+++++|+++++.
T Consensus 219 i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 219 TAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred EEEEeccCCCCceEEEeCCHHHHh
Confidence 99997 59999999998874
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=316.39 Aligned_cols=212 Identities=20% Similarity=0.305 Sum_probs=167.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcceEEEECCeeCCCCC-----ccceEEEEcCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTYNGHNMDEFV-----PERTAAYISQHDNH 237 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1441)
+++|+|+|+++++||+++|+||||||||||+++|+|..+ |+...+|+|+++|+++.... .++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 469999999999999999999999999999999999976 21113899999999875321 24579999999877
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccc
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1441)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1441)
++. ||+||+.++....+.... ..+....++.+++.+||.+...+.+.
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKN--------------------------------KKKLDEIVEKSLTSVGLWEELGDRLK 144 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCC--------------------------------HHHHHHHHHHHHHHcCCCchhhhHhh
Confidence 775 999999986433211000 00111235677889998652211111
Q ss_pred cccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000529 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1441)
Q Consensus 318 ~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vil 397 (1441)
...+.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++. . +.+|++++|+.+++.+++|+|++
T Consensus 145 -~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~-~~tiiiisH~~~~~~~~~d~i~~ 220 (251)
T PRK14244 145 -DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--K-NFTIIVVTHSMKQAKKVSDRVAF 220 (251)
T ss_pred -cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEeCCHHHHHhhcCEEEE
Confidence 1234599999999999999999999999999999999999999999999863 3 46777788999999999999999
Q ss_pred ecCCeEEEEcCHHHHH
Q 000529 398 LSDGQIVYQGPRELVL 413 (1441)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1441)
|++|++++.|+++++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 221 FQSGRIVEYNTTQEIF 236 (251)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=359.08 Aligned_cols=212 Identities=24% Similarity=0.332 Sum_probs=177.4
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|++|+++. +++++|+|+|++|++||.+||+|+||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 341 ~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 407 (582)
T PRK11176 341 DIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHDL 407 (582)
T ss_pred eEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEEh
Confidence 6999999998742 234699999999999999999999999999999999998763 479999999986
Q ss_pred Cc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-------RQSLVGLPG 992 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 992 (1441)
++ ..+++.++||+|++.+++ -|++||+.++. +.+.+ ++.++++++.+++.+. .|+.+|..+
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g 478 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGENG 478 (582)
T ss_pred hhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCCC
Confidence 54 346788999999998886 69999997642 11122 2346677777776543 466677644
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 993 ~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
..||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|++||+++ ..+.||+|++|++
T Consensus 479 -~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~- 553 (582)
T PRK11176 479 -VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED- 553 (582)
T ss_pred -CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC-
Confidence 5699999999999999999999999999999999999999999999885 4799999999985 5678999999985
Q ss_pred cEEEEEcCC
Q 000529 1073 GREVYVGPL 1081 (1441)
Q Consensus 1073 G~~v~~G~~ 1081 (1441)
|+++..|+.
T Consensus 554 g~i~e~g~~ 562 (582)
T PRK11176 554 GEIVERGTH 562 (582)
T ss_pred CEEEEeCCH
Confidence 899999985
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=308.72 Aligned_cols=196 Identities=28% Similarity=0.407 Sum_probs=163.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc------cceEEEEcCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDNHI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1441)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++....+ ++.++|++|++.++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 56999999999999999999999999999999999999988 9999999998754322 35799999999888
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
+.+|+.||+.++...... .. ..+....++++++.+||.+..++.+.+
T Consensus 95 ~~~t~~~n~~~~~~~~~~---------~~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 141 (220)
T TIGR02982 95 GFLTARQNVQMALELQPN---------LS------------------------YQEARERARAMLEAVGLGDHLDYYPHN 141 (220)
T ss_pred CCCCHHHHHHHHHHhccC---------CC------------------------HHHHHHHHHHHHHHcCChhhhhcChhh
Confidence 889999999986543210 00 001123467789999998888877755
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. ..+.+++.++|+.+ ..+++|+|++|
T Consensus 142 -----lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sh~~~-~~~~~d~v~~l 214 (220)
T TIGR02982 142 -----LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR-EQGCTILIVTHDNR-ILDVADRIVHM 214 (220)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHH-HHhhCCEEEEE
Confidence 999999999999999999999999999999999999999999998754 23455666777765 56899999999
Q ss_pred cCCeE
Q 000529 399 SDGQI 403 (1441)
Q Consensus 399 ~~G~i 403 (1441)
++|++
T Consensus 215 ~~g~~ 219 (220)
T TIGR02982 215 EDGKL 219 (220)
T ss_pred ECCEE
Confidence 99986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=318.21 Aligned_cols=228 Identities=21% Similarity=0.254 Sum_probs=177.8
Q ss_pred HhcCCCCCcceEEEeeeEEEEEeecccccCCChhhhhhHHHHHHhhhhhcCCCccccceeeeceEEEEeCCeEEEEEcCC
Q 000529 108 ERVGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPP 187 (1441)
Q Consensus 108 ~~~g~~~p~v~v~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~ 187 (1441)
|...++++..-++++|+++.-. .+++|+|+|+++++||+++|+|||
T Consensus 10 ~~~~~~~~~~~l~~~nl~~~~~----------------------------------~~~~l~~vs~~i~~Ge~~~IiG~n 55 (274)
T PRK14265 10 DSATINPDHSVFEVEGVKVFYG----------------------------------GFLALVDVHLKIPAKKIIAFIGPS 55 (274)
T ss_pred cccccCCCCceEEEeeEEEEeC----------------------------------CeEEEeeeeeEEcCCCEEEEECCC
Confidence 3445666666788888876521 135899999999999999999999
Q ss_pred CCcHHHHHHHHhcCCCCCC--CcceEEEECCeeCCCC-----CccceEEEEcCCCCCCCCCCHHHHHHHHhHhcCCCchh
Q 000529 188 SSGKTTLLLALAGKLDPSL--KVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRY 260 (1441)
Q Consensus 188 GsGKSTLL~~L~G~l~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~ 260 (1441)
|||||||+++|+|.+++.. ..+|+|.++|+++... ..++.++|++|++..++ .||.||+.++....+...
T Consensus 56 GsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~-- 132 (274)
T PRK14265 56 GCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFP-KSIYENIAFAPRANGYKG-- 132 (274)
T ss_pred CCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcccc-ccHHHHHHhHHHhcCchH--
Confidence 9999999999999986310 1289999999987431 12457999999987776 499999988643221000
Q ss_pred hhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc----cccccccccccccCCChhhhhHHHHHH
Q 000529 261 EMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----ICADTMVGDEMRRGVSGGQKKRVTTGE 336 (1441)
Q Consensus 261 ~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt~vg~~~~rGLSGGqrkRvsia~ 336 (1441)
+ ....++..++.+||. +..++.+. .|||||||||+||+
T Consensus 133 ----~-----------------------------~~~~~~~~l~~~~l~~~l~~~~~~~~~-----~LSgGq~qrv~LAr 174 (274)
T PRK14265 133 ----N-----------------------------LDELVEDSLRRAAIWEEVKDKLKEKGT-----ALSGGQQQRLCIAR 174 (274)
T ss_pred ----H-----------------------------HHHHHHHHHHHcccchhhHHHhcCCcc-----cCCHHHHHHHHHHH
Confidence 0 001123456666653 33444444 49999999999999
Q ss_pred HHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEec---------CCeEEEEc
Q 000529 337 MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS---------DGQIVYQG 407 (1441)
Q Consensus 337 al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~---------~G~iv~~G 407 (1441)
||+.+|++|+|||||+|||..++..+.+.|+++. . +++|+.++|+.+++.+++|++++|+ +|++++.|
T Consensus 175 aL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g 251 (274)
T PRK14265 175 AIAMKPDVLLMDEPCSALDPISTRQVEELCLELK--E-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFS 251 (274)
T ss_pred HHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--c-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeC
Confidence 9999999999999999999999999999999874 2 3677788999999999999999997 89999999
Q ss_pred CHHHHH
Q 000529 408 PRELVL 413 (1441)
Q Consensus 408 ~~~~~~ 413 (1441)
+++++.
T Consensus 252 ~~~~~~ 257 (274)
T PRK14265 252 PTEQMF 257 (274)
T ss_pred CHHHHH
Confidence 998874
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=319.28 Aligned_cols=196 Identities=29% Similarity=0.417 Sum_probs=153.9
Q ss_pred eeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc---cccceEEEEeccCCCCCCCCC
Q 000529 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDIHSPFVT 945 (1441)
Q Consensus 869 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lT 945 (1441)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 469999999999999999999999999999999999865 347999999987532 223456999999987776 69
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCCcCCHHHHHHHHHHHHHhhCCCeeE
Q 000529 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS-------LVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1018 (1441)
Q Consensus 946 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-------~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLl 1018 (1441)
|+|++.+.... ...+ ..++.++..++.+..+. ... ..+..|||||||||+||++|+.+|++|+
T Consensus 93 v~e~l~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lll 162 (238)
T cd03249 93 IAENIRYGKPD-----ATDE----EVEEAAKKANIHDFIMSLPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILL 162 (238)
T ss_pred HHHHhhccCCC-----CCHH----HHHHHHHHcChHHHHHhhccccceeec-cCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999764321 1111 12223333333222111 111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1019 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1019 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
|||||+|||+.++..+++.|+++. +|+|||+++|+++ ++ +.||++++|++ |++++.|+.
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 221 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQVVEQGTH 221 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999987 7899999999986 34 48999999985 799998875
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=366.06 Aligned_cols=206 Identities=24% Similarity=0.330 Sum_probs=164.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1441)
.++|+|+|++|+|||.++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|++.+| +.
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLF-EG 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhh-hc
Confidence 46899999999999999999999999999999999999998 9999999999877654 57899999988666 57
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1441)
|++|||.++..- ...+...+ +.... ..++.++ .|+...||.+|+ .+
T Consensus 568 Ti~eNi~l~~~~----~~~~~i~~---------------------al~~~------~l~~~i~--~lp~gl~t~i~e-~G 613 (710)
T TIGR03796 568 TVRDNLTLWDPT----IPDADLVR---------------------ACKDA------AIHDVIT--SRPGGYDAELAE-GG 613 (710)
T ss_pred cHHHHhhCCCCC----CCHHHHHH---------------------HHHHh------CCHHHHH--hCcCcccceecc-CC
Confidence 999999875210 00010111 10000 0111121 356677899986 46
Q ss_pred cCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000529 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1441)
Q Consensus 322 rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G 401 (1441)
.+||||||||++||||++++|++|+||||||+||+.+..++.+.|++ .++| +|.++|..+ ....+|+|++|++|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T-~IiitHrl~-~i~~~D~Iivl~~G 687 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCT-CIIVAHRLS-TIRDCDEIIVLERG 687 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCE-EEEEecCHH-HHHhCCEEEEEeCC
Confidence 77999999999999999999999999999999999999999999875 2444 555666654 45679999999999
Q ss_pred eEEEEcCHHHHHH
Q 000529 402 QIVYQGPRELVLE 414 (1441)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1441)
+++++|+++++.+
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999874
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=315.77 Aligned_cols=206 Identities=21% Similarity=0.312 Sum_probs=166.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCeeCCCC-----CccceEEEEcCCCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1441)
++|+|+|+++++||+++|+||||||||||+++|+|.+++. ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 118 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence 5899999999999999999999999999999999998741 01289999999987531 1246799999998878
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc----cccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CADT 314 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 314 (1441)
+. ||+||+.+.....+...+ .+....++++++.+|+.. ..+.
T Consensus 119 ~~-tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 164 (272)
T PRK14236 119 PK-SIYENVVYGLRLQGINNR---------------------------------RVLDEAVERSLRGAALWDEVKDRLHE 164 (272)
T ss_pred cc-cHHHHHHHHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCChhHHHHhhC
Confidence 75 999999887543321000 001123456677788753 2344
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
.+ +.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.. + .+++.++|+.+++.+.+|+
T Consensus 165 ~~-----~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~-~tiiivtH~~~~~~~~~d~ 236 (272)
T PRK14236 165 NA-----FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--K-YTIVIVTHNMQQAARVSDY 236 (272)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEeCCHHHHHhhCCE
Confidence 44 44999999999999999999999999999999999999999999998742 3 5677788999999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 000529 395 IILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1441)
|++|++|+++..|+++++.
T Consensus 237 i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 237 TAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred EEEEECCEEEecCCHHHHh
Confidence 9999999999999988763
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=315.23 Aligned_cols=208 Identities=23% Similarity=0.325 Sum_probs=167.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcceEEEECCeeCCCC-----CccceEEEEcCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL--KVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1441)
+++|+|+|+.+++||+++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 369999999999999999999999999999999999987631 1379999999987531 113579999999989
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc----cccc
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----ICAD 313 (1441)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 313 (1441)
++.+||.||+.++....+...+ ++....++..++.+++. +..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRDR---------------------------------DHLMEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCcchhhhhhhc
Confidence 9999999999876542211000 00112234445555543 3445
Q ss_pred cccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcC
Q 000529 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1441)
Q Consensus 314 t~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D 393 (1441)
+.+++ ||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++. . ++++++++|+.+++.+++|
T Consensus 144 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~-~~tiii~sH~~~~~~~~~d 215 (252)
T PRK14272 144 TPATG-----LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK--K-VTTIIIVTHNMHQAARVSD 215 (252)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEeCCHHHHHHhCC
Confidence 55554 99999999999999999999999999999999999999999999864 2 3677778899999999999
Q ss_pred eEEEecCCeEEEEcCHHHHH
Q 000529 394 DIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1441)
+|++|++|++++.|+++++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 216 TTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988774
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=312.50 Aligned_cols=207 Identities=20% Similarity=0.297 Sum_probs=164.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcceEEEECCeeCCCC-----CccceEEEEcCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1441)
+++|+|+|+++++||+++|+||||||||||+++|+|..+ |+...+|+|.++|.++... ..++.++|++|++.+
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 358999999999999999999999999999999999865 3211389999999987431 123579999999887
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc----cccc
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----ICAD 313 (1441)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 313 (1441)
++ .||+||+.+.....+.... +.....+...++.+++. +..+
T Consensus 98 ~~-~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~i~~~~~ 143 (252)
T PRK14255 98 FP-FSIYENVIYGLRLAGVKDK---------------------------------AVLDEAVETSLKQAAIWDEVKDHLH 143 (252)
T ss_pred CC-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCccchhhHHh
Confidence 77 7999999986543221000 00011234456666653 2344
Q ss_pred cccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcC
Q 000529 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1441)
Q Consensus 314 t~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D 393 (1441)
..+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. + .++++++|+.+++.+.+|
T Consensus 144 ~~~~~-----LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d 215 (252)
T PRK14255 144 ESALS-----LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--Q-YTIILVTHSMHQASRISD 215 (252)
T ss_pred cCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--C-CEEEEEECCHHHHHHhCC
Confidence 55544 999999999999999999999999999999999999999999998743 3 567778899999999999
Q ss_pred eEEEecCCeEEEEcCHHHHH
Q 000529 394 DIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1441)
+|++|++|+++..|+..++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 216 KTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988764
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=357.59 Aligned_cols=209 Identities=22% Similarity=0.388 Sum_probs=165.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1441)
.++|+|+|++++|||.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 46999999999999999999999999999999999999998 9999999999887654 468999999987665 7
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1441)
|++|||.++..-. ...+.+.++++ . .-.++.++ .|++..||.+|+. +
T Consensus 432 Ti~~Ni~~~~~~~---~~~~~i~~al~---~------------------------~~l~~~i~--~lp~Gldt~ig~~-g 478 (582)
T PRK11176 432 TIANNIAYARTEQ---YSREQIEEAAR---M------------------------AYAMDFIN--KMDNGLDTVIGEN-G 478 (582)
T ss_pred hHHHHHhcCCCCC---CCHHHHHHHHH---H------------------------hCcHHHHH--hcccccCceeCCC-C
Confidence 9999998853100 00011111000 0 00111122 3667789999964 5
Q ss_pred cCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000529 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1441)
Q Consensus 322 rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G 401 (1441)
+.||||||||++|||||+++|++|+||||||+||+.++..+.+.|++.. .+ .+++.++|.. +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~-~tvI~VtHr~-~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KN-RTSLVIAHRL-STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CC-CEEEEEecch-HHHHhCCEEEEEECC
Confidence 6799999999999999999999999999999999999999999998752 33 4455566655 566789999999999
Q ss_pred eEEEEcCHHHHHH
Q 000529 402 QIVYQGPRELVLE 414 (1441)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1441)
+++++|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999998864
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=317.23 Aligned_cols=207 Identities=26% Similarity=0.318 Sum_probs=172.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc------cceEEEEcCCC--C
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHD--N 236 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d--~ 236 (1441)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++....+ ++.++|++|++ .
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 56999999999999999999999999999999999999987 9999999998765432 35799999986 3
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc-cccccc
Q 000529 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTM 315 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1441)
+.+..|+.|++.+...... .. ...+....++.+++.+||. ...++.
T Consensus 102 ~~~~~t~~~~l~~~~~~~~---------~~------------------------~~~~~~~~~~~~l~~~gl~~~~~~~~ 148 (268)
T PRK10419 102 VNPRKTVREIIREPLRHLL---------SL------------------------DKAERLARASEMLRAVDLDDSVLDKR 148 (268)
T ss_pred cCCCCCHHHHHHHHHHhhc---------cC------------------------CHHHHHHHHHHHHHHcCCChhHhhCC
Confidence 5678999999977532100 00 0011123467789999996 466776
Q ss_pred cccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
++. ||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++.. ..+++++.++|+.+++.+++|++
T Consensus 149 ~~~-----LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tiiivsH~~~~i~~~~d~i 222 (268)
T PRK10419 149 PPQ-----LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ-QFGTACLFITHDLRLVERFCQRV 222 (268)
T ss_pred Ccc-----CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-HcCcEEEEEECCHHHHHHhCCEE
Confidence 655 999999999999999999999999999999999999999999998754 33567777899999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 000529 396 ILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1441)
++|++|++++.|+.+++.
T Consensus 223 ~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 223 MVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEECCEEeeeCChhhcc
Confidence 999999999999988764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=353.72 Aligned_cols=207 Identities=26% Similarity=0.334 Sum_probs=177.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc------cceEEEEcCCC--C
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHD--N 236 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d--~ 236 (1441)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++ .
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~ 413 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYAS 413 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhh
Confidence 57999999999999999999999999999999999999988 9999999998765421 35799999986 5
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc-cccccc
Q 000529 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTM 315 (1441)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1441)
+++.+||.||+.+.....+... ..+....++++|+.+||+ ...++.
T Consensus 414 l~~~~tv~~~l~~~~~~~~~~~---------------------------------~~~~~~~~~~~L~~~gL~~~~~~~~ 460 (623)
T PRK10261 414 LDPRQTVGDSIMEPLRVHGLLP---------------------------------GKAAAARVAWLLERVGLLPEHAWRY 460 (623)
T ss_pred cCCCCCHHHHHHHHHHHcCCCC---------------------------------HHHHHHHHHHHHHHcCCCHHHhhCC
Confidence 8889999999998654322100 001123467789999996 567888
Q ss_pred cccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
+++ |||||||||+||+||+.+|++|||||||+|||..++.++++.|+++.+ ..+.+|+.++|+.+++.+++|+|
T Consensus 461 ~~~-----LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~-~~g~tvi~isHdl~~v~~~~dri 534 (623)
T PRK10261 461 PHE-----FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQR-DFGIAYLFISHDMAVVERISHRV 534 (623)
T ss_pred ccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEE
Confidence 776 999999999999999999999999999999999999999999998765 33567788999999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 000529 396 ILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1441)
++|++|++++.|+++++.
T Consensus 535 ~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 535 AVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred EEEECCEEEEecCHHHHh
Confidence 999999999999998874
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=353.63 Aligned_cols=201 Identities=28% Similarity=0.436 Sum_probs=165.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1441)
.++|+|+|++++|||.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+|+ .
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 428 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-A 428 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhc-c
Confidence 35899999999999999999999999999999999999998 9999999999887654 467999999986665 6
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCC------ccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL------DICADTM 315 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL------~~~~dt~ 315 (1441)
|++||+.++..-. . +..+.++++..|+ ++..||.
T Consensus 429 ti~~Ni~~~~~~~----~------------------------------------~~~i~~al~~~~l~~~i~~p~GldT~ 468 (574)
T PRK11160 429 TLRDNLLLAAPNA----S------------------------------------DEALIEVLQQVGLEKLLEDDKGLNAW 468 (574)
T ss_pred cHHHHhhcCCCcc----C------------------------------------HHHHHHHHHHcCCHHHHcCccccCch
Confidence 9999998863200 0 0012233334443 4567899
Q ss_pred cccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeE
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~v 395 (1441)
+|+ .++.||||||||++|||+++++|++|+|||||++||+.++..+.+.|++.. .++|+| .++|..+.+ ..+|+|
T Consensus 469 vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tvi-iitHr~~~~-~~~d~i 543 (574)
T PRK11160 469 LGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVL-MITHRLTGL-EQFDRI 543 (574)
T ss_pred hcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEE-EEecChhHH-HhCCEE
Confidence 996 356799999999999999999999999999999999999999999998763 344544 456655544 569999
Q ss_pred EEecCCeEEEEcCHHHHHH
Q 000529 396 ILLSDGQIVYQGPRELVLE 414 (1441)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1441)
++|++|++++.|+++++.+
T Consensus 544 ~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 544 CVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEEeCCeEEEeCCHHHHHh
Confidence 9999999999999998864
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=356.39 Aligned_cols=212 Identities=26% Similarity=0.415 Sum_probs=178.3
Q ss_pred ceeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCcc
Q 000529 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1441)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 921 (1441)
..++|+|++|+++. +++.+|+|+|++++|||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 36999999998742 124699999999999999999999999999999999998663 47999999998
Q ss_pred CCc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc------cccccCCC
Q 000529 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR------QSLVGLPG 992 (1441)
Q Consensus 922 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~------~~~vg~~~ 992 (1441)
.++ ..+++.++||+|++.+++ -|++||+.++. + +. .++.++++++.+++.+.. |+.+|..
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~- 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEG- 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCC-
Confidence 654 346778999999998876 59999997752 1 12 234577888998887653 4566654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 993 ~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
...||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +++|+|+++|+++ ....+|++++|++
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~- 548 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDN- 548 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeC-
Confidence 35699999999999999999999999999999999999999999999986 4899999999986 3467999999985
Q ss_pred cEEEEEcCC
Q 000529 1073 GREVYVGPL 1081 (1441)
Q Consensus 1073 G~~v~~G~~ 1081 (1441)
|+++..|+.
T Consensus 549 G~i~~~g~~ 557 (574)
T PRK11160 549 GQIIEQGTH 557 (574)
T ss_pred CeEEEeCCH
Confidence 899999885
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=313.96 Aligned_cols=208 Identities=23% Similarity=0.296 Sum_probs=168.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCeeCCCC-----CccceEEEEcCCCCCC
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1441)
Q Consensus 166 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1441)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +..+|+|.++|+++... ..++.++|++|++.++
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~ 100 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF 100 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccC
Confidence 5899999999999999999999999999999999999873 12479999999986421 1245699999998777
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcc----cccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CADT 314 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 314 (1441)
+ +||+||+.+.....+... . .+....+..+++.+||.+ ..++
T Consensus 101 ~-~tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 146 (261)
T PRK14258 101 P-MSVYDNVAYGVKIVGWRP---------K------------------------LEIDDIVESALKDADLWDEIKHKIHK 146 (261)
T ss_pred c-ccHHHHHHHHHHhcCCCc---------H------------------------HHHHHHHHHHHHHcCCcchhhhHhcC
Confidence 7 899999988643221100 0 001123566788888754 3344
Q ss_pred ccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCe
Q 000529 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1441)
Q Consensus 315 ~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~ 394 (1441)
.++ .||||||||++||++|+.+|++++|||||+|||..+...+.+.|++++.. .+++|+.++|+..++.+++|+
T Consensus 147 ~~~-----~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~-~~~tiiivsH~~~~i~~~~d~ 220 (261)
T PRK14258 147 SAL-----DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLR-SELTMVIVSHNLHQVSRLSDF 220 (261)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhcCE
Confidence 444 49999999999999999999999999999999999999999999987543 356677788999999999999
Q ss_pred EEEecC-----CeEEEEcCHHHHH
Q 000529 395 IILLSD-----GQIVYQGPRELVL 413 (1441)
Q Consensus 395 vilL~~-----G~iv~~G~~~~~~ 413 (1441)
|++|++ |+++++|+++++.
T Consensus 221 i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 221 TAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred EEEEccCCCcCceEEEeCCHHHHH
Confidence 999999 9999999999874
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=361.63 Aligned_cols=206 Identities=25% Similarity=0.405 Sum_probs=161.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1441)
+++|+|+|++++|||.++|+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.+| +.
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF-~g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLF-SG 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCcccc-cc
Confidence 46999999999999999999999999999999999999998 9999999999887654 46899999988665 57
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCccccccccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1441)
||+|||.++.... + .+...+++ +.. ..++.++ .|++..||.+|+ .+
T Consensus 570 TIreNI~~g~~~~---~-~e~i~~al---~~a------------------------~l~~~i~--~lp~GldT~ige-~G 615 (711)
T TIGR00958 570 SVRENIAYGLTDT---P-DEEIMAAA---KAA------------------------NAHDFIM--EFPNGYDTEVGE-KG 615 (711)
T ss_pred CHHHHHhcCCCCC---C-HHHHHHHH---HHc------------------------CCHHHHH--hCCCccCCcccC-CC
Confidence 9999999863210 0 00000000 000 0011122 355678999996 35
Q ss_pred cCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000529 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1441)
Q Consensus 322 rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~~G 401 (1441)
..||||||||++||||++++|+||+||||||+||+.+...+.+ ... ..+.+++.++|..+ ..+.+|+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~----~~~~TvIiItHrl~-~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS----RASRTVLLIAHRLS-TVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc----cCCCeEEEEeccHH-HHHhCCEEEEEECC
Confidence 6799999999999999999999999999999999999998887 221 23455566777665 55779999999999
Q ss_pred eEEEEcCHHHHHH
Q 000529 402 QIVYQGPRELVLE 414 (1441)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1441)
+++++|+++++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999999864
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=316.57 Aligned_cols=211 Identities=24% Similarity=0.380 Sum_probs=164.3
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|+++.++ +.+.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeH
Confidence 367888887653 123599999999999999999999999999999999998653 479999999865
Q ss_pred Cc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-c-----CCCC
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV-G-----LPGV 993 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v-g-----~~~~ 993 (1441)
.. ...++.++|++|++.+++. |++||+.+... ... ...+++.++.+++.+..+.+. | ...+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NAT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 42 2345679999999887775 99999976421 111 112344455555443332211 0 1124
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCc
Q 000529 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1441)
Q Consensus 994 ~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG 1073 (1441)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++ ++ +.+|++++|++ |
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g 213 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-G 213 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-C
Confidence 5799999999999999999999999999999999999999999999986 5899999999986 34 56999999985 8
Q ss_pred EEEEEcCC
Q 000529 1074 REVYVGPL 1081 (1441)
Q Consensus 1074 ~~v~~G~~ 1081 (1441)
++++.|+.
T Consensus 214 ~~~~~~~~ 221 (229)
T cd03254 214 KIIEEGTH 221 (229)
T ss_pred eEEEeCCH
Confidence 99988764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=315.77 Aligned_cols=204 Identities=16% Similarity=0.298 Sum_probs=162.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCcceEEEECCeeCCCC-----CccceEEEEcCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PSLKVSGRVTYNGHNMDEF-----VPERTAAYISQH 234 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~-----~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~ 234 (1441)
.++|+|+|++|++||+++|+|+|||||||||++|+|.++ |+ +|+|.++|+++... ..++.++|++|+
T Consensus 37 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 113 (271)
T PRK14238 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKT---TGKILYRDQNIFDKSYSVEELRTNVGMVFQK 113 (271)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCC---ceeEEECCEEcccccccHHHHhhhEEEEecC
Confidence 358999999999999999999999999999999999986 45 99999999987421 124579999999
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCC----cc
Q 000529 235 DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL----DI 310 (1441)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL----~~ 310 (1441)
+.+++ .||+||+.++.+..+.... ......+...++.+++ .+
T Consensus 114 ~~~~~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~~~~~l~~ 159 (271)
T PRK14238 114 PNPFP-KSIYDNVTYGPKIHGIKDK---------------------------------KTLDEIVEKSLRGAAIWDELKD 159 (271)
T ss_pred Ccccc-ccHHHHHHHHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCcchHHH
Confidence 87776 5999999987543211000 0001123344555543 23
Q ss_pred ccccccccccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHh
Q 000529 311 CADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYN 390 (1441)
Q Consensus 311 ~~dt~vg~~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~ 390 (1441)
..+..+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+ .+|+.++|+.+++.+
T Consensus 160 ~~~~~~-----~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiivsH~~~~i~~ 231 (271)
T PRK14238 160 RLHDNA-----YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK--KD-YSIIIVTHNMQQAAR 231 (271)
T ss_pred HHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH--cC-CEEEEEEcCHHHHHH
Confidence 334444 4499999999999999999999999999999999999999999999874 23 667778899999999
Q ss_pred hcCeEEEecCCeEEEEcCHHHHH
Q 000529 391 LFDDIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 391 l~D~vilL~~G~iv~~G~~~~~~ 413 (1441)
++|++++|++|++++.|+.+++.
T Consensus 232 ~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 232 ISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999988763
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=329.40 Aligned_cols=228 Identities=26% Similarity=0.376 Sum_probs=192.6
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
-++.+|++.++ +..++|+||||++++||++||+|.||||||||+|+|+|... +.+|+|.++|.+.
T Consensus 8 ll~~~~i~K~F-------------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSF-------------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEc-------------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEc
Confidence 35677776543 45689999999999999999999999999999999999766 4589999999986
Q ss_pred Ccc----ccceEEEEeccCCCCCCCCCHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000529 923 KQE----TFARISGYCEQNDIHSPFVTVYESLFYSAWLRL-PPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1441)
Q Consensus 923 ~~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~-~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 997 (1441)
... ....-++.|.|+..+.|++||.||+.++...+. ..-.+.+...+...++|+.+++....+++++ .||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCC
Confidence 432 234568999999999999999999988765443 2335666777788999999999644777766 599
Q ss_pred HHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCcEEEE
Q 000529 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1441)
Q Consensus 998 gGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~ 1077 (1441)
.||||.|.|||||..+++||+||||||.|+......+.+.++++.++|.+||++||.++ ++++.||++.+|.+ |+.+-
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~ 225 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVG 225 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEee
Confidence 99999999999999999999999999999999999999999999999999999999997 79999999999985 89999
Q ss_pred EcCC-CCc-chhHHHHH
Q 000529 1078 VGPL-GHH-SCHLISYF 1092 (1441)
Q Consensus 1078 ~G~~-~~~-~~~~~~yf 1092 (1441)
.++. ++. .++++...
T Consensus 226 ~~~~~~~~~~~~lv~~M 242 (500)
T COG1129 226 TRPTAAETSEDELVRLM 242 (500)
T ss_pred ecccccCCCHHHHHHHh
Confidence 8883 442 34455543
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=300.66 Aligned_cols=170 Identities=29% Similarity=0.415 Sum_probs=148.1
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccCCc
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 924 (1441)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (178)
T cd03229 2 ELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTD 66 (178)
T ss_pred EEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 4667766542 2469999999999999999999999999999999999865 348999999987542
Q ss_pred -----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000529 925 -----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1441)
Q Consensus 925 -----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 999 (1441)
...++.++|++|++.+++..|++|++.+. ||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 23456799999999888889999987532 8999
Q ss_pred HHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 1000 qrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++|
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 999999999999999999999999999999999999999999877 899999999986 466689999999863
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=275.90 Aligned_cols=215 Identities=25% Similarity=0.325 Sum_probs=179.1
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
++..+++++.+ +..++|.||+++.+.||.+.++||||||||||+++|.=... +.+|+..|.|...
T Consensus 2 sirv~~in~~y-------------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~f 66 (242)
T COG4161 2 SIQLNGINCFY-------------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHF 66 (242)
T ss_pred ceEEccccccc-------------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEeccccc
Confidence 35566666554 44679999999999999999999999999999999986544 2467777766432
Q ss_pred C-------c--cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000529 923 K-------Q--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGV 993 (1441)
Q Consensus 923 ~-------~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 993 (1441)
+ + ...|+.+|.|+|+..++|.+||.|||.=+ -.+. ...++++.+.+..++++.+.|.+.+|+. +
T Consensus 67 d~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enliea-p~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~-----p 139 (242)
T COG4161 67 DFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEA-PCRV-LGLSKDQALARAEKLLKRLRLKPYADRY-----P 139 (242)
T ss_pred ccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhh-hHHH-hCCCHHHHHHHHHHHHHHhccccccccC-----c
Confidence 1 1 23567899999999999999999998543 2222 2356677778889999999999999986 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecCc
Q 000529 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1441)
Q Consensus 994 ~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~gG 1073 (1441)
-.|||||+|||+|||||+.+|++|++||||+.|||+-..++.+.|++++..|.|=+++||.... .-+.+.+++.|.+ |
T Consensus 140 lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme~-g 217 (242)
T COG4161 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYMEN-G 217 (242)
T ss_pred eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeeec-C
Confidence 4699999999999999999999999999999999999999999999999999999999998653 4457899999985 8
Q ss_pred EEEEEcCC
Q 000529 1074 REVYVGPL 1081 (1441)
Q Consensus 1074 ~~v~~G~~ 1081 (1441)
+++..|+.
T Consensus 218 ~ive~g~a 225 (242)
T COG4161 218 HIVEQGDA 225 (242)
T ss_pred eeEeecch
Confidence 99999985
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=347.20 Aligned_cols=214 Identities=22% Similarity=0.248 Sum_probs=174.3
Q ss_pred eEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcC-----
Q 000529 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG----- 919 (1441)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g----- 919 (1441)
+++|+++++. ++.+|+|+|+++++||+++|+|||||||||||++|+|.....+.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~ 68 (520)
T TIGR03269 2 EVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEK 68 (520)
T ss_pred EEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccc
Confidence 5677777652 3469999999999999999999999999999999999741013479999872
Q ss_pred ------------------ccCC----------c---cccceEEEEeccC-CCCCCCCCHHHHHHHHHHhcCCCCCCHHHH
Q 000529 920 ------------------YPKK----------Q---ETFARISGYCEQN-DIHSPFVTVYESLFYSAWLRLPPEVNSETR 967 (1441)
Q Consensus 920 ------------------~~~~----------~---~~~~~~~gyv~Q~-~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~ 967 (1441)
.++. . ...++.++|++|+ +.+++.+||+|++.+...... ...++.
T Consensus 69 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~~~~ 145 (520)
T TIGR03269 69 CGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG---YEGKEA 145 (520)
T ss_pred ccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcC---CCHHHH
Confidence 1110 0 1134568999997 677888999999988654321 233444
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHh-cCC
Q 000529 968 KMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1046 (1441)
Q Consensus 968 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~-~g~ 1046 (1441)
++++.++++.+||.+..++.+ ..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|+
T Consensus 146 ~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 146 VGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred HHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 567889999999988777764 46999999999999999999999999999999999999999999999965 489
Q ss_pred EEEEEecCCcHHHHHhhCeEEEEecCcEEEEEcCC
Q 000529 1047 TVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1047 tvi~~~H~~~~~i~~~~D~vllL~~gG~~v~~G~~ 1081 (1441)
|||++||++. .+.+.||++++|++ |++++.|+.
T Consensus 221 tviivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 253 (520)
T TIGR03269 221 SMVLTSHWPE-VIEDLSDKAIWLEN-GEIKEEGTP 253 (520)
T ss_pred EEEEEeCCHH-HHHHhcCEEEEEeC-CEEeeecCH
Confidence 9999999986 46678999999985 799988876
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=314.31 Aligned_cols=206 Identities=26% Similarity=0.417 Sum_probs=161.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1441)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++ ..
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NR 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cc
Confidence 45899999999999999999999999999999999999998 9999999998754322 35799999998665 57
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHc--CCccccccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVL--GLDICADTMVGDE 319 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 319 (1441)
||+||+.+... .. ..+...+.. . ....+..++.+ |++...+..+++
T Consensus 91 tv~~nl~~~~~--~~--~~~~~~~~~---~------------------------~~~~~~~l~~l~~~~~~~~~~~~~~- 138 (237)
T cd03252 91 SIRDNIALADP--GM--SMERVIEAA---K------------------------LAGAHDFISELPEGYDTIVGEQGAG- 138 (237)
T ss_pred hHHHHhhccCC--CC--CHHHHHHHH---H------------------------HcCcHHHHHhCcccccchhhcCCCc-
Confidence 99999987432 10 000000000 0 00112344555 555555555544
Q ss_pred cccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000529 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1441)
Q Consensus 320 ~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~ 399 (1441)
|||||||||+|||+++.+|++++|||||+|||+.++..+.+.|+++. . +.+|+.++|+.+++ +.+|++++|+
T Consensus 139 ----LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~-~~tiii~sH~~~~~-~~~d~v~~l~ 210 (237)
T cd03252 139 ----LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC--A-GRTVIIIAHRLSTV-KNADRIIVME 210 (237)
T ss_pred ----CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--C-CCEEEEEeCCHHHH-HhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999874 3 45667778888887 4699999999
Q ss_pred CCeEEEEcCHHHHHH
Q 000529 400 DGQIVYQGPRELVLE 414 (1441)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1441)
+|++++.|+++++.+
T Consensus 211 ~G~i~~~~~~~~~~~ 225 (237)
T cd03252 211 KGRIVEQGSHDELLA 225 (237)
T ss_pred CCEEEEEcCHHHHHh
Confidence 999999999887653
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=317.06 Aligned_cols=211 Identities=24% Similarity=0.311 Sum_probs=167.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCeeCCCCC----ccceEEEEcCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEFV----PERTAAYISQHDNHI 238 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~~~ 238 (1441)
+++|+|+|+++++||+++|+||||||||||+++|+|+++|. ...+|+|.++|+++.+.. .++.++|++|++.++
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 46899999999999999999999999999999999998751 012899999999876432 245799999998777
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCcccccccccc
Q 000529 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1441)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1441)
+ +||+||+.++........ ..+....+..+++.+||.+..++...
T Consensus 114 ~-~tv~eni~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~l~- 158 (276)
T PRK14271 114 P-MSIMDNVLAGVRAHKLVP---------------------------------RKEFRGVAQARLTEVGLWDAVKDRLS- 158 (276)
T ss_pred C-ccHHHHHHHHHHhccCCC---------------------------------HHHHHHHHHHHHHHcCCCchhhhHhh-
Confidence 7 899999988643211000 00111234567888888653222111
Q ss_pred ccccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000529 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1441)
Q Consensus 319 ~~~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL 398 (1441)
...+.|||||||||+|||+|+.+|++++|||||+|||..++..+.+.|+++.. + .+|++++|+.+++.+++|++++|
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~dri~~l 235 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAARISDRAALF 235 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 12344999999999999999999999999999999999999999999998642 3 57777889999999999999999
Q ss_pred cCCeEEEEcCHHHHH
Q 000529 399 SDGQIVYQGPRELVL 413 (1441)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1441)
++|++++.|+++++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 236 FDGRLVEEGPTEQLF 250 (276)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998874
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=309.92 Aligned_cols=199 Identities=24% Similarity=0.371 Sum_probs=162.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCeeCCCCCc---cceEEEEcCCCCCCCCC
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1441)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1441)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.+++ .
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 95 (225)
T PRK10247 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-D 95 (225)
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCHHHHHhccEEEeccccccc-c
Confidence 35999999999999999999999999999999999999887 9999999998765432 357999999987776 5
Q ss_pred CHHHHHHHHhHhcCCCchhhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhhHHHHHHHHHHcCCc-ccccccccccc
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTMVGDEM 320 (1441)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~ 320 (1441)
||+||+.+.....+. + . ....++.+++.+||. ...++.+++
T Consensus 96 tv~enl~~~~~~~~~--~---------~-------------------------~~~~~~~~l~~~~l~~~~~~~~~~~-- 137 (225)
T PRK10247 96 TVYDNLIFPWQIRNQ--Q---------P-------------------------DPAIFLDDLERFALPDTILTKNIAE-- 137 (225)
T ss_pred cHHHHHHhHHhhcCC--C---------h-------------------------HHHHHHHHHHHcCCChHHhcCCccc--
Confidence 999999885432210 0 0 012345688999995 466777765
Q ss_pred ccCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHhHhcCCeEEEEEecChhhHHhhcCeEEEec-
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS- 399 (1441)
Q Consensus 321 ~rGLSGGqrkRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~l~D~vilL~- 399 (1441)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+.. +++|++++|+.+++. .+|++++|+
T Consensus 138 ---LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvii~sh~~~~~~-~~d~i~~l~~ 212 (225)
T PRK10247 138 ---LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQ-NIAVLWVTHDKDEIN-HADKVITLQP 212 (225)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECChHHHH-hCCEEEEEec
Confidence 99999999999999999999999999999999999999999999876533 456666788888874 699999994
Q ss_pred CCeEEEEcCHH
Q 000529 400 DGQIVYQGPRE 410 (1441)
Q Consensus 400 ~G~iv~~G~~~ 410 (1441)
++..+.+|.++
T Consensus 213 ~~~~~~~~~~~ 223 (225)
T PRK10247 213 HAGEMQEARYE 223 (225)
T ss_pred ccchHhhhhhc
Confidence 66677777654
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=320.86 Aligned_cols=221 Identities=24% Similarity=0.293 Sum_probs=173.9
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCC---ceEEEEEEEcC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGDIRISG 919 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 919 (1441)
.+.++|+++.+. ++.+|+|+|++|++||+++|+|+|||||||||++|+|...+ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 478899887753 24699999999999999999999999999999999997542 13589999999
Q ss_pred ccCCc-----cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCC---------CCC-HHHHHHHHHHHHHHcCCcccc
Q 000529 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP---------EVN-SETRKMFIEEVMELVELKPLR 984 (1441)
Q Consensus 920 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~---------~~~-~~~~~~~v~~~l~~l~L~~~~ 984 (1441)
.++.. ...++.++|++|++.+++ .||+||+.+....+... ... .+..++.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87542 123567999999988777 59999998865332100 011 122345678899999885322
Q ss_pred cccccCCCCCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhC
Q 000529 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1064 (1441)
Q Consensus 985 ~~~vg~~~~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D 1064 (1441)
+..... .+..||||||||++||+||+.+|+||||||||+|||+.++..+++.|+++++ +.|||+++|+++ .+.+.+|
T Consensus 191 ~~~~~~-~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLDD-NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhcC-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 111111 2457999999999999999999999999999999999999999999999976 589999999986 4678899
Q ss_pred eEE-EEecCcEEEEEcCC
Q 000529 1065 ELF-LMKRGGREVYVGPL 1081 (1441)
Q Consensus 1065 ~vl-lL~~gG~~v~~G~~ 1081 (1441)
+++ +|+ .|++++.|+.
T Consensus 268 ~i~~~l~-~G~i~~~g~~ 284 (305)
T PRK14264 268 QTAVFLT-GGELVEYDDT 284 (305)
T ss_pred EEEEEec-CCEEEEeCCH
Confidence 975 566 5899999885
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=330.29 Aligned_cols=212 Identities=23% Similarity=0.346 Sum_probs=178.7
Q ss_pred eeeEeceEEEEeccchhhccCCCCCceeeeeceeEEEeCCeEEEEeccCCCChHHHHHhhcCCCCCceEEEEEEEcCccC
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 922 (1441)
.++++|++++++.+ ..++|+|+|+++++||.+||+|+||||||||++.|+|... +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 68999999998643 3469999999999999999999999999999999999765 3479999999886
Q ss_pred Cc---cccceEEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccc-------ccccCCC
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ-------SLVGLPG 992 (1441)
Q Consensus 923 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-------~~vg~~~ 992 (1441)
.. ...++.++++.|...++. -|+++||.++. ++.+ ++.+.++++.+||.+... +.+|+.
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~-----~~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge~- 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN-----PDAS----DEELWAALQQVGLEKLLESAPDGLNTWLGEG- 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC-----CCCC----HHHHHHHHHHcCHHHHHHhChhhhhchhccC-
Confidence 43 335677899999876664 69999997642 2233 345788999999987643 346654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCeeEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHhhCeEEEEecC
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 993 ~~~LSgGqrqRv~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~vllL~~g 1072 (1441)
.+.||||||||++|||+|++|.++++|||||.|||+.+.++|++.|.+-++ |+|+|++||+.. -.+.||+|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 467999999999999999999999999999999999999999999988764 899999999976 4688999999985
Q ss_pred cEEEEEcCCC
Q 000529 1073 GREVYVGPLG 1082 (1441)
Q Consensus 1073 G~~v~~G~~~ 1082 (1441)
|++++.|..+
T Consensus 548 Gkiie~G~~~ 557 (573)
T COG4987 548 GKIIEEGTHA 557 (573)
T ss_pred CeeeecCCHH
Confidence 8999999864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1441 | ||||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-10 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-10 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-10 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-10 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 6e-10 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 8e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 9e-10 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 9e-10 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-09 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-09 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-09 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-08 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-08 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-08 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-08 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-08 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 6e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 8e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-07 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 6e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 6e-07 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 7e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 7e-07 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-06 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 1e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 1e-06 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 3e-06 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 4e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-06 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 5e-06 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 5e-06 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 5e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 8e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 1e-05 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 1e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-05 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 5e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-05 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 5e-05 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 5e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-05 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 5e-05 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 8e-05 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 9e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 9e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-04 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-04 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-04 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-04 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-04 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-04 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 3e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-04 |
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1441 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 8e-26 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 9e-14 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 4e-24 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 5e-16 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-23 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 3e-14 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-23 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-14 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-21 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-14 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-09 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-08 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-20 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-12 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-10 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-08 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 6e-20 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 5e-16 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-19 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-11 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-12 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-08 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-06 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-18 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-09 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-08 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-18 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 6e-16 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-17 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-12 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 8e-16 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 7e-15 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 2e-15 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 9e-07 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-14 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-06 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-13 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 6e-11 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 1e-11 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 2e-04 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 9e-05 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 3e-10 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 4e-06 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 4e-10 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 6e-06 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 4e-10 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-09 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 6e-07 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 3e-09 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-06 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 4e-09 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 4e-08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 5e-09 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 6e-04 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 6e-09 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-07 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 5e-08 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 7e-08 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 8e-07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 9e-08 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 3e-06 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-07 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-04 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-07 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-07 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 5e-05 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-07 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 7e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 3e-04 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 5e-07 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-05 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 6e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 6e-07 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-06 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 1e-06 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-05 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 3e-06 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 1e-05 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 6e-04 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 1e-05 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 6e-05 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 7e-05 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 2e-04 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 3e-04 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 4e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 5e-04 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 6e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 8e-26
Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 16/186 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGY-PKKQETFA 928
L G+S G + L+G +GAGKTT + +++ + + G + + G ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV 86
Query: 929 RIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
R Y + + E L + A E +E E+ L +
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKIKDR 143
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 1048 VVCTIH 1053
++ + H
Sbjct: 199 ILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 9e-14
Identities = 59/265 (22%), Positives = 90/265 (33%), Gaps = 67/265 (25%)
Query: 161 TKK--HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218
K+ ILK +S ++ G + L+GP +GKTT L ++ + PS SG VT G N
Sbjct: 22 RKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKN 78
Query: 219 MDE----------FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSR 268
+ E ++PE AY M E L F A
Sbjct: 79 VVEEPHEVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYAS------------ 118
Query: 269 REKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328
E + + ++ GL V S G
Sbjct: 119 ----------------------SSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGM 151
Query: 329 KKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPE 387
+++ ++ P L +DE ++GLD ++ KQ G ++ E
Sbjct: 152 VRKLLIARALMVNPRL-AILDEPTSGLDVLNAREVRKILKQ--ASQEGLTILVSSHNMLE 208
Query: 388 TYNLFDDIILLSDGQIVYQG-PREL 411
L D I L+ +G IV G EL
Sbjct: 209 VEFLCDRIALIHNGTIVETGTVEEL 233
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 4e-24
Identities = 53/239 (22%), Positives = 90/239 (37%), Gaps = 36/239 (15%)
Query: 855 MPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT- 912
M M+LQ V E L +SG R G + L+G +GAGK+TL+ +AG G I
Sbjct: 1 MSIVMQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQF 58
Query: 913 GDIRISGYPKKQETFARISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFI 971
+ + + A Y Q PF V+ L + +TR +
Sbjct: 59 AGQPLEAWSATK--LALHRAYLSQ-QQTPPFATPVWHYLTLH---QHD-----KTRTELL 107
Query: 972 EEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIA-------VELVANPSIIFMDEPTS 1024
+V + L N LS + +R+ +A + ++ +DEP +
Sbjct: 108 NDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMN 162
Query: 1025 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGREVYVGP 1080
LD + + + + G +V + H D+ +L+K GG+ + G
Sbjct: 163 SLDVAQQSALDKILSALSQQGLAIVMSSH----DLNHTLRHAHRAWLLK-GGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 5e-16
Identities = 53/269 (19%), Positives = 87/269 (32%), Gaps = 82/269 (30%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T L +SG V+ G + L+GP +GK+TLL +AG + G + + G ++ +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG---KGSIQFAGQPLEAWSAT 69
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
+ A AY+SQ V L +
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLTL------------------------HQHDKTRTE 105
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRV--------TT 334
+ L LD +++ SGG+ +RV T
Sbjct: 106 LLNDV---------------AGALALDDKLGRST-NQL----SGGEWQRVRLAAVVLQIT 145
Query: 335 GEMMVGPALALFMDEISTGLDSS---TTFQIVNCFKQNIHINSGTAVISLL-------QP 384
+ L L +DE LD + +I++ Q G A++ +
Sbjct: 146 PQANPAGQL-LLLDEPMNSLDVAQQSALDKILSALSQ-----QGLAIVMSSHDLNHTLRH 199
Query: 385 APETYNLFDDIILLSDGQIVYQGPRELVL 413
A LL G+++ G RE VL
Sbjct: 200 A-------HRAWLLKGGKMLASGRREEVL 221
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 34/212 (16%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETF 927
L ++ G + A++G +G GK+TL+D+L G R G I
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------------V 64
Query: 928 ARISGYCEQNDIHSPF-VTVYESLF-----YSAWLRLPPEVNSETRKMFIEEVMELVELK 981
+ G+ Q SPF +V + + + P + ++ + L
Sbjct: 65 YQSIGFVPQF-FSSPFAYSVLDIVLMGRSTHINTFAKP----KSHDYQVAMQALDYLNLT 119
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1040
L + LS QR+ + IA + + +I +DEPTS LD IV+ + +
Sbjct: 120 HLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDL 174
Query: 1041 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
TVV T HQP+ + ++ L+ +
Sbjct: 175 AQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ 205
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 39/254 (15%), Positives = 86/254 (33%), Gaps = 63/254 (24%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+ + ++ + G + +LG GK+TLL L G P G++
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY---------- 65
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
++ ++ Q + +V + + G R + ++ + D V M
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLM-----G---RSTHINTFAKPKSH-------DYQVAM 110
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA- 344
+A L L L A +SGGQ++ + ++ A+A
Sbjct: 111 QA---------------LDYLNLTHLAKREFTS-----LSGGQRQLI-----LIARAIAS 145
Query: 345 ----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISL--LQPAPETYNLFDDIILL 398
+ +DE ++ LD + +++ + T V + + + +LL
Sbjct: 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLL 202
Query: 399 SDGQIVYQGPRELV 412
+ + R ++
Sbjct: 203 NKQNFKFGETRNIL 216
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 98.7 bits (247), Expect = 2e-23
Identities = 39/205 (19%), Positives = 82/205 (40%), Gaps = 27/205 (13%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GDIRISGYPKKQETFA 928
L ++ G + G +G GKTTL+ ++ Y+ G+I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-----YLKPLKGEIIYNGVPIT-KVKG 78
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
+I + + I ++V + L A L + K I + +E VE+ L++
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK-- 130
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRT 1047
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 131 ----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 1048 VVCTIHQPSIDIFEAFDELFLMKRG 1072
++ + D + +
Sbjct: 187 IISSRE-----ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 3e-14
Identities = 38/252 (15%), Positives = 79/252 (31%), Gaps = 72/252 (28%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE---- 221
+L+ ++ ++ G + GP GKTTLL ++ L P G + YNG + +
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGK 79
Query: 222 --FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
F+PE +++V + L A GV + +
Sbjct: 80 IFFLPEEIIVP--------RKISVEDYLKAVASLYGVKVNKNEIMDA------------- 118
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV---SGGQKKRVTTGE 336
L+ + + ++++ + S G +RV
Sbjct: 119 -----------------------LESVEV---------LDLKKKLGELSQGTIRRVQLAS 146
Query: 337 MMVG-PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395
++ + +D+ +D + +++ I G +IS + E + D
Sbjct: 147 TLLVNAEI-YVLDDPVVAIDEDSKHKVLKSIL-EILKEKGIVIIS----SREELSYCDVN 200
Query: 396 ILLSDGQIVYQG 407
L
Sbjct: 201 ENLHKYSTKIDK 212
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 5e-21
Identities = 46/224 (20%), Positives = 84/224 (37%), Gaps = 35/224 (15%)
Query: 835 MVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLV------LLNGVSGAFRPGVLTALM 888
L F +L F + D+ + L +LN G F + +M
Sbjct: 325 ENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384
Query: 889 GVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTV 946
G +G GKTTL+ +LAG + G + +S P+K TV
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK-------IAPKFPG-------TV 430
Query: 947 YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTI 1006
+ LF+ ++ + + F +V++ + + + V LS + +R+ I
Sbjct: 431 RQ-LFFK---KIRGQFLNP---QFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAI 478
Query: 1007 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1049
+ L I +DEP++ LD+ I + +R + +T
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 4e-14
Identities = 34/184 (18%), Positives = 68/184 (36%), Gaps = 23/184 (12%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIR------------ISGYPKKQE 925
RPG + L+G +G GK+T + +LAG + G + Y K
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 926 TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
+ Q + P L+L E ++ +++++L+ + +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME----KSPEDVKRYIKILQLENVLK 216
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
+ LS + +R I + V + DEP+S LD + + +R+ +
Sbjct: 217 R-----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT 271
Query: 1046 RTVV 1049
+ V+
Sbjct: 272 KYVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 7e-09
Identities = 40/267 (14%), Positives = 75/267 (28%), Gaps = 83/267 (31%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG--------- 216
+ +PG++ L+G GK+T L LAGK P+L GR
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPEWQEIIKYF 147
Query: 217 -------HNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRR 269
+ + A Q+ ++I ++ + + + ++ R
Sbjct: 148 RGSELQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQKVGELLKL-RMEKSPEDVKRY 205
Query: 270 EKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQK 329
K ++ + ++ L SGG+
Sbjct: 206 IKILQLEN--------------------VLKRDIEKL------------------SGGEL 227
Query: 330 KRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI----- 379
+R +G + DE S+ LD + + VI
Sbjct: 228 QRF-----AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS-LL-APTKYVICVEHD 280
Query: 380 -SLLQPAPETYNLFDDIILLSDGQIVY 405
S+L L D + ++ VY
Sbjct: 281 LSVLD------YLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 53/309 (17%), Positives = 91/309 (29%), Gaps = 84/309 (27%)
Query: 114 LPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHL--TILKDV 171
+P +RF ++ A++ L D + PS KK +L
Sbjct: 322 IPAENLRFRTEALQFRIADATEDLQ----------NDSASRAFSYPSLKKTQGDFVLNVE 371
Query: 172 SGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYI 231
G + +++G +GKTTL+ LAG L P G+ +P+ +
Sbjct: 372 EGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD----------IPKLNVSMK 418
Query: 232 SQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTE 291
Q TVR+ R + + +
Sbjct: 419 PQKIAPKFPGTVRQLFFKKIR-----------GQFLNPQFQTDV---------------- 451
Query: 292 GEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEIS 351
+K L +D D V +SGG+ +RV + PA +DE S
Sbjct: 452 -----------VKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALGIPADIYLIDEPS 495
Query: 352 TGLDSSTTFQIVNCFKQNIHINSGTAVI------SLLQPAPETYNLFDDIILLSDGQIVY 405
LDS ++ +++ + L D +I+
Sbjct: 496 AYLDSEQRIICSKVIRR-FILHNKKTAFIVEHDFIMAT------YLADKVIVFEGIPSKN 548
Query: 406 ---QGPREL 411
+ P L
Sbjct: 549 AHARAPESL 557
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 3e-20
Identities = 52/230 (22%), Positives = 93/230 (40%), Gaps = 32/230 (13%)
Query: 826 EASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDK---LVLLNGVSGAFRPG 882
E + + F PY + F ++ VD+ ++ ++ K L G R G
Sbjct: 323 EFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKG 382
Query: 883 VLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFARISGYCEQNDIH 940
+ ++G +G GKTT + +LAG T G + D+ ++ K Q I
Sbjct: 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ----YIK--------A 428
Query: 941 SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000
TVYE L +L + E+++ + + L V LS +
Sbjct: 429 EYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNVE-----DLSGGE 476
Query: 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVV 1049
+R+ IA L+ + I +DEP++ LD V R +R+ ++ +T +
Sbjct: 477 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-12
Identities = 39/194 (20%), Positives = 76/194 (39%), Gaps = 30/194 (15%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGDIRISGYPKK-- 923
+ + G++ ++G +G GKTT + +LAG+ + D I +
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
Q F R+ + + +V ++ + K + E+++ V+
Sbjct: 165 QNYFERLKNGEIRPVVKPQYV----------------DLLPKAVKGKVRELLKKVDEVGK 208
Query: 984 RQSLVGLPG--------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
+ +V ++ LS + +R+ IA L+ F DEP+S LD R V
Sbjct: 209 FEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVA 268
Query: 1036 RTVRNTVDTGRTVV 1049
R +R + G+ V+
Sbjct: 269 RVIRRLANEGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 1e-10
Identities = 60/298 (20%), Positives = 102/298 (34%), Gaps = 85/298 (28%)
Query: 162 KKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE 221
L+ G ++ G + ++GP GKTT + LAG +P+ G+V ++
Sbjct: 366 DYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDL----- 417
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
T AY Q+ E TV E L+ ++L+ +
Sbjct: 418 -----TVAYKPQYIKAEYEGTVYELLSKIDS-----------SKLNSNFYKTEL------ 455
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGP 341
LK LG+ D V D +SGG+ +RV ++
Sbjct: 456 ---------------------LKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRD 489
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTA-VIS----LLQPAPETYNLFDDII 396
A +DE S LD + + + N TA V+ ++ + D +I
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI------DYVSDRLI 543
Query: 397 LLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE--VTSKKDQEQYWAHKDRP 452
+ +G+ G L R+G+ FL +T ++D + RP
Sbjct: 544 VF-EGEPGRHGR---ALPPM-------GMREGMNRFLASVGITFRRDPDSG-----RP 585
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-08
Identities = 38/213 (17%), Positives = 66/213 (30%), Gaps = 66/213 (30%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL---KVSGRVTYNGHNMDEF 222
+ IVK G + ++GP +GKTT + LAG+L P+L S +E
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 223 VPERTAAYI--------SQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAG 274
Q+ + + + G E+L ++ K
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAV-------------KGKVRELLKKVDEVGKFEE 211
Query: 275 IKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTT 334
+ + +++ + L L SGG+ +RV
Sbjct: 212 VVKELELENVLDR--------------ELHQL------------------SGGELQRV-- 237
Query: 335 GEMMVGPALA-----LFMDEISTGLDSSTTFQI 362
+ AL F DE S+ LD ++
Sbjct: 238 ---AIAAALLRKAHFYFFDEPSSYLDIRQRLKV 267
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 6e-20
Identities = 48/227 (21%), Positives = 97/227 (42%), Gaps = 31/227 (13%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGDIRISGYPKKQETF 927
+L +S G L G++GAGKTTL+++L T +G + + G + +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGY 90
Query: 928 ------ARISGYCEQNDIH---SPFVTVYE---SLFYSAWLRLPPEVNSETRKMFIEEVM 975
I G+ + V + S + + + + +++ E R +++
Sbjct: 91 SAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKS-IGVYQDIDDEIRNE-AHQLL 146
Query: 976 ELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
+LV + Q +G LST +++R+ IA L+ P ++ +DEP +GLD A ++
Sbjct: 147 KLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLL 201
Query: 1036 RTVR--NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
+ + ++ H +I F ++ L+K G+ + G
Sbjct: 202 SILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGA 246
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 5e-16
Identities = 58/264 (21%), Positives = 92/264 (34%), Gaps = 63/264 (23%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
TILK +S + G +L G +GKTTLL L + SG V G +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYS 91
Query: 226 RTAA-----YISQ--HDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPD 278
++S + V + + +S K+ G+ D
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGERVIDVV------------------ISGAFKSIGVYQD 133
Query: 279 PDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMM 338
+E LK++G+ A +G +S G+K+RV M
Sbjct: 134 I------------DDEIRNEAHQLLKLVGMSAKAQQYIGY-----LSTGEKQRV-----M 171
Query: 339 VGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISL----LQPAPETY 389
+ AL L +DE + GLD +++ A+I ++
Sbjct: 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMI-YVTHFIEEITA-- 228
Query: 390 NLFDDIILLSDGQIVYQGPRELVL 413
F I+LL DGQ + QG E +L
Sbjct: 229 -NFSKILLLKDGQSIQQGAVEDIL 251
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 1e-19
Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 35/208 (16%)
Query: 881 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GDIRISGYPKKQETFARISGYCEQND 938
G ++G +G+GKTTL+ ++G G I + + Y
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYI-------RYSTNLP 81
Query: 939 IHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP--LRQSLVGLPGVNG 995
VTV + + L E+ R + E+++ ++L LR+ +
Sbjct: 82 EAYEIGVTVNDIV------YLYEELKGLDRDL-FLEMLKALKLGEEILRRK------LYK 128
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1055
LS Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ + H
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH-- 183
Query: 1056 SIDIFEAF---DELFLMKRGGREVYVGP 1080
++ + G R
Sbjct: 184 --ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 48/282 (17%), Positives = 81/282 (28%), Gaps = 71/282 (25%)
Query: 159 PSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218
L++++ V G ++LGP SGKTTLL A++G L P SG + NG
Sbjct: 12 SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPY---SGNIFINGME 66
Query: 219 MDEFVPERTAAYISQH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP 277
+ + Y + + + +TV + + +G+ R+
Sbjct: 67 VRKIRNYI--RYSTNLPEAYEIGVTVNDIVYLYEELKGL-----------DRDLF----- 108
Query: 278 DPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM 337
E LK L L + +S GQ V
Sbjct: 109 ---------------LEM-------LKALKL----GEEILRRKLYKLSAGQSVLVR---- 138
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLF 392
ALA + +DE +D++ I G I +
Sbjct: 139 -TSLALASQPEIVGLDEPFENVDAARRHVI-----SRYIKEYGKEGILVTHELDMLNLYK 192
Query: 393 DDIILLSDGQIVYQG--PREL----VLEFFESMGFKCPKRKG 428
+ G + EL ++E +
Sbjct: 193 EYKAYFLVGNRLQGPISVSELLESSIVEGERNDALLVLDIMD 234
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 5e-19
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 29/181 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L G + G + ++G +G GKTT + +LAG T G I D+ ++ K Q
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----Y 355
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
I TVYE L ++NS E+++ + + L V
Sbjct: 356 IK--------ADYEGTVYELLSKI----DASKLNSNFY---KTELLKPLGIIDLYDREV- 399
Query: 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1048
N LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 400 ----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 1049 V 1049
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-12
Identities = 38/188 (20%), Positives = 76/188 (40%), Gaps = 38/188 (20%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGDIRISGYPKK--QETFARISGY 933
+ G++ ++G +G GK+T + +LAG+ G + D I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 934 CEQNDIH----SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
+I +V ++ + K + E+++ + + +V
Sbjct: 104 ---GEIRPVVKPQYV----------------DLIPKAVKGKVIELLKKADETGKLEEVVK 144
Query: 990 LPGVNG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
+ LS + +R+ IA L+ N + F DEP+S LD R R +R
Sbjct: 145 ALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL 204
Query: 1042 VDTGRTVV 1049
+ G++V+
Sbjct: 205 SEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-08
Identities = 66/349 (18%), Positives = 114/349 (32%), Gaps = 102/349 (29%)
Query: 114 LPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSG 173
L VRF I+ + E L+ Y ++ L+ G
Sbjct: 259 LKDENVRFRPYEIKFTKTGERVEI---------ERETLVTYPRLVKDYGSF--RLEVEPG 307
Query: 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQ 233
+K G + ++GP GKTT + LAG +P+ G++ ++ T AY Q
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDL----------TVAYKPQ 354
Query: 234 HDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGE 293
+ E TV E L+ ++L+ +
Sbjct: 355 YIKADYEGTVYELLSKIDA-----------SKLNSNFYKTEL------------------ 385
Query: 294 EANVITDYYLKVLGLDICADTMVGDEMRRGV---SGGQKKRVTTGEMMVGPALALFMDEI 350
LK LG+ D R V SGG+ +RV ++ A +DE
Sbjct: 386 ---------LKPLGII--------DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEP 428
Query: 351 STGLDSSTTFQIVNCFKQNIHINSGTA-VIS----LLQPAPETYNLFDDIILLSDGQIVY 405
S LD + + + N TA V+ ++ + D +++ +G+
Sbjct: 429 SAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID------YVSDRLMVF-EGEPGK 481
Query: 406 QGPRELVLEFFESMGFKCPKRKGVADFLQE--VTSKKDQEQYWAHKDRP 452
G + R+G+ FL +T ++D + RP
Sbjct: 482 YGRALPPM----------GMREGMNRFLASIGITFRRDPDTG-----RP 515
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 38/216 (17%), Positives = 65/216 (30%), Gaps = 72/216 (33%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL---KVSGRVTYNGHNMDEF 222
+ +VK G + ++GP +GK+T + LAG+L P+L S +E
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94
Query: 223 VPERTAAYI--------SQHDNHIGEMT---VRETLAFAARCQGVGTRYEMLTELSRREK 271
Q+ + I + V E L + + +L K
Sbjct: 95 QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL----------KKADETGKLEEVVK 144
Query: 272 AAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKR 331
A ++ + + ++ L SGG+ +R
Sbjct: 145 ALELEN--------------------VLEREIQHL------------------SGGELQR 166
Query: 332 VTTGEMMVGPALA-----LFMDEISTGLDSSTTFQI 362
V + AL F DE S+ LD
Sbjct: 167 V-----AIAAALLRNATFYFFDEPSSYLDIRQRLNA 197
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 2e-18
Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETF 927
L +G + G + ++G +G GKTT +L G G +T + +I Y K Q F
Sbjct: 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIF 340
Query: 928 ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
+ TV + +L + T F EEV + + L L +S
Sbjct: 341 P------------NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESN 382
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
V N LS + ++L IA L + +D+P+S LD IV + ++ +
Sbjct: 383 V-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437
Query: 1048 VVCTI 1052
V I
Sbjct: 438 VTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 6e-12
Identities = 38/189 (20%), Positives = 74/189 (39%), Gaps = 31/189 (16%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDI 939
+ + ++G +G GKTT++ +LAG I + K E R G +I
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEI----IPNFGDPNSKVGKDEVLKRFRG----KEI 74
Query: 940 HSPFVTVYESLFYSAWLRLPP-------EVNSETRKMFIEEVMELVELKPLRQSLVGLPG 992
++ F +Y + L E S+ K + E++ ++ + + + L
Sbjct: 75 YNYFKELYSNE-------LKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLN 127
Query: 993 VNG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
+ LS +RL +A L+ + D+P+S LD R + + +R +
Sbjct: 128 MTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK- 186
Query: 1045 GRTVVCTIH 1053
+ V+ H
Sbjct: 187 NKYVIVVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 53/340 (15%), Positives = 101/340 (29%), Gaps = 99/340 (29%)
Query: 168 LKDVS-GIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL-KVSGRVTYN-------GHN 218
K K + +LG GKTT+L LAG++ P+ + +V + G
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 219 MDEFVPE-----RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAA 273
+ + E + Q+ + + GT E+LT++ R K
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASK------FLK-------GTVNEILTKIDERGKKD 120
Query: 274 GIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT 333
+K ++ + +L SGG +R+
Sbjct: 121 EVKELLNMTNLW--------------NKDANIL------------------SGGGLQRL- 147
Query: 334 TGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI------SLL 382
+V +L D+ S+ LD + ++ + VI +L
Sbjct: 148 ----LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE---LLKNKYVIVVDHDLIVL 200
Query: 383 QPAPETYNLFDDIILLSDGQIVYQG------PRELVLEFF------ESMGFKCPKRKGVA 430
L D I ++ VY R + F E+M + + K +
Sbjct: 201 D------YLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFML 254
Query: 431 DFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHV 470
+ ++ KD + K+ +F +
Sbjct: 255 KEVSDLDLSKDLKTKM---KWTKIIKKLGDFQLVVDNGEA 291
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 5e-08
Identities = 50/289 (17%), Positives = 90/289 (31%), Gaps = 84/289 (29%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
L +G K G + +LGP GKTT L G++ G VT +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL------- 332
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
+Y Q I P+ D V
Sbjct: 333 --SYKPQR----------------------------------------IFPNYDGTVQQY 350
Query: 287 AASTEGEEANVITDYY---LKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
+ + + + ++ K L L ++ V D +SGG+ +++ + A
Sbjct: 351 LENASKDALSTSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLAKEAD 405
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTA-VIS----LLQPAPETYNLFDDIILL 398
+D+ S+ LD + + K+ +I + + D II+
Sbjct: 406 LYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHD------YIADRIIVF 459
Query: 399 SDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE--VTSKKDQEQY 445
G+ G + + G+ +FL+E VT ++D E
Sbjct: 460 -KGEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDAETG 497
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 3e-18
Identities = 57/288 (19%), Positives = 103/288 (35%), Gaps = 74/288 (25%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
LK ++ +K G +T +LG GK+TL G L PS SGR+ ++ +D +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKG 78
Query: 228 AAYISQH--------DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
+ + DN + +V + ++F A +
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKL----------------------- 115
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
+E D LK G++ D +S GQKKRV
Sbjct: 116 -----------PEDEIRKRVDNALKRTGIEHLKDKPTHC-----LSFGQKKRV------- 152
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYN 390
A+A L +DE + GLD +I+ + + G +I
Sbjct: 153 --AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGITIIIATHDIDIVPL 209
Query: 391 LFDDIILLSDGQIVYQGPRELVL---EFFESMGFKCPKRKGVADFLQE 435
D++ ++ +G+++ QG + V E + + P+ + + L+E
Sbjct: 210 YCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 6e-16
Identities = 53/215 (24%), Positives = 100/215 (46%), Gaps = 32/215 (14%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYP--KKQETF 927
L G++ + G +TA++G +G GK+TL G + + +G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 928 ARIS---GYCEQNDIHSP---FV--TVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELV 978
++ G Q+ P +VY+ + F + ++LP + E RK ++ ++
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQDVSFGAVNMKLPED---EIRKR-VDNALKRT 131
Query: 979 ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
++ L+ + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 132 GIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186
Query: 1039 RN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ G T++ H + D +F+MK G
Sbjct: 187 VEMQKELGITIIIATHDID-IVPLYCDNVFVMKEG 220
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 88.4 bits (218), Expect = 1e-17
Identities = 96/594 (16%), Positives = 182/594 (30%), Gaps = 178/594 (29%)
Query: 67 EAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEV------- 119
+AF V N ++ Q + +++ E+D+ ++ K+ + + T+
Sbjct: 27 DAF---VDNFDCKDVQDMPKSILSKEEIDH---IIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 120 RF--EHLTIEAEAFLAS--KALPSFTKFFTTIFEDLLNYLH--ILPSTKKHLTILKDVSG 173
+F E L I + FL S K T ++ + + L+ K +++ L+
Sbjct: 81 KFVEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 174 I------VKPGRLTLLLGPPSSGKTTL--------------------------------- 194
+ ++P + L+ G SGKT +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 195 --LLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQH---------DNHIGEMTV 243
L L ++DP+ + N + + N V
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN------V 253
Query: 244 R--ETL-AFAARCQG-VGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVIT 299
+ + AF C+ + TR++ +T+ I D T E +++
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-----TPDEVKSLL- 307
Query: 300 DYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGP-ALALFMDEISTGLDSST 358
LK L ++ R V P L++ + I GL +
Sbjct: 308 ---LKYLDCRP-------QDLPREVLTT------------NPRRLSIIAESIRDGLATWD 345
Query: 359 TFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD-------------GQIVY 405
++ VNC K I S +++L+PA E +FD + + ++
Sbjct: 346 NWKHVNCDKLTTIIESS---LNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 406 QGPRELVLEFFE-SMGFKCPKRK--GVADFLQEVTSKKDQ---------EQYWAHKDRP- 452
+V + + S+ K PK + E+ K + + Y K
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 453 ------------YRFV-----------KVQEFVAAFQSFH-VGQKLSDELQTPFDKSKSH 488
Y + ++ F F F + QK+ + T ++ S S
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSI 520
Query: 489 RAALTT-KVYGVGKRELLKACTSRELL-------LMKRNSFVYIFK---LIQIG 531
L K Y K + E L L K + K L++I
Sbjct: 521 LNTLQQLKFY---KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.7 bits (193), Expect = 1e-14
Identities = 95/622 (15%), Positives = 180/622 (28%), Gaps = 193/622 (31%)
Query: 773 FLNQFEK----------PRAVITEEFESDE---QDNRIGGTVQLSNCGESGNDNR-ERNS 818
F + F P++++++E E D + + GT++L S + ++
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKE-EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 819 SSSLTE-----AEASHPKKRGMVLPFEPYSLTFDEVV--------YSVDMPQQM-KLQGV 864
L ++R + Y D + Y+V Q KL+
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR-- 141
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYITGDI---RISGY 920
L+ L RP + GV G+GKT + +DV K + I +
Sbjct: 142 --QALLEL-------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 921 PKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL 980
+ + Q D + + + + ++S E+ L++
Sbjct: 193 NSPETVLEMLQKLLYQID--PNWTSRSDHSS-----NIKLRIHSIQ-----AELRRLLKS 240
Query: 981 KPLRQSLVGLPGV-------------------------NGLSTEQRKRLTI--------- 1006
KP L+ L V + LS +++
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 1007 --AVELVANPSIIFMDEPTSGLDARAAAI----------VMRTVRNTVDTGRTVVC---- 1050
L+ ++D L +R T D + V C
Sbjct: 301 DEVKSLLLK----YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 1051 TIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEAIPGVEKIKDGYNPATW 1110
TI + S+++ E E R+++ +S F P I P
Sbjct: 357 TIIESSLNVLEP-AEY-------RKMF---------DRLSVFP--PSA-HI-----PTI- 390
Query: 1111 MLEV---SASSQEVALGVDFCDIYKRSELYRRNK-------LLIEDLSKPAPGSKDLH-- 1158
+L + +V + V+ +K S + ++ K + +L LH
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKL--HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 1159 FATQYS-QSAFSQFMACLWKQHWSYWRNPAYTAVRFLFTAFIALLLGSIFWDLG---GKT 1214
Y+ F Y Y + +G
Sbjct: 449 IVDHYNIPKTF-----DSDDLIPPYLDQ--Y-----------------FYSHIGHHLKNI 484
Query: 1215 EKRQDLSNAMGSMFTALIFLGFEYCISVQPVVFVERMVFYREVAAGMFSGIPWALAQIMI 1274
E + ++ +F ++FL F F+E+ + + A I L Q+
Sbjct: 485 EHPERMT-----LFR-MVFLDFR---------FLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 1275 EIPYVFVQSLIYSSIVYAMMSF 1296
PY+ Y +V A++ F
Sbjct: 530 YKPYICDNDPKYERLVNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 1e-12
Identities = 110/727 (15%), Positives = 209/727 (28%), Gaps = 248/727 (34%)
Query: 137 LPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRL-TLLLGPPSSGKTTLL 195
+F F +D+ + + S ++ I+ + RL LL S + +
Sbjct: 26 EDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL---SKQEEMVQ 80
Query: 196 LALAGKLDPS---LKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAAR 252
+ L + L + +M T YI Q D + V FA
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMM------TRMYIEQRDRLYNDNQV-----FAKY 129
Query: 253 CQGVGTRYEMLTELSRREKAAGIKPDPDIDVF-MKAASTEGEEANVITDYYLK-VLGLDI 310
V +R + +L R+ ++P ++ + + + G K + LD+
Sbjct: 130 --NV-SRLQPYLKL--RQALLELRPAKNVLIDGVLGS---G-----------KTWVALDV 170
Query: 311 CADTMVGDEMRRGV---SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFK 367
C V +M + + T M+ L ++ D S+ ++
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL----- 225
Query: 368 QNIHINSGTAVISLL---QPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCP 424
I+S A + L +P + ++ + + + C
Sbjct: 226 ---RIHSIQAELRRLLKSKPYENCLLVLLNV---QNAKAW------------NAFNLSCK 267
Query: 425 KRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDK 484
L +T+ RF +V +F++A + H+ D
Sbjct: 268 -------IL--LTT---------------RFKQVTDFLSAATTTHI---SLDHHSMTLTP 300
Query: 485 SKSHRAALTTKVYGVGKREL-LKACTSRELLL-MKRNSFVYIFKLIQIGSITLVYMTLFF 542
+ +L K ++L + T+ L + I + I+ G T +
Sbjct: 301 DEV--KSLLLKYLDCRPQDLPREVLTTNPRRLSI-------IAESIRDGLATWDN----W 347
Query: 543 RTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKL-PVFYKQR--DFKFFPPWA 599
+ ++ D +T TI I ++ L P Y++ FPP A
Sbjct: 348 K-HVNCDKLT-----------TI----------IESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 600 YAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGA 659
IP L +W + VI D +++ L +
Sbjct: 386 --------HIPTILLS-LIW----FDVIKSDVM---------------VVVNKLHK---- 413
Query: 660 IGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMY-------AQNGIL 712
+LV +K K + S P +Y L
Sbjct: 414 --YSLV--------------------------EKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 713 ANEFLGH--SWKKFTPTSTESLGVQVLESREFFAHAYWYW-LG----------LGALFGF 759
+ H K F + L L+ Y+Y +G LF
Sbjct: 446 HRSIVDHYNIPKTFDS---DDLIPPYLDQ-------YFYSHIGHHLKNIEHPERMTLFR- 494
Query: 760 ILLLNVGF---------------ALALTFLNQFEKPRAVITEEFESDEQDNRIGGTVQ-- 802
++ L+ F L L Q + + I ++D + R+ +
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC---DNDPKYERLVNAILDF 551
Query: 803 LSNCGES 809
L E+
Sbjct: 552 LPKIEEN 558
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 8e-16
Identities = 54/239 (22%), Positives = 97/239 (40%), Gaps = 35/239 (14%)
Query: 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 902
+ V + +G P +K L VS G + G +G+GK+TL+ ++
Sbjct: 2 RIEVVNVSHIFH-------RGTPLEKKAL-ENVSLVINEGECLLVAGNTGSGKSTLLQIV 53
Query: 903 AG--RKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPF-VTVYESLFYSAWLRLP 959
AG T +GD+ G KK R G Q F V++ + ++
Sbjct: 54 AGLIEPT----SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFA------ 103
Query: 960 PE---VNSETRKMFIEEVMELVELKP---LRQSLVGLPGVNGLSTEQRKRLTIAVELVAN 1013
+ + + + +++ ME V L + P LS +++R+ IA +V
Sbjct: 104 VKNFYPDRDPVPL-VKKAMEFVGLDFDSFKDRV----P--FFLSGGEKRRVAIASVIVHE 156
Query: 1014 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
P I+ +DEP GLD ++R V G+TV+ H + D + ++++G
Sbjct: 157 PDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEKG 214
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 7e-15
Identities = 56/270 (20%), Positives = 95/270 (35%), Gaps = 75/270 (27%)
Query: 159 PSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218
T L++VS ++ G L+ G SGK+TLL +AG ++P+ SG V Y+G
Sbjct: 14 RGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDG-- 68
Query: 219 MDEFVPE--RTAAYISQH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275
+ E R Q+ ++ V + +AFA +
Sbjct: 69 ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP------------------- 109
Query: 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR----GVSGGQKKR 331
+ + ++ +GLD D + +SGG+K+R
Sbjct: 110 ----------------DRDPVPLVKKAMEFVGLDF-------DSFKDRVPFFLSGGEKRR 146
Query: 332 VTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLL 382
V A+A L +DE GLD ++ ++ G VI +
Sbjct: 147 V---------AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEK-WK-TLGKTVILIS 195
Query: 383 QPAPETYNLFDDIILLSDGQIVYQG-PREL 411
N D +++L G+ V+ G E
Sbjct: 196 HDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 2e-15
Identities = 46/204 (22%), Positives = 81/204 (39%), Gaps = 39/204 (19%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGDIRISGYPKKQETFA 928
L G+S + + G +++G SG+GK+TL+ +L T G + +K+ +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 929 R---ISGYCEQ--NDIHSPFVTVYES----LFYSAWLRLPPEVNSETRKMFIEEVMELVE 979
R + G+ Q I P +T E+ + + K E ++ +
Sbjct: 80 RNRKL-GFVFQFHYLI--PELTALENVIVPMLKM-------GKPKKEAKERGEYLLSELG 129
Query: 980 L------KPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1033
L KP LS +++R+ IA L P ++F DEPT LD+
Sbjct: 130 LGDKLSRKP-----------YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR 178
Query: 1034 VMRTVRNTVDTGRTVVCTIHQPSI 1057
VM + G ++V H+ +
Sbjct: 179 VMDIFLKINEGGTSIVMVTHEREL 202
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 9e-07
Identities = 64/253 (25%), Positives = 103/253 (40%), Gaps = 64/253 (25%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD-PSLKVSGRVTYNGHNMDEFV 223
ILK +S VK G ++G SGK+TLL L G LD P+ G+V G +D
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPT---EGKVFLEGKEVDYTN 72
Query: 224 PERTAA-------YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIK 276
+ + ++ Q I E+T E + G + +E+
Sbjct: 73 EKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKK-------EAKERG---- 121
Query: 277 PDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG---VSGGQKKRVT 333
E L LGL GD++ R +SGG+++RV
Sbjct: 122 ----------------EYL-------LSELGL--------GDKLSRKPYELSGGEQQRVA 150
Query: 334 TGEMMV-GPALALFMDEISTG-LDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL 391
+ P L LF DE TG LDS+ T ++++ F + I+ GT+++ ++ E L
Sbjct: 151 IARALANEPIL-LFADE-PTGNLDSANTKRVMDIFLK-IN-EGGTSIV-MVTHERELAEL 205
Query: 392 FDDIILLSDGQIV 404
+ + DG++V
Sbjct: 206 THRTLEMKDGKVV 218
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 38/215 (17%)
Query: 863 GVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGDIRISG 919
+ E+ + L V+ + G ++MG SG+GK+T+++++ + T G +I+ +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 920 YPKKQETFAR---ISGYCEQ--NDIHSPFVTVYES----LFYSAWLRLPPEVNSETRKMF 970
+ T R I G+ Q N I P +T E+ L + + E R+
Sbjct: 72 LDDDELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGE----ERRKR 124
Query: 971 IEEVMELVEL-------KPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1023
E +++ EL KP N LS Q++R+ IA L NP II D+PT
Sbjct: 125 ALECLKMAELEERFANHKP-----------NQLSGGQQQRVAIARALANNPPIILADQPT 173
Query: 1024 SGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSI 1057
LD++ +M+ ++ + G+TVV H ++
Sbjct: 174 WALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 52/256 (20%), Positives = 94/256 (36%), Gaps = 65/256 (25%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD-PSLKVSGRVTYNGHNMDEFV 223
+ LK+V+ +K G ++GP SGK+T+L + G LD P+ G V + ++
Sbjct: 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTML-NIIGCLDKPT---EGEVYIDNIKTNDLD 73
Query: 224 PERTAAY-------ISQHDNHIGEMTVRETLAFAA---RCQGVGTRYEMLTELSRREKAA 273
+ + Q N I +T E + + RR++A
Sbjct: 74 DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE-------ERRKRA- 125
Query: 274 GIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG---DEMRRGVSGGQKK 330
E LK+ L + +++ SGGQ++
Sbjct: 126 -------------------LEC-------LKMAEL---EERFANHKPNQL----SGGQQQ 152
Query: 331 RVTTGEMMV-GPALALFMDEISTG-LDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPET 388
RV + P + + D+ T LDS T +I+ K+ ++ G V+ ++
Sbjct: 153 RVAIARALANNPPI-ILADQ-PTWALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINV 208
Query: 389 YNLFDDIILLSDGQIV 404
+ II L DG++
Sbjct: 209 ARFGERIIYLKDGEVE 224
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 2e-13
Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 39/204 (19%)
Query: 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQ- 924
L+GVS + G +T ++G +G+GK+TL++V+ G + G + + I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 925 ------ETFARISGYCEQNDIHSPF--VTVYE-----------SLFYSAWLRLPPEVNSE 965
TF Q P +TV E S S + + E
Sbjct: 80 YHYGIVRTF--------QT-PQ-PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE 129
Query: 966 TRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025
+ +++E ++L L G LS Q K + I L+ NP +I MDEP +G
Sbjct: 130 MVEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 183
Query: 1026 LDARAAAIVMRTVRNTVDTGRTVV 1049
+ A + V G T +
Sbjct: 184 VAPGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 6e-11
Identities = 52/198 (26%), Positives = 75/198 (37%), Gaps = 41/198 (20%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
L VS V G +TL++GP SGK+TL+ + G L GRV + ++ P
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 76
Query: 225 ERTAAY-IS---QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
Y I Q + EMTV E L C G + + ++ +
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV----- 131
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE---- 336
E+A I L+ L L D G+ +SGGQ K V E
Sbjct: 132 ------------EKAFKI----LEFLKLSHLYDRKAGE-----LSGGQMKLV---EIGRA 167
Query: 337 MMVGPALALFMDEISTGL 354
+M P + + MDE G+
Sbjct: 168 LMTNPKM-IVMDEPIAGV 184
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 1e-11
Identities = 62/278 (22%), Positives = 103/278 (37%), Gaps = 88/278 (31%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKV-SGRVTYNGHNMDEFVP- 224
IL+ +S V PG + ++GP SGK+TL LAG+ +V G V + G ++ P
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLLALSPE 92
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQ------GVGTRYEMLTELSRREKAAGIKPD 278
+R I +AF Q GV ++ + T L+ G +
Sbjct: 93 DRAGEGI--------------FMAF----QYPVEIPGVSNQFFLQTALNAVRSYRGQETL 134
Query: 279 PDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM-RRGV----SGGQKKRVT 333
D F + + +L + +++ R V SGG+KKR
Sbjct: 135 DRFD-FQDLMEEK-----------IALLKMP--------EDLLTRSVNVGFSGGEKKR-- 172
Query: 334 TGE----MMVGPALALFMDEISTGLDSSTTFQI---------VNCFKQNIHINSGTAVIS 380
+ ++ P L + +DE +GLD I VN + +++
Sbjct: 173 -NDILQMAVLEPELCI-LDESDSGLD------IDALKVVADGVNSLRDG---KRSFIIVT 221
Query: 381 ----LLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 414
+L Y D + +L G+IV G LV +
Sbjct: 222 HYQRILD-----YIKPDYVHVLYQGRIVKSGDFTLVKQ 254
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 54/199 (27%), Positives = 80/199 (40%), Gaps = 56/199 (28%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GDIRISG---- 919
EDK +L G+S PG + A+MG +G+GK+TL LAGR+ Y +T G + G
Sbjct: 31 EDKAIL-RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLL 87
Query: 920 -----------------YPKKQETFARISGYCEQNDIHSPFVTVYESLFYSA----WLRL 958
YP E I G V+ L + R
Sbjct: 88 ALSPEDRAGEGIFMAFQYP--VE----IPG-----------VSNQFFLQTALNAVRSYRG 130
Query: 959 PPEVNSETRKMFIEEVMELVELKP--LRQSLVGLPGVN-GLSTEQRKRLTIAVELVANPS 1015
++ + +EE + L+++ L +S VN G S ++KR I V P
Sbjct: 131 QETLDRFDFQDLMEEKIALLKMPEDLLTRS------VNVGFSGGEKKRNDILQMAVLEPE 184
Query: 1016 IIFMDEPTSGLDARAAAIV 1034
+ +DE SGLD A +V
Sbjct: 185 LCILDESDSGLDIDALKVV 203
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 2e-10
Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 30/164 (18%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGD-IRISGYPKKQETFAR 929
LLN + + G +G GK+TLM +A + G+ T + R
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT------------ 497
Query: 930 ISGYCEQN-DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
Y E + D +V + +F E T++ I++ + ++
Sbjct: 498 --VYVEHDIDGTHSDTSVLDFVF---------ESGVGTKEA-IKDKLIEFGFTDEMIAMP 545
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
++ LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 ----ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 9e-05
Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 16/132 (12%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
+ D++ ++GP +GK+TL+ L G+L P+ SG V N
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYT-HENC------- 736
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
AYI QH E + +T + + + R++ + ++A + D + K
Sbjct: 737 RIAYIKQHAFAHIESHLDKTPS-----EYIQWRFQTGEDRETMDRANRQINENDAEAMNK 791
Query: 287 AASTEGEEANVI 298
EG +
Sbjct: 792 IFKIEGTPRRIA 803
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 70/277 (25%), Positives = 108/277 (38%), Gaps = 77/277 (27%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKV-SGRVTYNGHNMDEFVP- 224
ILK V+ +V G + L+GP +GK+TL LAG P V G + +G N+ E P
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD--PEYTVERGEILLDGENILELSPD 75
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQ------GVGTRYEMLTELSRREKAAGIKPD 278
ER + LAF Q GV + L + +
Sbjct: 76 ERARKGL--------------FLAF----QYPVEVPGVTIANFLRLALQAKL-----GRE 112
Query: 279 PDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM- 337
+ F L++L D ++ + + G SGG+KKR ++
Sbjct: 113 VGVAEFWTKVKKA-----------LELLDWD---ESYLSRYLNEGFSGGEKKRNEILQLL 158
Query: 338 MVGPALALFMDEISTGLDSSTTFQI---------VNCFKQNIHINSGTAVIS----LLQP 384
++ P A+ +DE +GLD I VN + N G VI+ +L
Sbjct: 159 VLEPTYAV-LDETDSGLD------IDALKVVARGVNAMRGP---NFGALVITHYQRILN- 207
Query: 385 APETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGF 421
Y D + ++ DG++V G EL LE E+ G+
Sbjct: 208 ----YIQPDKVHVMMDGRVVATGGPELALE-LEAKGY 239
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 4e-06
Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 52/199 (26%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GDIRISG---- 919
+ + +L GV+ G + ALMG +GAGK+TL +LAG Y + G+I + G
Sbjct: 14 DGETIL-KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENIL 70
Query: 920 -----------------YPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEV 962
YP E + G VT+ L + +L EV
Sbjct: 71 ELSPDERARKGLFLAFQYP--VE----VPG-----------VTIANFLRLALQAKLGREV 113
Query: 963 NSETRKMFIEEVMELVELKP--LRQSLVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFM 1019
+++ +EL++ L + +N G S ++KR I LV P+ +
Sbjct: 114 GVAEFWTKVKKALELLDWDESYLSRY------LNEGFSGGEKKRNEILQLLVLEPTYAVL 167
Query: 1020 DEPTSGLDARAAAIVMRTV 1038
DE SGLD A +V R V
Sbjct: 168 DETDSGLDIDALKVVARGV 186
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 49/223 (21%), Positives = 87/223 (39%), Gaps = 72/223 (32%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRI 917
D V+L+ ++ + + G + ++G SG+GK+TL G+ + I
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLI 68
Query: 918 SGYPKK---------------QET--FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP 960
G+ Q+ R ++ +++ + P
Sbjct: 69 DGHDLALADPNWLRRQVGVVLQDNVLLNR---------------SIIDNISLAN-----P 108
Query: 961 EVNSETRKMFIEEVME----------LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVEL 1010
++ +E+V+ + EL+ ++VG G LS QR+R+ IA L
Sbjct: 109 GMS-------VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARAL 160
Query: 1011 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1053
V NP I+ DE TS LD + ++MR + GRTV+ H
Sbjct: 161 VNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 6e-06
Identities = 56/271 (20%), Positives = 100/271 (36%), Gaps = 97/271 (35%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
IL +++ +K G + ++G SGK+TL + P +G+V +GH++ P
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
R + Q DN + ++ + ++ A P ++
Sbjct: 80 WLRRQVGVVLQ-DNVLLNRSIIDNISLA-------------------------NPGMSVE 113
Query: 283 VFMKAASTEGEEANV---ITD----YYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVT 333
+ AA + A I++ Y +T+VG+ +G SGGQ++R+
Sbjct: 114 KVIYAA----KLAGAHDFISELREGY-----------NTIVGE---QGAGLSGGQRQRI- 154
Query: 334 TGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCFKQ----NIHINSGTAVI- 379
A+A L DE ++ LD + I I +I
Sbjct: 155 --------AIARALVNNPKILIFDEATSALDYESEHVI-----MRNMHKICKGRTVIIIA 201
Query: 380 ---SLLQPAPETYNLFDDIILLSDGQIVYQG 407
S ++ A D II++ G+IV QG
Sbjct: 202 HRLSTVKNA-------DRIIVMEKGKIVEQG 225
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 4e-10
Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 40/219 (18%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISGYPKKQ 924
L VS PG AL+G SGAGK+T++ D+ +G IRI G Q
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRIDGQDISQ 120
Query: 925 ETFA---RISGYCEQ-----NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEE-VM 975
T A G Q ND T+ +++ Y EV + + I + +M
Sbjct: 121 VTQASLRSHIGVVPQDTVLFND------TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIM 174
Query: 976 ELVELKPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1034
P ++ VG G+ LS +++R+ IA ++ P II +DE TS LD +
Sbjct: 175 AF----PEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229
Query: 1035 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073
++ V RT + H+ S + A D++ ++K G
Sbjct: 230 QASL-AKVCANRTTIVVAHRLST-VVNA-DQILVIKDGC 265
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 29/213 (13%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGDIRISGYPKKQETFA-- 928
L ++ G AL+G +G+GK+T+ +L R Y GDI+I G +
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVNKYNRNSI 91
Query: 929 -RISGYCEQ-----NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEE-VMELVELK 981
I G Q N+ T+ ++ Y EV T+ + + + L
Sbjct: 92 RSIIGIVPQDTILFNE------TIKYNILYGKLDATDEEVIKATKSAQLYDFIEAL---- 141
Query: 982 PLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
P + ++VG G+ LS +R+R+ IA L+ +P I+ DE TS LD++ + + V +
Sbjct: 142 PKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED 200
Query: 1041 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073
+ RT++ H+ S I A + + L+ +G
Sbjct: 201 -LRKNRTLIIIAHRLST-ISSA-ESIILLNKGK 230
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 52/266 (19%), Positives = 101/266 (37%), Gaps = 78/266 (29%)
Query: 161 TKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL-KVSGRVTYNGHNM 219
+ + LK ++ + G L+G SGK+T+ KL G + G N+
Sbjct: 29 KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA-----KLLYRFYDAEGDIKIGGKNV 83
Query: 220 DEFVPERTAAYISQHD--NHIG---------EMTVRETLAFAARCQGVGTRYEMLTELSR 268
++ +++ + IG T++ + +
Sbjct: 84 NK---------YNRNSIRSIIGIVPQDTILFNETIKYNILYG------------------ 116
Query: 269 REKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SG 326
K D + +KA + A + Y + L DT+VG+ +G+ SG
Sbjct: 117 -------KLDATDEEVIKAT----KSAQL----YDFIEALPKKWDTIVGN---KGMKLSG 158
Query: 327 GQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI----SL 381
G+++R+ ++ P + + DE ++ LDS T + +++ N +I S
Sbjct: 159 GERQRIAIARCLLKDPKI-VIFDEATSSLDSKTEYLFQKAV-EDLRKNRTLIIIAHRLST 216
Query: 382 LQPAPETYNLFDDIILLSDGQIVYQG 407
+ A + IILL+ G+IV +G
Sbjct: 217 ISSA-------ESIILLNKGKIVEKG 235
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 65/302 (21%), Positives = 102/302 (33%), Gaps = 108/302 (35%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
L ++ + G L ++G GK++LL AL ++D KV G V G
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG---------- 66
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP---DPDIDV 283
+ AY+ Q I ++RE + F G + E I+ PD+++
Sbjct: 67 SVAYVPQQ-AWIQNDSLRENILF-------GCQLEE----PYYRSV--IQACALLPDLEI 112
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTGEMMVGP 341
G+ T +G+ +GV SGGQK+RV
Sbjct: 113 L-----PSGDR-------------------TEIGE---KGVNLSGGQKQRV--------- 136
Query: 342 ALA----------LFMDEISTGLDSSTTFQIVNCFKQNIHIN---SGTAVI------SLL 382
+LA LF D +S +D+ I F+ I I S L
Sbjct: 137 SLARAVYSNADIYLFDDPLS-AVDAHVGKHI---FENVIGPKGMLKNKTRILVTHSMSYL 192
Query: 383 QPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQ 442
D II++S G+I G + +L + A+FL+ S
Sbjct: 193 PQV-------DVIIVMSGGKISEMGSYQELLA----------RDGAFAEFLRTYASHHHH 235
Query: 443 EQ 444
Sbjct: 236 HH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 47/216 (21%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
LNG++ + G L A++G G GK++L+ L K G + I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 930 ISGYCEQNDIHSPFV---TVYES-LFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LR 984
++ Y Q ++ ++ E+ LF + + + V++ L P L
Sbjct: 68 VA-YVPQ----QAWIQNDSLRENILF-----------GCQLEEPYYRSVIQACALLPDLE 111
Query: 985 ------QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
++ +G GVN LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 112 ILPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
Query: 1039 --RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ +T + H + D + +M G
Sbjct: 171 IGPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 4e-09
Identities = 49/210 (23%), Positives = 90/210 (42%), Gaps = 54/210 (25%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRI 917
+ + +L +S +P + A G SG GK+T+ AG I I
Sbjct: 12 DDSEQIL-RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITI 61
Query: 918 SGYPKKQETFA----RISGYCEQNDIHSPFV---TVYESLFYSAWLRLPPEVNSETRKMF 970
G P + +I G+ Q+ + T+ E+L Y L + E
Sbjct: 62 DGQPIDNISLENWRSQI-GFVSQD----SAIMAGTIRENLTYG----LEGDYTDE----- 107
Query: 971 IEEVMELVELKPLRQSLVGLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFM 1019
++ ++++L R + +P + L+TE QR+RL IA + NP I+ +
Sbjct: 108 --DLWQVLDLAFARSFVENMP--DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILML 163
Query: 1020 DEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
DE T+ LD+ + ++V + + +++ GRT +
Sbjct: 164 DEATASLDSESESMVQKAL-DSLMKGRTTL 192
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 4e-08
Identities = 59/256 (23%), Positives = 99/256 (38%), Gaps = 68/256 (26%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
IL+D+S +P + GP GK+T+ L P+ +G +T +G +D E
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLEN 73
Query: 226 -RTA-AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
R+ ++SQ D+ I T+RE L + G++ D +
Sbjct: 74 WRSQIGFVSQ-DSAIMAGTIRENLTY------------------------GLEGDYTDED 108
Query: 284 FMKAASTEGEEANVITDYYLKVL--GLDICADTMVGDEMRRGV--SGGQKKRVTTGEMMV 339
+ + A +++ + L +T VG+ RGV SGGQ++R+ +
Sbjct: 109 LWQVL----DLAFA--RSFVENMPDQL----NTEVGE---RGVKISGGQRQRLAIARAFL 155
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCFKQ----NIHINSGTAVI----SLLQPAPETYNL 391
L +DE + LDS + + Q ++ T VI S + A
Sbjct: 156 RNPKILMLDEATASLDSESESMV-----QKALDSLMKGRTTLVIAHRLSTIVDA------ 204
Query: 392 FDDIILLSDGQIVYQG 407
D I + GQI G
Sbjct: 205 -DKIYFIEKGQITGSG 219
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 5e-09
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 886 ALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFARISGYCEQNDIHSP 942
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 943 FVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002
++VY ++ Y LR V + R + E+ E + + L LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 1003 RLTIAVELVANPSIIFMDEPTSGLDAR 1029
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 16/77 (20%)
Query: 183 LLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-RTAAYISQ------HD 235
LLGP +GK+ L +AG + P G V NG ++ PE R ++ Q H
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH- 84
Query: 236 NHIGEMTVRETLAFAAR 252
++V +A+ R
Sbjct: 85 -----LSVYRNIAYGLR 96
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 6e-09
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
+K + V G++ L+G +GKTT L A+AG + G++ +NG ++
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77
Query: 227 TA----AYISQHDNHIGEMTVRETL---AFAAR-CQGVGTRYEMLTEL-----SRREKAA 273
A + + E+TV E L A+ + +G+ E + L R ++
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 274 G 274
G
Sbjct: 138 G 138
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 52.8 bits (128), Expect = 2e-07
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 28/193 (14%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKK 923
+ + G+ G + L+G +GAGKTT + +AG R G I I+ P
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 924 QETFARISGYCEQNDIHSP-----F--VTVYESLFYSAWLRLPPEVNSETRKMFIEEVME 976
I+ P F +TVYE+L A+ R E +E +
Sbjct: 77 VINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD----LEWIFS 124
Query: 977 LV-ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
L LK + L G LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 125 LFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 1036 RTVRNTVDTGRTV 1048
++ G T+
Sbjct: 180 EVIQKINQEGTTI 192
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 5e-08
Identities = 39/204 (19%), Positives = 76/204 (37%), Gaps = 35/204 (17%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GDIRISGYPK 922
+L +S + PG L+G +G+GK+TL+ T G I +
Sbjct: 31 EGGNAIL-ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITL 89
Query: 923 KQETFARISGYCEQNDI--HSPFVTVYESLFYSAWLRL---PPEVNSETRKMFIEEVMEL 977
++ + F +F S R P +S+ I +V +
Sbjct: 90 -EQWRKAFG-------VIPQKVF------IF-SGTFRKNLDPNAAHSDQE---IWKVADE 131
Query: 978 VELKPLRQSL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
V L+ + + + G LS ++ + +A +++ I+ +DEP++ LD
Sbjct: 132 VGLRSVIEQFPGKLDFVLVDGGCV-LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT 190
Query: 1031 AAIVMRTVRNTVDTGRTVVCTIHQ 1054
I+ RT++ TV+ +
Sbjct: 191 YQIIRRTLKQAF-ADCTVILCEAR 213
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 7e-08
Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 15/161 (9%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
+ GVS R G + L+G SG+GKTT++ ++AG R T G + G R++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
R G QN +TVY+++ + + P+ + R + E++ + L+
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLESYANRFP 143
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
+ LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 144 -----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 8e-07
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP- 224
++ VS ++ G + LLGP SGKTT+L +AG P+ G V G + + P
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQ 85
Query: 225 ERTAAYISQHD---NHIGEMTVRETLAFAARCQGV 256
+R + Q+ H MTV + ++F R + V
Sbjct: 86 KRNVGLVFQNYALFQH---MTVYDNVSFGLREKRV 117
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 9e-08
Identities = 56/279 (20%), Positives = 101/279 (36%), Gaps = 100/279 (35%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
+LKD++ ++ G+L + G +GKT+LL+ + G+L+ G++ ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP---DPDIDV 283
++ SQ + I T++E + F G Y+ R IK + DI
Sbjct: 70 RISFCSQF-SWIMPGTIKENIIF-------GVSYDE----YRYRSV--IKACQLEEDISK 115
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTGEMMVGP 341
F E + ++G+ G+ SGGQ+ R+
Sbjct: 116 F-----AEKDN-------------------IVLGE---GGITLSGGQRARI--------- 139
Query: 342 ALA----------LFMDEISTGLDSSTTFQIVNCFKQNIH-INSGTAVI------SLLQP 384
+LA L LD T +I F+ + + + I L+
Sbjct: 140 SLARAVYKDADLYLLDSPFGY-LDVLTEKEI---FESCVCKLMANKTRILVTSKMEHLKK 195
Query: 385 APETYNLFDDIILLSDGQIVYQGP-RELV---LEFFESM 419
A D I++L +G + G EL +F +
Sbjct: 196 A-------DKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 41/214 (19%), Positives = 84/214 (39%), Gaps = 45/214 (21%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L ++ G L A+ G +GAGKT+L+ ++ G + G I+ SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 930 ISGYCEQNDIHSPFV---TVYES-LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
IS +C Q ++ T+ E+ +F + V++ +L+
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIF-----------GVSYDEYRYRSVIKACQLEEDIS 114
Query: 986 SL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
+G G+ LS QR R+++A + + + +D P LD + +
Sbjct: 115 KFAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 173
Query: 1039 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ +T + + ++ + D++ ++ G
Sbjct: 174 VCKLMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 46/186 (24%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GDIRISGY--- 920
+ K+V L+ V+ G ++G SGAGKTT M ++AG + G++
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVA 70
Query: 921 --------PKKQET---FARISGYCEQNDIHSPFVTVYESLFYSAWLR-LPPEVNSETRK 968
P+ ++ F Q P +T +E++ + + E E RK
Sbjct: 71 SNGKLIVPPEDRKIGMVF--------QTWALYPNLTAFENIAFPLTNMKMSKE---EIRK 119
Query: 969 MFIEEVMELVELKPL-----RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1023
+EEV +++++ + R+ LS Q++R+ +A LV +PS++ +DEP
Sbjct: 120 R-VEEVAKILDIHHVLNHFPRE----------LSGAQQQRVALARALVKDPSLLLLDEPF 168
Query: 1024 SGLDAR 1029
S LDAR
Sbjct: 169 SNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 38/194 (19%), Positives = 65/194 (33%), Gaps = 56/194 (28%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
L +V+ ++ G +LGP +GKTT + +AG PS +G + ++ D V
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFD----DRLVAS 71
Query: 226 RTAAYISQHDNHIG----------EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275
+ D IG +T E +AF +
Sbjct: 72 NGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM------------------- 112
Query: 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG 335
+I ++ K+L + V + R +SG Q++RV
Sbjct: 113 -SKEEIRKRVEEV--------------AKILDI-----HHVLNHFPRELSGAQQQRVALA 152
Query: 336 EMMVGPALALFMDE 349
+V L +DE
Sbjct: 153 RALVKDPSLLLLDE 166
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-07
Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 46/187 (24%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRI 917
P ++ L ++ G AL+G SG+GK+T+ D+ G I +
Sbjct: 352 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH---------ILM 402
Query: 918 SGYPKKQETFA---RISGYCEQ-----NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKM 969
G+ ++ T A Q ND TV ++ Y+ E S +
Sbjct: 403 DGHDLREYTLASLRNQVALVSQNVHLFND------TVANNIAYAR-----TEEYSREQ-- 449
Query: 970 FIEE------VMELVELKPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1022
IEE M+ + +++G GV LS QR+R+ IA L+ + I+ +DE
Sbjct: 450 -IEEAARMAYAMDFINKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEA 507
Query: 1023 TSGLDAR 1029
TS LD
Sbjct: 508 TSALDTE 514
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 44/217 (20%), Positives = 72/217 (33%), Gaps = 71/217 (32%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISGYPKK- 923
L G++ PG +TAL+G +G+GK+T+ G+ + + G P
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPLVQ 85
Query: 924 --------------QET--FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETR 967
QE F R + E++ Y +
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFGR---------------SFRENIAYGL-----TRTPTM-- 123
Query: 968 KMFIEEVME----------LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSII 1017
EE+ + + VG G LS QR+ + +A L+ P ++
Sbjct: 124 ----EEITAVAMESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLL 178
Query: 1018 FMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIH 1053
+D TS LDA V R + + RTV+
Sbjct: 179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 5e-05
Identities = 57/280 (20%), Positives = 96/280 (34%), Gaps = 102/280 (36%)
Query: 161 TKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL-DPSLKVSGRVTYNGHNM 219
++ +L+ ++ + PG++T L+GP SGK+T + AL L P G+V +G +
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST-VAALLQNLYQP---TGGKVLLDGEPL 83
Query: 220 DEFVPE---RTAAYISQHDNHIGE-----MTVRETLAFAARCQGVGTRYEMLTELSRREK 271
++ A + Q E + RE +A+
Sbjct: 84 VQYDHHYLHTQVAAVGQ------EPLLFGRSFRENIAY---------------------- 115
Query: 272 AAGIKPDPDIDVFMKAASTEGEEANV---ITD----YYLKVLGLDICADTMVGDEMRRGV 324
G+ P ++ A E+ I+ Y DT VG+ G
Sbjct: 116 --GLTRTPTMEEITAVA----MESGAHDFISGFPQGY-----------DTEVGE---TGN 155
Query: 325 --SGGQKKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCFKQNIHIN 373
SGGQ++ V ALA L +D ++ LD+ V
Sbjct: 156 QLSGGQRQAV---------ALARALIRKPRLLILDNATSALDAGNQ-LRVQRLLYESPEW 205
Query: 374 SG--TAVI----SLLQPAPETYNLFDDIILLSDGQIVYQG 407
+ +I SL + A I+ L +G + QG
Sbjct: 206 ASRTVLLITQQLSLAERA-------HHILFLKEGSVCEQG 238
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 58/220 (26%), Positives = 90/220 (40%), Gaps = 42/220 (19%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISGYPKKQ 924
L G+S + G AL+G SG GK+T++ D +AG + + G KQ
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEIKQ 1099
Query: 925 ETFARISGYCEQNDIHS--PFV---TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE 979
+ Q I S P + ++ E++ Y V S I +
Sbjct: 1100 ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYG----DNSRVVSYEE---IVRAAKEAN 1149
Query: 980 LKPLRQSL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
+ SL VG G LS Q++R+ IA LV P I+ +DE TS LD +
Sbjct: 1150 IHQFIDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 1033 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+V + + GRT + H+ S I A D + +++ G
Sbjct: 1209 VVQEAL-DKAREGRTCIVIAHRLST-IQNA-DLIVVIQNG 1245
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 7e-07
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + GR
Sbjct: 519 LVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGR 576
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRG 1072
T + H+ S + A D + G
Sbjct: 577 TTIVIAHRLST-VRNA-DVIAGFDGG 600
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 4e-07
Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 47/187 (25%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRI 917
++K L + VS + G AL+G SG+GK+T+ DV +G I +
Sbjct: 353 GKEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS---------ICL 402
Query: 918 SGYPKKQETFA---RISGYCEQ-----NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKM 969
G+ + R Q ND T+ ++ Y+A E E
Sbjct: 403 DGHDVRDYKLTNLRRHFALVSQNVHLFND------TIANNIAYAA----EGEYTREQ--- 449
Query: 970 FIEE------VMELVELKPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1022
IE+ ME +E P +++G G + LS QR+R+ IA L+ + ++ +DE
Sbjct: 450 -IEQAARQAHAMEFIENMPQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEA 507
Query: 1023 TSGLDAR 1029
TS LD
Sbjct: 508 TSALDTE 514
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 3e-04
Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 48/174 (27%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
L VS + G+ L+G SGK+T+ D SG + +GH++ ++
Sbjct: 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTN 414
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
R A +SQ + H+ T+ +A+ + + +
Sbjct: 415 LRRHFALVSQ-NVHLFNDTIANNIAY------------------------AAEGEYTREQ 449
Query: 284 FMKAASTEGEEANVITDYYLKVL--GLDICADTMVGDEMRRGV--SGGQKKRVT 333
+AA +A+ +++ + GL DT++G+ G SGGQ++RV
Sbjct: 450 IEQAA----RQAHA--MEFIENMPQGL----DTVIGE---NGTSLSGGQRQRVA 490
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 5e-07
Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 26/167 (15%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
LN VS G + ++G SGAGK+TL+ + R T G + ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 929 RIS-GYCEQ--NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
R G Q N + S TV+ ++ P E+++ + V EL+ L
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVAL------PLELDNTPKDEVKRRVTELLSL----- 150
Query: 986 SLVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
VGL + LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 151 --VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 59/312 (18%), Positives = 100/312 (32%), Gaps = 89/312 (28%)
Query: 159 PSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218
+ + L +VS V G++ ++G +GK+TL+ + P+ G V +G
Sbjct: 35 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 91
Query: 219 MDEFVPERTAAY------ISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKA 272
+ I QH N + TV +A + +
Sbjct: 92 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-------EVKRRV 144
Query: 273 AGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRV 332
+ L ++GL D+ + +SGGQK+RV
Sbjct: 145 TEL---------------------------LSLVGLGDKHDSYPSN-----LSGGQKQRV 172
Query: 333 TTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGT----------- 376
+ ALA L D+ ++ LD +TT I+ K IN
Sbjct: 173 A-----IARALASNPKVLLCDQATSALDPATTRSILELLKD---INRRLGLTILLITHEM 224
Query: 377 AVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
V+ + D + ++S+G+++ Q V E F PK F+Q
Sbjct: 225 DVVK---------RICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKFIQST 267
Query: 437 TSKKDQEQYWAH 448
E Y
Sbjct: 268 LHLDIPEDYQER 279
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 6e-07
Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 25/168 (14%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
LN +S + PG + ++G SG GKTTL+ LAG + G I+ I
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 929 RISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
R GY Q P +TVY ++ Y L ++ R + + ++EL
Sbjct: 80 RRLGYLVQE--GVLFPHLTVYRNIAYG--LGNGKGRTAQER----QRIEAMLEL------ 125
Query: 987 LVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
G+ + G LS Q++R +A L +P +I +DEP S LD +
Sbjct: 126 -TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 20/103 (19%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE---F 222
+L D+S + PG + ++G GKTTLL LAG P SG ++ +G +
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTN 74
Query: 223 VP--ERTAAYISQ------HDNHIGEMTVRETLAFAARCQGVG 257
+P ER Y+ Q H +TV +A+
Sbjct: 75 LPVRERRLGYLVQEGVLFPH------LTVYRNIAYGLGNGKGR 111
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 54/269 (20%), Positives = 99/269 (36%), Gaps = 98/269 (36%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
+LKD++ ++ G+L + G +GKT+LL+ + G+L+ G++ ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 99
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP---DPDIDV 283
++ SQ ++ I T++E + +G Y+ R IK + DI
Sbjct: 100 RISFCSQ-NSWIMPGTIKENI--------IGVSYDE----YRYRSV--IKACQLEEDISK 144
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTGEMMVGP 341
F E + ++G+ G+ SGGQ+ R+
Sbjct: 145 F-----AEKDN-------------------IVLGE---GGITLSGGQRARI--------- 168
Query: 342 ALA----------LFMDEISTGLDSSTTFQIV-NCFKQNIHINSGTAVI------SLLQP 384
+LA L LD T +I +C + + + I L+
Sbjct: 169 SLARAVYKDADLYLLDSPFG-YLDVLTEKEIFESCVCKLM---ANKTRILVTSKMEHLKK 224
Query: 385 APETYNLFDDIILLSDGQIVYQGP-RELV 412
A D I++L +G + G EL
Sbjct: 225 A-------DKILILHEGSSYFYGTFSELQ 246
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 41/221 (18%), Positives = 85/221 (38%), Gaps = 60/221 (27%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L ++ G L A+ G +GAGKT+L+ ++ G + G I+ SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 930 ISGYCEQNDIHSPFV---TV--------YESLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
IS +C Q + ++ T+ Y+ Y V++
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSYDEYRY-------------------RSVIKAC 136
Query: 979 ELKP-LR------QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1031
+L+ + ++G G+ LS QR R+++A + + + +D P LD
Sbjct: 137 QLEEDISKFAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 195
Query: 1032 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ + + +T + + ++ + D++ ++ G
Sbjct: 196 KEIFESCVCKLMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 1e-06
Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 30/167 (17%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
L+ +S G ++G +GAGKT ++++AG G I ++ ++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEE-VMELVELKPLRQSL 987
+ QN P + V ++L + +R+ +K+ + V++
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFG--MRM--------KKIKDPKRVLDTARD------- 114
Query: 988 VGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
+ + + LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 16/98 (16%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
L ++S V+ G ++LGP +GKT L +AG P SGR+ +G ++ + PE
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPE 70
Query: 226 -RTAAYISQ------HDNHIGEMTVRETLAFAARCQGV 256
A++ Q H M V++ L F R + +
Sbjct: 71 KHDIAFVYQNYSLFPH------MNVKKNLEFGMRMKKI 102
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 996 LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
LS +R L +A L S++ +DEPT LD ++ + + V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 1050 CTIHQPSIDIFEAFDELF-LMKRGG 1073
H ++ +A D + + G
Sbjct: 309 LVSHDE--ELKDAADHVIRISLENG 331
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 34/183 (18%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GDIRISGY----- 920
LN ++ + G AL+G SG+GK+TL+ +AG T G I
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTEL 70
Query: 921 -PKKQET---FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVME 976
PK + F QN P +TVY+++ + LR P + + + EV +
Sbjct: 71 PPKDRNVGLVF--------QNWALYPHMTVYKNIAFPLELRKAPREEIDKK---VREVAK 119
Query: 977 LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIV 1034
++ + L L P LS Q++R+ IA LV P ++ +DEP S LDA R
Sbjct: 120 MLHIDKL---LNRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE--- 171
Query: 1035 MRT 1037
+R
Sbjct: 172 VRA 174
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 6e-05
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 34/163 (20%)
Query: 887 LMGVSGAGKTTLMDVLAGRKTGGYIT-GDIRISGY------PKKQE---TFARISGYCEQ 936
L+G SG GKTT + ++AG + T G I PK + F Q
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKDRNISMVF--------Q 90
Query: 937 NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996
+ P +TVYE++ + ++ P+ + R + EL++++ L L P L
Sbjct: 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKR---VRWAAELLQIEEL---LNRYPA--QL 142
Query: 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1037
S QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 7e-05
Identities = 54/188 (28%), Positives = 79/188 (42%), Gaps = 44/188 (23%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GDIRISGY----- 920
K+ ++GVS + G AL+G SG GKTT + +LAG T G+I
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDI 70
Query: 921 -PKKQET---FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVME 976
PK +E F QN P +TV+E++ + R + E R + E+
Sbjct: 71 PPKYREVGMVF--------QNYALYPHMTVFENIAFPLRARRISKDEVEKR---VVEIAR 119
Query: 977 LVELKPL-----RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--R 1029
+ + L Q LS Q++R+ +A LV P ++ DEP S LDA R
Sbjct: 120 KLLIDNLLDRKPTQ----------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLR 169
Query: 1030 AAAIVMRT 1037
MR
Sbjct: 170 MI---MRA 174
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 44/202 (21%), Positives = 88/202 (43%), Gaps = 32/202 (15%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L GVS R G + +++G SG+GK+T + + + + G I + + + ++ +
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81
Query: 930 ISGYCEQNDIHS------------PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMEL 977
++ + + + +TV E++ + P +V ++ E ++
Sbjct: 82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-----PIQVLGLSKHDARERALKY 136
Query: 978 VELKPLRQSLVGLPG-VNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1031
+ VG+ G LS Q++R++IA L P ++ DEPTS LD
Sbjct: 137 LAK-------VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 189
Query: 1032 AIVMRTVRNTVDTGRTVVCTIH 1053
V+R ++ + G+T+V H
Sbjct: 190 GEVLRIMQQLAEEGKTMVVVTH 211
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 49/164 (29%), Positives = 70/164 (42%), Gaps = 30/164 (18%)
Query: 887 LMGVSGAGKTTLMDVLAGRKTGGYIT-GDIRISGYPKKQETFARISGYCE---------- 935
L+G SG GKTT + ++AG + + G I I K +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGD---KLVADPEKGIFVPPKDRDIAMVF 87
Query: 936 QNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG 995
Q+ P +TVY+++ + LR P + R + EV EL+ L L L P
Sbjct: 88 QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLTEL---LNRKPR--E 139
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1037
LS QR+R+ + +V P + MDEP S LDA R MR
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-04
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
+ VG GV LS Q++RL+IA + NP I+ +DE TS LD
Sbjct: 468 DTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1061
RL +++ L S++ +DEPT LD ++ + + V+ H ++ +
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 1062 AFDELFLM-----KRGGREV 1076
A D + + V
Sbjct: 128 AADHVIRISLENGSSKVEVV 147
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 20/190 (10%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGD-IRISGYPKKQETFA 928
L G++ R G + ++G SG+GK+T + L G I D I +
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 99
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
G Q P +TV ++ + P +V R+ + MEL++ V
Sbjct: 100 EEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDK-------V 147
Query: 989 GLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
GL + LS Q +R+ IA L P I+ DEPTS LD V+ ++ +
Sbjct: 148 GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207
Query: 1044 TGRTVVCTIH 1053
G T+V H
Sbjct: 208 EGMTMVVVTH 217
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1441 | ||||
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-28 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-17 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 5e-21 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-24 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-27 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 7e-27 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-22 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-25 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 6e-21 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-16 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-25 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-23 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-24 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 4e-24 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-19 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 7e-24 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-17 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-23 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-18 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-22 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-19 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-21 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-20 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-20 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 9e-18 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-20 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 8e-20 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-18 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-18 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-16 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 7e-14 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.003 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 1e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 2e-04 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 4e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 5e-04 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.001 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 0.004 |
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 113 bits (285), Expect = 1e-28
Identities = 47/214 (21%), Positives = 82/214 (38%), Gaps = 18/214 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
+ G+ G + L+G +GAGKTT + +AG R G I + +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
+ P +TVYE+L A+ R E ++ LK + L G
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKE---GIKRDLEWIFSLFPRLKERLKQLGG 138
Query: 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
LS +++ L I L++ P ++ MDEP+ GL + V ++ G T++
Sbjct: 139 -----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 1050 CTIHQPSIDIFEAF---DELFLMKRGGREVYVGP 1080
+ A ++++ G+ V G
Sbjct: 194 LVEQ----NALGALKVAHYGYVLET-GQIVLEGK 222
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 81.1 bits (200), Expect = 2e-17
Identities = 45/251 (17%), Positives = 84/251 (33%), Gaps = 42/251 (16%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS-LKVSGRVTYNGHNMDEFV 223
+ +K + V G++ L+G +GKTT L A+AG + K+ + +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
A + + E+TV E L A +
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRK---------------------------- 110
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
+ + + L + G +SGG+++ + G ++
Sbjct: 111 ------DKEGIKRDLEWIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403
L MDE S GL ++ ++ GT ++ + Q A + +L GQI
Sbjct: 160 LLMMDEPSLGLAPILVSEVFEVIQK--INQEGTTILLVEQNALGALKVAHYGYVLETGQI 217
Query: 404 VYQGPRELVLE 414
V +G +L+
Sbjct: 218 VLEGKASELLD 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 113 bits (283), Expect = 2e-28
Identities = 54/218 (24%), Positives = 102/218 (46%), Gaps = 16/218 (7%)
Query: 863 GVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISG 919
+ E+ + L V+ + G ++MG SG+GK+T+++++ + T G + +I+ +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 920 YPKKQETFARIS--GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMEL 977
+ T R G+ Q P +T E++ + ++ E R+ E +++
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 978 VELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1037
EL+ + N LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AELEERFANHK----PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187
Query: 1038 VRNTVD-TGRTVVCTIHQPSIDIFEA--FDELFLMKRG 1072
++ + G+TVV H DI A + + +K G
Sbjct: 188 LKKLNEEDGKTVVVVTH----DINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 91.4 bits (227), Expect = 5e-21
Identities = 45/257 (17%), Positives = 92/257 (35%), Gaps = 47/257 (18%)
Query: 159 PSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218
++ + LK+V+ +K G ++GP SGK+T+L + P+ G V +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIK 68
Query: 219 MDEFVPERTA-------AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREK 271
++ + ++ Q N I +T E + + G ++ RR++
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA----MSGEERRKR 124
Query: 272 AAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKR 331
A + + A+ +SGGQ++R
Sbjct: 125 AL--------------------------ECLKMAELEERFANHKPNQ-----LSGGQQQR 153
Query: 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL 391
V + + D+ + LDS T +I+ K+ ++ G V+ ++
Sbjct: 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARF 211
Query: 392 FDDIILLSDGQIVYQGP 408
+ II L DG++ +
Sbjct: 212 GERIIYLKDGEVEREEK 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 113 bits (284), Expect = 2e-28
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 19/221 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L+GVS + G +T ++G +G+GK+TL++V+ G + G + + + + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMF----------IEEVMELVE 979
Q +TV E+L +NS K + +++E ++
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 980 LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
L L G LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 194
Query: 1040 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
G T + H+ + D L++M G+ + G
Sbjct: 195 ELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGR 233
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 100 bits (251), Expect = 4e-24
Identities = 57/254 (22%), Positives = 89/254 (35%), Gaps = 35/254 (13%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
L VS V G +TL++GP SGK+TL+ + G L GRV + ++ P
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 73
Query: 225 E----RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
Q + EMTV E L C G + + ++
Sbjct: 74 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE--------- 124
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
EE L+ L L D G+ +SGGQ K V G ++
Sbjct: 125 ------------EEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMT 167
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400
+ MDE G+ I N + G + + N D + ++ +
Sbjct: 168 NPKMIVMDEPIAGVAPGLAHDIFNHVLE--LKAKGITFLIIEHRLDIVLNYIDHLYVMFN 225
Query: 401 GQIVYQGPRELVLE 414
GQI+ +G E ++
Sbjct: 226 GQIIAEGRGEEEIK 239
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 110 bits (277), Expect = 2e-27
Identities = 54/270 (20%), Positives = 98/270 (36%), Gaps = 52/270 (19%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
T + ++ +K G +LLGP GKTT L +AG +P+ GR+ + ++ P
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPP 75
Query: 225 -ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
+R + + Q MTV E +AF + +
Sbjct: 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP-------------------------- 109
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
+E + + ++L ++ + +SGGQ++RV +V
Sbjct: 110 --------KDEIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPD 156
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403
L MDE + LD+ + K+ + I + E + D I +++ GQ+
Sbjct: 157 VLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
Query: 404 VYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ G E + P VA F+
Sbjct: 216 LQIGSPT---EVYLR-----PNSVFVATFI 237
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 108 bits (272), Expect = 7e-27
Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 24/221 (10%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQ 924
+N ++ + G L+G SG GKTT + ++AG T G I
Sbjct: 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTY 72
Query: 925 -ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
R Q+ P +TVYE++ + ++ + + + EL++++ L
Sbjct: 73 LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEEL 129
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1042
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 130 LNRYPA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 1043 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGREVYVGP 1080
T + H D EA D + +M R G+ + +G
Sbjct: 185 KLKVTTIYVTH----DQVEAMTMGDRIAVMNR-GQLLQIGS 220
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 104 bits (260), Expect = 2e-25
Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 14/216 (6%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQ 924
K +L G+S G + L+G +GAGKTT + +++ + + G +T + ++
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 925 ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
++ Y + + E L + A +S + +E E+ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKI 127
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
+ V S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1045 GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
G T++ + H ++ D + L+ G V G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 94.3 bits (234), Expect = 6e-22
Identities = 57/276 (20%), Positives = 94/276 (34%), Gaps = 56/276 (20%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
ILK +S ++ G + L+GP +GKTT L ++ + PS SG VT G N+ E
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 71
Query: 225 E--RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
E + +Y+ + M E L F A
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS-------------------------- 105
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
E + + ++ GL V S G +++ ++
Sbjct: 106 --------SSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNP 152
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
+DE ++GLD ++ KQ G ++ E L D I L+ +G
Sbjct: 153 RLAILDEPTSGLDVLNAREVRKILKQ--ASQEGLTILVSSHNMLEVEFLCDRIALIHNGT 210
Query: 403 IVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEVT 437
IV G EL + K + + + +EV
Sbjct: 211 IVETGTVEEL---------KERYKAQNIEEVFEEVV 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 103 bits (259), Expect = 4e-25
Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 28/226 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
L GVS R G + +++G SG+GK+T + + + + G I I+ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 929 RIS-----------GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMEL 977
Q+ +TV E++ A +++ + R+ + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGLSKHDARER-ALKYLAK 135
Query: 978 VELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1037
V + Q LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 VGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 1038 VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGREVYVGP 1080
++ + G+T+V H ++ A + + G+ G
Sbjct: 192 MQQLAEEGKTMVVVTH----EMGFARHVSSHVIFL-HQGKIEEEGD 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 91.8 bits (228), Expect = 6e-21
Identities = 57/286 (19%), Positives = 101/286 (35%), Gaps = 66/286 (23%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
+LK VS + G + ++G SGK+T L + PS G + NG N++
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRD 71
Query: 225 E----------------RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSR 268
+ + QH N MTV E + A + L++
Sbjct: 72 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI------QVLGLSKHDA 125
Query: 269 REKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328
RE+A YL +G+D A + +SGGQ
Sbjct: 126 RERA---------------------------LKYLAKVGIDERAQ----GKYPVHLSGGQ 154
Query: 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPET 388
++RV+ + L DE ++ LD +++ +Q G ++ +
Sbjct: 155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ--LAEEGKTMVVVTHEMGFA 212
Query: 389 YNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQ 434
++ +I L G+I +G E + F + P+ + FL+
Sbjct: 213 RHVSSHVIFLHQGKIEEEGDPE---QVFGN-----PQSPRLQQFLK 250
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 101 bits (254), Expect = 6e-25
Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 17/192 (8%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQET 926
DK VL ++ G + G +G GKTTL+ ++ + G+I +G P +
Sbjct: 13 DKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK-- 67
Query: 927 FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
+ + I ++V + L A L K I + +E VE+ L++
Sbjct: 68 VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK 122
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1045
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 123 ------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 176
Query: 1046 RTVVCTIHQPSI 1057
++ + + S
Sbjct: 177 IVIISSREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 77.3 bits (190), Expect = 2e-16
Identities = 33/215 (15%), Positives = 72/215 (33%), Gaps = 48/215 (22%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+L+ ++ ++ G + GP GKTTLL ++ L P G + YNG + + +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--K 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
++ + +++V + L A GV + +
Sbjct: 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------------- 110
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALAL 345
L+ + + + +S G +RV ++ A
Sbjct: 111 -----------------LESVEVLDLKKKL------GELSQGTIRRVQLASTLLVNAEIY 147
Query: 346 FMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVIS 380
+D+ +D + +++ + I G +IS
Sbjct: 148 VLDDPVVAIDEDSKHKVLKSILE-ILKEKGIVIIS 181
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 103 bits (257), Expect = 6e-25
Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 15/223 (6%)
Query: 863 GVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISG 919
+ LN VS G + ++G SGAGK+TL+ + R T G + ++
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT 71
Query: 920 YPKKQETFARIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
+ + T AR G Q+ TV+ ++ L + K + E++ LV
Sbjct: 72 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLV 128
Query: 979 ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
L S LS Q++R+ IA L +NP ++ DE TS LD ++ +
Sbjct: 129 GLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183
Query: 1039 RNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
++ G T++ H+ + + D + ++ G +
Sbjct: 184 KDINRRLGLTILLITHEMDV-VKRICDCVAVI-SNGELIEQDT 224
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 98.0 bits (244), Expect = 3e-23
Identities = 52/280 (18%), Positives = 93/280 (33%), Gaps = 57/280 (20%)
Query: 159 PSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218
+ + L +VS V G++ ++G +GK+TL+ + P+ G V +G
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 68
Query: 219 MDEFVPERTA------AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKA 272
+ I QH N + TV +A + +
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-------EVKRRV 121
Query: 273 AGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRV 332
L ++GL D+ + +SGGQK+RV
Sbjct: 122 ---------------------------TELLSLVGLGDKHDSYPSN-----LSGGQKQRV 149
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLF 392
+ L DE ++ LD +TT I+ K I+ G ++ + +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKD-INRRLGLTILLITHEMDVVKRIC 208
Query: 393 DDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADF 432
D + ++S+G+++ Q E F PK F
Sbjct: 209 DCVAVISNGELIEQDTVS---EVFSH-----PKTPLAQKF 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 102 bits (255), Expect = 3e-24
Identities = 35/203 (17%), Positives = 78/203 (38%), Gaps = 23/203 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L ++ G + A+ G +G+GKT+L+ ++ G + G I R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV------------ 99
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
+C Q P T+ E++ + E ++ + ++ + +++G
Sbjct: 100 --SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG 153
Query: 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 154 -EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 212
Query: 1050 CTIHQPSIDIFEAFDELFLMKRG 1072
+ D++ ++ +G
Sbjct: 213 LVTSKME--HLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 95.8 bits (238), Expect = 4e-22
Identities = 52/293 (17%), Positives = 103/293 (35%), Gaps = 69/293 (23%)
Query: 136 ALPSFTKFFTTIFEDLL------NYLHILPSTKKHLT----------ILKDVSGIVKPGR 179
+ + T F+ F +LL N S + +++ +LK+++ ++ G
Sbjct: 4 IMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGE 63
Query: 180 LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIG 239
+ + G SGKT+LL+ + G+L+ S G + ++G ++ SQ + I
Sbjct: 64 MLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR----------VSFCSQ-FSWIM 109
Query: 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVIT 299
T++E + F KA ++
Sbjct: 110 PGTIKENIIFGVSYDEY--------RYKSVVKACQLQ----------------------- 138
Query: 300 DYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 359
+ +T++G+ +SGGQ+ R++ + A +D LD T
Sbjct: 139 ---QDITKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE 194
Query: 360 FQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PREL 411
Q+ + N +++ E D I++L G + G EL
Sbjct: 195 EQVFESCVCKLMANKTRILVTS---KMEHLRKADKILILHQGSSYFYGTFSEL 244
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 100 bits (251), Expect = 4e-24
Identities = 44/212 (20%), Positives = 84/212 (39%), Gaps = 13/212 (6%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924
P ++ L ++ G AL+G SG+GK+T+ ++ G I + G+ ++
Sbjct: 24 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLRE 81
Query: 925 ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
+ QN + ++ R + M+ +
Sbjct: 82 YTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR---MAYAMDFINKM 138
Query: 982 PLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
+++G GV LS QR+R+ IA L+ + I+ +DE TS LD + + +
Sbjct: 139 DNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 197
Query: 1041 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ RT + H+ S E DE+ +++ G
Sbjct: 198 -LQKNRTSLVIAHRLS--TIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 87.2 bits (216), Expect = 2e-19
Identities = 46/251 (18%), Positives = 96/251 (38%), Gaps = 42/251 (16%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
L++++ + G+ L+G SGK+T+ + D G + +GH++ E+
Sbjct: 29 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLA 85
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
R + + H+ TV +A+A T ++ + A
Sbjct: 86 SLRNQVALVSQNVHLFNDTVANNIAYA------RTEEYSREQIEEAARMAYAMDF----- 134
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
+ +D DT++G E +SGGQ++R+ ++ +
Sbjct: 135 ---------------------INKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDSP 172
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403
L +DE ++ LD+ + I + + + ++ T D+I+++ DG I
Sbjct: 173 ILILDEATSALDTESERAIQAALDE---LQKNRTSL-VIAHRLSTIEQADEIVVVEDGII 228
Query: 404 VYQGPRELVLE 414
V +G +L
Sbjct: 229 VERGTHSELLA 239
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 99.6 bits (248), Expect = 7e-24
Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 30/232 (12%)
Query: 859 MKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRIS 918
M+LQ V E L +SG R G + L+G +GAGK+TL+ +AG +G G I+ +
Sbjct: 4 MQLQDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 58
Query: 919 GYP---KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVM 975
G P A Y Q V+ L + +TR + +V
Sbjct: 59 GQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ--------HDKTRTELLNDVA 110
Query: 976 ELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDA 1028
+ L LS + +R+ +A ++ ++ +DEP + LD
Sbjct: 111 GALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 1029 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
+ + + + G +V + H + +L+K GG+ + G
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGR 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 81.1 bits (200), Expect = 1e-17
Identities = 49/259 (18%), Positives = 81/259 (31%), Gaps = 60/259 (23%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T L +SG V+ G + L+GP +GK+TLL +AG + G + + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG---KGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
+ A AY+SQ V L
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQH------------------------------ 98
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
+ + + L LD +SGG+ +RV +++
Sbjct: 99 ---------DKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 144
Query: 343 LA-------LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395
L +DE LD + + G A++ T
Sbjct: 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRA 202
Query: 396 ILLSDGQIVYQGPRELVLE 414
LL G+++ G RE VL
Sbjct: 203 WLLKGGKMLASGRREEVLT 221
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 99.5 bits (248), Expect = 1e-23
Identities = 53/250 (21%), Positives = 95/250 (38%), Gaps = 43/250 (17%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
ILKD++ ++ G +G GK+TL+ + D + SG++ +GHN+ +F+
Sbjct: 33 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGS 89
Query: 227 TAAYIS--QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
I Q DN + TV+E + G E+ K A
Sbjct: 90 LRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF------ 136
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA 344
++ L DT VG E +SGGQK+R++ + +
Sbjct: 137 --------------------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPI 175
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404
L +DE ++ LD + I ++ + ++ T D I+++ +G IV
Sbjct: 176 LILDEATSALDLESESIIQEALDV---LSKDRTTL-IVAHRLSTITHADKIVVIENGHIV 231
Query: 405 YQGPRELVLE 414
G ++
Sbjct: 232 ETGTHRELIA 241
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 96.0 bits (239), Expect = 2e-22
Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 25/225 (11%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924
+++ +L ++ + G A +G+SG GK+TL++++ +G I I G+ K
Sbjct: 27 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKD 84
Query: 925 ETFARISGYCE--QNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
+ Q D TV E++ L ++ + E ++
Sbjct: 85 FLTGSLRNQIGLVQQDNILFSDTVKENI------LLGRPTATDEE---VVEAAKMANAHD 135
Query: 983 LRQSL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
+L VG GV LS Q++RL+IA + NP I+ +DE TS LD + +I+
Sbjct: 136 FIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 194
Query: 1036 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
+ + RT + H+ S D++ +++ G V G
Sbjct: 195 EALDV-LSKDRTTLIVAHRLS--TITHADKIVVIE-NGHIVETGT 235
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 96.1 bits (239), Expect = 1e-22
Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 13/219 (5%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP--- 921
D V+L+ ++ + + G + ++G SG+GK+TL ++ + I G+
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--VLIDGHDLAL 69
Query: 922 KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
R G Q D ++ +++ + +V + + + +
Sbjct: 70 ADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAK---LAGAHDFISEL 125
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
+ + GLS QR+R+ IA LV NP I+ DE TS LD + ++MR +
Sbjct: 126 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK- 184
Query: 1042 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
+ GRTV+ H+ S + D + +M+ G+ V G
Sbjct: 185 ICKGRTVIIIAHRLS--TVKNADRIIVME-KGKIVEQGK 220
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 83.8 bits (207), Expect = 3e-18
Identities = 53/251 (21%), Positives = 94/251 (37%), Gaps = 45/251 (17%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
IL +++ +K G + ++G SGK+TL + P +G+V +GH++ P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNW 74
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
R + Q DN + ++ + ++ A V ++ K AG
Sbjct: 75 LRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSV-------EKVIYAAKLAGA-------- 118
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
+ + E G+SGGQ++R+ +V
Sbjct: 119 -------------------HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403
L DE ++ LD + I+ + I G VI + T D II++ G+I
Sbjct: 160 ILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAH-RLSTVKNADRIIVMEKGKI 215
Query: 404 VYQGPRELVLE 414
V QG + +L
Sbjct: 216 VEQGKHKELLS 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 94.6 bits (235), Expect = 4e-22
Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 20/219 (9%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQET 926
++V+ ++ G +G SG GK+TL+ ++AG +T +GD+ I
Sbjct: 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTP 68
Query: 927 FARIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
A G Q+ P ++V E++ + L + E + +V E+++L L
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK---EVINQRVNQVAEVLQLAHLLD 125
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1044
LS QR+R+ I LVA PS+ +DEP S LDA + +
Sbjct: 126 RKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180
Query: 1045 GRTVVCTIHQPSIDIFEAF---DELFLMKRGGREVYVGP 1080
GRT++ H D EA D++ ++ GR VG
Sbjct: 181 GRTMIYVTH----DQVEAMTLADKIVVL-DAGRVAQVGK 214
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 87.3 bits (216), Expect = 1e-19
Identities = 55/271 (20%), Positives = 96/271 (35%), Gaps = 52/271 (19%)
Query: 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV 223
+ + KD++ + G + +GP GK+TLL +AG + SG + M++
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 224 PERTA-AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
P + Q ++V E ++F + G
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAG--------------------------- 101
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
+ E N + +VL L D +SGGQ++RV G +V
Sbjct: 102 -------AKKEVINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
+DE + LD++ Q+ +H G +I + E L D I++L G+
Sbjct: 150 SVFLLDEPLSNLDAALRVQMRIEI-SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 208
Query: 403 IVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ G E + P + VA F+
Sbjct: 209 VAQVGKPL---ELYHY-----PADRFVAGFI 231
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.0 bits (231), Expect = 2e-21
Identities = 48/257 (18%), Positives = 105/257 (40%), Gaps = 42/257 (16%)
Query: 161 TKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMD 220
+ + +L+ ++ ++PG +T L+GP SGK+T+ L P+ G++ +G +
Sbjct: 23 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLP 79
Query: 221 EFVPE---RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP 277
++ R A + Q + + +++E +A+ G+
Sbjct: 80 QYEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY------------------------GLTQ 114
Query: 278 DPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM 337
P ++ E A V + + + GL DT V + + +SGGQ++ V
Sbjct: 115 KPTME--------EITAAAVKSGAHSFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARA 165
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397
++ L +D+ ++ LD+++ Q+ ++ S + ++ D I+
Sbjct: 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILF 223
Query: 398 LSDGQIVYQGPRELVLE 414
L G I G + ++E
Sbjct: 224 LEGGAIREGGTHQQLME 240
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.3 bits (224), Expect = 2e-20
Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 14/214 (6%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
L G++ RPG +TAL+G +G+GK+T+ +L + TGG + + Y +
Sbjct: 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY--LH 87
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-RQSL 987
R Q ++ E++ Y + E + + P +
Sbjct: 88 RQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVK--SGAHSFISGLPQGYDTE 144
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1046
V G LS QR+ + +A L+ P ++ +D+ TS LDA + V + + + + R
Sbjct: 145 VDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSR 203
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
+V+ S + E D + ++ GG G
Sbjct: 204 SVLLITQHLS--LVEQADHILFLE-GGAIREGGT 234
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 89.2 bits (221), Expect = 3e-20
Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 22/223 (9%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQ 924
++ + +S + G L+G SG GKTT + ++AG + G I ++ P+K
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 925 ETFARIS---GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
Q+ P +TVY+++ + LR +V + + EV EL+ L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLT 130
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
L LS QR+R+ + +V P + MDEP S LDA+ + ++
Sbjct: 131 ELLNRKPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185
Query: 1042 V-DTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGREVYVGP 1080
G T + H D EA D + +M R G VG
Sbjct: 186 QRQLGVTTIYVTH----DQVEAMTMGDRIAVMNR-GVLQQVGS 223
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 82.3 bits (203), Expect = 9e-18
Identities = 54/277 (19%), Positives = 98/277 (35%), Gaps = 58/277 (20%)
Query: 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV 223
+T ++++S VK G +LLGP GKTT L +AG +PS G++ + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPE 71
Query: 224 PERTAA-------YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIK 276
+ Q MTV + +AF + + V + ++
Sbjct: 72 KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQ-------EIDQRV---- 120
Query: 277 PDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE 336
++LGL + + +SGGQ++RV G
Sbjct: 121 -----------------------REVAELLGLTELLNRKPRE-----LSGGQRQRVALGR 152
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396
+V MDE + LD+ ++ + + G I + E + D I
Sbjct: 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAEL-KKLQRQLGVTTIYVTHDQVEAMTMGDRIA 211
Query: 397 LLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+++ G + G + E ++ P VA F+
Sbjct: 212 VMNRGVLQQVGSPD---EVYDK-----PANTFVAGFI 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 89.2 bits (221), Expect = 3e-20
Identities = 47/211 (22%), Positives = 90/211 (42%), Gaps = 12/211 (5%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYP 921
+ + +L +S +P + A G SG GK+T+ +L + T G IT I
Sbjct: 12 DDSEQIL-RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNIS 70
Query: 922 KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
+ + G+ Q+ + ++ F +E + +
Sbjct: 71 LEN--WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQ 128
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
+ VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + +
Sbjct: 129 L--NTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS- 184
Query: 1042 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ GRT + H+ S D+++ +++G
Sbjct: 185 LMKGRTTLVIAHRLS--TIVDADKIYFIEKG 213
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 86.8 bits (215), Expect = 3e-19
Identities = 50/251 (19%), Positives = 84/251 (33%), Gaps = 42/251 (16%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
IL+D+S +P + GP GK+T+ L P+ +G +T +G +D E
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 226 RTAAYIS--QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
+ I D+ I T+RE L + + +L+ PD
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL--- 129
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
+T VG E +SGGQ++R+ +
Sbjct: 130 -----------------------------NTEVG-ERGVKISGGQRQRLAIARAFLRNPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403
L +DE + LDS + + + G + + T D I + GQI
Sbjct: 160 ILMLDEATASLDSESESMVQKALDS---LMKGRTTLVIAH-RLSTIVDADKIYFIEKGQI 215
Query: 404 VYQGPRELVLE 414
G ++
Sbjct: 216 TGSGKHNELVA 226
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 88.2 bits (218), Expect = 8e-20
Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 15/218 (6%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQE 925
K+V L+ V+ G ++G SGAGKTT M ++AG + G + D R+ K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 926 T--FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
R G Q P +T +E++ + + R +EEV +++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVAKILDIHHV 133
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1042
LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1043 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
G T++ H P+ DIF D + ++ G+ V VG
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVL-VKGKLVQVGK 224
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 85.1 bits (210), Expect = 1e-18
Identities = 47/278 (16%), Positives = 97/278 (34%), Gaps = 57/278 (20%)
Query: 162 KKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE 221
K + L +V+ ++ G +LGP +GKTT + +AG PS +G + ++ +
Sbjct: 15 KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVAS 71
Query: 222 FVPE------RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275
R + Q +T E +AF +++ R++
Sbjct: 72 NGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM-------KMSKEEIRKRV--- 121
Query: 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG 335
+ K+L + + R +SG Q++RV
Sbjct: 122 ------------------------EEVAKILDIHHVLNHFP-----RELSGAQQQRVALA 152
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395
+V L +DE + LD+ + + G ++ + + + + D +
Sbjct: 153 RALVKDPSLLLLDEPFSNLDARMR-DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRV 211
Query: 396 ILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+L G++V G E + +++ P VA +
Sbjct: 212 GVLVKGKLVQVGKPE---DLYDN-----PVSIQVASLI 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 84.7 bits (209), Expect = 1e-18
Identities = 57/267 (21%), Positives = 102/267 (38%), Gaps = 55/267 (20%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER- 226
L ++S V+ G ++LGP +GKT L +AG P SGR+ +G ++ + PE+
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
A++ Q+ + M V++ L F R + + ++
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKI----------KDPKRVLDT----------- 111
Query: 287 AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALF 346
+ L ++ D +SGG+++RV +V L
Sbjct: 112 ----------------ARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILL 150
Query: 347 MDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQ 406
+DE + LD T + +H + V+ + E + D I ++ DG+++
Sbjct: 151 LDEPLSALD-PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209
Query: 407 GPRELVLEFFESMGFKCPKRKGVADFL 433
G E E FE P VA F+
Sbjct: 210 GKPE---EIFEK-----PVEGRVASFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 76.3 bits (187), Expect = 7e-16
Identities = 44/211 (20%), Positives = 82/211 (38%), Gaps = 17/211 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG-YPKKQETFARI 930
L+ +S G ++G +GAGKT ++++AG I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 931 SGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGL 990
+ QN P + V ++L + ++ + + V++ + L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK---------KIKDPKRVLDTARDLKIEHLLDRN 124
Query: 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1049
P LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 P--LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 1050 CTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
H + + D + ++ G+ + VG
Sbjct: 183 HITHDQT-EARIMADRIAVV-MDGKLIQVGK 211
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 74.7 bits (183), Expect = 3e-15
Identities = 50/265 (18%), Positives = 92/265 (34%), Gaps = 56/265 (21%)
Query: 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTA- 228
+V +LLGP +GK+ L +AG + P G V NG ++ PER
Sbjct: 17 NVD-FEMGRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGI 72
Query: 229 AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAA 288
++ Q ++V +A+ R R + E+
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREM---------------------- 110
Query: 289 STEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMD 348
+ + D +SGG+++RV +V L +D
Sbjct: 111 -------------------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD 151
Query: 349 EISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 408
E + +D T ++ + + ++ + E L D++ ++ +G+IV +G
Sbjct: 152 EPLSAVDLKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210
Query: 409 RELVLEFFESMGFKCPKRKGVADFL 433
+ E F K VA+FL
Sbjct: 211 LK---ELFS------AKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 70.8 bits (173), Expect = 7e-14
Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 20/204 (9%)
Query: 881 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFARISGYCEQN 937
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 938 DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997
P ++VY ++ Y V R + E+ E + + L LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLS 128
Query: 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1056
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1057 IDIFEAFDELFLMKRGGREVYVGP 1080
+ DE+ +M GR V G
Sbjct: 189 -EAAMLADEVAVM-LNGRIVEKGK 210
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 50.8 bits (120), Expect = 2e-07
Identities = 22/198 (11%), Positives = 46/198 (23%), Gaps = 42/198 (21%)
Query: 886 ALMGVSGAGKTTLMDVLAG---RKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSP 942
+ G G GKTTL+ + ++ G+ T ++R K+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR------------------- 44
Query: 943 FVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002
+ + + + ++
Sbjct: 45 ------------TGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----QYFEELAIPIL 88
Query: 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1062
+I +DE + + D VV TI +
Sbjct: 89 ERAYREAKKDRRKVIIIDEIGKMEL-FSKKFRDLVRQIMHDPNVNVVATIPIRDVHPL-- 145
Query: 1063 FDELFLMKRGGREVYVGP 1080
E+ + G + + P
Sbjct: 146 VKEIRRLP-GAVLIELTP 162
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 43.4 bits (101), Expect = 5e-05
Identities = 13/105 (12%), Positives = 24/105 (22%), Gaps = 5/105 (4%)
Query: 182 LLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE--RTAAYISQHDNHIG 239
++ G P GKTTL+ + +L + E
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
+ V E+ + R K + +
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIII 105
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 43.9 bits (103), Expect = 1e-04
Identities = 32/148 (21%), Positives = 52/148 (35%), Gaps = 17/148 (11%)
Query: 79 QERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTV--EVRFEHLTIEAEAFLASKA 136
++++ + N KN+ + TV + R + L + E L ++
Sbjct: 41 IKKEQPSHYKYHEKHYANAAIFADSKNQKTICQQAVDTVLAKKRVDSLQLTREQMLTNRF 100
Query: 137 LPSFTK----FFTTIFEDLLNYLHILPSTKKHL--------TILKD-VSGIVKPGRLTLL 183
+ F +T D+ ++ + L LK V I K R L
Sbjct: 101 NDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCMVYNIPKK-RYWLF 159
Query: 184 LGPPSSGKTTLLLALAGKLD-PSLKVSG 210
GP SGKTTL AL +L V+
Sbjct: 160 KGPIDSGKTTLAAALLELCGGKALNVNL 187
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.6 bits (101), Expect = 2e-04
Identities = 21/152 (13%), Positives = 40/152 (26%), Gaps = 22/152 (14%)
Query: 936 QNDIHSPFVTVYESLF-----------YSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
+ + +Y L +A L + E + L K +
Sbjct: 272 FDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDME 331
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
G V L+ L A+ +DE + LD + +R +
Sbjct: 332 YLSGGEKTVAALA------LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP 385
Query: 1045 GRTVVCTIHQPSIDIFEAFDELF---LMKRGG 1073
+ + +FE D L ++
Sbjct: 386 DLQFIVISLKN--TMFEKSDALVGVYRQQQEN 415
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 4e-04
Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 7/186 (3%)
Query: 172 SGIVKPGRLTLLLGPPSSGKTTLLL--ALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAA 229
G ++ G +T + G +GKT + A+ +L F PER A
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 76
Query: 230 YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAAS 289
++ ++ A A + + + A + D ++ S
Sbjct: 77 VAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS 136
Query: 290 TEGEEANVITDY-----YLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA 344
GE + L L + ++ +++ V G + + G +A
Sbjct: 137 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 196
Query: 345 LFMDEI 350
Sbjct: 197 HASTTR 202
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 40.3 bits (93), Expect = 5e-04
Identities = 17/135 (12%), Positives = 33/135 (24%), Gaps = 3/135 (2%)
Query: 185 GPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244
+GKTTLL L L R H + ++ + T+
Sbjct: 9 AWSGTGKTTLLKKLIPALC---ARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIV 65
Query: 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLK 304
+ A E+ + ++ F + + +
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPE 125
Query: 305 VLGLDICADTMVGDE 319
L +D + D
Sbjct: 126 ELVIDRHVIAVASDV 140
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 40.0 bits (92), Expect = 0.001
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 20/97 (20%)
Query: 160 STKKHLTILKDVS-----------GIVKPGRLTLLLGPPSSGKTTLLLALAGKL------ 202
+T K + IL+ + +V G + L+ P +GK+ L L LA ++
Sbjct: 1 ATHKPINILEAFAAAPPPLDYVLPNMV-AGTVGALVSPGGAGKSMLALQLAAQIAGGPDL 59
Query: 203 -DPSLKVSGRVTYNGH-NMDEFVPERTAAYISQHDNH 237
+ +G V Y + + R A +
Sbjct: 60 LEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAE 96
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 38.4 bits (88), Expect = 0.004
Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 162 KKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE 221
+L L V+ LL G P SGKT+L A+ + ++ V + D
Sbjct: 16 NDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIV--------IDNDT 67
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRR 269
F + + + + ++ ++ + T + +
Sbjct: 68 FKQQH------PNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQG 109
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1441 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.82 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.75 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.48 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.35 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.29 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.2 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.08 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.94 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.85 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.76 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.5 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.36 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.98 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.88 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.81 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.74 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.71 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.69 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.62 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.59 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.52 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.23 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.13 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.09 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.06 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.01 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.94 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.94 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.93 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.83 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.82 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.82 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.81 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.77 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.77 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.77 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.77 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.73 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.73 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.73 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.72 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.72 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.7 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.68 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.67 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.66 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.63 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.63 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.63 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.58 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.56 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.52 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.49 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.48 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.48 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.47 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.46 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.44 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.39 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.35 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.33 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.32 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.31 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.29 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.24 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.24 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.22 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.21 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.21 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.2 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.17 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.16 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.16 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.14 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.12 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.11 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.11 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.09 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.07 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.06 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.05 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.05 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.04 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.04 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.03 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.02 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.0 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.99 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.99 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.96 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.93 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.89 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.89 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.87 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.87 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.85 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.85 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.84 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.83 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.83 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.83 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.83 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.82 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.81 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.8 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.78 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.78 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.77 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.72 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.71 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.71 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.71 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.71 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.7 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.7 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.69 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.69 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.69 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.68 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.68 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.67 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.66 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.64 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.63 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.62 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.6 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.58 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.57 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.55 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.52 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.5 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.47 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.45 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.45 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.45 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.42 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.42 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.41 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.41 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.4 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.37 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.35 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.32 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.29 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.29 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.28 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.25 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.25 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.24 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.24 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.23 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.23 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.22 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.22 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.21 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.2 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.15 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.12 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.11 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.08 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.03 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.98 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.98 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.97 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.97 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.9 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.87 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.83 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.78 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.76 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.75 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.74 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.73 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.72 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.71 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.68 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.67 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.64 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.64 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.62 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 94.61 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.59 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.58 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.57 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.56 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.52 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.49 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.47 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.45 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.42 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.39 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.37 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.34 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.3 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.28 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.26 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.25 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.23 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.22 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.2 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.2 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.18 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.18 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.17 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.16 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.14 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.13 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.13 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.13 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.12 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.1 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.09 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.08 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.07 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.07 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.05 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.99 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.98 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.98 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.97 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.97 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.94 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.93 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.93 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.91 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.91 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.88 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.87 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.84 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.83 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.83 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.82 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.81 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.81 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.77 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.71 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.71 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.68 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.59 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.55 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.55 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.53 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.51 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.5 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.48 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.43 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.4 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.38 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.38 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.37 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.3 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.29 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 93.28 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.27 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.26 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.25 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.25 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.24 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.23 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.15 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.14 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 93.1 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.07 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.04 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.03 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.02 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.01 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.0 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 93.0 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.98 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.97 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.96 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.95 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.89 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.88 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 92.87 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.87 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.87 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 92.87 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.85 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.82 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.77 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.77 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.75 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.72 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.65 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.59 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.56 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.52 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.51 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.5 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.47 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.43 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.39 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.37 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.31 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.3 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.3 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.26 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.23 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 92.21 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.2 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.12 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.11 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.11 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 92.07 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.04 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.04 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.02 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.99 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.96 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.93 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.92 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.86 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.81 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.73 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.73 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.7 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.63 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.62 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.59 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.56 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.55 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.53 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.52 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.48 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.43 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 91.37 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.28 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.21 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.15 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 91.12 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 91.11 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 91.11 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.08 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.08 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.07 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.07 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.06 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 91.02 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.01 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.01 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.0 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.95 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.86 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 90.72 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 90.58 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.57 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 90.5 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.47 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 90.42 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.41 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.4 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 90.4 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 90.36 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.34 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.3 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.3 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 90.27 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.26 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 90.24 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.19 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.02 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 89.99 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.99 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 89.94 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 89.81 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.77 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 89.74 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 89.74 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.71 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 89.69 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 89.65 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 89.57 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 89.55 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.42 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 89.35 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 89.3 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 89.3 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 89.16 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.12 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.1 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.03 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 88.94 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 88.94 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 88.83 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 88.59 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 88.53 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 88.46 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.38 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.34 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 88.12 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.11 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 88.1 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 88.05 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 87.89 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 87.86 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 87.7 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 87.68 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.62 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 87.61 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 87.54 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 87.48 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 87.42 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 87.32 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 87.3 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 87.25 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.18 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 87.05 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.97 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 86.83 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 86.54 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 86.47 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 86.41 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 86.34 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 86.33 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.22 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.08 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.07 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 85.87 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.82 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 85.76 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 85.7 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.68 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 85.55 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.06 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 84.9 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 84.88 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 84.74 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 84.72 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 84.66 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 84.58 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 84.5 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 84.38 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 84.37 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 83.02 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.57 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.31 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 82.25 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.41 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 81.33 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 80.88 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 80.81 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=340.41 Aligned_cols=208 Identities=25% Similarity=0.351 Sum_probs=177.7
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCC-CCEEEEECCCCCCCCCCC
Q ss_conf 4323315178995976999986999967999999946979999831099997840799775-520899747998899999
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 164 ~~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~-~~~~aYv~Q~D~~~~~lT 242 (1441)
..++|+|||+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+||.++.+..+ +|.++||+|+..+++.+|
T Consensus 12 ~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~t 88 (232)
T d2awna2 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 88 (232)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC-----
T ss_pred CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHH
T ss_conf 999981117788699899999899982999999996587888---88899999977888644432223433420264333
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999997672178740345567359988419999998589987620012456799999999909953234433564566
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 VrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~r 322 (1441)
|+||+.|+.++++.. + .+...+++.+++.+||++.+|..+.+
T Consensus 89 v~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~l~~~~~~~~~~---- 130 (232)
T d2awna2 89 VAENMSFGLKLAGAK----------K------------------------EVINQRVNQVAEVLQLAHLLDRKPKA---- 130 (232)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHCCCC----------H------------------------HHHHHHHHHHHHHCCCHHHHHCCHHH----
T ss_conf 788978999875998----------8------------------------99999999999757886566489656----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCE
Q ss_conf 78754666899999973398534222599799999899999999997671399599999459215983049499955982
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 gLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~IilL~~G~ 402 (1441)
|||||||||+||++|+.+|++++|||||+|||+.++.+|++.++++.+..+.| ++.++|...++..++|+|++|.+|+
T Consensus 131 -LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~t-ii~vTHd~~~a~~~~dri~vm~~G~ 208 (232)
T d2awna2 131 -LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT-MIYVTHDQVEAMTLADKIVVLDAGR 208 (232)
T ss_dssp ----------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCE-EEEEESCHHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHCCEEEEEECCE
T ss_conf -99999999999999703998899758887889889989999999998742987-9999489999999699999997999
Q ss_pred EEEECCHHHHHH
Q ss_conf 999719877999
Q 000529 403 IVYQGPRELVLE 414 (1441)
Q Consensus 403 ivy~Gp~~~~~~ 414 (1441)
++.+|+++++.+
T Consensus 209 iv~~G~~~el~~ 220 (232)
T d2awna2 209 VAQVGKPLELYH 220 (232)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEECHHHHHH
T ss_conf 999808999973
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=334.08 Aligned_cols=206 Identities=27% Similarity=0.371 Sum_probs=137.6
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCC------C-CCEEEEECCCCCC
Q ss_conf 32331517899597699998699996799999994697999983109999784079977------5-5208997479988
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------P-ERTAAYISQHDNH 237 (1441)
Q Consensus 165 ~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~------~-~~~~aYv~Q~D~~ 237 (1441)
.++|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.+||.++.... + ++.++||+|++.+
T Consensus 16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L 92 (240)
T d1g2912 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHH
T ss_conf 99985606688699899999999980999999996487889---898999999803566444245322551200221222
Q ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999999976721787403455673599884199999985899876200124567999999999099532344335
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1441)
Q Consensus 238 ~~~lTVrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG 317 (1441)
+|.+||+||+.|+.+.++.. +. +...+++++++.+||++.+|..++
T Consensus 93 ~~~ltV~eni~~~~~~~~~~----------~~------------------------e~~~~v~~~l~~~~l~~~~~~~p~ 138 (240)
T d1g2912 93 YPHMTVYDNIAFPLKLRKVP----------RQ------------------------EIDQRVREVAELLGLTELLNRKPR 138 (240)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------HH------------------------HHHHHHHHHHHHHTCGGGTTCCGG
T ss_pred CCHHHHHHHHHHHHHHCCCC----------HH------------------------HHHHHHHHHHHHCCCHHHHCCCHH
T ss_conf 31011667633068772999----------89------------------------999999999987599667629933
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEE
Q ss_conf 64566787546668999999733985342225997999998999999999976713995999994592159830494999
Q 000529 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1441)
Q Consensus 318 ~~~~rgLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~Iil 397 (1441)
+ |||||||||+||++|+.+|++++|||||+|||+.++.+|++.++++.+..+ ++++.++|..+++..++|+|++
T Consensus 139 ~-----LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vTHd~~~~~~~~drv~v 212 (240)
T d1g2912 139 E-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG-VTTIYVTHDQVEAMTMGDRIAV 212 (240)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEE
T ss_pred H-----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHCCEEEE
T ss_conf 4-----999999999999998269988982588765698999899999999986369-8899995999999996999999
Q ss_pred ECCCEEEEECCHHHHH
Q ss_conf 5598299971987799
Q 000529 398 LSDGQIVYQGPRELVL 413 (1441)
Q Consensus 398 L~~G~ivy~Gp~~~~~ 413 (1441)
|.+|+++..|+++++.
T Consensus 213 m~~G~iv~~G~~~el~ 228 (240)
T d1g2912 213 MNRGVLQQVGSPDEVY 228 (240)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEECCHHHHH
T ss_conf 9899999985999998
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=335.80 Aligned_cols=207 Identities=25% Similarity=0.352 Sum_probs=168.5
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCC-CEEEEECCCCCCCCCCCH
Q ss_conf 3233151789959769999869999679999999469799998310999978407997755-208997479988999999
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-RTAAYISQHDNHIGEMTV 243 (1441)
Q Consensus 165 ~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~~-~~~aYv~Q~D~~~~~lTV 243 (1441)
..+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++....++ |.++||+|+..+++.+||
T Consensus 19 ~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 95 (239)
T d1v43a3 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95 (239)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHH
T ss_conf 99981306788799899999999982999999997589998---787999164135477000158998003353422209
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99999976721787403455673599884199999985899876200124567999999999099532344335645667
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1441)
Q Consensus 244 rEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rg 323 (1441)
+||+.|.++.++.. +. +...+++.+++.+||++.+|..+. .
T Consensus 96 ~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 136 (239)
T d1v43a3 96 YENIAFPLKIKKFP----------KD------------------------EIDKRVRWAAELLQIEELLNRYPA-----Q 136 (239)
T ss_dssp HHHHHTTCC--CCC----------HH------------------------HHHHHHHHHHHHTTCGGGTTSCTT-----T
T ss_pred HHHHHHHHHHCCCC----------HH------------------------HHHHHHHHHHHHCCCHHHHCCCHH-----H
T ss_conf 99999999873999----------99------------------------999999999987598556609954-----6
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEE
Q ss_conf 87546668999999733985342225997999998999999999976713995999994592159830494999559829
Q 000529 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1441)
Q Consensus 324 LSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~IilL~~G~i 403 (1441)
|||||||||+||++|+.+|++++|||||+|||+.++.+|++.++++....+.| ++.++|...++..++|+|++|++|++
T Consensus 137 LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~t-ii~vTHd~~~a~~~~dri~vm~~G~i 215 (239)
T d1v43a3 137 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT-TIYVTHDQVEAMTMGDRIAVMNRGQL 215 (239)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE-EEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHCCEEEEEECCEE
T ss_conf 99999889999766404998243068866689899989999999998731980-79994899999986999999989999
Q ss_pred EEECCHHHHHH
Q ss_conf 99719877999
Q 000529 404 VYQGPRELVLE 414 (1441)
Q Consensus 404 vy~Gp~~~~~~ 414 (1441)
+..|+++++.+
T Consensus 216 v~~G~~~el~~ 226 (239)
T d1v43a3 216 LQIGSPTEVYL 226 (239)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHHH
T ss_conf 99859999986
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=332.46 Aligned_cols=217 Identities=22% Similarity=0.280 Sum_probs=122.6
Q ss_pred EEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 26701387872441000148887861652050678848819999646999747899736189788627999999592077
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 923 (1441)
++++|++.++... ....++|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC--CCCCCEEECCEEEE
T ss_conf 7998279996999---------814898615057886997999989998988899998758863--66773288676852
Q ss_pred C------CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1------1223078996158988988898899999877119999998899999999999839964222334698877679
Q 000529 924 Q------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1441)
Q Consensus 924 ~------~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glS 997 (1441)
. ..+++.+|||+|+..+.|.+||+|++.|...++ ..+.++.+++++++++.++|.+..+..++ .||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~~~-----~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSCBS-----CCC
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCHHHHCCHH-----HCC
T ss_conf 0875551155416643022522279964999999999984---99989999999999997699035548943-----499
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEEE
Q ss_conf 88988999999996199766982999999999999999999999866-99899996478689998627587992594999
Q 000529 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1441)
Q Consensus 998 gGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG~~v 1076 (1441)
||||||++||++|+.+|++|++||||+|||+.++..|++.++++.++ |.|||+++|+.. ++...+|++++|.+ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999989998640105898687446556589888567999999998646978999838999-99986999999979-9999
Q ss_pred EECCC
Q ss_conf 97189
Q 000529 1077 YVGPL 1081 (1441)
Q Consensus 1077 y~G~~ 1081 (1441)
..|++
T Consensus 221 ~~G~~ 225 (240)
T d3dhwc1 221 EQDTV 225 (240)
T ss_dssp EEEET
T ss_pred EECCH
T ss_conf 98799
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=328.84 Aligned_cols=214 Identities=26% Similarity=0.369 Sum_probs=184.8
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCC-CEEEEECCCCCCCCCCCHH
Q ss_conf 233151789959769999869999679999999469799998310999978407997755-2089974799889999999
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-RTAAYISQHDNHIGEMTVR 244 (1441)
Q Consensus 166 ~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~~-~~~aYv~Q~D~~~~~lTVr 244 (1441)
.+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.+..++ +.++||+|+..++|.+||+
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~ 90 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVK 90 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHH
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHH
T ss_conf 7884337898799899999899982999999996476888---7889995673465216574056151211117466577
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999767217874034556735998841999999858998762001245679999999990995323443356456678
Q 000529 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1441)
Q Consensus 245 EtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rgL 324 (1441)
||+.|+.+.++... ..+++.+++.+||.+.+|..+++ |
T Consensus 91 enl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~~-----L 128 (229)
T d3d31a2 91 KNLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPLT-----L 128 (229)
T ss_dssp HHHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGGG-----S
T ss_pred HHHHHHHHHCCCCH-------------------------------------HHHHHHHHHHHCCHHHHHCCHHH-----C
T ss_conf 88888776405538-------------------------------------99999999982565557589554-----7
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEEE
Q ss_conf 75466689999997339853422259979999989999999999767139959999945921598304949995598299
Q 000529 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404 (1441)
Q Consensus 325 SGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~IilL~~G~iv 404 (1441)
||||||||+||++|+.+|++++|||||+|||+.++.+|++.++++.+.. +++++.++|...++..++|+|++|.+|+++
T Consensus 129 SGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~-g~tii~vtHd~~~~~~~~drv~vm~~G~iv 207 (229)
T d3d31a2 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADRIAVVMDGKLI 207 (229)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred CHHHHCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHCCEEEEEECCEEE
T ss_conf 9998401403043443677144347876799899999999999998647-968999749999999969999999799999
Q ss_pred EECCHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 97198779999985598799999935699
Q 000529 405 YQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1441)
Q Consensus 405 y~Gp~~~~~~~F~~~G~~cp~~~~~aDfl 433 (1441)
.+|+++++.+ -|.+.-+++|+
T Consensus 208 ~~g~~~el~~--------~P~~~~v~~fl 228 (229)
T d3d31a2 208 QVGKPEEIFE--------KPVEGRVASFV 228 (229)
T ss_dssp EEECHHHHHS--------SCCTTHHHHHH
T ss_pred EECCHHHHHH--------CCCCHHHHHCC
T ss_conf 9869999986--------89987998506
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=331.98 Aligned_cols=207 Identities=22% Similarity=0.291 Sum_probs=141.0
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCC-----C-CCEEEEECCCCCC
Q ss_conf 432331517899597699998699996799999994697999983109999784079977-----5-5208997479988
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-----P-ERTAAYISQHDNH 237 (1441)
Q Consensus 164 ~~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~-----~-~~~~aYv~Q~D~~ 237 (1441)
...+|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... + ++.++||+|+..+
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCC
T ss_conf 989980407898799899999899980999999997586888---74599999995137311153120451477304334
Q ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999999976721787403455673599884199999985899876200124567999999999099532344335
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1441)
Q Consensus 238 ~~~lTVrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG 317 (1441)
+|.+||+||+.|+.+..+.. + .+.+.+++.+++.+||++.+|..++
T Consensus 94 ~p~ltv~eni~~~l~~~~~~----------~------------------------~~~~~~v~~~l~~~gL~~~~~~~p~ 139 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNMKMS----------K------------------------EEIRKRVEEVAKILDIHHVLNHFPR 139 (242)
T ss_dssp CTTSCHHHHHHGGGTTSSCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTSCGG
T ss_pred CCCCCHHHHHHHHHHHHCCC----------H------------------------HHHHHHHHHHHHHCCHHHHHHCCHH
T ss_conf 66665777766556761379----------9------------------------9999999999866591766648954
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEE
Q ss_conf 64566787546668999999733985342225997999998999999999976713995999994592159830494999
Q 000529 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1441)
Q Consensus 318 ~~~~rgLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~Iil 397 (1441)
+ |||||||||+||++|+.+|+++++||||+|||+.++.++++.++++.+..+.| ++.++|...++..++|+|++
T Consensus 140 ~-----LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~t-vi~vTHd~~~~~~~~dri~v 213 (242)
T d1oxxk2 140 E-----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT-LLVVSHDPADIFAIADRVGV 213 (242)
T ss_dssp G-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCE-EEEEESCHHHHHHHCSEEEE
T ss_pred H-----CCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHCCEEEE
T ss_conf 5-----99999858998757760466145447866799899889989999998635987-99997999999996999999
Q ss_pred ECCCEEEEECCHHHHH
Q ss_conf 5598299971987799
Q 000529 398 LSDGQIVYQGPRELVL 413 (1441)
Q Consensus 398 L~~G~ivy~Gp~~~~~ 413 (1441)
|++|+++..|+++++.
T Consensus 214 m~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 214 LVKGKLVQVGKPEDLY 229 (242)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEECCHHHHH
T ss_conf 9899999986999998
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=324.10 Aligned_cols=214 Identities=26% Similarity=0.339 Sum_probs=190.1
Q ss_pred EEEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02670138787244100014888786165205067884881999964699974789973618978862799999959207
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 922 (1441)
.+.++|+++++ +...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nl~k~y-------------g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVF-------------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred CEEEEEEEEEE-------------CCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 18998699998-------------99999856066886998999999999809999999964878--8989899999980
Q ss_pred CCC-------CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 711-------2230789961589889888988999998771199999988999999999998399642223346988776
Q 000529 923 KQE-------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG 995 (1441)
Q Consensus 923 ~~~-------~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~g 995 (1441)
... ..++.+|||+|++.+.|.+||+|++.|...++ ..+.++.+++++++++.++|.+..+..++ .
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p~-----~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----E 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----G
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCHH-----H
T ss_conf 356644424532255120022122231011667633068772---99989999999999987599667629933-----4
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCE
Q ss_conf 7988988999999996199766982999999999999999999999866-998999964786899986275879925949
Q 000529 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 996 lSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG~ 1074 (1441)
||||||||++||++|+.+|++|+|||||+|||+.++..+++.++++.++ |.|||+++|+.. ++...+|++++|.+ |+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CE
T ss_conf 99999999999999826998898258876569899989999999998636988999959999-99996999999989-99
Q ss_pred EEEECCC
Q ss_conf 9997189
Q 000529 1075 EVYVGPL 1081 (1441)
Q Consensus 1075 ~vy~G~~ 1081 (1441)
++..|++
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEECCH
T ss_conf 9998599
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=326.66 Aligned_cols=214 Identities=22% Similarity=0.343 Sum_probs=191.2
Q ss_pred EEEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02670138787244100014888786165205067884881999964699974789973618978862799999959207
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 922 (1441)
.++.+|++.++ ++..+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~I~v~nlsk~y-------------g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEE-------------CCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 49998799999-------------99999813067887998999999999829999999975899--9878799916413
Q ss_pred CC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 71-12230789961589889888988999998771199999988999999999998399642223346988776798898
Q 000529 923 KQ-ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1441)
Q Consensus 923 ~~-~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqr 1001 (1441)
.. ...+|.+|||+|++.++|.+||+|++.|.+.++ ..++++.+++++++++.++|.+..+..+ ..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred CCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHH
T ss_conf 547700015899800335342220999999999873---9999999999999998759855660995-----46999998
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECC
Q ss_conf 8999999996199766982999999999999999999999866-998999964786899986275879925949999718
Q 000529 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1441)
Q Consensus 1002 kRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG~~vy~G~ 1080 (1441)
||++||++|+.+|+||+|||||+|||+.++..+++.++++.++ |.|+|+++|++. ++.+.+|++++|.+ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 89999766404998243068866689899989999999998731980799948999-99986999999989-99999859
Q ss_pred C
Q ss_conf 9
Q 000529 1081 L 1081 (1441)
Q Consensus 1081 ~ 1081 (1441)
+
T Consensus 221 ~ 221 (239)
T d1v43a3 221 P 221 (239)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=328.87 Aligned_cols=213 Identities=26% Similarity=0.372 Sum_probs=188.0
Q ss_pred EEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 26701387872441000148887861652050678848819999646999747899736189788627999999592077
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 923 (1441)
+.++|+++++ +...+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 Iev~nv~k~y-------------g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAW-------------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEE-------------CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 9999999998-------------99999811177886998999998999829999999965878--88888999999778
Q ss_pred CC-CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 11-22307899615898898889889999987711999999889999999999983996422233469887767988988
Q 000529 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1441)
Q Consensus 924 ~~-~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1002 (1441)
.. ..+|.+|||+|++.++|.+||+|++.|...++. .+.++.+++++++++.++|.+..+..+. .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHH
T ss_conf 886444322234334202643337889789998759---9889999999999975788656648965-----69999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 99999999619976698299999999999999999999986-69989999647868999862758799259499997189
Q 000529 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1003 Rl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~vy~G~~ 1081 (1441)
|++||++|+.+|++|+|||||+|||+.++..+++.++++.+ .|.|+|+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999703998899758887889889989999999998742987999948999-99996999999979-999998089
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=317.94 Aligned_cols=219 Identities=23% Similarity=0.374 Sum_probs=167.6
Q ss_pred EEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 26701387872441000148887861652050678848819999646999747899736189788627999999592077
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 923 (1441)
++++|++++++.. .....+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCC--CCCCEEEECCEECC
T ss_conf 8999079994899---------820898713377884997999988999982165575068877--77662699999857
Q ss_pred CCC------C-CEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 112------2-3078996158988988898899999877119999998899999999999839964-2223346988776
Q 000529 924 QET------F-ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNG 995 (1441)
Q Consensus 924 ~~~------~-~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~g 995 (1441)
... + ++.+|||+|+..+.|.+||+|++.+...++.....+.+++.+.+.+.++.++|.+ ..+..+ ..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----HH
T ss_conf 6885551231255577880412417686688877578887224789999999999998876242345534880-----23
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCE
Q ss_conf 7988988999999996199766982999999999999999999999866-998999964786899986275879925949
Q 000529 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 996 lSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG~ 1074 (1441)
||||||||++||++|+.+|++|++||||+|||+.++..|++.++++.++ |.|||+++|++ +..+.+|++++|.+ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~--~~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH--HHHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCH--HHHHHCCEEEEEEC-CE
T ss_conf 8999999999875652278889946876546989999999999999984399999987888--99986998999989-99
Q ss_pred EEEECCC
Q ss_conf 9997189
Q 000529 1075 EVYVGPL 1081 (1441)
Q Consensus 1075 ~vy~G~~ 1081 (1441)
++..|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEECCC
T ss_conf 9995257
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=321.71 Aligned_cols=209 Identities=23% Similarity=0.327 Sum_probs=183.5
Q ss_pred CCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCC------CEEEEECCCC
Q ss_conf 4343233151789959769999869999679999999469799998310999978407997755------2089974799
Q 000529 162 KKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE------RTAAYISQHD 235 (1441)
Q Consensus 162 ~~~~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~~------~~~aYv~Q~D 235 (1441)
+....+|+|||+.+++||+++|+|||||||||||++|+|..+|+ +|+|.++|.++.....+ +.++||+|+.
T Consensus 15 ~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~ 91 (240)
T d3dhwc1 15 TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHF 91 (240)
T ss_dssp SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSC
T ss_pred CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEECCEEEEECCHHHHHHHHCCCCCCCCCC
T ss_conf 81489861505788699799998999898889999875886366---773288676852087555115541664302252
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 88999999999999767217874034556735998841999999858998762001245679999999990995323443
Q 000529 236 NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTM 315 (1441)
Q Consensus 236 ~~~~~lTVrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~ 315 (1441)
.+++.+||+||+.|+.+..+... ++...+++.+|+.+||++.+|..
T Consensus 92 ~l~~~~tv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~L~~vgL~~~~~~~ 137 (240)
T d3dhwc1 92 NLLSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSY 137 (240)
T ss_dssp CCCTTSBHHHHHHHHHHTTTCCT----------------------------------THHHHHHHHHHHHHSTTTTTSSC
T ss_pred CCCCCCCHHHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 22799649999999999849998----------------------------------99999999999976990355489
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEE
Q ss_conf 35645667875466689999997339853422259979999989999999999767139959999945921598304949
Q 000529 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 316 VG~~~~rgLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~I 395 (1441)
+++ |||||||||+||++|+.+|+++++||||+|||+.++.+|++.|+++.+..+ ++++.++|...++..++|+|
T Consensus 138 ~~~-----LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vTHdl~~~~~~~dri 211 (240)
T d3dhwc1 138 PSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG-LTILLITHEMDVVKRICDCV 211 (240)
T ss_dssp BSC-----CCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHC-CEEEEEBSCHHHHHHHCSEE
T ss_pred HHH-----CCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHCCEE
T ss_conf 434-----999999899986401058986874465565898885679999999986469-78999838999999869999
Q ss_pred EEECCCEEEEECCHHHHH
Q ss_conf 995598299971987799
Q 000529 396 ILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 396 ilL~~G~ivy~Gp~~~~~ 413 (1441)
++|.+|++++.|+++++.
T Consensus 212 ~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 212 AVISNGELIEQDTVSEVF 229 (240)
T ss_dssp EEEETTEEEEEEETTTTT
T ss_pred EEEECCEEEEECCHHHHH
T ss_conf 999799999987999997
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=323.03 Aligned_cols=216 Identities=27% Similarity=0.386 Sum_probs=190.3
Q ss_pred EEEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02670138787244100014888786165205067884881999964699974789973618978862799999959207
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 922 (1441)
.+..+|++++++. +...+|+|||+.+++||.++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEEEEEEECC-----------CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 8999757999889-----------99899804078987998999998999809999999975868--8874599999995
Q ss_pred CC------CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 71------122307899615898898889889999987711999999889999999999983996422233469887767
Q 000529 923 KQ------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1441)
Q Consensus 923 ~~------~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~gl 996 (1441)
.. ...+|.+|||+|+..++|.+||+|++.|....+ ..+.++.+++++++++.++|.+..+..++ .|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----EL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred ECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCHH-----HC
T ss_conf 13731115312045147730433466665777766556761---37999999999999866591766648954-----59
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEE
Q ss_conf 988988999999996199766982999999999999999999999866-9989999647868999862758799259499
Q 000529 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1441)
Q Consensus 997 SgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG~~ 1075 (1441)
|||||||++||++|+.+|++|++||||+|||+.++..+++.++++.++ |.|+|+++|++. ++.+.+|++++|.+ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEE
T ss_conf 9999858998757760466145447866799899889989999998635987999979999-99996999999989-999
Q ss_pred EEECCC
Q ss_conf 997189
Q 000529 1076 VYVGPL 1081 (1441)
Q Consensus 1076 vy~G~~ 1081 (1441)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEECCH
T ss_conf 998699
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=318.20 Aligned_cols=206 Identities=23% Similarity=0.303 Sum_probs=173.3
Q ss_pred CCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCC-------CEEEEECCC
Q ss_conf 4343233151789959769999869999679999999469799998310999978407997755-------208997479
Q 000529 162 KKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-------RTAAYISQH 234 (1441)
Q Consensus 162 ~~~~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~~-------~~~aYv~Q~ 234 (1441)
+....+|+|||+.+++||+++|+|||||||||||++|+|..+|+ +|+|.++|.++....++ +.++||+|+
T Consensus 15 ~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~ 91 (230)
T d1l2ta_ 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ 91 (230)
T ss_dssp TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTT
T ss_pred CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCC---CCEEEECCEECCCCCHHHCCHHHCCEEEEEECC
T ss_conf 82089871337788499799998899998216557506887777---662699999857688555123125557788041
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC-CCC
Q ss_conf 9889999999999997672178740345567359988419999998589987620012456799999999909953-234
Q 000529 235 DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI-CAD 313 (1441)
Q Consensus 235 D~~~~~lTVrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~-~~d 313 (1441)
..++|.+||+||+.|+...+..+.. +. .+....+..+++.+||.+ .+|
T Consensus 92 ~~l~~~~tv~eni~~~~~~~~~~~~-------~~------------------------~~~~~~~~~~l~~~~L~~~~~~ 140 (230)
T d1l2ta_ 92 FNLIPLLTALENVELPLIFKYRGAM-------SG------------------------EERRKRALECLKMAELEERFAN 140 (230)
T ss_dssp CCCCTTSCHHHHHHHHHHTCCSSCC-------CH------------------------HHHHHHHHHHHHHTTCCGGGTT
T ss_pred HHHCCCCCHHHHHHHHHHHHCCCCC-------CH------------------------HHHHHHHHHHHHHHCHHHHHHC
T ss_conf 2417686688877578887224789-------99------------------------9999999998876242345534
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCC
Q ss_conf 43356456678754666899999973398534222599799999899999999997671399599999459215983049
Q 000529 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1441)
Q Consensus 314 T~VG~~~~rgLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD 393 (1441)
..+. .|||||||||+||++|+.+|+++++||||||||+.++.+|++.|+++.+..+.|+|+ ++|...++ .++|
T Consensus 141 ~~p~-----~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~-vTHd~~~a-~~~d 213 (230)
T d1l2ta_ 141 HKPN-----QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVV-VTHDINVA-RFGE 213 (230)
T ss_dssp CCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEE-ECSCHHHH-TTSS
T ss_pred CCHH-----HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEE-ECCCHHHH-HHCC
T ss_conf 8802-----389999999998756522788899468765469899999999999999843999999-87888999-8699
Q ss_pred EEEEECCCEEEEECC
Q ss_conf 499955982999719
Q 000529 394 DIILLSDGQIVYQGP 408 (1441)
Q Consensus 394 ~IilL~~G~ivy~Gp 408 (1441)
+|++|.+|+++..|+
T Consensus 214 rv~~m~~G~Iv~~g~ 228 (230)
T d1l2ta_ 214 RIIYLKDGEVEREEK 228 (230)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEEEEECCEEEEECC
T ss_conf 899998999999525
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=316.83 Aligned_cols=206 Identities=25% Similarity=0.298 Sum_probs=122.0
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCC--CCEEEEECCCCCCCCCCC
Q ss_conf 323315178995976999986999967999999946979999831099997840799775--520899747998899999
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP--ERTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 165 ~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~--~~~~aYv~Q~D~~~~~lT 242 (1441)
+++|+|+|+.+++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.+..+... ++.++||+|++..++.+|
T Consensus 15 ~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~lt 91 (238)
T d1vpla_ 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 91 (238)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCCC
T ss_conf 99980625688489799999999999999999996698878---887999867244683988721867500154687866
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999997672178740345567359988419999998589987620012456799999999909953234433564566
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 VrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~r 322 (1441)
|+|++.|.+.+.+.. . .+....++.+++.++|++-.+..+++
T Consensus 92 v~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~---- 133 (238)
T d1vpla_ 92 GIEYLRFVAGFYASS----------S------------------------SEIEEMVERATEIAGLGEKIKDRVST---- 133 (238)
T ss_dssp HHHHHHHHHHHHCCC----------H------------------------HHHHHHHHHHHHHHCCGGGGGSBGGG----
T ss_pred HHHHHHHHHHHCCCC----------H------------------------HHHHHHHHHHHHHCCCHHHHHHHHHH----
T ss_conf 778889899861799----------8------------------------99999999999867978888504533----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCE
Q ss_conf 78754666899999973398534222599799999899999999997671399599999459215983049499955982
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 gLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~IilL~~G~ 402 (1441)
+|||||||+++|++|+++|++++|||||+|||+.++.+|++.++++.. .+. +|+..+|..+++..++|+|++|++|+
T Consensus 134 -lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~-tii~~tH~l~~~~~~~drv~vl~~G~ 210 (238)
T d1vpla_ 134 -YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGL-TILVSSHNMLEVEFLCDRIALIHNGT 210 (238)
T ss_dssp -CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC-EEEEEECCHHHHTTTCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCC-EEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf -799898999999998659998873379889798999999999999996-599-89999598999999699999998999
Q ss_pred EEEECCHHHHHH
Q ss_conf 999719877999
Q 000529 403 IVYQGPRELVLE 414 (1441)
Q Consensus 403 ivy~Gp~~~~~~ 414 (1441)
+++.|+++++.+
T Consensus 211 iv~~g~~~el~~ 222 (238)
T d1vpla_ 211 IVETGTVEELKE 222 (238)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEECCHHHHHH
T ss_conf 999928999986
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=316.05 Aligned_cols=210 Identities=23% Similarity=0.352 Sum_probs=178.6
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCC-CCEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 5178995976999986999967999999946979999831099997840799775-520899747998899999999999
Q 000529 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1441)
Q Consensus 170 ~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~-~~~~aYv~Q~D~~~~~lTVrEtL~ 248 (1441)
|||+.++ ++.++|+|||||||||||++|+|.++|+ +|+|.+||.++....+ ++.++||+|++.++|.+||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHH
T ss_conf 9999749-9799999799980999999997399989---62899999998869989928522523144352201557666
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 97672178740345567359988419999998589987620012456799999999909953234433564566787546
Q 000529 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328 (1441)
Q Consensus 249 Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rgLSGGQ 328 (1441)
|+.+.. .+.+ .+.+++.+++.+||++.+|..+.. |||||
T Consensus 93 ~~l~~~------------~~~~------------------------~~~~v~~~l~~~gl~~~~~~~~~~-----LSGG~ 131 (240)
T d2onka1 93 YGLRNV------------ERVE------------------------RDRRVREMAEKLGIAHLLDRKPAR-----LSGGE 131 (240)
T ss_dssp TTCTTS------------CHHH------------------------HHHHHHHHHHTTTCTTTTTCCGGG-----SCHHH
T ss_pred HHHCCC------------CHHH------------------------HHHHHHHHHHHCCCHHHHHCCHHH-----CCHHH
T ss_conf 532336------------7788------------------------999999999863837566579444-----89999
Q ss_pred HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 66899999973398534222599799999899999999997671399599999459215983049499955982999719
Q 000529 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 408 (1441)
Q Consensus 329 KKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~IilL~~G~ivy~Gp 408 (1441)
||||+||++|+.+|++++|||||+|||+.++.++++.++++.+..+.| ++.++|...++..++|+|++|++|+++.+|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~t-vi~vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP-ILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCC-EEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 899999877751677067528655588799999999999998743976-9998189999999699999998999999906
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 87799999855987999999356997
Q 000529 409 RELVLEFFESMGFKCPKRKGVADFLQ 434 (1441)
Q Consensus 409 ~~~~~~~F~~~G~~cp~~~~~aDfl~ 434 (1441)
++++.. |+...++.|+.
T Consensus 211 ~~el~~---------~~~~~v~~fl~ 227 (240)
T d2onka1 211 LKELFS---------AKNGEVAEFLS 227 (240)
T ss_dssp HHHHHH---------SCCSSHHHHGG
T ss_pred HHHHHC---------CCCHHHHHHHC
T ss_conf 999832---------99889999857
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=312.80 Aligned_cols=209 Identities=24% Similarity=0.372 Sum_probs=165.9
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCC---CCEEEEECCCCCCCCC
Q ss_conf 4323315178995976999986999967999999946979999831099997840799775---5208997479988999
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 164 ~~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~---~~~~aYv~Q~D~~~~~ 240 (1441)
..++|+|||+.+++|+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|+.. +..
T Consensus 15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~-lf~ 90 (241)
T d2pmka1 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNV-LLN 90 (241)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCC-CTT
T ss_pred CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC---CCEEEECCEEECCCCHHHHHCEEEEEECCCC-CCC
T ss_conf 960374248998499999999999998999999997357888---8899999999440024655352889824465-578
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999976721787403455673599884199999985899876200124567999999999099532344335645
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTVrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~ 320 (1441)
.||+||+.|+..... .+...++....+ ..-.+..++...||.+|..
T Consensus 91 ~Ti~eNi~~~~~~~~-------------------------~~~~~~~~~~~~--------~~~~i~~~~~~~~t~i~~~- 136 (241)
T d2pmka1 91 RSIIDNISLANPGMS-------------------------VEKVIYAAKLAG--------AHDFISELREGYNTIVGEQ- 136 (241)
T ss_dssp SBHHHHHCTTSTTCC-------------------------HHHHHHHHHHHT--------CHHHHTTSTTGGGSBCSTT-
T ss_pred CCCCCCCCCCCCCCC-------------------------HHHHHHHHHHHH--------HHHHHHHHHCCHHHHCCCC-
T ss_conf 400035223575543-------------------------888999999975--------5788876320134432787-
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECC
Q ss_conf 66787546668999999733985342225997999998999999999976713995999994592159830494999559
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rgLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~IilL~~ 400 (1441)
...|||||||||+|||+++.+|++++||||||+||+.++.+|++.|+++. .++|+|+ ++|.. +....+|+|++|++
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~-itH~l-~~~~~~D~i~vl~~ 212 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVII-IAHRL-STVKNADRIIVMEK 212 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEE-ECSSG-GGGTTSSEEEEEET
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH--CCCEEEE-EECCH-HHHHHCCEEEEEEC
T ss_conf 88669889898754434441651355647765559899999999999985--8998999-97889-99984999999989
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 82999719877999
Q 000529 401 GQIVYQGPRELVLE 414 (1441)
Q Consensus 401 G~ivy~Gp~~~~~~ 414 (1441)
|+++.+|++++++.
T Consensus 213 G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 213 GKIVEQGKHKELLS 226 (241)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHH
T ss_conf 99999889999982
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=310.12 Aligned_cols=214 Identities=23% Similarity=0.309 Sum_probs=190.8
Q ss_pred EEEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02670138787244100014888786165205067884881999964699974789973618978862799999959207
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 922 (1441)
.+..+|++.++ +++.+|+|+|+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 2 aI~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i 66 (238)
T d1vpla_ 2 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 66 (238)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEE-------------CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 78999589999-------------99999806256884897999999999999999999966988--7888799986724
Q ss_pred CC--CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 71--1223078996158988988898899999877119999998899999999999839964222334698877679889
Q 000529 923 KQ--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1441)
Q Consensus 923 ~~--~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGq 1000 (1441)
.. ...++.++||+|.+..++.+|+.|++.|.+.++. .+..+.++.++++++.++|.+..+..++ .|||||
T Consensus 67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~ 138 (238)
T d1vpla_ 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGM 138 (238)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHH
T ss_pred CCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHH-----HCCHHH
T ss_conf 46839887218675001546878667788898998617---9989999999999986797888850453-----379989
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECC
Q ss_conf 88999999996199766982999999999999999999999866998999964786899986275879925949999718
Q 000529 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1441)
Q Consensus 1001 rkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~vy~G~ 1080 (1441)
|||+.||++|+.+|++|+|||||+|||+.++..+++.++++++.|+|||+++|+++ ++...+|++++|.+ |++++.|+
T Consensus 139 ~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~ 216 (238)
T d1vpla_ 139 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216 (238)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 89999999986599988733798897989999999999999965998999959899-99996999999989-99999928
Q ss_pred C
Q ss_conf 9
Q 000529 1081 L 1081 (1441)
Q Consensus 1081 ~ 1081 (1441)
+
T Consensus 217 ~ 217 (238)
T d1vpla_ 217 V 217 (238)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=316.17 Aligned_cols=209 Identities=21% Similarity=0.271 Sum_probs=182.9
Q ss_pred EEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 26701387872441000148887861652050678848819999646999747899736189788627999999592077
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 923 (1441)
+..+|+++++. . .+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------C-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 89998999949-------------9-78843378987998999998999829999999964768--88788999567346
Q ss_pred CC-CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 11-22307899615898898889889999987711999999889999999999983996422233469887767988988
Q 000529 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1441)
Q Consensus 924 ~~-~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1002 (1441)
.. ..++.+|||+|+..++|.+||+|++.|...++.- .. .++++++++.+++.+..+..++ .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~---~~---~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KD---PKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CC---HHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHH
T ss_pred CCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCC---CH---HHHHHHHHHHHCCHHHHHCCHH-----HCCHHHHC
T ss_conf 5216574056151211117466577888887764055---38---9999999998256555758955-----47999840
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 99999999619976698299999999999999999999986-69989999647868999862758799259499997189
Q 000529 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1003 Rl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~vy~G~~ 1081 (1441)
|++||++|+.+|++|+|||||+|||+.++..+++.++++.+ .|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred CHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 1403043443677144347876799899999999999998647968999749999-99996999999979-999998699
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=311.93 Aligned_cols=204 Identities=23% Similarity=0.334 Sum_probs=139.0
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCC----CEEEEECCCCCCCCC
Q ss_conf 3233151789959769999869999679999999469799998310999978407997755----208997479988999
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHIGE 240 (1441)
Q Consensus 165 ~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~~----~~~aYv~Q~D~~~~~ 240 (1441)
+++|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....++ ..++|++|+..+++.
T Consensus 19 ~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ 95 (240)
T d1ji0a_ 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88883025788899799999999985999999996788888---038984244344660888887423556765545776
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHC-CCCCCCCCCCCCC
Q ss_conf 999999999767217874034556735998841999999858998762001245679999999990-9953234433564
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVL-GLDICADTMVGDE 319 (1441)
Q Consensus 241 lTVrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~L-GL~~~~dT~VG~~ 319 (1441)
+||+||+.+++....... ......+.+++.+ +|++.+|..+++
T Consensus 96 ltv~en~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~- 139 (240)
T d1ji0a_ 96 LTVYENLMMGAYNRKDKE-----------------------------------GIKRDLEWIFSLFPRLKERLKQLGGT- 139 (240)
T ss_dssp SBHHHHHHGGGTTCCCSS-----------------------------------HHHHHHHHHHHHCHHHHTTTTSBSSS-
T ss_pred CCHHHHHHHHHHHCCCHH-----------------------------------HHHHHHHHHHHHHHCHHHHHHCCHHH-
T ss_conf 369999998887327888-----------------------------------99999999998741768887585433-
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEC
Q ss_conf 56678754666899999973398534222599799999899999999997671399599999459215983049499955
Q 000529 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1441)
Q Consensus 320 ~~rgLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~IilL~ 399 (1441)
|||||||||+||++|+.+|++|+|||||+|||+.++.+|++.++++.. .+ ++|+.++|...++..++|+|++|+
T Consensus 140 ----LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g-~til~~tH~l~~~~~~~drv~vl~ 213 (240)
T d1ji0a_ 140 ----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EG-TTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT-CCEEEEESCHHHHHHHCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEECCHHHHHHHCCEEEEEE
T ss_conf ----899999999999999829987400398867999999999999999996-89-989999588999999699999998
Q ss_pred CCEEEEECCHHHHH
Q ss_conf 98299971987799
Q 000529 400 DGQIVYQGPRELVL 413 (1441)
Q Consensus 400 ~G~ivy~Gp~~~~~ 413 (1441)
+|++++.|+++++.
T Consensus 214 ~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEECCHHHHH
T ss_conf 99999984899984
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=313.42 Aligned_cols=220 Identities=26% Similarity=0.345 Sum_probs=167.1
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCC----CEEEEECCCCCCCC
Q ss_conf 43233151789959769999869999679999999469799998310999978407997755----20899747998899
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHIG 239 (1441)
Q Consensus 164 ~~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~~----~~~aYv~Q~D~~~~ 239 (1441)
..++|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....++ +.++|++|+...++
T Consensus 16 ~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~ 92 (254)
T d1g6ha_ 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLK 92 (254)
T ss_dssp TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGG
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 968871217998899799999999984999999997797688---73799999966405699999833872577642478
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999997672178740345567359988419999998589987620012456799999999909953234433564
Q 000529 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1441)
Q Consensus 240 ~lTVrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~ 319 (1441)
.+||.||+.+++...+..... ..-.... .+ ...+....++.+++.+++++.+|..+++
T Consensus 93 ~ltv~enl~~~~~~~~~~~~~-------~~~~~~~-~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 150 (254)
T d1g6ha_ 93 EMTVLENLLIGEICPGESPLN-------SLFYKKW-IP-------------KEEEMVEKAFKILEFLKLSHLYDRKAGE- 150 (254)
T ss_dssp GSBHHHHHHGGGTSTTSCHHH-------HHHHCSS-CC-------------CCHHHHHHHHHHHHHTTCGGGTTSBGGG-
T ss_pred CCEEEEEEEEHHHHCCCCCHH-------HHHHHCC-CC-------------CHHHHHHHHHHHHHHCCCCHHCCCCHHH-
T ss_conf 874232143013330345045-------6654213-53-------------2899999999998761963020595356-
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEC
Q ss_conf 56678754666899999973398534222599799999899999999997671399599999459215983049499955
Q 000529 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1441)
Q Consensus 320 ~~rgLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~IilL~ 399 (1441)
|||||||||.||++|+.+|++++|||||+|||+.++.+|++.++++.. . +++|+.++|..+++.+++|+|++|+
T Consensus 151 ----LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~-g~til~vsHdl~~~~~~~Drv~vm~ 224 (254)
T d1g6ha_ 151 ----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K-GITFLIIEHRLDIVLNYIDHLYVMF 224 (254)
T ss_dssp ----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCSTTGGGCSEEEEEE
T ss_pred ----CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHHCCEEEEEE
T ss_conf ----991888899999999759272324397656999999999999999997-8-9989999476999998699999996
Q ss_pred CCEEEEECCHHHHHH
Q ss_conf 982999719877999
Q 000529 400 DGQIVYQGPRELVLE 414 (1441)
Q Consensus 400 ~G~ivy~Gp~~~~~~ 414 (1441)
+|+++..|+.+++.+
T Consensus 225 ~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 225 NGQIIAEGRGEEEIK 239 (254)
T ss_dssp TTEEEEEEESHHHHH
T ss_pred CCEEEEEECHHHHHH
T ss_conf 998999966899865
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=315.09 Aligned_cols=213 Identities=22% Similarity=0.374 Sum_probs=166.6
Q ss_pred CCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCC---CEEEEECCCCCCCC
Q ss_conf 343233151789959769999869999679999999469799998310999978407997755---20899747998899
Q 000529 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE---RTAAYISQHDNHIG 239 (1441)
Q Consensus 163 ~~~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~~---~~~aYv~Q~D~~~~ 239 (1441)
....+|+|||+.+++|+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+...+ +.++||+|+...+
T Consensus 25 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf- 100 (251)
T d1jj7a_ 25 PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF- 100 (251)
T ss_dssp TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC-
T ss_pred CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCCCCC-
T ss_conf 9997674438998499899999999984999999986143787---689988998531101378887765404565002-
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999997672178740345567359988419999998589987620012456799999999909953234433564
Q 000529 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1441)
Q Consensus 240 ~lTVrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~ 319 (1441)
..||+||+.|+...... . + +.....+. ....-.+-+|++..||.+|.
T Consensus 101 ~~tv~eni~~g~~~~~~--~-~---~~~~~~~~--------------------------~~~~~~i~~l~~g~~~~i~~- 147 (251)
T d1jj7a_ 101 GRSLQENIAYGLTQKPT--M-E---EITAAAVK--------------------------SGAHSFISGLPQGYDTEVDE- 147 (251)
T ss_dssp SSBHHHHHHCSCSSCCC--H-H---HHHHHHHH--------------------------HTCHHHHHTSTTGGGCBCCS-
T ss_pred CCCHHHHHHHHHCCCCH--H-H---HHHHHHHH--------------------------HHHHHHHHHCCCCCHHHHHC-
T ss_conf 76346554542101302--7-8---89999999--------------------------98999998561211136751-
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEC
Q ss_conf 56678754666899999973398534222599799999899999999997671399599999459215983049499955
Q 000529 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1441)
Q Consensus 320 ~~rgLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~IilL~ 399 (1441)
....|||||||||+|||+|+.+|++++||||||+||+.+..+|++.|+++.+..++|+++ ++|... ....+|+|++|.
T Consensus 148 ~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~-itH~l~-~~~~aDrI~vl~ 225 (251)
T d1jj7a_ 148 AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLL-ITQHLS-LVEQADHILFLE 225 (251)
T ss_dssp SCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEE-ECSCHH-HHHTCSEEEEEE
T ss_pred CCCCCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHH-HHHHCCEEEEEE
T ss_conf 676689547048998604456870787167576568536899999999976506989999-959799-998599999998
Q ss_pred CCEEEEECCHHHHHH
Q ss_conf 982999719877999
Q 000529 400 DGQIVYQGPRELVLE 414 (1441)
Q Consensus 400 ~G~ivy~Gp~~~~~~ 414 (1441)
+|+++.+|+++++++
T Consensus 226 ~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 226 GGAIREGGTHQQLME 240 (251)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHH
T ss_conf 999999889999985
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=311.35 Aligned_cols=218 Identities=23% Similarity=0.260 Sum_probs=187.0
Q ss_pred EEEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02670138787244100014888786165205067884881999964699974789973618978862799999959207
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 922 (1441)
-+..+|++.++ +..++|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 iL~v~nlsk~y-------------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEE-------------CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 69997789997-------------99688712179988997999999999849999999977976--8873799999966
Q ss_pred CCCC----CCEEEEEECCCCCCCCCCCHHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 7112----23078996158988988898899999877119----------999998899999999999839964222334
Q 000529 923 KQET----FARISGYCEQNDIHSPFVTVYESLFYSAWLRL----------PPEVNSETRKMFIEEVMELVELKPLRQSLV 988 (1441)
Q Consensus 923 ~~~~----~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~----------~~~~~~~~~~~~v~~vl~~l~L~~~~~~~v 988 (1441)
.... .++-++|++|+....+.+||.|++.+++..+. ......++..+.++++++.+++.+..+..+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH
T ss_conf 40569999983387257764247887423214301333034504566542135328999999999987619630205953
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEE
Q ss_conf 69887767988988999999996199766982999999999999999999999866998999964786899986275879
Q 000529 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1068 (1441)
Q Consensus 989 g~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~ill 1068 (1441)
+ .||||||||+.||++|+.+|++|+|||||+|||+.++..+++.+++++++|.|||+++|+.. ++.+.+|++++
T Consensus 149 ~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred H-----HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEE
T ss_conf 5-----69918888999999997592723243976569999999999999999978998999947699-99986999999
Q ss_pred EECCCEEEEECCCC
Q ss_conf 92594999971898
Q 000529 1069 MKRGGREVYVGPLG 1082 (1441)
Q Consensus 1069 l~~gG~~vy~G~~g 1082 (1441)
|.+ |+++..|++.
T Consensus 223 m~~-G~iv~~g~~~ 235 (254)
T d1g6ha_ 223 MFN-GQIIAEGRGE 235 (254)
T ss_dssp EET-TEEEEEEESH
T ss_pred EEC-CEEEEEECHH
T ss_conf 969-9899996689
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-45 Score=307.27 Aligned_cols=205 Identities=25% Similarity=0.335 Sum_probs=128.9
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCC----------------CCEE
Q ss_conf 323315178995976999986999967999999946979999831099997840799775----------------5208
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----------------ERTA 228 (1441)
Q Consensus 165 ~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~----------------~~~~ 228 (1441)
.++|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++....+ ++.+
T Consensus 15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i 91 (258)
T d1b0ua_ 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91 (258)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCE
T ss_conf 99881506688699799999899982999999997476678---997799999933677520000235176799974544
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCC
Q ss_conf 997479988999999999999767-2178740345567359988419999998589987620012456799999999909
Q 000529 229 AYISQHDNHIGEMTVRETLAFAAR-CQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLG 307 (1441)
Q Consensus 229 aYv~Q~D~~~~~lTVrEtL~Faa~-~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LG 307 (1441)
+||+|+...++.+||.|++.|+.. ..+. .+.+ ....+..+++.+|
T Consensus 92 g~vfQ~~~l~~~~tv~env~~~~~~~~~~----------~~~~------------------------~~~~~~~~l~~~~ 137 (258)
T d1b0ua_ 92 TMVFQHFNLWSHMTVLENVMEAPIQVLGL----------SKHD------------------------ARERALKYLAKVG 137 (258)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCC----------CHHH------------------------HHHHHHHHHHHTT
T ss_pred EEEEECHHHCCCHHCCHHHHHHHHHHCCC----------CHHH------------------------HHHHHHHHHHHCC
T ss_conf 89983323141101021365657876299----------9899------------------------9999999999829
Q ss_pred CCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHH
Q ss_conf 953-2344335645667875466689999997339853422259979999989999999999767139959999945921
Q 000529 308 LDI-CADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAP 386 (1441)
Q Consensus 308 L~~-~~dT~VG~~~~rgLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~ 386 (1441)
|.+ ..|..++ .|||||||||+||++|+.+|+++++||||+|||+.++.+|++.++++.. .+ ++++.++|...
T Consensus 138 l~~~~~~~~p~-----~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g-~til~vtHdl~ 210 (258)
T d1b0ua_ 138 IDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EG-KTMVVVTHEMG 210 (258)
T ss_dssp CCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TT-CCEEEECSCHH
T ss_pred CCHHHHCCCCC-----CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CC-CCEEEEECCHH
T ss_conf 95244306822-----0567788898999998439987885245556887888899876554103-68-83389948999
Q ss_pred HHHHHCCEEEEECCCEEEEECCHHHHH
Q ss_conf 598304949995598299971987799
Q 000529 387 ETYNLFDDIILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 387 e~~~lfD~IilL~~G~ivy~Gp~~~~~ 413 (1441)
++..++|+|++|.+|+++..|+++++.
T Consensus 211 ~~~~~adri~vm~~G~iv~~g~~~ev~ 237 (258)
T d1b0ua_ 211 FARHVSSHVIFLHQGKIEEEGDPEQVF 237 (258)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 999869999999799999984999998
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-45 Score=306.58 Aligned_cols=215 Identities=20% Similarity=0.238 Sum_probs=184.8
Q ss_pred EEEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02670138787244100014888786165205067884881999964699974789973618978862799999959207
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 922 (1441)
.+..+|++.++ +...+|+|||+.+++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 2 ~Lev~nl~k~y-------------g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i 66 (258)
T d1b0ua_ 2 KLHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 66 (258)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEE-------------CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCEEECCEEE
T ss_conf 69999789998-------------99998815066886997999998999829999999974766--7899779999993
Q ss_pred CCC----------------CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC-C
Q ss_conf 711----------------22307899615898898889889999987711999999889999999999983996422-2
Q 000529 923 KQE----------------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-Q 985 (1441)
Q Consensus 923 ~~~----------------~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~-~ 985 (1441)
... ..++.+|||+|+..+.|.+||.|++.+..... ...+..+..+++.++++.++|.+.. +
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~ 144 (258)
T d1b0ua_ 67 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQG 144 (258)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred CCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCCHHHHC
T ss_conf 367752000023517679997454489983323141101021365657876--299989999999999998299524430
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCE
Q ss_conf 33469887767988988999999996199766982999999999999999999999866998999964786899986275
Q 000529 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1065 (1441)
Q Consensus 986 ~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~ 1065 (1441)
... ..|||||+||++||++|+.+|++|++||||+|||+.++..|++.+++++++|.|||+++|++. ++...+|+
T Consensus 145 ~~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adr 218 (258)
T d1b0ua_ 145 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 218 (258)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCE
T ss_conf 682-----205677888989999984399878852455568878888998765541036883389948999-99986999
Q ss_pred EEEEECCCEEEEECCC
Q ss_conf 8799259499997189
Q 000529 1066 LFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1066 illl~~gG~~vy~G~~ 1081 (1441)
+++|.+ |+++..|++
T Consensus 219 i~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 219 VIFLHQ-GKIEEEGDP 233 (258)
T ss_dssp EEEEET-TEEEEEECH
T ss_pred EEEEEC-CEEEEECCH
T ss_conf 999979-999998499
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=309.72 Aligned_cols=215 Identities=24% Similarity=0.337 Sum_probs=183.0
Q ss_pred CEEEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 20267013878724410001488878616520506788488199996469997478997361897886279999995920
Q 000529 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1441)
Q Consensus 842 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 921 (1441)
..+..+|+++++ +...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 5 ~~Lev~~l~k~y-------------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred EEEEEEEEEEEE-------------CCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCC
T ss_conf 079996189998-------------99888830257888997999999999859999999967888--880389842443
Q ss_pred CCCCC---CCE-EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC
Q ss_conf 77112---230-7899615898898889889999987711999999889999999999983-996422233469887767
Q 000529 922 KKQET---FAR-ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV-ELKPLRQSLVGLPGVNGL 996 (1441)
Q Consensus 922 ~~~~~---~~~-~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l-~L~~~~~~~vg~~~~~gl 996 (1441)
..... .++ -++|++|+...++.+||+|++.+.+..+.+ .+..++.++++++.+ ++.+..+..++ .|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLGG-----TL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBSS-----SS
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHCHHHHHHCCHH-----HC
T ss_conf 446608888874235567655457763699999988873278----889999999999874176888758543-----38
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEE
Q ss_conf 98898899999999619976698299999999999999999999986699899996478689998627587992594999
Q 000529 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1441)
Q Consensus 997 SgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~v 1076 (1441)
|||||||+.||++|+.+|++|+|||||+|||+.++..+++.++++++.|.||++++|+.. ++.+.+|++++|.+ |+++
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv 218 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIV 218 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999999999999998299874003988679999999999999999968998999958899-99996999999989-9999
Q ss_pred EECCCC
Q ss_conf 971898
Q 000529 1077 YVGPLG 1082 (1441)
Q Consensus 1077 y~G~~g 1082 (1441)
+.|++.
T Consensus 219 ~~g~~~ 224 (240)
T d1ji0a_ 219 LEGKAS 224 (240)
T ss_dssp EEEEHH
T ss_pred EECCHH
T ss_conf 984899
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.4e-45 Score=306.72 Aligned_cols=208 Identities=24% Similarity=0.360 Sum_probs=144.9
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCC---CCEEEEECCCCCCCCCC
Q ss_conf 323315178995976999986999967999999946979999831099997840799775---52089974799889999
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1441)
Q Consensus 165 ~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~---~~~~aYv~Q~D~~~~~l 241 (1441)
.++|+|||+.+++|+.++|+||||||||||+++|+|.++|+ +|+|.++|.++.+... ++.++||+|++. ++..
T Consensus 31 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~-lf~~ 106 (255)
T d2hyda1 31 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNI-LFSD 106 (255)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCC-CCSS
T ss_pred CCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHHEEEEEECCCC-CCCC
T ss_conf 76064438998399899998899980999999997127863---0001539987530788886341456510156-8998
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999999767217874034556735998841999999858998762001245679999999990995323443356456
Q 000529 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1441)
Q Consensus 242 TVrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~ 321 (1441)
||+||+.|+.... +.++..++....+. .-.+..|+...||.+|+ ..
T Consensus 107 Ti~eNi~~g~~~~-------------------------~~~~~~~al~~~~l--------~~~i~~lp~gl~t~i~~-~g 152 (255)
T d2hyda1 107 TVKENILLGRPTA-------------------------TDEEVVEAAKMANA--------HDFIMNLPQGYDTEVGE-RG 152 (255)
T ss_dssp BHHHHHGGGCSSC-------------------------CHHHHHHHHHHTTC--------HHHHHTSTTGGGCBCCG-GG
T ss_pred CHHHHHHCCCCCC-------------------------CHHHHHHHHHHHCC--------HHHHHHCCCCCCCHHCC-CC
T ss_conf 7999985158679-------------------------99999999999697--------99997362420103338-88
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCC
Q ss_conf 67875466689999997339853422259979999989999999999767139959999945921598304949995598
Q 000529 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1441)
Q Consensus 322 rgLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~IilL~~G 401 (1441)
..||||||||++|||+++.+|++++||||||+||+.+...|++.|+++. .++|+|+. +|.. +....+|+|++|++|
T Consensus 153 ~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~--~~~TvI~i-tH~~-~~~~~~D~ii~l~~G 228 (255)
T d2hyda1 153 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIV-AHRL-STITHADKIVVIENG 228 (255)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEE-CSSG-GGTTTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEE-ECCH-HHHHHCCEEEEEECC
T ss_conf 9849999999999999855998999837654479779999999999875--38889999-6899-999859999999899
Q ss_pred EEEEECCHHHHHH
Q ss_conf 2999719877999
Q 000529 402 QIVYQGPRELVLE 414 (1441)
Q Consensus 402 ~ivy~Gp~~~~~~ 414 (1441)
+++..|+++++++
T Consensus 229 ~iv~~G~~~eLl~ 241 (255)
T d2hyda1 229 HIVETGTHRELIA 241 (255)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999889999986
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.6e-45 Score=303.61 Aligned_cols=210 Identities=24% Similarity=0.416 Sum_probs=157.2
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCC---CCEEEEECCCCCCCCC
Q ss_conf 4323315178995976999986999967999999946979999831099997840799775---5208997479988999
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 164 ~~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~---~~~~aYv~Q~D~~~~~ 240 (1441)
..++|+|||+.+++|+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|+. ++..
T Consensus 27 ~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~l~~ 102 (253)
T d3b60a1 27 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNV-HLFN 102 (253)
T ss_dssp SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSC-CCCS
T ss_pred CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEECC-CCCC
T ss_conf 976353328998599999999999985999999986216888---468987880121110665420687995025-4478
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999976721787403455673599884199999985899876200124567999999999099532344335645
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTVrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~ 320 (1441)
.|+++|+.|+..... .. + ++....+.+ +. .+ .++ .|+...||.+|+ .
T Consensus 103 ~ti~~n~~~~~~~~~--~~-~---~i~~a~~~~------------------~l-----~~-~i~--~l~~gl~t~~~~-~ 149 (253)
T d3b60a1 103 DTVANNIAYARTEEY--SR-E---QIEEAARMA------------------YA-----MD-FIN--KMDNGLDTIIGE-N 149 (253)
T ss_dssp SBHHHHHHTTTTSCC--CH-H---HHHHHHHTT------------------TC-----HH-HHH--HSTTGGGSBCCT-T
T ss_pred CCHHHHHHHCCCCCC--CH-H---HHHHHHHHH------------------HH-----HH-HHH--HCCCCCHHHHCC-C
T ss_conf 620243320572208--99-9---999999998------------------17-----99-997--355441014348-8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECC
Q ss_conf 66787546668999999733985342225997999998999999999976713995999994592159830494999559
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rgLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~IilL~~ 400 (1441)
...|||||||||+|||+|+.+|++++||||||+||+.+...|++.|+++. .++|+|+ ++|... ....+|+|++|.+
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~-itH~l~-~~~~~D~v~vl~~ 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLV-IAHRLS-TIEQADEIVVVED 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH--TTSEEEE-ECSCGG-GTTTCSEEEEEET
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEE-EECCHH-HHHHCCEEEEEEC
T ss_conf 89849999999999999954998899516444589889999999998752--2788999-988799-9985999999989
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 82999719877999
Q 000529 401 GQIVYQGPRELVLE 414 (1441)
Q Consensus 401 G~ivy~Gp~~~~~~ 414 (1441)
|+++.+|+++++++
T Consensus 226 G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 226 GIIVERGTHSELLA 239 (253)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHH
T ss_conf 99999889999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=315.21 Aligned_cols=210 Identities=23% Similarity=0.344 Sum_probs=163.3
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCC---CCEEEEECCCCCCCCC
Q ss_conf 4323315178995976999986999967999999946979999831099997840799775---5208997479988999
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 164 ~~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~---~~~~aYv~Q~D~~~~~ 240 (1441)
..++|+|||+.++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|+..+++
T Consensus 14 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 89 (242)
T d1mv5a_ 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA- 89 (242)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-
T ss_pred CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCCCCCC-
T ss_conf 984142258998599999999999997999999999960989---8779889988442467888743679756654578-
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999976721787403455673599884199999985899876200124567999999999099532344335645
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTVrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~ 320 (1441)
.||+||+.++...... . + ++....+.++. .-....+.+..||.+|+.
T Consensus 90 ~ti~eNi~~~~~~~~~--~-~---~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~i~~~- 136 (242)
T d1mv5a_ 90 GTIRENLTYGLEGDYT--D-E---DLWQVLDLAFA--------------------------RSFVENMPDQLNTEVGER- 136 (242)
T ss_dssp EEHHHHTTSCTTSCSC--H-H---HHHHHHHHHTC--------------------------TTTTTSSTTGGGCEESTT-
T ss_pred CCHHHHEECCCCCCCC--H-H---HHHHHHHHHHH--------------------------HHHHCCCCCCCCCCCCCC-
T ss_conf 5345430124455542--3-5---67789999975--------------------------554203742101523687-
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECC
Q ss_conf 66787546668999999733985342225997999998999999999976713995999994592159830494999559
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rgLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~IilL~~ 400 (1441)
...|||||||||+|||+|+.+|+|++||||||+||+.++.+|++.|+++. .++|+|+ ++|... ....+|+|++|++
T Consensus 137 g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~-itH~l~-~~~~~D~i~vl~~ 212 (242)
T d1mv5a_ 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLV-IAHRLS-TIVDADKIYFIEK 212 (242)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEE-ECCSHH-HHHHCSEEEEEET
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEE-EECCHH-HHHHCCEEEEEEC
T ss_conf 89879999999999999852998999658865569889999988788871--7998999-978799-9984999999989
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 82999719877999
Q 000529 401 GQIVYQGPRELVLE 414 (1441)
Q Consensus 401 G~ivy~Gp~~~~~~ 414 (1441)
|+++.+|+++++++
T Consensus 213 G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 213 GQITGSGKHNELVA 226 (242)
T ss_dssp TEECCCSCHHHHHH
T ss_pred CEEEEECCHHHHHH
T ss_conf 99999999999986
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-45 Score=305.60 Aligned_cols=215 Identities=27% Similarity=0.428 Sum_probs=172.2
Q ss_pred EEEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02670138787244100014888786165205067884881999964699974789973618978862799999959207
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 922 (1441)
.++|+|++|+++. +.+.+|+|||+.+++|+.+||+|+||||||||+++|+|... +.+|+|.+||.+.
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEECC-----------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCEEEECCEEE
T ss_conf 9299999999089-----------99603742489984999999999999989999999973578--8888999999994
Q ss_pred CC---CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH--HHHHC-CCCCCCCCCCCCCCCCCC
Q ss_conf 71---1223078996158988988898899999877119999998899999999--99983-996422233469887767
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEE--VMELV-ELKPLRQSLVGLPGVNGL 996 (1441)
Q Consensus 923 ~~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~--vl~~l-~L~~~~~~~vg~~~~~gl 996 (1441)
.. ..+++.++||+|+..++ ..||+|++.|.. ...+.++.....+. +.+.+ .+..-.++.+|..+ ..|
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g-~~L 140 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN-----PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG-AGL 140 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTS-----TTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTT-TCC
T ss_pred CCCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC-CCC
T ss_conf 4002465535288982446557-840003522357-----554388899999997557888763201344327878-866
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEE
Q ss_conf 98898899999999619976698299999999999999999999986699899996478689998627587992594999
Q 000529 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1441)
Q Consensus 997 SgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~v 1076 (1441)
|||||||++|||+|+.+|+||+||||||+||+.++..|++.++++. +|+|+|+++|+++ ....+|++++|. +|+++
T Consensus 141 SGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~G~Iv 216 (241)
T d2pmka1 141 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVME-KGKIV 216 (241)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEEE-TTEEE
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEE-CCEEE
T ss_conf 9889898754434441651355647765559899999999999985-8998999978899--998499999998-99999
Q ss_pred EECCC
Q ss_conf 97189
Q 000529 1077 YVGPL 1081 (1441)
Q Consensus 1077 y~G~~ 1081 (1441)
..|+.
T Consensus 217 ~~G~~ 221 (241)
T d2pmka1 217 EQGKH 221 (241)
T ss_dssp EEECH
T ss_pred EECCH
T ss_conf 98899
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.7e-44 Score=300.49 Aligned_cols=193 Identities=25% Similarity=0.383 Sum_probs=172.5
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCC-CCCEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 5067884881999964699974789973618978862799999959207711-223078996158988988898899999
Q 000529 874 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLFY 952 (1441)
Q Consensus 874 ~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~~yv~Q~d~~~~~lTv~E~l~f 952 (1441)
|||+.+. ++.++|+||||||||||+++|+|... +.+|+|.++|.+.... ..+|.+|||+|++.+.|.+||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCC--CCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-97999997999809999999973999--89628999999988699899285225231443522015576665
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 87711999999889999999999983996422233469887767988988999999996199766982999999999999
Q 000529 953 SAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032 (1441)
Q Consensus 953 ~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~ 1032 (1441)
+. + ..++.+++++++++++.++|.+..+..+. .||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HH--C---CCCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 32--3---36778899999999986383756657944-----48999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 999999999866-9989999647868999862758799259499997189
Q 000529 1033 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1033 ~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG~~vy~G~~ 1081 (1441)
.+++.++++.+. |.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999998743976999818999-99996999999989-999999069
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-44 Score=300.73 Aligned_cols=216 Identities=23% Similarity=0.324 Sum_probs=173.2
Q ss_pred EEEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02670138787244100014888786165205067884881999964699974789973618978862799999959207
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 922 (1441)
.+.++|++|+++.. ....+|+|||+.+++||.+||+|+||||||||+++|+|... +.+|+|.+||.+.
T Consensus 11 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEECCCC----------CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 69999989988999----------99976744389984998999999999849999999861437--8768998899853
Q ss_pred CC---CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHH-----HHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 71---122307899615898898889889999987711999999889999-----9999999839964222334698877
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKM-----FIEEVMELVELKPLRQSLVGLPGVN 994 (1441)
Q Consensus 923 ~~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~-----~v~~vl~~l~L~~~~~~~vg~~~~~ 994 (1441)
.. ..+++.++||+|++..++ .||+|++.|+... ......... ...+.++ .+.+-.++.++..+ .
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~~-~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQ----KPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEAG-S 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSSC-S
T ss_pred CHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCCC-C
T ss_conf 11013788877654045650027-6346554542101----302788999999998999998--56121113675167-6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCC
Q ss_conf 67988988999999996199766982999999999999999999999866-99899996478689998627587992594
Q 000529 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1441)
Q Consensus 995 glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG 1073 (1441)
.||||||||++|||+|+.+|+|++||||||+||+.+...|++.++++.+. |+|+|+++|+++ ..+.+|++++|++ |
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~-G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEG-G 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEET-T
T ss_pred CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEEEC-C
T ss_conf 689547048998604456870787167576568536899999999976506989999959799--9985999999989-9
Q ss_pred EEEEECCC
Q ss_conf 99997189
Q 000529 1074 REVYVGPL 1081 (1441)
Q Consensus 1074 ~~vy~G~~ 1081 (1441)
+++..|+.
T Consensus 228 ~iv~~Gt~ 235 (251)
T d1jj7a_ 228 AIREGGTH 235 (251)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
T ss_conf 99998899
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.8e-45 Score=305.36 Aligned_cols=211 Identities=27% Similarity=0.437 Sum_probs=170.9
Q ss_pred EEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 26701387872441000148887861652050678848819999646999747899736189788627999999592077
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 923 (1441)
++++|++|+++ +.+.+|+|||+.++||+.+||+||||||||||+++|+|...+ .+|+|.+||.+.+
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCC--CCCEEEECCEEEC
T ss_conf 79998899879------------998414225899859999999999999799999999996098--9877988998844
Q ss_pred C---CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCCCCCCC
Q ss_conf 1---1223078996158988988898899999877119999998899999999999839-------96422233469887
Q 000529 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE-------LKPLRQSLVGLPGV 993 (1441)
Q Consensus 924 ~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~-------L~~~~~~~vg~~~~ 993 (1441)
. ..+++.++||+|++.+++. |++|++.+... ...+.+. +++.++..+ +.+..++.+|..+.
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 138 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERGV 138 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTSB
T ss_pred CCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCCC----CCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 24678887436797566545785-34543012445----5542356----778999997555420374210152368789
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCC
Q ss_conf 76798898899999999619976698299999999999999999999986699899996478689998627587992594
Q 000529 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1441)
Q Consensus 994 ~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG 1073 (1441)
.||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++. +|+|+|+++|+++ ....+|++++|.+ |
T Consensus 139 -~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G 213 (242)
T d1mv5a_ 139 -KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (242)
T ss_dssp -CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred -CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEEC-C
T ss_conf -879999999999999852998999658865569889999988788871-7998999978799--9984999999989-9
Q ss_pred EEEEECCCC
Q ss_conf 999971898
Q 000529 1074 REVYVGPLG 1082 (1441)
Q Consensus 1074 ~~vy~G~~g 1082 (1441)
+++..|+..
T Consensus 214 ~iv~~G~~~ 222 (242)
T d1mv5a_ 214 QITGSGKHN 222 (242)
T ss_dssp EECCCSCHH
T ss_pred EEEEECCHH
T ss_conf 999999999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.6e-43 Score=294.21 Aligned_cols=212 Identities=25% Similarity=0.339 Sum_probs=172.4
Q ss_pred EEEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02670138787244100014888786165205067884881999964699974789973618978862799999959207
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 922 (1441)
.+.++|++|+++. ....+|+|||+.+++|+.+||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 13 ~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 79 (253)
T d3b60a1 13 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDL 79 (253)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEET
T ss_pred EEEEEEEEEEECC-----------CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCCCC
T ss_conf 7999988999299-----------99763533289985999999999999859999999862168--8846898788012
Q ss_pred CC---CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCC
Q ss_conf 71---12230789961589889888988999998771199999988999999999998399642-------223346988
Q 000529 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-------RQSLVGLPG 992 (1441)
Q Consensus 923 ~~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~~ 992 (1441)
.. ..+++.++||+|++.++. .|+++++.+.. +...+.++ ++++++..++.+. .++.+|..+
T Consensus 80 ~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~~~~~~----i~~a~~~~~l~~~i~~l~~gl~t~~~~~~ 150 (253)
T d3b60a1 80 REYTLASLRNQVALVSQNVHLFN-DTVANNIAYAR----TEEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIGENG 150 (253)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTT----TSCCCHHH----HHHHHHTTTCHHHHHHSTTGGGSBCCTTS
T ss_pred CHHHHHHHHHEEEEEEECCCCCC-CCHHHHHHHCC----CCCCCHHH----HHHHHHHHHHHHHHHHCCCCCHHHHCCCC
T ss_conf 11106654206879950254478-62024332057----22089999----99999998179999735544101434888
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECC
Q ss_conf 77679889889999999961997669829999999999999999999998669989999647868999862758799259
Q 000529 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1441)
Q Consensus 993 ~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~g 1072 (1441)
..||||||||++|||+|+.+|+||+||||||+||+.++..|++.|+++. +++|+|+++|+++ ..+.+|++++|.+
T Consensus 151 -~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~v~vl~~- 225 (253)
T d3b60a1 151 -VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADEIVVVED- 225 (253)
T ss_dssp -CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSEEEEEET-
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEEC-
T ss_conf -9849999999999999954998899516444589889999999998752-2788999988799--9985999999989-
Q ss_pred CEEEEECCC
Q ss_conf 499997189
Q 000529 1073 GREVYVGPL 1081 (1441)
Q Consensus 1073 G~~vy~G~~ 1081 (1441)
|+++..|+.
T Consensus 226 G~Iv~~G~~ 234 (253)
T d3b60a1 226 GIIVERGTH 234 (253)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2e-44 Score=300.20 Aligned_cols=212 Identities=25% Similarity=0.391 Sum_probs=174.5
Q ss_pred CEEEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 20267013878724410001488878616520506788488199996469997478997361897886279999995920
Q 000529 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1441)
Q Consensus 842 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 921 (1441)
..+.++|++|+++. ....+|+|||+.+++|+.+||+|+||||||||+++|+|... +.+|+|.++|.+
T Consensus 15 g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 81 (255)
T d2hyda1 15 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHN 81 (255)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEE
T ss_pred CEEEEEEEEEEECC-----------CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEE
T ss_conf 87999988999599-----------99760644389983998999988999809999999971278--630001539987
Q ss_pred CCC---CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCC
Q ss_conf 771---1223078996158988988898899999877119999998899999999999839964-------222334698
Q 000529 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-------LRQSLVGLP 991 (1441)
Q Consensus 922 ~~~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~ 991 (1441)
... ..+++.++||+|++.+++ .||+|++.|+. ...+.++ +.++++..++.+ -.++.+|..
T Consensus 82 i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~-----~~~~~~~----~~~al~~~~l~~~i~~lp~gl~t~i~~~ 151 (255)
T d2hyda1 82 IKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR-----PTATDEE----VVEAAKMANAHDFIMNLPQGYDTEVGER 151 (255)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC-----SSCCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred CCCCCHHHHHHEEEEEECCCCCCC-CCHHHHHHCCC-----CCCCHHH----HHHHHHHHCCHHHHHHCCCCCCCHHCCC
T ss_conf 530788886341456510156899-87999985158-----6799999----9999999697999973624201033388
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEEC
Q ss_conf 87767988988999999996199766982999999999999999999999866998999964786899986275879925
Q 000529 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1441)
Q Consensus 992 ~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~ 1071 (1441)
+ ..||||||||++|||+|+.+|+|++||||||+||+.++..|++.++++. .++|+|+++|+++ ....+|++++|+
T Consensus 152 g-~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l~- 226 (255)
T d2hyda1 152 G-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVIE- 226 (255)
T ss_dssp G-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEEE-
T ss_pred C-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEE-
T ss_conf 8-9849999999999999855998999837654479779999999999875-3888999968999--998599999998-
Q ss_pred CCEEEEECCC
Q ss_conf 9499997189
Q 000529 1072 GGREVYVGPL 1081 (1441)
Q Consensus 1072 gG~~vy~G~~ 1081 (1441)
+|+++..|+.
T Consensus 227 ~G~iv~~G~~ 236 (255)
T d2hyda1 227 NGHIVETGTH 236 (255)
T ss_dssp TTEEEEEECH
T ss_pred CCEEEEECCH
T ss_conf 9999998899
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.4e-43 Score=294.63 Aligned_cols=198 Identities=22% Similarity=0.329 Sum_probs=156.2
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 32331517899597699998699996799999994697999983109999784079977552089974799889999999
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1441)
Q Consensus 165 ~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~~~~~aYv~Q~D~~~~~lTVr 244 (1441)
.++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|+...++ .||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCS-EEHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECCCCCCC-CEEE
T ss_conf 76773759998599999999899982999999995797478---82899999----------9999816430267-6032
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999767217874034556735998841999999858998762001245679999999990995323443356456678
Q 000529 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1441)
Q Consensus 245 EtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rgL 324 (1441)
||+.|+..... .+++. ..+. .+....+..+....||.+|. ....|
T Consensus 115 eni~~~~~~~~--~~~~~------~~~~--------------------------~~~~~~i~~l~~~~~~~~~~-~~~~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYDE--YRYKS------VVKA--------------------------CQLQQDITKFAEQDNTVLGE-GGVTL 159 (281)
T ss_dssp HHHTTTSCCCH--HHHHH------HHHH--------------------------TTCHHHHTTSTTGGGCEECT-TCTTS
T ss_pred CCCCCCCCCCC--HHHHH------HHHH--------------------------HHHHHHHHHCHHHHHHHHHH-HCCCC
T ss_conf 14203334560--57999------9999--------------------------77699998461233235555-42377
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEEE
Q ss_conf 75466689999997339853422259979999989999999999767139959999945921598304949995598299
Q 000529 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404 (1441)
Q Consensus 325 SGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~IilL~~G~iv 404 (1441)
||||||||++|++|+.+|++++|||||++||+.+..+|++.+.... ..++|+|+ ++|.. +....+|+|++|++|+++
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~-~~~~tvi~-itH~~-~~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRIL-VTSKM-EHLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC-TTTSEEEE-ECSCH-HHHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEE-EECHH-HHHHHCCEEEEEECCEEE
T ss_conf 9999999999999986963513338554489899999999999886-28999999-92528-999859999999899999
Q ss_pred EECCHHHHHH
Q ss_conf 9719877999
Q 000529 405 YQGPRELVLE 414 (1441)
Q Consensus 405 y~Gp~~~~~~ 414 (1441)
++|+++++..
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHC
T ss_conf 9878999960
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-40 Score=274.94 Aligned_cols=193 Identities=23% Similarity=0.359 Sum_probs=104.2
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCC---CCCEEEEEECCCCCCCCCCCHH
Q ss_conf 5205067884881999964699974789973618978862799999959207711---2230789961589889888988
Q 000529 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE---TFARISGYCEQNDIHSPFVTVY 947 (1441)
Q Consensus 871 iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~---~~~~~~~yv~Q~d~~~~~lTv~ 947 (1441)
.|++||+.+++||++||+||||||||||+++|+|... .+|+|.++|.+.... ..+...+|+.|+.......++.
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHH
T ss_conf 5558888994898999998999809999999948879---9559999999998699899986402451213577442098
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCEEEEE
Q ss_conf 99999877119999998899999999999839964222334698877679889889999999961-------99766982
Q 000529 948 ESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMD 1020 (1441)
Q Consensus 948 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~-------~p~il~lD 1020 (1441)
+.+.+...- ..+.+.++++++.+++.+..+..++ .||||||||+.||++|+. +|+||+||
T Consensus 91 ~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQHD--------KTRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCSC--------TTCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHCCCH--------HHHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 876410014--------6689999999986598767676844-----569988999999999985171338998899971
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 9999999999999999999998669989999647868999862758799259499997189
Q 000529 1021 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1021 EPTsGLD~~~a~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~vy~G~~ 1081 (1441)
|||+|||+.++..+++.++++++.|.|||+++|+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~-~G~iv~~G~~ 216 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGRR 216 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEE-TTEECCCSBH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECCH
T ss_conf 877778989999999999999867999999967799-9999799999997-9989998899
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.7e-40 Score=274.72 Aligned_cols=191 Identities=19% Similarity=0.354 Sum_probs=150.7
Q ss_pred EEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCHHH
Q ss_conf 16520506788488199996469997478997361897886279999995920771122307899615898898889889
Q 000529 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948 (1441)
Q Consensus 869 ~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E 948 (1441)
.++|+|||+.+++|+++||+||||||||||+++|+|... +.+|.|.++|. ++||+|+..+.+ .||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCS-EEHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCE----------EEEEECCCCCCC-CEEEC
T ss_conf 767737599985999999998999829999999957974--78828999999----------999816430267-60321
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHH---HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 9999877119999998899999999---9998399642223346988776798898899999999619976698299999
Q 000529 949 SLFYSAWLRLPPEVNSETRKMFIEE---VMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025 (1441)
Q Consensus 949 ~l~f~a~lr~~~~~~~~~~~~~v~~---vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsG 1025 (1441)
++.|+. ...........+. ......+.+..++.+|..+ ..||||||||++||++|+.+|+||+|||||++
T Consensus 116 ni~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-~~LSgGqkQRv~lARaL~~~p~illLDEPts~ 188 (281)
T d1r0wa_ 116 NIIFGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDADLYLLDSPFGY 188 (281)
T ss_dssp HHTTTS------CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTC-TTSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred CCCCCC------CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCC
T ss_conf 420333------45605799999997769999846123323555542-37799999999999999869635133385544
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCC
Q ss_conf 999999999999999986699899996478689998627587992594999971898
Q 000529 1026 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1441)
Q Consensus 1026 LD~~~a~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~vy~G~~g 1082 (1441)
||+.+...+++.+......++|+|+++|++ +....+|++++|.+ |++++.|+..
T Consensus 189 LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~-G~i~~~Gt~~ 242 (281)
T d1r0wa_ 189 LDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQ-GSSYFYGTFS 242 (281)
T ss_dssp SCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEET-TEEEEEECHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCEEEEEEC-CEEEEECCHH
T ss_conf 898999999999998862899999992528--99985999999989-9999987899
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.2e-40 Score=271.62 Aligned_cols=198 Identities=23% Similarity=0.322 Sum_probs=167.0
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCC---CEEEEECCCCCCCCCCC
Q ss_conf 233151789959769999869999679999999469799998310999978407997755---20899747998899999
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE---RTAAYISQHDNHIGEMT 242 (1441)
Q Consensus 166 ~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~~---~~~aYv~Q~D~~~~~lT 242 (1441)
+.|++||+.+++||+++|+||||||||||+++|+|.. ++ +|+|.++|.++....++ ...+|++|+.......+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CC---CEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCC
T ss_conf 1555888899489899999899980999999994887-99---5599999999986998999864024512135774420
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999997672178740345567359988419999998589987620012456799999999909953234433564566
Q 000529 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1441)
Q Consensus 243 VrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~r 322 (1441)
+.+.+.+...-+. ....++.+++.++|++..+..+++
T Consensus 89 v~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~---- 125 (231)
T d1l7vc_ 89 VWHYLTLHQHDKT---------------------------------------RTELLNDVAGALALDDKLGRSTNQ---- 125 (231)
T ss_dssp HHHHHHHHCSCTT---------------------------------------CHHHHHHHHHHTTCTTTTTSBGGG----
T ss_pred HHHHHHHCCCHHH---------------------------------------HHHHHHHHHHHCCCHHHHCCCHHH----
T ss_conf 9887641001466---------------------------------------899999999865987676768445----
Q ss_pred CCCHHHHHHHHHHHHHHC-------CCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEE
Q ss_conf 787546668999999733-------9853422259979999989999999999767139959999945921598304949
Q 000529 323 GVSGGQKKRVTTGEMMVG-------PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1441)
Q Consensus 323 gLSGGQKKRvsiaeaLv~-------~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~I 395 (1441)
|||||||||++|++++. +|++++|||||+|||..++..+.+.++++.. .+.| |+.++|...++.+++|+|
T Consensus 126 -LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~t-ii~vtHdl~~~~~~~dri 202 (231)
T d1l7vc_ 126 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLA-IVMSSHDLNHTLRHAHRA 202 (231)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCE-EEECCCCHHHHHHHCSBC
T ss_pred -CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCE-EEEEECCHHHHHHHCCEE
T ss_conf -6998899999999998517133899889997187777898999999999999986-7999-999967799999979999
Q ss_pred EEECCCEEEEECCHHHHH
Q ss_conf 995598299971987799
Q 000529 396 ILLSDGQIVYQGPRELVL 413 (1441)
Q Consensus 396 ilL~~G~ivy~Gp~~~~~ 413 (1441)
++|++|+++++|+++++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHH
T ss_conf 999799899988999981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.1e-37 Score=254.76 Aligned_cols=194 Identities=21% Similarity=0.274 Sum_probs=108.8
Q ss_pred EEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 26701387872441000148887861652050678848819999646999747899736189788627999999592077
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 923 (1441)
++.+|+++.++ +.+|+|+|+.+++|++++|+||||||||||+++|+|..+ +.+|+|.+||.+..
T Consensus 3 lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i~ 66 (200)
T d1sgwa_ 3 LEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT 66 (200)
T ss_dssp EEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG
T ss_pred EEEEEEEEEEC--------------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEHH
T ss_conf 99998999939--------------928842088985998999999999719999999966205--67788999989626
Q ss_pred CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 11223078996158988988898899999877119999998899999999999839964222334698877679889889
Q 000529 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003 (1441)
Q Consensus 924 ~~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkR 1003 (1441)
. .+..++|++|+..+...+|++|.+.+.+.++... .+.+ .+.+.++.+++.++.. .+ ..||||||||
T Consensus 67 ~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~-~~-----~~LSgG~~qr 133 (200)
T d1sgwa_ 67 K--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNKN----EIMDALESVEVLDLKK-KL-----GELSQGTIRR 133 (200)
T ss_dssp G--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCHH----HHHHHHHHTTCCCTTS-BG-----GGSCHHHHHH
T ss_pred H--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC-CCHH----HHHHHHHHCCCCCCCC-CC-----CCCCCCHHHH
T ss_conf 7--3670899950135788828999999999754886-3799----9999998748856301-26-----8689718888
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE
Q ss_conf 9999999619976698299999999999999999999986699899996478689998627587992
Q 000529 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 1004 l~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~ 1070 (1441)
+.||++|+.+|++++|||||+|||+.++..+++.++++.+.+.++|+++|+. .+.+|.+..|.
T Consensus 134 v~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~ 196 (200)
T d1sgwa_ 134 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLH 196 (200)
T ss_dssp HHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGG
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH----HHHCCHHHHEE
T ss_conf 9999988649989998686201699999999999999986799999999162----54416123401
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.2e-37 Score=256.28 Aligned_cols=184 Identities=19% Similarity=0.264 Sum_probs=151.3
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 32331517899597699998699996799999994697999983109999784079977552089974799889999999
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1441)
Q Consensus 165 ~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~~~~~aYv~Q~D~~~~~lTVr 244 (1441)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.+||.++.+. +..++|++|+..+...+|++
T Consensus 14 ~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~ 88 (200)
T d1sgwa_ 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVE 88 (200)
T ss_dssp SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHHH--CCCEEEEEECCCCCCCCCHH
T ss_conf 92884208898599899999999971999999996620567---78899998962673--67089995013578882899
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999767217874034556735998841999999858998762001245679999999990995323443356456678
Q 000529 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1441)
Q Consensus 245 EtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rgL 324 (1441)
|++.+.+...+.... + ..+...++.+++.+. +..++ .|
T Consensus 89 ~~l~~~~~~~~~~~~--------~----------------------------~~~~~~l~~~~~~~~-~~~~~-----~L 126 (200)
T d1sgwa_ 89 DYLKAVASLYGVKVN--------K----------------------------NEIMDALESVEVLDL-KKKLG-----EL 126 (200)
T ss_dssp HHHHHHHHHTTCCCC--------H----------------------------HHHHHHHHHTTCCCT-TSBGG-----GS
T ss_pred HHHHHHHHHCCCCCC--------H----------------------------HHHHHHHHHCCCCCC-CCCCC-----CC
T ss_conf 999999975488637--------9----------------------------999999987488563-01268-----68
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECC
Q ss_conf 7546668999999733985342225997999998999999999976713995999994592159830494999559
Q 000529 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 325 SGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~IilL~~ 400 (1441)
|||||||+.+|++++.+|++++|||||+|||..+...+++.++++.+. +++++++.||.. +++|.+..|.+
T Consensus 127 SgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECHH----HHCCHHHHEEE
T ss_conf 971888899999886499899986862016999999999999999867-999999991625----44161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.35 E-value=9e-15 Score=108.83 Aligned_cols=79 Identities=14% Similarity=0.026 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECCCE
Q ss_conf 798898899999999619976698299999999999999999999986-6998999964786899986275879925949
Q 000529 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1441)
Q Consensus 996 lSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~illl~~gG~ 1074 (1441)
+++|++++..++.++..+|+++++|||+...+ .....+..+.++.+ .+.++++++|+.+ .....|++..+. +|+
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~ 156 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIRD--VHPLVKEIRRLP-GAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSSC--CSHHHHHHHTCT-TCE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHHHHCCCCCEEEEEECCHH--HHHHHCEEEEEE-CCE
T ss_conf 53201378999999740997423027773100--4579999999875057978999974477--898636599871-999
Q ss_pred EEEEC
Q ss_conf 99971
Q 000529 1075 EVYVG 1079 (1441)
Q Consensus 1075 ~vy~G 1079 (1441)
++.-+
T Consensus 157 i~~v~ 161 (178)
T d1ye8a1 157 LIELT 161 (178)
T ss_dssp EEECC
T ss_pred EEEEC
T ss_conf 99989
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.29 E-value=5e-13 Score=97.59 Aligned_cols=156 Identities=13% Similarity=0.073 Sum_probs=95.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCCCEEEEECC--CCC--CCCCCCHHHHHHHHHHHCCC
Q ss_conf 99986999967999999946979999831099997840799775520899747--998--89999999999997672178
Q 000529 181 TLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQ--HDN--HIGEMTVRETLAFAARCQGV 256 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~~~~~aYv~Q--~D~--~~~~lTVrEtL~Faa~~~~~ 256 (1441)
.+|.||||||||||+++|+|.+++. .|.+...+.+..... +..++..+ .+. .....+..+. .+.
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--- 70 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETK--KRTGFRIITTEGKKKIFSSKFFTSK----KLV--- 70 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC--------CCEEEEEETTCCEEEEEETTCCCS----SEE---
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCC---CCEEEECCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH----HHH---
T ss_conf 9999899938999999998148888---646998771328888--7653112336677788754113455----443---
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 74034556735998841999999858998762001245679999999990995323443356456678754666899999
Q 000529 257 GTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE 336 (1441)
Q Consensus 257 ~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rgLSGGQKKRvsiae 336 (1441)
++ + ..++ ....+++|+++|..++.
T Consensus 71 -------------~~----------------------------------~----~~~~-----~~~~~~~~~~~~~~l~~ 94 (178)
T d1ye8a1 71 -------------GS----------------------------------Y----GVNV-----QYFEELAIPILERAYRE 94 (178)
T ss_dssp -------------TT----------------------------------E----EECH-----HHHHHHHHHHHHHHHHH
T ss_pred -------------HH----------------------------------H----HCCC-----CHHHHHHHHHHHHHHHH
T ss_conf -------------02----------------------------------3----0376-----25665320137899999
Q ss_pred HHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 973398534222599799999899999999997671399599999459215983049499955982999719
Q 000529 337 MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 408 (1441)
Q Consensus 337 aLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~IilL~~G~ivy~Gp 408 (1441)
++...|+++++|||... .......+..+.+.....+.+++++.|+ .+...+.|++..+.+|+++.-++
T Consensus 95 ~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~~~~~~il~~~h~--~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 95 AKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMHDPNVNVVATIPI--RDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHTCTTSEEEEECCS--SCCSHHHHHHHTCTTCEEEECCT
T ss_pred HHHCCCCCEEECCCCCC--CHHHHHHHHHHHHHHCCCCCEEEEEECC--HHHHHHHCEEEEEECCEEEEECC
T ss_conf 97409974230277731--0045799999998750579789999744--77898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.08 E-value=2.2e-08 Score=67.60 Aligned_cols=71 Identities=21% Similarity=0.221 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHHH----HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEE
Q ss_conf 67988988999999996----199766982999999999999999999999866998999964786899986275879
Q 000529 995 GLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1068 (1441)
Q Consensus 995 glSgGqrkRl~ia~~L~----~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~ill 1068 (1441)
.+|.|||+.+.++..+. .++++++.|||-++|++.....+.+.|++.++ +.-|++|+|.|. +.+.+|++..
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCCEEE
T ss_conf 02577766777776655654226744554320335797899999999998554-887999989889--9973242899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.94 E-value=5.4e-08 Score=65.10 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=59.8
Q ss_pred CCCCCHHHHHHHHHHHH----HHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEE
Q ss_conf 66787546668999999----73398534222599799999899999999997671399599999459215983049499
Q 000529 321 RRGVSGGQKKRVTTGEM----MVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1441)
Q Consensus 321 ~rgLSGGQKKRvsiaea----Lv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~Ii 396 (1441)
...+|+|||....++.. ...++++++.|||-++|++.....+.+.|+..+. +.-+++ +.|+|++.+.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~Qvii--tTHsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIV--ITHNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEE--ECCCTTGGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCEEEE--EECCHHHHHHCCCEE
T ss_conf 1102577766777776655654226744554320335797899999999998554--887999--989889997324289
Q ss_pred EE--CCC
Q ss_conf 95--598
Q 000529 397 LL--SDG 401 (1441)
Q Consensus 397 lL--~~G 401 (1441)
.+ .+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEECC
T ss_conf 9999699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.85 E-value=7.5e-09 Score=70.62 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE
Q ss_conf 6798898899999999----619976698299999999999999999999986699899996478689998627587992
Q 000529 995 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1441)
Q Consensus 995 glSgGqrkRl~ia~~L----~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~ 1070 (1441)
-+|||||.++++|.-+ ..+++++++|||+++||+.....+.+.|++++..+.-+|+|+|+| .+.+..|..+...
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V~ 409 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGVY 409 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCCEEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878--9997366179999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=1.9e-07 Score=61.61 Aligned_cols=74 Identities=16% Similarity=0.279 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHHH----HCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEE
Q ss_conf 67875466689999997----33985342225997999998999999999976713995999994592159830494999
Q 000529 322 RGVSGGQKKRVTTGEMM----VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1441)
Q Consensus 322 rgLSGGQKKRvsiaeaL----v~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~Iil 397 (1441)
.-+|||||.++++|-.+ +.+++++++|||.++||+.....+.+.|++.+. ..+-++.++ |.|++.+.+|.++.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~--~~~Q~I~iT-H~~~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVIS-LKNTMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEEC-SCHHHHTTCSEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEEE-CCHHHHHHCCCEEE
T ss_conf 332230479999999999954799977999688777899999999999999728--998899995-87899973661799
Q ss_pred E
Q ss_conf 5
Q 000529 398 L 398 (1441)
Q Consensus 398 L 398 (1441)
.
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.98 E-value=0.00012 Score=43.43 Aligned_cols=32 Identities=28% Similarity=0.329 Sum_probs=15.4
Q ss_pred EECEEEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 20506788488199996469997478997361
Q 000529 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 903 (1441)
Q Consensus 872 L~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~ 903 (1441)
|+++.+-++||+++.|.|++|+||||++.-++
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 88874697898089999479997999999999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.88 E-value=9.9e-05 Score=44.06 Aligned_cols=62 Identities=8% Similarity=0.156 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 898899999999619976698299999999999999-9999999866998999964786899986
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV-MRTVRNTVDTGRTVVCTIHQPSIDIFEA 1062 (1441)
Q Consensus 999 GqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i-~~~l~~~~~~g~tvi~t~Hqps~~i~~~ 1062 (1441)
.|.+++.-....+.+.+++++||..+|-|+.....+ ...+..+.+.+..+++++|.. ++.++
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHHH
T ss_conf 8678898775028977278554545686233200258888888862376137865202--33322
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.81 E-value=0.0004 Score=40.18 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=29.8
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 3233151789959769999869999679999999469
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 165 ~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+-|+++.+=++||++++|.|+||+|||||+.-++-.
T Consensus 22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 3668887469789808999947999799999999972
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.74 E-value=0.00039 Score=40.24 Aligned_cols=61 Identities=13% Similarity=0.050 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEEECCHHHHHHH
Q ss_conf 6668999999733985342225997999998999999-999976713995999994592159830
Q 000529 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CFKQNIHINSGTAVISLLQPAPETYNL 391 (1441)
Q Consensus 328 QKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~-~Lr~~~~~~~~Tviisl~Qp~~e~~~l 391 (1441)
|-+|++-.-...+..+++++||+.+|=|+.....+.. .+..+.. .+.+++++.|++ +.-.+
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCH--HHHTC
T ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHH-CCCCEEEEEECH--HHHHH
T ss_conf 678898775028977278554545686233200258888888862-376137865202--33322
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.71 E-value=0.00093 Score=37.79 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=13.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8995976999986999967999999946
Q 000529 173 GIVKPGRLTLLLGPPSSGKTTLLLALAG 200 (1441)
Q Consensus 173 g~i~pGelt~llGpsGSGKSTLL~~LaG 200 (1441)
|-+.+|++++|.||||||||+|+.-++-
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 8986984999991899999999999999
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=0.00019 Score=42.23 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHC-CCEEEEEECCCCH
Q ss_conf 89889999999961997669829999999999999999-99999866-9989999647868
Q 000529 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDT-GRTVVCTIHQPSI 1057 (1441)
Q Consensus 999 GqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~-~l~~~~~~-g~tvi~t~Hqps~ 1057 (1441)
.|.+|+.-......+.+++++||+-+|=++.....+.. .+..+... +..+++|+|....
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 9999999999745466088532223587745666789876454320454428985246877
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.62 E-value=0.0009 Score=37.87 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=13.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 976999986999967999999946
Q 000529 177 PGRLTLLLGPPSSGKTTLLLALAG 200 (1441)
Q Consensus 177 pGelt~llGpsGSGKSTLL~~LaG 200 (1441)
||++++|.|+||+|||||+..|+-
T Consensus 28 pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 28 AGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 895899992899989999999999
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=0.0008 Score=38.19 Aligned_cols=57 Identities=11% Similarity=0.056 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEEECC
Q ss_conf 6668999999733985342225997999998999999-99997671399599999459
Q 000529 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CFKQNIHINSGTAVISLLQP 384 (1441)
Q Consensus 328 QKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~-~Lr~~~~~~~~Tviisl~Qp 384 (1441)
|-+|++-.-.-.++.+++++||+-+|=++.....+.. .+..+.......++++.|.+
T Consensus 107 E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 107 EMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 9999999997454660885322235877456667898764543204544289852468
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.52 E-value=3.6e-05 Score=46.93 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=22.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf 976999986999967999999946979999831099
Q 000529 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRV 212 (1441)
Q Consensus 177 pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V 212 (1441)
+|+.++++|+||.|||||+|+|.|...-. +|+|
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~v 126 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEV 126 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH---CCCC
T ss_conf 69808997889877888877305355501---0684
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.23 E-value=0.00012 Score=43.45 Aligned_cols=27 Identities=44% Similarity=0.567 Sum_probs=20.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 976999986999967999999946979
Q 000529 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 177 pGelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.|++.+|.|||||||||+.+.|+.++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.13 E-value=3.9e-05 Score=46.66 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=23.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 9769999869999679999999469799998310999
Q 000529 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVT 213 (1441)
Q Consensus 177 pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~ 213 (1441)
.|+.++++|+||.|||||+|+|.|...-. +|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH---HCCCC
T ss_conf 35649998778734878987515176764---03555
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.00012 Score=43.41 Aligned_cols=25 Identities=36% Similarity=0.304 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999679999999469799
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l~~ 204 (1441)
++++.|+||||||||++.|+.++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.06 E-value=0.00014 Score=43.07 Aligned_cols=26 Identities=35% Similarity=0.700 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 76999986999967999999946979
Q 000529 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 178 Gelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
|++.+|+||||||||||++.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00014 Score=43.03 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=21.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 976999986999967999999946979
Q 000529 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 177 pGelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.+.+.+|+|||||||||+.+.|+.++.
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 871899989999898999999999869
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.00033 Score=40.69 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=23.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899597699998699996799999994697
Q 000529 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 173 g~i~pGelt~llGpsGSGKSTLL~~LaG~l 202 (1441)
|-++||+++.|.||||||||||+.-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 898599799999589999999999999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.94 E-value=0.0003 Score=40.97 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88199996469997478997361897
Q 000529 881 PGVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 881 pG~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
+|..++++|+||.|||||+|.|.+..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 69808997889877888877305355
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.0082 Score=31.68 Aligned_cols=154 Identities=20% Similarity=0.211 Sum_probs=74.4
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCHHHH
Q ss_conf 65205067884881999964699974789973618978862799999959207711223078996158988988898899
Q 000529 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYES 949 (1441)
Q Consensus 870 ~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E~ 949 (1441)
.++.+ +.||+++.|.|++|+|||||+--|+-....|.. ..+..... ...+-|+..++.. -.+.+-
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~-----~~~~~~~~---~~~vl~~~~E~~~---~~~~~R 85 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPD-----LLEVGELP---TGPVIYLPAEDPP---TAIHHR 85 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCC-----TTCCCCCC---CCCEEEEESSSCH---HHHHHH
T ss_pred HHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC-----CCCCCCCC---CCCEEEEECCCHH---HHHHHH
T ss_conf 98689----558958999928999899999999999976997-----21112357---8736898512349---999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC---C-
Q ss_conf 999877119999998899999999999839964222334698877679889889999999961997669829999---9-
Q 000529 950 LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS---G- 1025 (1441)
Q Consensus 950 l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTs---G- 1025 (1441)
+.+.. .+.+..... .....+.+.+..+... ....-..... -.....+|+++++|--+. |
T Consensus 86 --l~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~lvviD~l~~~~~~~ 148 (274)
T d1nlfa_ 86 --LHALG---AHLSAEERQ----AVADGLLIQPLIGSLP-----NIMAPEWFDG---LKRAAEGRRLMVLDTLRRFHIEE 148 (274)
T ss_dssp --HHHHH---TTSCHHHHH----HHHHHEEECCCTTSCC-----CTTSHHHHHH---HHHHHTTCSEEEEECGGGGCCSC
T ss_pred --HHHHH---HCCCHHHHH----CCCCCCEECCCCCCCC-----HHHHHHHHHH---HHHHCCCCCEEECCCHHHHCCCC
T ss_conf --99986---236866653----1233323214567420-----3578999999---88752676589628135422665
Q ss_pred -CCHHHHHHHHHHHHHHHHC-CCEEEEEECCC
Q ss_conf -9999999999999999866-99899996478
Q 000529 1026 -LDARAAAIVMRTVRNTVDT-GRTVVCTIHQP 1055 (1441)
Q Consensus 1026 -LD~~~a~~i~~~l~~~~~~-g~tvi~t~Hqp 1055 (1441)
-|......+++.++.++.. |++|+++.|..
T Consensus 149 ~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 149 ENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 23225689999887777644797540131005
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.83 E-value=0.00056 Score=39.22 Aligned_cols=53 Identities=25% Similarity=0.368 Sum_probs=37.3
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEE
Q ss_conf 99999619976698299999999999999999999986699899996478689998627587
Q 000529 1006 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1067 (1441)
Q Consensus 1006 ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~il 1067 (1441)
+..+|-.+|++++..|.. |..++...+ +.+.+|.-|+.|+|-.+ .+..+++++
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~Rl~ 272 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTRLR 272 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHHHH
T ss_pred HHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCC--HHHHHHHHH
T ss_conf 999984138889845768---759999999----99724985899833676--676654321
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.00042 Score=40.03 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=15.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 97699998699996799999994697
Q 000529 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 177 pGelt~llGpsGSGKSTLL~~LaG~l 202 (1441)
+|.+.+|+||||||||||.+.|.-+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 98099999999999999999998639
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.82 E-value=0.00034 Score=40.60 Aligned_cols=26 Identities=38% Similarity=0.404 Sum_probs=22.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 69999869999679999999469799
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~l~~ 204 (1441)
+..+|.||||+|||||.++|++.+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.81 E-value=0.01 Score=31.06 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=21.5
Q ss_pred EECE-EEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 2050-6788488199996469997478997361
Q 000529 872 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLA 903 (1441)
Q Consensus 872 L~~i-s~~i~pG~~~ai~G~sGaGKTTLl~~L~ 903 (1441)
|+++ .|-+++|+++.|.|++|+|||+|..-++
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 988556899698399999479999999999999
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.77 E-value=0.00028 Score=41.19 Aligned_cols=26 Identities=35% Similarity=0.347 Sum_probs=15.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 97699998699996799999994697
Q 000529 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 177 pGelt~llGpsGSGKSTLL~~LaG~l 202 (1441)
+|.+..|.|+|||||||+-++|+-++
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97699988999999999999999998
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.77 E-value=0.00036 Score=40.43 Aligned_cols=25 Identities=40% Similarity=0.646 Sum_probs=18.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999986999967999999946979
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.+.+|.|||||||||+.+.|+.+++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.77 E-value=0.011 Score=30.88 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=27.4
Q ss_pred EEEECE-EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 233151-78995976999986999967999999946
Q 000529 166 TILKDV-SGIVKPGRLTLLLGPPSSGKTTLLLALAG 200 (1441)
Q Consensus 166 ~iL~~v-sg~i~pGelt~llGpsGSGKSTLL~~LaG 200 (1441)
+-|+++ +|-+++|+++.|.|+||+|||+|..-++.
T Consensus 13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 779885568996983999994799999999999999
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.77 E-value=0.011 Score=30.87 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=24.6
Q ss_pred ECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 0506788488199996469997478997361897
Q 000529 873 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 873 ~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.-+...++.+.-+.|.|+.||||||||++|.+..
T Consensus 157 ~~l~~~v~~~~nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 157 SAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp HHHHHHHHHTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 9999999837888999403566257899986530
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.73 E-value=0.00041 Score=40.07 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8199996469997478997361897
Q 000529 882 GVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 882 G~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
|.++.|+||||||||||.+.|..+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7499998999999999999998458
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.73 E-value=0.00046 Score=39.75 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=26.1
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9597699998699996799999994697999
Q 000529 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPS 205 (1441)
Q Consensus 175 i~pGelt~llGpsGSGKSTLL~~LaG~l~~~ 205 (1441)
++.+.-.++.||.||||||||++|.+..+++
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 9837888999403566257899986530145
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.73 E-value=0.00049 Score=39.59 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999967999999946979
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
+++|.||+|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.72 E-value=0.001 Score=37.52 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=23.8
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7899597699998699996799999994697
Q 000529 172 SGIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 172 sg~i~pGelt~llGpsGSGKSTLL~~LaG~l 202 (1441)
.|-+++|++++|.|+||+|||||..-++-..
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7986288599999179999899999999999
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.72 E-value=0.00029 Score=41.02 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999679999999469799
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l~~ 204 (1441)
+..|.|++|||||||+..|..++..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9999809999899999999999986
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.70 E-value=0.00037 Score=40.34 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999986999967999999946979
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
+..++.||||||||||.+.|+.++.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.68 E-value=0.00046 Score=39.76 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999646999747899736189
Q 000529 885 TALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 885 ~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
+||+|++|+|||||++.|.|+
T Consensus 26 I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHCCC
T ss_conf 999899998799999985298
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.67 E-value=0.00012 Score=43.45 Aligned_cols=27 Identities=44% Similarity=0.649 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 699998699996799999994697999
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGKLDPS 205 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~l~~~ 205 (1441)
+.++|.||||+|||||++.++..+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 699998899971999999999999977
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.66 E-value=0.00047 Score=39.71 Aligned_cols=27 Identities=37% Similarity=0.608 Sum_probs=21.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 976999986999967999999946979
Q 000529 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 177 pGelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
++--.+|.|||||||||+.+.|+-++.
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 988899982899988999999999858
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.63 E-value=0.00071 Score=38.53 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=19.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999869999679999999469
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~ 201 (1441)
++..+.||||||||||.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999999999999995
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.63 E-value=0.00069 Score=38.63 Aligned_cols=30 Identities=37% Similarity=0.461 Sum_probs=23.6
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 789959769999869999679999999469
Q 000529 172 SGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 172 sg~i~pGelt~llGpsGSGKSTLL~~LaG~ 201 (1441)
.|=+++|++++|.||||||||||..-++-.
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 799869969999838999889999999998
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.0085 Score=31.59 Aligned_cols=27 Identities=41% Similarity=0.652 Sum_probs=19.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 976999986999967999999946979
Q 000529 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 177 pGelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
+.+-+++.||||+|||++.++||..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 888678668998882289999999829
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.58 E-value=0.00061 Score=38.99 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=14.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999986999967999999946979
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
++.+|.|||||||||+.+.|+.++.
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 5999989999998999999999728
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.56 E-value=0.0007 Score=38.56 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88199996469997478997361897
Q 000529 881 PGVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 881 pG~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.|+++.|.|++||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.52 E-value=0.0011 Score=37.30 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=21.1
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 7899597699998699996799999994
Q 000529 172 SGIVKPGRLTLLLGPPSSGKTTLLLALA 199 (1441)
Q Consensus 172 sg~i~pGelt~llGpsGSGKSTLL~~La 199 (1441)
.|=+++|++++|.||||||||||..-++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.49 E-value=0.0008 Score=38.20 Aligned_cols=23 Identities=52% Similarity=0.582 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999967999999946979
Q 000529 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.+|.|||||||||+.+.|+-++.
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98989999998999999999979
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.48 E-value=0.0032 Score=34.30 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=10.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|++|+|||||+++|.|.
T Consensus 11 V~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999778
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.48 E-value=0.0008 Score=38.22 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699998699996799999994697
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~l 202 (1441)
.+.+|+|||||||||+.+.|+.++
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999999899999999985
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.47 E-value=0.001 Score=37.57 Aligned_cols=26 Identities=42% Similarity=0.632 Sum_probs=18.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 97699998699996799999994697
Q 000529 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 177 pGelt~llGpsGSGKSTLL~~LaG~l 202 (1441)
+|--.+++|||||||||.-+.||-++
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 96389998999998899999999986
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.46 E-value=0.00059 Score=39.08 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=21.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 97699998699996799999994697
Q 000529 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 177 pGelt~llGpsGSGKSTLL~~LaG~l 202 (1441)
.+.+..|+|||||||||+-+.|+-++
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 78289998999998799999999986
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.44 E-value=0.0009 Score=37.87 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699998699996799999994697
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~l 202 (1441)
.+.+|+|||||||||+.+.|+-++
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 489998999998899999999997
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.00087 Score=37.98 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
+++|.|++|||||||++.|+.+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.35 E-value=0.0011 Score=37.42 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=23.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88199996469997478997361897
Q 000529 881 PGVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 881 pG~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.|.++.|+||||+|||||.+.|..+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 98099999999999999999998639
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.33 E-value=0.00036 Score=40.41 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=25.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 881999964699974789973618978862799999
Q 000529 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIR 916 (1441)
Q Consensus 881 pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~ 916 (1441)
+|..++++|+||+|||||+|.|.+... .-+|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH--HHHCCCC
T ss_conf 356499987787348789875151767--6403555
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.32 E-value=0.021 Score=29.04 Aligned_cols=154 Identities=17% Similarity=0.128 Sum_probs=77.7
Q ss_pred EEEEEECCEEEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 06788488199996469997478997361897-88627999999592077112230789961589889888988999998
Q 000529 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYS 953 (1441)
Q Consensus 875 is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~-~~g~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~ 953 (1441)
+.|-+.+|.++.|.|++|+|||+|..-++-.. +.+. .+.|+.-+ .+..+.....
T Consensus 19 l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~-------------------~~~~is~e------~~~~~~~~~~ 73 (242)
T d1tf7a2 19 CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKE-------------------RAILFAYE------ESRAQLLRNA 73 (242)
T ss_dssp TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC-------------------CEEEEESS------SCHHHHHHHH
T ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCCEEECC------CCHHHHHHHH
T ss_conf 5689869849999918999999999999999987232-------------------44112126------7999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHCCCEEEEECCCC---CCCHH
Q ss_conf 771199999988999999999998399642223346988776798898899999999-61997669829999---99999
Q 000529 954 AWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVEL-VANPSIIFMDEPTS---GLDAR 1029 (1441)
Q Consensus 954 a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~L-~~~p~il~lDEPTs---GLD~~ 1029 (1441)
..+. .+.. +.. ..+.....+.. .......+. .-.|...+ -.+|++++.|--+. +.+..
T Consensus 74 ~~~~----~~~~-------~~~-~~~~~~~~~~~-----~~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~ 135 (242)
T d1tf7a2 74 YSWG----MDFE-------EME-RQNLLKIVCAY-----PESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNN 135 (242)
T ss_dssp HTTS----CCHH-------HHH-HTTSEEECCCC-----GGGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHH
T ss_pred HHCC----CCHH-------HHH-HCCCEEEEEEE-----CCHHHHHHH-HHHHHHHHHHCCCCEEEEECCHHHHCCCCHH
T ss_conf 9829----9869-------985-45861799730-----001017999-9999999984088533220431430489999
Q ss_pred HHHHHHHHHHHHH-HCCCEEEEEECCC---------CHHHHHHHCEEEEEEC
Q ss_conf 9999999999998-6699899996478---------6899986275879925
Q 000529 1030 AAAIVMRTVRNTV-DTGRTVVCTIHQP---------SIDIFEAFDELFLMKR 1071 (1441)
Q Consensus 1030 ~a~~i~~~l~~~~-~~g~tvi~t~Hqp---------s~~i~~~fD~illl~~ 1071 (1441)
.....+..+.+++ +.+.+++++.|.. +..+....|.++.|..
T Consensus 136 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 136 AFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 9999999999999986983999985675125544577640464216999998
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.31 E-value=0.0014 Score=36.72 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=21.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 69999869999679999999469799
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~l~~ 204 (1441)
++.+|.|+|||||||+.+.|+-++..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 88999899998989999999999987
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.29 E-value=0.0011 Score=37.23 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999679999999469
Q 000529 180 LTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~ 201 (1441)
..+|+|+||+|||||++.|.|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.24 E-value=0.0066 Score=32.28 Aligned_cols=24 Identities=50% Similarity=0.724 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999967999999946979
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
-.++.||||+|||+|.++|+..+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.0015 Score=36.38 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699996799999994697
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l 202 (1441)
..+|+|||||||||..+.|+-++
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.22 E-value=0.0011 Score=37.22 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999986999967999999946979
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.-.+++||||+|||.|.++||..+.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 6699989999888899999862132
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.21 E-value=0.0013 Score=36.77 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699996799999994697
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l 202 (1441)
..+|+|+||+|||||+++|.|+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.21 E-value=0.0016 Score=36.33 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=14.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999986999967999999946
Q 000529 179 RLTLLLGPPSSGKTTLLLALAG 200 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG 200 (1441)
++.+++|+|||||||+.+.|+.
T Consensus 15 ~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 15 EVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CEEEEECCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999989999989999999997
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.20 E-value=0.0013 Score=36.75 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.+++|+||+|||||+|+|.|+.
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999988999999996898
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.17 E-value=0.00097 Score=37.66 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=12.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7699998699996799999994697
Q 000529 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 178 Gelt~llGpsGSGKSTLL~~LaG~l 202 (1441)
|....+.|+|||||||+-+.|+-++
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9699988999999999999999999
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.16 E-value=0.0014 Score=36.64 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
..|+|||||||||+.+.|+-++
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.16 E-value=0.0016 Score=36.33 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999967999999946979
Q 000529 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.+|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.14 E-value=0.0015 Score=36.35 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 488199996469997478997361897
Q 000529 880 RPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 880 ~pG~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
+.|.++.|.|++||||||+-+.|+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.12 E-value=0.002 Score=35.57 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=20.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8995976999986999967999999946
Q 000529 173 GIVKPGRLTLLLGPPSSGKTTLLLALAG 200 (1441)
Q Consensus 173 g~i~pGelt~llGpsGSGKSTLL~~LaG 200 (1441)
|=+++|++++|.||||||||+|..-++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9976897999988998878899999999
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.11 E-value=0.002 Score=35.60 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=11.2
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999646999747899736189
Q 000529 885 TALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 885 ~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
++|+|++|+|||||++.|+|.
T Consensus 3 V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999899999999677
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.11 E-value=0.0016 Score=36.24 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 488199996469997478997361897
Q 000529 880 RPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 880 ~pG~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=7.6e-05 Score=44.80 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=23.6
Q ss_pred EECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 31517899597699998699996799999994697
Q 000529 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 168 L~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l 202 (1441)
.++.+..+.|| +|+|.||+||||||+|.||.--+
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 70279974998-08998899998799999999996
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.0016 Score=36.24 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=18.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999986999967999999946979
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
++.+|+||||+||+||++.|..+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.06 E-value=0.0018 Score=35.88 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699996799999994697
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l 202 (1441)
-.+|+|.+|+|||||+|+|.|+-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.05 E-value=0.0015 Score=36.53 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.+|+|||||||||+-+.|+-++
T Consensus 9 IiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 9 AAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899998799999999997
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.05 E-value=0.0023 Score=35.25 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=31.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCCCEEEEECCC
Q ss_conf 9999869999679999999469799998310999978407997755208997479
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQH 234 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~~~~~aYv~Q~ 234 (1441)
=.+++||+|+|||-|.+.||+.++- --+..++.... .+|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC----------CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCEEE------ECCEEECC
T ss_conf 4799899998899999999987389-----88986255114------11111044
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.0017 Score=36.12 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=17.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7699998699996799999994697
Q 000529 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 178 Gelt~llGpsGSGKSTLL~~LaG~l 202 (1441)
.....|.||||||||||++.|...+
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3289743899998999999999999
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.04 E-value=0.0019 Score=35.73 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 488199996469997478997361897
Q 000529 880 RPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 880 ~pG~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
++|-.++|+|++||||||+.+.|+.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.03 E-value=0.0012 Score=37.09 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=13.3
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999646999747899736189
Q 000529 885 TALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 885 ~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
+||+|++++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.02 E-value=0.0015 Score=36.38 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999869999679999999469799
Q 000529 181 TLLLGPPSSGKTTLLLALAGKLDP 204 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l~~ 204 (1441)
.+|.||||||||||++.|+.+.+.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 999899999989999999974886
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.00 E-value=0.0017 Score=36.04 Aligned_cols=24 Identities=42% Similarity=0.617 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999967999999946979
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
..++-||||+||||+.++||..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.99 E-value=0.0016 Score=36.24 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999967999999946979
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
...|.|||||||||+-+.||-++.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.99 E-value=0.0014 Score=36.67 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=25.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC-CCEEEEEEEECC
Q ss_conf 1999964699974789973618978-862799999959
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGRKT-GGYITGDIRISG 919 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~~~-~g~~~G~i~i~g 919 (1441)
.+++|+|.+|||||||+..|..+.. .|..-|.|.-++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 09999809999899999999999986798379998316
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.96 E-value=0.0022 Score=35.37 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999967999999946979
Q 000529 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.+|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999987999999999879
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.93 E-value=0.0024 Score=35.15 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.+|+|.||+|||||+|+|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999997899999995888
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.89 E-value=0.0017 Score=36.15 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=13.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
-+.|-||+|+|||+|.+.+++.
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHH
T ss_conf 5788789987630477887877
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.89 E-value=0.0025 Score=34.96 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.+++|||||||||+.+.|+-++
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999899999999996
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.87 E-value=0.0001 Score=43.91 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=27.4
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 5205067884881999964699974789973618
Q 000529 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 871 iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g 904 (1441)
-.++.++.+.+| ++.|+|+|||||||++++|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 870279974998-089988999987999999999
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.87 E-value=0.0029 Score=34.58 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999986999967999999946979
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.+.+++|.|||||||+.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.0031 Score=34.37 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=20.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8819999646999747899736189
Q 000529 881 PGVLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 881 pG~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
+..-+.+.||+|+|||+|.+.|+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 8886786689988822899999998
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.85 E-value=0.0027 Score=34.81 Aligned_cols=22 Identities=59% Similarity=0.877 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.+|+|||||||||+-+.|+-++
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999799999999998
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.84 E-value=0.0027 Score=34.80 Aligned_cols=25 Identities=44% Similarity=0.597 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999986999967999999946979
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
+=+++.||||+|||++.++||..+.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 0799889699988999999862010
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.0019 Score=35.80 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999967999999946979
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
+.+|.|||||||+|+-+.|+.++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.0024 Score=35.07 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999967999999946979
Q 000529 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.+++|||||||||..+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99987999998999999999869
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.83 E-value=0.0028 Score=34.70 Aligned_cols=24 Identities=38% Similarity=0.333 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999967999999946979
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
+.+|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.83 E-value=0.0023 Score=35.23 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999967999999946979
Q 000529 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.+|+||||||||||++.|+.+.+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.82 E-value=0.0033 Score=34.22 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=12.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++|+|.+|+|||||++.|.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.81 E-value=0.0028 Score=34.68 Aligned_cols=24 Identities=50% Similarity=0.744 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999869999679999999469799
Q 000529 181 TLLLGPPSSGKTTLLLALAGKLDP 204 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l~~ 204 (1441)
.++-||||+||||+.++|+..+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 898799997388999999850388
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.80 E-value=0.0021 Score=35.44 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996469997478997361897
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
..++|.|++|+|||||.+.|+.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.004 Score=33.71 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=22.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 7884881999964699974789973618
Q 000529 877 GAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 877 ~~i~pG~~~ai~G~sGaGKTTLl~~L~g 904 (1441)
|-+++|.++.+.|++|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9966735899805777478999999999
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.78 E-value=0.0022 Score=35.43 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
-+.+.||+|+|||+|.+.|++.
T Consensus 44 giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 4887668988835999999987
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.0036 Score=34.00 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999646999747899736189
Q 000529 885 TALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 885 ~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
++|+|.+++|||||++.|.|.
T Consensus 8 I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999979999899999999589
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.72 E-value=0.0022 Score=35.43 Aligned_cols=20 Identities=30% Similarity=0.611 Sum_probs=10.0
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99964699974789973618
Q 000529 885 TALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 885 ~ai~G~sGaGKTTLl~~L~g 904 (1441)
+||+|.+++|||||++.|+|
T Consensus 4 VaivG~~nvGKSTLin~L~~ 23 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTR 23 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999989999999968
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.71 E-value=0.0033 Score=34.24 Aligned_cols=22 Identities=59% Similarity=0.819 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.++.||||+||||+.++++..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997899974879999999998
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.71 E-value=0.0036 Score=34.00 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999967999999946979
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
..+|.|||||||||.-+.||-++.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.71 E-value=0.0029 Score=34.58 Aligned_cols=23 Identities=52% Similarity=0.778 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999967999999946979
Q 000529 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.++-||||+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.71 E-value=0.0021 Score=35.47 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 69999869999679999999469799
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~l~~ 204 (1441)
++.++.|+|||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.70 E-value=0.0033 Score=34.20 Aligned_cols=23 Identities=48% Similarity=0.585 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999967999999946979
Q 000529 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.+|.|+|||||||+.+.||.++.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999988999999999839
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.70 E-value=0.0046 Score=33.33 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=15.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999869999679999999469
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~ 201 (1441)
....|.||||+|||||+..|...
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 59861179988899999999998
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.69 E-value=0.0034 Score=34.15 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999967999999946979
Q 000529 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
..++|+|||||||+-+.||-++.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999949
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.0042 Score=33.55 Aligned_cols=25 Identities=40% Similarity=0.759 Sum_probs=17.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8199996469997478997361897
Q 000529 882 GVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 882 G~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
|-.++++|++++|||||++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.69 E-value=0.0023 Score=35.26 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=26.5
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 678848819999646999747899736189
Q 000529 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 876 s~~i~pG~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.|.++||+++.|.|++|+|||||..-++..
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 589859979999958999999999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.0039 Score=33.75 Aligned_cols=44 Identities=18% Similarity=0.150 Sum_probs=32.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCCCEEEEECCCCCCCCC
Q ss_conf 9999869999679999999469799998310999978407997755208997479988999
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGE 240 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~~~~~aYv~Q~D~~~~~ 240 (1441)
+.+|-|++||||||+-+.|...+... .....+..++++|-|.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHH-----------------CCCCCEEEEEEEEEECCC
T ss_conf 99996899998768999999997304-----------------689965999521568984
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.68 E-value=0.0032 Score=34.32 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999679999999469
Q 000529 180 LTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~ 201 (1441)
-.+++|+||+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.67 E-value=0.0027 Score=34.83 Aligned_cols=23 Identities=43% Similarity=0.703 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999967999999946979
Q 000529 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.++.||||+|||++.++++....
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCHHHHHHHHHHHC
T ss_conf 68766998883089999998748
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.66 E-value=0.0023 Score=35.27 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.+|+|+|++|||||+|.|+|.-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999987999999996899
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.64 E-value=0.0032 Score=34.34 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
-++|+|++|+|||||++.|.|++
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.63 E-value=0.0027 Score=34.78 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.+|+|++|+|||||++.|.+..
T Consensus 16 I~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 16 LVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999996788
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.62 E-value=0.0022 Score=35.32 Aligned_cols=22 Identities=45% Similarity=0.614 Sum_probs=17.8
Q ss_pred EEECCCCCCHHHHHHHHHCCCC
Q ss_conf 9986999967999999946979
Q 000529 182 LLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 182 ~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.++|+|||||||+-+.||.++.
T Consensus 5 vliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 5 VLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEECSTTSSHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHC
T ss_conf 9988999988999999999849
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.60 E-value=0.0039 Score=33.80 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|+|.+|||||+++|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.58 E-value=0.0034 Score=34.12 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|+||+|||||++.|.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999659
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.57 E-value=0.0031 Score=34.44 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964699974789973618
Q 000529 884 LTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g 904 (1441)
++++.|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.55 E-value=0.0034 Score=34.18 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999646999747899736189
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
-++||-|++|||||||.+.|+..
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89997898878999999999998
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.52 E-value=0.0045 Score=33.35 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.+++|++|+|||||++.|.+..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHCCCC
T ss_conf 9999999989999999980899
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.50 E-value=0.0047 Score=33.26 Aligned_cols=23 Identities=43% Similarity=0.720 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699996799999994697
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l 202 (1441)
-.+++|+|++|||||++.|.|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998999998999999996888
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.47 E-value=0.0046 Score=33.29 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=13.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 769999869999679999999469
Q 000529 178 GRLTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 178 Gelt~llGpsGSGKSTLL~~LaG~ 201 (1441)
++.++|.||+|+|||||++.++..
T Consensus 29 ~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 29 APITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 987999869998299999999997
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.45 E-value=0.004 Score=33.72 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.++|+|.+|+|||||+|.|.|+.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.45 E-value=0.0042 Score=33.55 Aligned_cols=22 Identities=45% Similarity=0.558 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.+++|+||+|||||++.|.+.-
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.45 E-value=0.0037 Score=33.95 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996469997478997361897
Q 000529 885 TALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 885 ~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
+.|+||||||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999748
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.42 E-value=0.0044 Score=33.40 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996469997478997361897
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.++.|+||||+||+||++-|..+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.42 E-value=0.0042 Score=33.55 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996469997478997361897
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
-.+||+|.+|+|||||+|.|.|..
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 179998999997899999995888
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.41 E-value=0.0053 Score=32.90 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8199996469997478997361897
Q 000529 882 GVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 882 G~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
+-.+|++|.+|+|||||++.|.|..
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.41 E-value=0.0047 Score=33.23 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999679999999469
Q 000529 180 LTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~ 201 (1441)
..+|+|++.+|||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.40 E-value=0.0046 Score=33.31 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 1999964699974789973618
Q 000529 883 VLTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g 904 (1441)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.37 E-value=0.0048 Score=33.21 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996469997478997361897
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.++.|.|++||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 089998999999899999999980
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.0058 Score=32.68 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=27.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCCCEEEEECCCCCCCC
Q ss_conf 999986999967999999946979999831099997840799775520899747998899
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIG 239 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~~~~~aYv~Q~D~~~~ 239 (1441)
+.+|-||+||||||+-+.|+-.+.... +. .....+..++++|.|.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~-----~~---------~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE-----VD---------YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG-----SC---------GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC-----CC---------CCCCCEEEEECCCCCCC
T ss_conf 999989997879999999999964101-----34---------57884399934653224
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.32 E-value=0.0053 Score=32.92 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8199996469997478997361897
Q 000529 882 GVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 882 G~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
..++.|.|++||||||+.+.|+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 8599998999999899999999972
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.29 E-value=0.0064 Score=32.40 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 69999869999679999999469799
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~l~~ 204 (1441)
...+|.||||+||||+++.++..+..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 81688898999899999999999754
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.29 E-value=0.0026 Score=34.91 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=16.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.++|+|.+++|||||++.|.+.+
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899998999999985898
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.28 E-value=0.0045 Score=33.37 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.+.|+|++||||||+.+.|+.+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.25 E-value=0.0042 Score=33.58 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999964699974789973618978
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRKT 907 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~~ 907 (1441)
.++|+|++++|||||++.|.+...
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~ 28 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSV 28 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999889999999967999
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.25 E-value=0.0054 Score=32.84 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999679999999469
Q 000529 180 LTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~ 201 (1441)
..+++|.|++|||||+|+|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.24 E-value=0.0055 Score=32.83 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699996799999994697
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l 202 (1441)
..+++|++|+|||||++.|.|.-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.24 E-value=0.0053 Score=32.90 Aligned_cols=29 Identities=38% Similarity=0.594 Sum_probs=21.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 59769999869999679999999469799
Q 000529 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1441)
Q Consensus 176 ~pGelt~llGpsGSGKSTLL~~LaG~l~~ 204 (1441)
.|+=+.++.||.||||||+|.++...++.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf 41054898767877744779998666257
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.23 E-value=0.0047 Score=33.23 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999646999747899736189
Q 000529 885 TALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 885 ~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
+.|+||||||||||++.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.23 E-value=0.0076 Score=31.90 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=15.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 97699998699996799999994697
Q 000529 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 177 pGelt~llGpsGSGKSTLL~~LaG~l 202 (1441)
.|.+..+.|.|||||||+.+.|+-++
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98699998999999899999999887
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.22 E-value=0.006 Score=32.58 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|.||+|||||++.|.+.
T Consensus 18 I~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 18 VIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999668
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.22 E-value=0.0028 Score=34.73 Aligned_cols=26 Identities=42% Similarity=0.455 Sum_probs=23.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88199996469997478997361897
Q 000529 881 PGVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 881 pG~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.|.++.|+|++||||||+.+.|+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.0054 Score=32.86 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
++||-|++||||||+.+.|+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978799999999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.20 E-value=0.0057 Score=32.73 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.+++|+||+|||||++.+.+.-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989999999996798
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.15 E-value=0.0063 Score=32.40 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999646999747899736189
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++.|+||+||||||+.+.|+..
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 48999899999889999999999
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.12 E-value=0.0069 Score=32.18 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699996799999994697
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l 202 (1441)
..+|+|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.11 E-value=0.0027 Score=34.77 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999679999999469799
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l~~ 204 (1441)
=+++.||||+|||||++.+++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 0899889985299999999873798
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.08 E-value=0.0042 Score=33.56 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.+++|+|++|||||++.|.|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.03 E-value=0.0062 Score=32.47 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699996799999994697
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l 202 (1441)
-.+++|+|++|||||+|+|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899998999999985898
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.98 E-value=0.0076 Score=31.92 Aligned_cols=26 Identities=42% Similarity=0.515 Sum_probs=23.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 48819999646999747899736189
Q 000529 880 RPGVLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 880 ~pG~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
++|-.+.|+||+||||||+-+.|+.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.98 E-value=0.023 Score=28.82 Aligned_cols=28 Identities=32% Similarity=0.311 Sum_probs=17.2
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9959769999869999679999999469
Q 000529 174 IVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 174 ~i~pGelt~llGpsGSGKSTLL~~LaG~ 201 (1441)
+.-.|.=+++.||||+|||||...|..+
T Consensus 11 v~~~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 11 LEVFGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999999818999989999999985
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.97 E-value=0.0044 Score=33.41 Aligned_cols=28 Identities=43% Similarity=0.411 Sum_probs=23.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5976999986999967999999946979
Q 000529 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 176 ~pGelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
+.++..++.||||+|||++.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.97 E-value=0.0079 Score=31.80 Aligned_cols=22 Identities=50% Similarity=0.901 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.++-||||+||||+.++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.90 E-value=0.0092 Score=31.35 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=13.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 81999964699974789973618
Q 000529 882 GVLTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 882 G~~~ai~G~sGaGKTTLl~~L~g 904 (1441)
+..++++||+|+||||.+-=||.
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 77999989999988999999999
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.87 E-value=0.0073 Score=32.00 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.++|+|++|+|||||++.|.+..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996788
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.83 E-value=0.009 Score=31.43 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999967999999946979
Q 000529 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.++-||||+||||+.++++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.78 E-value=0.02 Score=29.16 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=17.6
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 789959769999869999679999999469
Q 000529 172 SGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 172 sg~i~pGelt~llGpsGSGKSTLL~~LaG~ 201 (1441)
+.+.-.|.=.++.|+||+|||||...|..+
T Consensus 8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 8 VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999999808999989999999985
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.76 E-value=0.01 Score=31.09 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8199996469997478997361897
Q 000529 882 GVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 882 G~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
-.++.|+||+||||||+.+.|+...
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.75 E-value=0.01 Score=31.05 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=13.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 97699998699996799999994697
Q 000529 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 177 pGelt~llGpsGSGKSTLL~~LaG~l 202 (1441)
.|.+.++-|+.||||||+.+.|+..+
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 80599998998889999999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.74 E-value=0.0086 Score=31.54 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996469997478997361897
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.+++|.|++||||||+.+.|+.+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 889998999989899999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.73 E-value=0.0087 Score=31.51 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999986999967999999946979
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
-+.+|-|+.||||||+++.|+..+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.72 E-value=0.0067 Score=32.23 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996469997478997361897
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
..+.|.|++|+|||||+..++...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998899971999999999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.71 E-value=0.0072 Score=32.03 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=18.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 76999986999967999999946979
Q 000529 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 178 Gelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
+++.+|-|+.||||||+++.|+.++.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.68 E-value=0.01 Score=31.12 Aligned_cols=22 Identities=45% Similarity=0.868 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.++-||||+||||+.++++..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899877558999999985
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.67 E-value=0.0093 Score=31.34 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996469997478997361897
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
-.+||.||+||||||+-+.|+...
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 599978999879899999999996
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.64 E-value=0.0056 Score=32.74 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699996799999994697
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l 202 (1441)
+.++.||||+||||++++++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89967899989999999999998
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.64 E-value=0.037 Score=27.44 Aligned_cols=21 Identities=48% Similarity=0.523 Sum_probs=10.4
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964699974789973618
Q 000529 884 LTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g 904 (1441)
+++++||+|+||||.+-=||.
T Consensus 12 vi~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 12 LWFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899989999988999999999
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.62 E-value=0.0078 Score=31.83 Aligned_cols=29 Identities=34% Similarity=0.507 Sum_probs=25.6
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 67884881999964699974789973618
Q 000529 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 876 s~~i~pG~~~ai~G~sGaGKTTLl~~L~g 904 (1441)
.|-+++|+++.|.|++|+|||||..-++-
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79986996999983899988999999999
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=94.61 E-value=0.015 Score=29.97 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=21.7
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8488199996469997478997361897
Q 000529 879 FRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 879 i~pG~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
-.|.-.+.+.||+|+|||.|.+.|++..
T Consensus 120 ~~~~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 120 RYASGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3688638887799850889999999986
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.59 E-value=0.01 Score=31.03 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.58 E-value=0.012 Score=30.54 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=11.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+|+|..+||||||+|+|.|.
T Consensus 27 ivVvG~~ssGKSSliNaLlG~ 47 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGR 47 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTS
T ss_pred EEEEECCCCCHHHHHHHHHCC
T ss_conf 999818989799999999689
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.57 E-value=0.0094 Score=31.32 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=21.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8819999646999747899736189
Q 000529 881 PGVLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 881 pG~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
..-.++|.|+.|||||||++.|...
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~ 77 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGML 77 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8328974389999899999999999
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.56 E-value=0.014 Score=30.11 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.+++|++.+|||||+++|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.52 E-value=0.011 Score=30.95 Aligned_cols=21 Identities=57% Similarity=0.722 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|++|+|||||++.+.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998999999999648
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.0095 Score=31.26 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.+.|.|++||||||+-+.|+-+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.47 E-value=0.0093 Score=31.32 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=25.9
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 67884881999964699974789973618
Q 000529 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 876 s~~i~pG~~~ai~G~sGaGKTTLl~~L~g 904 (1441)
.|.+++|+++.|.|++|+||||+..-++-
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 79862885999991799998999999999
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.45 E-value=0.0094 Score=31.30 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.+.|+||+||||||+.+.|+.+.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.42 E-value=0.017 Score=29.64 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=22.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 976999986999967999999946979
Q 000529 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 177 pGelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
|....+++||+|+|||.|.+.||..+.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 765899977875006999999986336
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.39 E-value=0.018 Score=29.48 Aligned_cols=26 Identities=38% Similarity=0.327 Sum_probs=22.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 76999986999967999999946979
Q 000529 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 178 Gelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
..+.+++||+|+||||.+--||.++.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 86899989999988999999999999
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.37 E-value=0.011 Score=30.98 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996469997478997361897
Q 000529 885 TALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 885 ~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
+.|+|++||||||+.+.||.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.34 E-value=0.011 Score=30.90 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 1999964699974789973618978
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGRKT 907 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~~~ 907 (1441)
..+.|.||+|+|||||.+.|++...
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999889799889999999999865
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.30 E-value=0.014 Score=30.10 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 48819999646999747899736189
Q 000529 880 RPGVLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 880 ~pG~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
+.|.++-+.|.|||||||+.+.|+.+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99869999899999989999999988
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.28 E-value=0.0028 Score=34.74 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=12.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|+|++|||||+++|.|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999589
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.26 E-value=0.016 Score=29.76 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=17.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 76999986999967999999946979
Q 000529 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 178 Gelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
|.+.++-|+.||||||+.+.|+.++.
T Consensus 2 gkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 2 SKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 87899989988879999999999999
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.25 E-value=0.012 Score=30.69 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=10.2
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99964699974789973618
Q 000529 885 TALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 885 ~ai~G~sGaGKTTLl~~L~g 904 (1441)
+.|.||+|+||||+...++.
T Consensus 36 lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99889999988999999997
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.23 E-value=0.015 Score=29.94 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=21.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 4881999964699974789973618
Q 000529 880 RPGVLTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 880 ~pG~~~ai~G~sGaGKTTLl~~L~g 904 (1441)
+.-+++-++|++||||||+.+-|+.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.22 E-value=0.013 Score=30.32 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999646999747899736189
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.+++++|.+|+|||||.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999999999999999
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.20 E-value=0.012 Score=30.60 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
-+||+|...||||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.20 E-value=0.014 Score=30.28 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.18 E-value=0.03 Score=28.10 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=20.7
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 33151789959769999869999679999999469
Q 000529 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 167 iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~ 201 (1441)
.||. +.+...|.=+++.|+||+|||||...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.18 E-value=0.015 Score=30.00 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=19.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 7884881999964699974789973618
Q 000529 877 GAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 877 ~~i~pG~~~ai~G~sGaGKTTLl~~L~g 904 (1441)
|-++.|.++.+.|++|+|||||.-.++.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9866633699964887488999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.17 E-value=0.016 Score=29.79 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999967999999946
Q 000529 180 LTLLLGPPSSGKTTLLLALAG 200 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG 200 (1441)
+.+|.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.16 E-value=0.015 Score=30.01 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999996989999999709
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.14 E-value=0.013 Score=30.39 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 48819999646999747899736189
Q 000529 880 RPGVLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 880 ~pG~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
+.+.++.|+||+||||||+.+.|+.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 67828999899999879999999998
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.13 E-value=0.014 Score=30.16 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=21.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8819999646999747899736189
Q 000529 881 PGVLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 881 pG~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
..-.++|.|+.|||||||++.|...
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8159861179988899999999998
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.13 E-value=0.013 Score=30.30 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999646999747899736189
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
-++||.|++||||||+-+.|...
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHHHHH
T ss_conf 89999689999876899999999
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.13 E-value=0.014 Score=30.13 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.+.|+||+||||||..+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.12 E-value=0.0081 Score=31.71 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=28.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCCCEEEEECCCCCCC
Q ss_conf 99998699996799999994697999983109999784079977552089974799889
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHI 238 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~~~~~aYv~Q~D~~~ 238 (1441)
+.+|-|+|||||||+.++|...+... .-.++.++|+|-|-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-------------------~v~~~iI~~Dsfyr 45 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-------------------GVKAVSIEGDAFHR 45 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-------------------TCCEEEEEGGGGBS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------------------CCCEEEEECCCCCC
T ss_conf 99998999780999999999997156-------------------99769994777875
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.10 E-value=0.013 Score=30.38 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.+.|+|++||||||+-+.||.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.09 E-value=0.018 Score=29.49 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=13.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999619
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.08 E-value=0.017 Score=29.57 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996469997478997361897
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
-+++|-|+.||||||+++.|+...
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.07 E-value=0.017 Score=29.62 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=23.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 81999964699974789973618978
Q 000529 882 GVLTALMGVSGAGKTTLMDVLAGRKT 907 (1441)
Q Consensus 882 G~~~ai~G~sGaGKTTLl~~L~g~~~ 907 (1441)
+.+++|-|+.||||||+++.|+....
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.07 E-value=0.013 Score=30.31 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.05 E-value=0.022 Score=28.89 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=9.7
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964699974789973618
Q 000529 884 LTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g 904 (1441)
+++++||+|+||||.+-=||.
T Consensus 13 vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999988999999999
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.99 E-value=0.018 Score=29.43 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=12.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 1999964699974789973618
Q 000529 883 VLTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g 904 (1441)
.+++++||+|+||||.+-=||.
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp EEEEEECSCCC----HHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999989999998999999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.98 E-value=0.013 Score=30.38 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=24.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 6788488199996469997478997361
Q 000529 876 SGAFRPGVLTALMGVSGAGKTTLMDVLA 903 (1441)
Q Consensus 876 s~~i~pG~~~ai~G~sGaGKTTLl~~L~ 903 (1441)
.|-+++|+++.|.|++|+|||||.--++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.98 E-value=0.017 Score=29.58 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+|+|.|.+|||||+|+|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 768899999899999999788
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.97 E-value=0.014 Score=30.26 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8819999646999747899736189
Q 000529 881 PGVLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 881 pG~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
|+.-+.+.||+|+|||.|.++||..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9866999899998888999998621
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.97 E-value=0.013 Score=30.42 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
-++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.94 E-value=0.023 Score=28.80 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 7884881999964699974789973618
Q 000529 877 GAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 877 ~~i~pG~~~ai~G~sGaGKTTLl~~L~g 904 (1441)
|-++.|.++-+-|++|+|||||.-.++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9866754789805876522799999999
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.93 E-value=0.019 Score=29.40 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=13.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999679999999469
Q 000529 180 LTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~ 201 (1441)
..+|+|.-+||||||+|+|.|.
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~ 49 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999768989799999999689
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.93 E-value=0.017 Score=29.73 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=13.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999829
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.91 E-value=0.014 Score=30.27 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.+.|+|++|+|||||++.|.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.026 Score=28.49 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.+++|.+|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998989939999999981885
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.88 E-value=0.018 Score=29.52 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=23.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 48819999646999747899736189
Q 000529 880 RPGVLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 880 ~pG~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
+.|.+++|-|+.||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98059999899888999999999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.87 E-value=0.019 Score=29.27 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.84 E-value=0.016 Score=29.85 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996469997478997361897
Q 000529 885 TALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 885 ~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
+.|+|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.83 E-value=0.018 Score=29.55 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999967999999946
Q 000529 181 TLLLGPPSSGKTTLLLALAG 200 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG 200 (1441)
.+++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999982
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.83 E-value=0.016 Score=29.82 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.++++|.+|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.82 E-value=0.039 Score=27.34 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
+.|+|-|.+|||||+++|++-
T Consensus 13 iGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 13 TGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEECSSSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999789999899999999778
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.81 E-value=0.048 Score=26.74 Aligned_cols=36 Identities=31% Similarity=0.297 Sum_probs=28.1
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 6520506788488199996469997478997361897
Q 000529 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 870 ~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
..+|.....+ .|.-+.+.|+||+|||||...|..+-
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 3178999999-99999998189999899999999859
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.81 E-value=0.026 Score=28.43 Aligned_cols=27 Identities=41% Similarity=0.463 Sum_probs=14.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 976999986999967999999946979
Q 000529 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 177 pGelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.|.+.++=|+-||||||+.+.|+-++.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.77 E-value=0.018 Score=29.42 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.+.|+|++||||||+.+.|+...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.017 Score=29.61 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997998999999999809
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.019 Score=29.31 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.68 E-value=0.028 Score=28.30 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=13.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699996799999994697
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l 202 (1441)
+.+++||+|+||||.+-=||-++
T Consensus 11 vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 11 VILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999999
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.59 E-value=0.015 Score=29.99 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=25.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 67884881999964699974789973618
Q 000529 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 876 s~~i~pG~~~ai~G~sGaGKTTLl~~L~g 904 (1441)
.|-+++|.++.|.|++|+|||++..-++.
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69976897999988998878899999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.55 E-value=0.021 Score=29.08 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 1999964699974789973618
Q 000529 883 VLTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g 904 (1441)
-++||.|++||||||+.+.|..
T Consensus 4 ~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999989887789999999998
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.55 E-value=0.027 Score=28.32 Aligned_cols=53 Identities=25% Similarity=0.377 Sum_probs=30.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 999986999967999999946979999831099997840799775520899747998899999999999976
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAA 251 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~~~~~aYv~Q~D~~~~~lTVrEtL~Faa 251 (1441)
+..|-|++|||||||-..|.-.+... .| ....++.++.+|.+ +|-.|-...+.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~---~~-------------~~~~v~~iS~DdfY---~t~~~r~~L~~ 81 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK---YG-------------GEKSIGYASIDDFY---LTHEDQLKLNE 81 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH---HG-------------GGSCEEEEEGGGGB---CCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---HC-------------CCCCEEEECCCCCC---CCHHHHHHHHH
T ss_conf 99837998788999999999999987---27-------------78606763567777---88899999852
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.53 E-value=0.028 Score=28.27 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|++|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.51 E-value=0.02 Score=29.25 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.50 E-value=0.024 Score=28.64 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996469997478997361897
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
-.++++|.+|+|||||++.|.+..
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999989899999996688
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.48 E-value=0.021 Score=29.02 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.43 E-value=0.023 Score=28.83 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
++.|.|++||||||+.+.|+.+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998989989899999999999
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.40 E-value=0.023 Score=28.77 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.+.|+|++||||||+.+.|+.+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.38 E-value=0.022 Score=28.96 Aligned_cols=23 Identities=43% Similarity=0.514 Sum_probs=17.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999869999679999999469
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~ 201 (1441)
-+++|-|.-||||||||+-|...
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred CEEEEEECCCCCHHHHHHHHHHC
T ss_conf 88998648889999999999856
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.38 E-value=0.023 Score=28.75 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990889999999719
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.37 E-value=0.024 Score=28.67 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=13.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999967999999946
Q 000529 181 TLLLGPPSSGKTTLLLALAG 200 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG 200 (1441)
.+|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999971
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.30 E-value=0.024 Score=28.72 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.29 E-value=0.028 Score=28.28 Aligned_cols=33 Identities=39% Similarity=0.718 Sum_probs=19.5
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 520506788488199996469997478997361897
Q 000529 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 871 iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
+|+.++. |=.+++|+|+.++||||||+.|.|..
T Consensus 24 ~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 9970799---87999988999997999999980998
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=93.28 E-value=0.15 Score=23.54 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=22.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 76999986999967999999946979
Q 000529 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 178 Gelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
+--.+++|-|.+|||||+|+|.|+-.
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 52789986675443555425426615
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.27 E-value=0.025 Score=28.57 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.26 E-value=0.027 Score=28.37 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|.+|+|||||++.+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998993999999999719
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.25 E-value=0.023 Score=28.76 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+|+|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999739
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.25 E-value=0.026 Score=28.42 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.24 E-value=0.031 Score=28.00 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.039 Score=27.29 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.+++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989929999999997286
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.15 E-value=0.017 Score=29.57 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|++|+|||||++.+.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999887338
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.14 E-value=0.014 Score=30.16 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=93.10 E-value=0.02 Score=29.21 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHH
Q ss_conf 99986999967999999
Q 000529 181 TLLLGPPSSGKTTLLLA 197 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~ 197 (1441)
++|.|+|||||||.|-.
T Consensus 17 ~lI~g~aGTGKTt~l~~ 33 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITN 33 (306)
T ss_dssp EEECCCTTSCHHHHHHH
T ss_pred EEEEEECCCCHHHHHHH
T ss_conf 89996288438999999
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.07 E-value=0.025 Score=28.55 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|.+|+|||||++.+.+.
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990999999999709
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.04 E-value=0.027 Score=28.36 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.+.|+||+||||||..+.|+.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.03 E-value=0.026 Score=28.49 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999967999999946
Q 000529 181 TLLLGPPSSGKTTLLLALAG 200 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG 200 (1441)
.+|+|++|+|||||++.+.+
T Consensus 7 v~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 7 IAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899298999999971
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.02 E-value=0.029 Score=28.19 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.+.|+||+||||||+-+.|+...
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.01 E-value=0.037 Score=27.46 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999967999999946
Q 000529 180 LTLLLGPPSSGKTTLLLALAG 200 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG 200 (1441)
+.+|.|++||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.00 E-value=0.036 Score=27.52 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=14.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998699996799999994
Q 000529 180 LTLLLGPPSSGKTTLLLALA 199 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~La 199 (1441)
+.+|.|++||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=93.00 E-value=0.023 Score=28.80 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=18.8
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 323315178995976999986999967999999
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLA 197 (1441)
Q Consensus 165 ~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~ 197 (1441)
..|+++.. |. ++|.|+|||||||.|-.
T Consensus 17 ~~~v~~~~-----g~-~lV~g~aGSGKTt~l~~ 43 (318)
T d1pjra1 17 QEAVRTTE-----GP-LLIMAGAGSGKTRVLTH 43 (318)
T ss_dssp HHHHHCCS-----SC-EEEEECTTSCHHHHHHH
T ss_pred HHHHHCCC-----CC-EEEEECCCCCHHHHHHH
T ss_conf 99982999-----99-89995298668999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.98 E-value=0.024 Score=28.71 Aligned_cols=26 Identities=35% Similarity=0.626 Sum_probs=21.7
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 848819999646999747899736189
Q 000529 879 FRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 879 i~pG~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
+|+. .+||+|...||||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8998-7999969985499999999823
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.97 E-value=0.053 Score=26.44 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999679999999469
Q 000529 180 LTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~ 201 (1441)
-+.|+|-|.+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 4888899999889999999779
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=92.96 E-value=0.03 Score=28.08 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.+.|+||+||||||+-+.|+.+.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69998899998799999999997
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.95 E-value=0.049 Score=26.69 Aligned_cols=35 Identities=29% Similarity=0.264 Sum_probs=26.5
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 520506788488199996469997478997361897
Q 000529 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 871 iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.+|... ..-.|.-+.++|+||+|||||...|..+-
T Consensus 4 ~lH~~~-v~~~g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 4 SMHGVL-VDIYGLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEEEE-EEETTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEEE-EEECCEEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 289999-99999999998089999899999999859
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.89 E-value=0.032 Score=27.84 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 881999964699974789973618978
Q 000529 881 PGVLTALMGVSGAGKTTLMDVLAGRKT 907 (1441)
Q Consensus 881 pG~~~ai~G~sGaGKTTLl~~L~g~~~ 907 (1441)
.|.++++-|+.||||||+.+.|+.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.88 E-value=0.019 Score=29.38 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|.+|+|||||++.|.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994999999999709
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=92.87 E-value=0.037 Score=27.45 Aligned_cols=17 Identities=41% Similarity=0.810 Sum_probs=8.9
Q ss_pred EEEEEECCCCCCHHHHH
Q ss_conf 69999869999679999
Q 000529 179 RLTLLLGPPSSGKTTLL 195 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL 195 (1441)
.+++|-||||+||||++
T Consensus 164 ~~~vI~G~pGTGKTt~i 180 (359)
T d1w36d1 164 RISVISGGPGTGKTTTV 180 (359)
T ss_dssp SEEEEECCTTSTHHHHH
T ss_pred CEEEEECCCCCCCEEHH
T ss_conf 85999768988752169
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.87 E-value=0.062 Score=26.02 Aligned_cols=18 Identities=56% Similarity=0.859 Sum_probs=9.0
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999646999747899736
Q 000529 885 TALMGVSGAGKTTLMDVL 902 (1441)
Q Consensus 885 ~ai~G~sGaGKTTLl~~L 902 (1441)
+||+|..|+|||||.+.|
T Consensus 5 v~iiGh~~~GKTtL~e~l 22 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEAL 22 (267)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999948898099999999
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.87 E-value=0.021 Score=29.09 Aligned_cols=21 Identities=43% Similarity=0.561 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|+||+|||||++.+.+.
T Consensus 15 IvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998789999998448
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.87 E-value=0.092 Score=24.93 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.++++|.+|+|||||++.+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.85 E-value=0.033 Score=27.81 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=21.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8819999646999747899736189
Q 000529 881 PGVLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 881 pG~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.+..+.|.|++|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 5987999869998299999999997
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.82 E-value=0.061 Score=26.06 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=13.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.+++|+..+|||||++.|.|..
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999724886999999997041
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.77 E-value=0.024 Score=28.70 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=10.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.+|-|+.||||||+++.|+.++
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998998789999999999999
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.77 E-value=0.044 Score=26.98 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999986999967999999946979
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.+..|+||.++|||||||.|.|...
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 9999889999979999999809987
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.75 E-value=0.037 Score=27.49 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.+.|.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998799998889999999998
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.72 E-value=0.034 Score=27.69 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|.+|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992989999999739
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.65 E-value=0.049 Score=26.65 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=20.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5976999986999967999999946979
Q 000529 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 176 ~pGelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
+||.+.+|-|+=|||||||.+.++..+.
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9982999966877658899999876422
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.59 E-value=0.04 Score=27.28 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=22.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 976999986999967999999946979
Q 000529 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 177 pGelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.+...+++||+|+||||.+-=||.++.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 977999989999988999999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.56 E-value=0.043 Score=27.07 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.++++|++|+|||||++.+.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.52 E-value=0.038 Score=27.36 Aligned_cols=26 Identities=31% Similarity=0.412 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88199996469997478997361897
Q 000529 881 PGVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 881 pG~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.|..+++-|+.||||||+.+.|+.+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98789998998887999999999999
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.51 E-value=0.039 Score=27.34 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
++|+|.+|+|||||++.+.+.
T Consensus 8 ivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 8 CVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999749
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.50 E-value=0.0077 Score=31.87 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.++++|.+++|||||++.|+|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.47 E-value=0.042 Score=27.13 Aligned_cols=49 Identities=8% Similarity=0.089 Sum_probs=28.6
Q ss_pred HCCCCCCEEECCCCCC-CHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
Q ss_conf 3398534222599799-9998999999999976713995999994592159
Q 000529 339 VGPALALFMDEISTGL-DSSTTFQIVNCFKQNIHINSGTAVISLLQPAPET 388 (1441)
Q Consensus 339 v~~~~vLlLDEpTSGL-Ds~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~ 388 (1441)
+....++++|++-.=. +......+...+-.. ...++.+|++...|..+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~-~~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTL-YLLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHH-HHTTCEEEEEESSCGGGC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHH-HHCCCEEEEECCCCCHHC
T ss_conf 76213010112655058657788999999987-631663899548751001
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.43 E-value=0.041 Score=27.20 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999646999747899736189
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
-++||-|++|||||||-+.|...
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89983799878899999999999
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.39 E-value=0.035 Score=27.59 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.036 Score=27.57 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999679999999469
Q 000529 180 LTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~ 201 (1441)
-.+|+|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.31 E-value=0.042 Score=27.14 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+|+|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.30 E-value=0.079 Score=25.36 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|.+|+|||||++.+.+.
T Consensus 8 i~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999719
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.30 E-value=0.042 Score=27.13 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|.+|+|||||++.+.+.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999993989999999829
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.26 E-value=0.043 Score=27.01 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964699974789973618
Q 000529 884 LTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g 904 (1441)
++||.|..||||||+.+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.23 E-value=0.038 Score=27.42 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.21 E-value=0.043 Score=27.08 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.+.|+||.||||||+.+.|+.+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.20 E-value=0.045 Score=26.94 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999679999999469
Q 000529 180 LTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~ 201 (1441)
-++|+|++|||||++++.+.-.
T Consensus 52 H~~I~G~tGsGKT~~l~~li~~ 73 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELAYT 73 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 5899907999689999999999
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.12 E-value=0.041 Score=27.19 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=14.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+|+|.+|+|||||++-+.+.
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997996989999999739
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.11 E-value=0.069 Score=25.70 Aligned_cols=35 Identities=31% Similarity=0.223 Sum_probs=27.4
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 652050678848819999646999747899736189
Q 000529 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 870 ~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.-+|. +...-.|.-+.+.|+||+|||||...|..+
T Consensus 4 t~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 4 TSLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 04889-999999999999808999999999999984
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.11 E-value=0.044 Score=26.96 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999967999999946
Q 000529 181 TLLLGPPSSGKTTLLLALAG 200 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG 200 (1441)
.+++|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999299999999971
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.07 E-value=0.041 Score=27.21 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.+-|.||+|+||||+.++++..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 6999789997487999999999
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.04 E-value=0.046 Score=26.84 Aligned_cols=30 Identities=43% Similarity=0.604 Sum_probs=27.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899597699998699996799999994697
Q 000529 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 173 g~i~pGelt~llGpsGSGKSTLL~~LaG~l 202 (1441)
|-+.+|++|.+.||||||||||+..++...
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 996673589980577747899999999998
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.04 E-value=0.037 Score=27.45 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++++|.+|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.02 E-value=0.048 Score=26.73 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|.+|+|||||++-+.+.
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.99 E-value=0.028 Score=28.26 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99964699974789973618
Q 000529 885 TALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 885 ~ai~G~sGaGKTTLl~~L~g 904 (1441)
++++|.+|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999088999999984
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.96 E-value=0.042 Score=27.10 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.+||+|.+.+|||||+++|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.93 E-value=0.056 Score=26.28 Aligned_cols=20 Identities=40% Similarity=0.341 Sum_probs=13.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999967999999946
Q 000529 181 TLLLGPPSSGKTTLLLALAG 200 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG 200 (1441)
.+++|+++||||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99994789849999999999
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.92 E-value=0.043 Score=27.03 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
-+.+.||+|+||||+.++|+..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 4898799997388999999850
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.86 E-value=0.05 Score=26.60 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+|+|.+|+|||||++-+.+.
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.81 E-value=0.055 Score=26.37 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998699996799999994
Q 000529 181 TLLLGPPSSGKTTLLLALA 199 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~La 199 (1441)
.+++|.+|+|||||++-+.
T Consensus 9 illlG~~~vGKTsll~~~~ 27 (221)
T d1azta2 9 LLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999899998899999895
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.73 E-value=0.052 Score=26.52 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999679999999469
Q 000529 180 LTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~ 201 (1441)
-.+|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.73 E-value=0.046 Score=26.84 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.++++|.+|+|||||++-+.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.70 E-value=0.054 Score=26.42 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|.+|+|||||++.+.+.
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999709
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.63 E-value=0.062 Score=26.01 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 48819999646999747899736189
Q 000529 880 RPGVLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 880 ~pG~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
+|...+.++||+|+|||.|.+.||..
T Consensus 50 ~p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 50 KPVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87658999778750069999999863
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.62 E-value=0.069 Score=25.71 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=13.4
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99996469997478997361
Q 000529 884 LTALMGVSGAGKTTLMDVLA 903 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~ 903 (1441)
-+||+|..|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.59 E-value=0.055 Score=26.36 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|.+|+|||||++-+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999859
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.56 E-value=0.041 Score=27.21 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
-+.++||+|+|||-|.+.||+..
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 47998999988999999999873
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.55 E-value=0.064 Score=25.92 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=24.1
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 84881999964699974789973618
Q 000529 879 FRPGVLTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 879 i~pG~~~ai~G~sGaGKTTLl~~L~g 904 (1441)
.+||.+++|-|.=||||||+.+.++.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79982999966877658899999876
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.53 E-value=0.06 Score=26.11 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.++++|...||||||+++|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.52 E-value=0.049 Score=26.65 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999986999967999999946979
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
...+++||+|+||||.+--||-++.
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~~~ 36 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKMFV 36 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999988999999999999
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.48 E-value=0.062 Score=26.04 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.++++|...||||||+++|+|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.43 E-value=0.064 Score=25.95 Aligned_cols=18 Identities=50% Similarity=0.730 Sum_probs=12.8
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999869999679999999
Q 000529 181 TLLLGPPSSGKTTLLLAL 198 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~L 198 (1441)
.+++|.+|+|||||++-+
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999989999988
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=91.37 E-value=0.054 Score=26.42 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999646999747899736189
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
-.++++|.+|+|||||++-+.+.
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89999999999889999887338
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.28 E-value=0.047 Score=26.78 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.21 E-value=0.064 Score=25.94 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964699974789973618
Q 000529 884 LTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g 904 (1441)
.++++|.+|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=91.15 E-value=0.076 Score=25.43 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|++.+|||||+++|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999958898099999999999
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.12 E-value=0.066 Score=25.86 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
+++|-|.-||||||+++.|..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.11 E-value=0.066 Score=25.84 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999646999747899736189
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.-+.|.||+|+|||++.+.||..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 07998896999889999998620
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=91.11 E-value=0.084 Score=25.16 Aligned_cols=28 Identities=43% Similarity=0.527 Sum_probs=22.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5976999986999967999999946979
Q 000529 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 176 ~pGelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
+|.-..+++||+|+|||.+.+.||-.+.
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 8766999978886248999999999835
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.08 E-value=0.07 Score=25.70 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964699974789973618
Q 000529 884 LTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g 904 (1441)
++||.|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.08 E-value=0.064 Score=25.92 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=22.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 976999986999967999999946979
Q 000529 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 177 pGelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.-.+.+++||+|+||||.+-=||-++.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998999989999998999999999999
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.07 E-value=0.07 Score=25.69 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.07 E-value=0.06 Score=26.10 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+|+|.+|+|||||++.+.+.
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996999999999719
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=0.071 Score=25.65 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++++|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.02 E-value=0.077 Score=25.43 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.01 E-value=0.051 Score=26.57 Aligned_cols=29 Identities=38% Similarity=0.651 Sum_probs=23.9
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 95976999986999967999999946979
Q 000529 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 175 i~pGelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
+++..-.+|-||||+|||+|.+++|+.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99887578878998763047788787718
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.01 E-value=0.055 Score=26.34 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++++|.+|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.00 E-value=0.056 Score=26.32 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++++|.+|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.95 E-value=0.081 Score=25.28 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999967999999946979
Q 000529 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.+|+||||.|||++...|+.++.
T Consensus 42 ~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 42 PLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
T ss_conf 67988898867799999999998
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.86 E-value=0.055 Score=26.36 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999646999747899736189
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
-.++|+|.+|+|||||++.+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 38999998992989999999719
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=90.72 E-value=0.054 Score=26.39 Aligned_cols=21 Identities=48% Similarity=0.632 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999646999747899736189
Q 000529 885 TALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 885 ~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
+.+-||+|.||||+.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 898897998788899999998
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.58 E-value=0.078 Score=25.36 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++++|.+|+|||||++-+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.57 E-value=0.061 Score=26.09 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=90.50 E-value=0.31 Score=21.51 Aligned_cols=31 Identities=45% Similarity=0.701 Sum_probs=27.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8995976999986999967999999946979
Q 000529 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 173 g~i~pGelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
|-++.|++|.+-||+|||||||...++....
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9866754789805876522799999999997
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.47 E-value=0.084 Score=25.19 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 69999869999679999999469799
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~l~~ 204 (1441)
+..++=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.42 E-value=0.098 Score=24.73 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.+.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.41 E-value=0.09 Score=24.99 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8199996469997478997361897
Q 000529 882 GVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 882 G~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
...+.|.||+|.||||+++.++...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8816888989998999999999997
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.40 E-value=0.073 Score=25.55 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999646999747899736189
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.+++++||+|+||||.+-=||.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999989999999999
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.40 E-value=0.075 Score=25.48 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999646999747899736189
Q 000529 885 TALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 885 ~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
+.+-||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.36 E-value=0.079 Score=25.36 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|++|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990889999999849
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.34 E-value=0.084 Score=25.18 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=21.6
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 884881999964699974789973618
Q 000529 878 AFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 878 ~i~pG~~~ai~G~sGaGKTTLl~~L~g 904 (1441)
-+-.|+..+|.|++|+|||||+..++.
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 645787556867999887899999999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.30 E-value=0.066 Score=25.85 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999646999747899736189
Q 000529 885 TALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 885 ~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
++++|..|+|||||++-+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.30 E-value=0.092 Score=24.92 Aligned_cols=28 Identities=36% Similarity=0.670 Sum_probs=24.1
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9597699998699996799999994697
Q 000529 175 VKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 175 i~pGelt~llGpsGSGKSTLL~~LaG~l 202 (1441)
+-.|+-.+|.|++|+|||||+..++...
T Consensus 40 igrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 40 IGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4578755686799988789999999977
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.27 E-value=0.082 Score=25.23 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.26 E-value=0.078 Score=25.39 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.++++|.+|+|||||++-+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.24 E-value=0.071 Score=25.63 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++++|.+|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.19 E-value=0.089 Score=25.01 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|.+|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999998998999999999709
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.02 E-value=0.072 Score=25.62 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++|+|.+|+|||||++-+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.99 E-value=0.12 Score=24.19 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999967999999946979
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
..++-||||+||||+.++++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 598888998758999999999846
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.99 E-value=0.097 Score=24.78 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|.+|+|||||++.+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999995989999999729
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.94 E-value=0.12 Score=24.08 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999967999999946979
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
-.++-||+|+||||+.+.++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 798889998759999999998210
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=89.81 E-value=0.089 Score=25.00 Aligned_cols=22 Identities=50% Similarity=0.490 Sum_probs=18.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999986999967999999946
Q 000529 179 RLTLLLGPPSSGKTTLLLALAG 200 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG 200 (1441)
|-.+|+|+.|||||||..+|..
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 0999994889809999999999
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.77 E-value=0.082 Score=25.23 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++++|.+|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=89.74 E-value=0.14 Score=23.66 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=13.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964699974789973618
Q 000529 884 LTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g 904 (1441)
++||.|.-||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999979999889999999998
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.74 E-value=0.066 Score=25.85 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++++|.+|+|||||++.|.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.71 E-value=0.1 Score=24.58 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=41.7
Q ss_pred HHHHCCCEEEEECCCCCCCHHHH------HHHHHHHHHHH----H-CCCEEEEEECCCCHHHHHHHCEEEEEECC--CEE
Q ss_conf 99619976698299999999999------99999999998----6-69989999647868999862758799259--499
Q 000529 1009 ELVANPSIIFMDEPTSGLDARAA------AIVMRTVRNTV----D-TGRTVVCTIHQPSIDIFEAFDELFLMKRG--GRE 1075 (1441)
Q Consensus 1009 ~L~~~p~il~lDEPTsGLD~~~a------~~i~~~l~~~~----~-~g~tvi~t~Hqps~~i~~~fD~illl~~g--G~~ 1075 (1441)
+-...|.||++||-=+=...+.. ..+...+.... . .+.-||+|+++|.. .|.-++ ..| .+.
T Consensus 93 A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~-----ld~al~-r~gRfd~~ 166 (258)
T d1e32a2 93 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS-----IDPALR-RFGRFDRE 166 (258)
T ss_dssp HHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGG-----SCGGGT-STTSSCEE
T ss_pred HHHCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCC-----CCHHHH-HCCCCCCE
T ss_conf 986499499852111322578877770689998775001101234688117975799310-----252454-24630232
Q ss_pred EEECCCCCCCHHHHHHHHHC
Q ss_conf 99718987500588898719
Q 000529 1076 VYVGPLGHHSCHLISYFEAI 1095 (1441)
Q Consensus 1076 vy~G~~g~~~~~~~~yF~~~ 1095 (1441)
++.+++.... -...++..
T Consensus 167 i~~~~P~~~~--R~~il~~~ 184 (258)
T d1e32a2 167 VDIGIPDATG--RLEILQIH 184 (258)
T ss_dssp EECCCCCHHH--HHHHHHHT
T ss_pred EECCCCCHHH--HHHHHHHH
T ss_conf 3789999889--99873220
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.69 E-value=0.093 Score=24.89 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++++|.+|+|||||++-+.+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.65 E-value=0.094 Score=24.85 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.++++|.+|+|||||++-+.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.57 E-value=0.095 Score=24.81 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.55 E-value=0.16 Score=23.44 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=13.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 81999964699974789973618
Q 000529 882 GVLTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 882 G~~~ai~G~sGaGKTTLl~~L~g 904 (1441)
..+++|.|..|.|||||...+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 40899977997888999999998
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=89.42 E-value=0.11 Score=24.51 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996469997478997361897
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
-.+.++|++|+|||||++-+.+..
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999987899999984488
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.35 E-value=0.1 Score=24.62 Aligned_cols=72 Identities=19% Similarity=0.223 Sum_probs=38.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCCCCCHHHHHHH
Q ss_conf 99766982999999999999999999999866998999964786899986275879925949999718987500588898
Q 000529 1013 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYF 1092 (1441)
Q Consensus 1013 ~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~vy~G~~g~~~~~~~~yF 1092 (1441)
+.+++++||.-. +...+...+...+.... ....++++.++.+. +... +.++ -+.+.+.++.. .++..+.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~-~~~~~i~~~~~~~~-i~~~-----l~sr-~~~i~~~~~~~--~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYS-NSTRFAFACNQSNK-IIEP-----LQSQ-CAILRYSKLSD--EDVLKRL 169 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTT-TTEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCCC-CCEEEEECCCCHHH-HHHH-----HHHH-HHHHHHCCCCH--HHHHHHH
T ss_conf 359999824432-32157787752011233-33366531474302-1067-----8877-77765313322--4567888
Q ss_pred HHC
Q ss_conf 719
Q 000529 1093 EAI 1095 (1441)
Q Consensus 1093 ~~~ 1095 (1441)
..+
T Consensus 170 ~~i 172 (224)
T d1sxjb2 170 LQI 172 (224)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 777
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=89.30 E-value=0.13 Score=23.88 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+++|+..+|||||+..|...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999937898989999999998
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.30 E-value=0.097 Score=24.77 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++++|.+|+|||||++-+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.16 E-value=0.1 Score=24.69 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHH---HCCCCC
Q ss_conf 9999869999679999999---469799
Q 000529 180 LTLLLGPPSSGKTTLLLAL---AGKLDP 204 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~L---aG~l~~ 204 (1441)
-.+++|+.|||||||..+| +|..+.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 9999958989989999999996485340
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.12 E-value=0.13 Score=24.01 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++|+|.+|+|||||++-+...
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.10 E-value=0.15 Score=23.50 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=24.2
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8488199996469997478997361897
Q 000529 879 FRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 879 i~pG~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.+|.--+|++|.-.+|||||++.|.|..
T Consensus 5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 5 VQPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9997089999724886999999997041
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.03 E-value=0.095 Score=24.84 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.+.++|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=88.94 E-value=0.16 Score=23.32 Aligned_cols=25 Identities=24% Similarity=0.088 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999679999999469799
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l~~ 204 (1441)
...|=|+-|+||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9999888667899999999998656
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.94 E-value=0.097 Score=24.77 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964699974789973618
Q 000529 884 LTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g 904 (1441)
.++++|.+|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.83 E-value=0.12 Score=24.23 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++|+|.+|+|||||++-+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.59 E-value=0.072 Score=25.59 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++|+|.+.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999789999899999999778
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.53 E-value=0.13 Score=23.91 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++++|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.46 E-value=0.15 Score=23.54 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 1999964699974789973618
Q 000529 883 VLTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g 904 (1441)
-.+.++|.+|+|||||++-+..
T Consensus 7 ~KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 7799998999988999998950
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.38 E-value=0.15 Score=23.50 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=21.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 4881999964699974789973618
Q 000529 880 RPGVLTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 880 ~pG~~~ai~G~sGaGKTTLl~~L~g 904 (1441)
+|--.+|++|..++|||||++.|..
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 9971999994789849999999999
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=88.34 E-value=0.13 Score=24.04 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
-+|++|.-.+|||||++.|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=88.12 E-value=0.15 Score=23.45 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964699974789973618
Q 000529 884 LTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g 904 (1441)
.++++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.11 E-value=0.16 Score=23.30 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99996469997478997361
Q 000529 884 LTALMGVSGAGKTTLMDVLA 903 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~ 903 (1441)
.+.++|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999899999899999884
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.10 E-value=0.13 Score=24.03 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.05 E-value=0.15 Score=23.59 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++|+|.+|+|||||++-+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.89 E-value=0.14 Score=23.69 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=37.6
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEE-EEEECCCCHHHHHHHCEEEEEECCCEEEEECCCCCCCHHHHHHH
Q ss_conf 97669829999999999999999999998669989-99964786899986275879925949999718987500588898
Q 000529 1014 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV-VCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYF 1092 (1441)
Q Consensus 1014 p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tv-i~t~Hqps~~i~~~fD~illl~~gG~~vy~G~~g~~~~~~~~yF 1092 (1441)
.+++++||.- .+.......+.+.+.... ..++ +++.+++. .+... +.++ ...+.+-|+.. .++..+.
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~--~~~~~~~~~~~~~-~i~~~-----i~sr-~~~i~~~~~~~--~~i~~~l 167 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYT--KNTRFCVLANYAH-KLTPA-----LLSQ-CTRFRFQPLPQ--EAIERRI 167 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHHHHCC--CCEEECCCCCCHH-HHHHH-----HHHH-HHHHCCCCCCC--CCCCCCC
T ss_conf 1899996632-000237899998863112--0023201267087-75999-----9988-75401235652--0001102
Q ss_pred HHC
Q ss_conf 719
Q 000529 1093 EAI 1095 (1441)
Q Consensus 1093 ~~~ 1095 (1441)
..+
T Consensus 168 ~~I 170 (227)
T d1sxjc2 168 ANV 170 (227)
T ss_dssp HHH
T ss_pred CCC
T ss_conf 122
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.86 E-value=0.15 Score=23.63 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699996799999994697
Q 000529 181 TLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l 202 (1441)
.++.||||+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.70 E-value=0.14 Score=23.78 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964699974789973618
Q 000529 884 LTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g 904 (1441)
.++++|.+|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.68 E-value=0.14 Score=23.78 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.+.++|.+|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.62 E-value=0.17 Score=23.20 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999679999999469
Q 000529 181 TLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~ 201 (1441)
++++|.+|+|||||++-+...
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999999679
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.61 E-value=0.14 Score=23.73 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.+.++|.+|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=87.54 E-value=0.089 Score=25.00 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
++.+.||+|.||||+++.++...
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89967899989999999999998
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.48 E-value=0.18 Score=23.06 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++++|.+|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.42 E-value=0.21 Score=22.63 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999967999999946979
Q 000529 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.+|+||||.|||++...||.++.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39983587544799999999998
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=87.32 E-value=0.19 Score=22.83 Aligned_cols=23 Identities=52% Similarity=0.772 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999967999999946979
Q 000529 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.+++||+|+|||-|-+.||..++
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 24418998637899999986443
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.30 E-value=0.19 Score=22.94 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996469997478997361897
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
..++|=|.-||||||+++.|+...
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998998885999999999987
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.25 E-value=0.18 Score=23.05 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 1999964699974789973618978
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGRKT 907 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~~~ 907 (1441)
-++.|-|.=|||||||++-|.....
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~~ 28 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQH 28 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8899864888999999999985678
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.18 E-value=0.15 Score=23.55 Aligned_cols=29 Identities=41% Similarity=0.596 Sum_probs=25.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89959769999869999679999999469
Q 000529 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 173 g~i~pGelt~llGpsGSGKSTLL~~LaG~ 201 (1441)
|-++.|++|.+.||||||||||+..++..
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98666336999648874889999999998
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.05 E-value=0.16 Score=23.40 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999646999747899736189
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
-.++|+|-+.+|||||+++|++-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.97 E-value=0.18 Score=22.96 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=24.7
Q ss_pred CCCEEECCCCCCCHH---HHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 534222599799999---8999999999976713995999994
Q 000529 343 LALFMDEISTGLDSS---TTFQIVNCFKQNIHINSGTAVISLL 382 (1441)
Q Consensus 343 ~vLlLDEpTSGLDs~---ta~~Iv~~Lr~~~~~~~~Tviisl~ 382 (1441)
-|||.||..+=+++. .+.+..+.|+-......-++|.+.+
T Consensus 117 ~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT 159 (387)
T d1qvra2 117 VILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATT 159 (387)
T ss_dssp EEEEECCC-------------------HHHHHTTCCCEEEEEC
T ss_pred EEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECC
T ss_conf 6987240888842777877413899999997378851666368
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=86.83 E-value=0.17 Score=23.23 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=10.8
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999869999679999999
Q 000529 181 TLLLGPPSSGKTTLLLAL 198 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~L 198 (1441)
.+++|+.++|||||+..|
T Consensus 27 i~iiGHVD~GKSTL~~~L 44 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNI 44 (245)
T ss_dssp EEEEECGGGTHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHH
T ss_conf 999952798999999999
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.54 E-value=0.18 Score=23.11 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999646999747899736189
Q 000529 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 883 ~~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
-.++++|.+|+|||||++-+.+.
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.47 E-value=0.17 Score=23.24 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++++|.+|+|||||++-+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996999999999719
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.41 E-value=0.17 Score=23.22 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=11.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998699996799999994
Q 000529 181 TLLLGPPSSGKTTLLLALA 199 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~La 199 (1441)
.+|+|+.++|||||+.+|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999688886999999999
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=86.34 E-value=0.22 Score=22.50 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999967999999946979
Q 000529 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
..|=|+-||||||+++.|+..+.
T Consensus 7 I~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 7 VYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEECSCTTSSHHHHHHHHTC---
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989867789999999999817
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.33 E-value=0.21 Score=22.57 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.+.++|.+|+|||||++-+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.22 E-value=0.23 Score=22.30 Aligned_cols=27 Identities=37% Similarity=0.463 Sum_probs=22.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 488199996469997478997361897
Q 000529 880 RPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 880 ~pG~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
+|.....++||+|+|||.|.+.|+...
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 876699997888624899999999983
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.08 E-value=0.21 Score=22.63 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=24.4
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8995976999986999967999999946979
Q 000529 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 173 g~i~pGelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
|.-.|.-..++.||||+|||.|-++||+++.
T Consensus 118 ~~~~~~g~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 118 GHRYASGMVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp TEEEESEEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1436886388877998508899999999863
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.07 E-value=0.25 Score=22.09 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999869999679999999469
Q 000529 179 RLTLLLGPPSSGKTTLLLALAGK 201 (1441)
Q Consensus 179 elt~llGpsGSGKSTLL~~LaG~ 201 (1441)
.+.+|.|+.||||||+.+.|+.+
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.87 E-value=0.25 Score=22.17 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646999747899736189
Q 000529 884 LTALMGVSGAGKTTLMDVLAGR 905 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~ 905 (1441)
.++++|.+|+|||||++-+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=85.76 E-value=0.19 Score=22.93 Aligned_cols=27 Identities=26% Similarity=0.131 Sum_probs=22.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 488199996469997478997361897
Q 000529 880 RPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 880 ~pG~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
+.+..+.+.||+|+|||++..+|++..
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 976769998999988899999999985
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.70 E-value=0.32 Score=21.42 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=23.4
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 7884881999964699974789973618
Q 000529 877 GAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 877 ~~i~pG~~~ai~G~sGaGKTTLl~~L~g 904 (1441)
..+-.|+..+|.|++|+|||||+..++.
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 5636788777667999898999999999
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=85.68 E-value=0.2 Score=22.79 Aligned_cols=19 Identities=37% Similarity=0.655 Sum_probs=15.8
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 9769999869999679999
Q 000529 177 PGRLTLLLGPPSSGKTTLL 195 (1441)
Q Consensus 177 pGelt~llGpsGSGKSTLL 195 (1441)
.|..++..|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEECCCCCCCCCCC
T ss_conf 9988999736879814221
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.55 E-value=0.23 Score=22.38 Aligned_cols=49 Identities=4% Similarity=0.053 Sum_probs=35.2
Q ss_pred HHHCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf 9619976698299999-999999999999999986699899996478689
Q 000529 1010 LVANPSIIFMDEPTSG-LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1058 (1441)
Q Consensus 1010 L~~~p~il~lDEPTsG-LD~~~a~~i~~~l~~~~~~g~tvi~t~Hqps~~ 1058 (1441)
...+.+++++|+--.= -+......+..++-...+.|+.+|+|...|..+
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~ 143 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQK 143 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGG
T ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
T ss_conf 87621301011265505865778899999998763166389954875100
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=85.06 E-value=0.24 Score=22.23 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=17.0
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 59769999869999679999
Q 000529 176 KPGRLTLLLGPPSSGKTTLL 195 (1441)
Q Consensus 176 ~pGelt~llGpsGSGKSTLL 195 (1441)
+.|...+..|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=84.90 E-value=0.37 Score=21.05 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699996799999994697
Q 000529 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1441)
Q Consensus 180 lt~llGpsGSGKSTLL~~LaG~l 202 (1441)
...+.||+++|||+++++|...+
T Consensus 106 ~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 106 TIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998589887789999999983
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=84.88 E-value=0.21 Score=22.63 Aligned_cols=24 Identities=25% Similarity=0.148 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999869999679999999469799
Q 000529 181 TLLLGPPSSGKTTLLLALAGKLDP 204 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG~l~~ 204 (1441)
..|=|+-||||||+++.|+..+..
T Consensus 8 I~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 8 IYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999888778899999999998734
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=84.74 E-value=0.36 Score=21.11 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998699996799999994
Q 000529 181 TLLLGPPSSGKTTLLLALA 199 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~La 199 (1441)
.+++|+.++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999447999999999999
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=84.72 E-value=0.38 Score=20.91 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=23.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 4881999964699974789973618978
Q 000529 880 RPGVLTALMGVSGAGKTTLMDVLAGRKT 907 (1441)
Q Consensus 880 ~pG~~~ai~G~sGaGKTTLl~~L~g~~~ 907 (1441)
..+-.++++|.+.+|||||+|.|.|++.
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 7752789986675443555425426615
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| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.66 E-value=0.33 Score=21.36 Aligned_cols=20 Identities=40% Similarity=0.541 Sum_probs=11.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999967999999946
Q 000529 181 TLLLGPPSSGKTTLLLALAG 200 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~LaG 200 (1441)
++++|..|+|||||++-+..
T Consensus 5 ivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999888999998840
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| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=84.58 E-value=0.14 Score=23.66 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=19.4
Q ss_pred EECCEEEEEECCCCCCHHH-HH-HHHH
Q ss_conf 9597699998699996799-99-9994
Q 000529 175 VKPGRLTLLLGPPSSGKTT-LL-LALA 199 (1441)
Q Consensus 175 i~pGelt~llGpsGSGKST-LL-~~La 199 (1441)
+++|+.++|.+|.|||||+ .| .++.
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~ 32 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVR 32 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 646994999979999787999999999
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| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.50 E-value=0.32 Score=21.40 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998699996799999994
Q 000529 181 TLLLGPPSSGKTTLLLALA 199 (1441)
Q Consensus 181 t~llGpsGSGKSTLL~~La 199 (1441)
.+++|+.++|||||...|+
T Consensus 9 i~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999478998999999999
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| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=84.38 E-value=0.25 Score=22.06 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 4881999964699974789973618
Q 000529 880 RPGVLTALMGVSGAGKTTLMDVLAG 904 (1441)
Q Consensus 880 ~pG~~~ai~G~sGaGKTTLl~~L~g 904 (1441)
+|.--+|++|.-.+|||||++.|.+
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9971899995889809999999999
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| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=84.37 E-value=0.27 Score=21.91 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=20.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 488199996469997478997361897
Q 000529 880 RPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 880 ~pG~~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.|+ -+.++||+|+|||-|.+.||...
T Consensus 67 p~~-niLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 67 SKS-NILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCC-CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCC-CEEEECCCCCCHHHHHHHHHHHC
T ss_conf 875-32441899863789999998644
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| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=83.02 E-value=0.38 Score=20.91 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
.++|=|+-|+||||+++.|+...
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998986778999999999981
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| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=82.57 E-value=0.36 Score=21.13 Aligned_cols=20 Identities=45% Similarity=0.747 Sum_probs=17.1
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 48819999646999747899
Q 000529 880 RPGVLTALMGVSGAGKTTLM 899 (1441)
Q Consensus 880 ~pG~~~ai~G~sGaGKTTLl 899 (1441)
+.|+.....|-||.|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
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| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.31 E-value=0.37 Score=21.02 Aligned_cols=20 Identities=45% Similarity=0.712 Sum_probs=17.2
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 59769999869999679999
Q 000529 176 KPGRLTLLLGPPSSGKTTLL 195 (1441)
Q Consensus 176 ~pGelt~llGpsGSGKSTLL 195 (1441)
+.|..++..|-||+|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88987999736778812051
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| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=82.25 E-value=0.18 Score=23.00 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996469997478997361897
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~ 906 (1441)
-+.|.|+.|+|||||.+.+++..
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iL 52 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALL 52 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 08998899852999999998737
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| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=81.41 E-value=0.38 Score=20.93 Aligned_cols=21 Identities=43% Similarity=0.749 Sum_probs=17.1
Q ss_pred ECCEEEEEECCCCCCHHHHHH
Q ss_conf 488199996469997478997
Q 000529 880 RPGVLTALMGVSGAGKTTLMD 900 (1441)
Q Consensus 880 ~pG~~~ai~G~sGaGKTTLl~ 900 (1441)
+.|+.....|.||.|||||-.
T Consensus 12 ~~~~valffGLSGTGKTTLs~ 32 (318)
T d1j3ba1 12 KEGDVAVFFGLSGTGKTTLST 32 (318)
T ss_dssp TTCCEEEEEECTTSCHHHHTC
T ss_pred CCCCEEEEECCCCCCCCCCCC
T ss_conf 999889997368798142210
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| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.33 E-value=0.59 Score=19.70 Aligned_cols=27 Identities=33% Similarity=0.612 Sum_probs=15.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 976999986999967999999946979
Q 000529 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1441)
Q Consensus 177 pGelt~llGpsGSGKSTLL~~LaG~l~ 203 (1441)
.|++++++||=.|||||-|--.+.+..
T Consensus 1 ~G~L~li~GpMfsGKTt~Li~~~~~~~ 27 (133)
T d1xbta1 1 RGQIQVILGPMFSGKSTELMRRVRRFQ 27 (133)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 947999991416789999999999999
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| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.88 E-value=0.32 Score=21.41 Aligned_cols=63 Identities=16% Similarity=0.310 Sum_probs=38.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 2223346988776798898899999999619976698299999999999999999999986699899996478
Q 000529 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1055 (1441)
Q Consensus 983 ~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~t~Hqp 1055 (1441)
+.=.++-.||.-.++++-..-+. +.+--+++. .+..|+-+.+...+..+. +.+..+++.+...
T Consensus 96 ~~inliDtPGh~dF~~ev~~al~-----~~D~allVV-da~eGv~~qT~~~~~~a~----~~~~p~i~viNKi 158 (341)
T d1n0ua2 96 FLINLIDSPGHVDFSSEVTAALR-----VTDGALVVV-DTIEGVCVQTETVLRQAL----GERIKPVVVINKV 158 (341)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHH-----TCSEEEEEE-ETTTBSCHHHHHHHHHHH----HTTCEEEEEEECH
T ss_pred EEEEEECCCCCHHHHHHHHHHHH-----HCCCEEEEE-ECCCCCCHHHHHHHHHHH----HCCCCEEEEEECC
T ss_conf 37999737873889999998875-----237249998-656682046999999998----7699869998772
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| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.81 E-value=0.29 Score=21.67 Aligned_cols=24 Identities=42% Similarity=0.480 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999964699974789973618978
Q 000529 884 LTALMGVSGAGKTTLMDVLAGRKT 907 (1441)
Q Consensus 884 ~~ai~G~sGaGKTTLl~~L~g~~~ 907 (1441)
-..|+|++|.|||++..-|+.+..
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|