Citrus Sinensis ID: 000537

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430-----
MSWSKMWAVTVTCSFKVVNKLSGMFLLYSLLIMIYIMSYSLQKMKKMDVYLRCLLEIEWNIRCSNFSCWTFLFLVRCSGFKGDMRDIATYPLYGLEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV
ccccccEEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHEEEEEEcccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHcccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHcccccEEEccHHHHHHccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccEEEEccccHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHccccccEEEEEEccccccccccccccEEEEEcccccHHHHHHHHHHHHHccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcc
ccccHEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEcccccHHHHHHHHEccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccEEEccccccccccccccccEEEEccccccccEEEcccccccEccccccccccHcHcccccccccccccccEEEEEEEEcccccccccccccEEEccccccccccccccccEEEcccccccccccccccccccccHHHHHcHHHHcccccHHcccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccHcccccccccEEcccccEEEEEcccccccEEcccccEEccccEEEEEEccccccccccccccccccccccccccccccccccEEEcccccccEEEEccccHHHHHHHcccccccccccccccccccccHcccccccccHccHHHHcccccccHccccccccccccccccccHcccccccccccccccccccEcccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccEEccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHccccccccHHHHHHccccccccccccEEEEEcHHHHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHcccEEEEEHHHHHHHccccccHHHccHHccccccccccccccccccccccccccccccccccEEEccccccccccccHHHEEEEEEEEHHHHHccccHHHHHHHHHHHHHccEEEEcccHHHccHHHHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccEEEccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHcccccccccccHHHHHHHcHHHHHHHHHHHHcccccccccccccccccEEcccccHHcHHHHHHHccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHccHHcccccHHHHHcccccccccccHHHHHHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHccccccEEEEEEEEcccccEEEEEccEEEEEcccccHHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHccccccHHHccccHHHHHHHHcc
MSWSKMWAVTVTCSFKVVNKLSGMFLLYSLLIMIYIMSYSLQKMKKMDVYLRCLLEIEwnircsnfscwTFLFLVRcsgfkgdmrdiatyplygleisgaesgglgdsssqlepteqkcsplqtcsasfsdwfnqnsgtccpesvgisqfetpgcstassfsegdgyhfldhrntldfgvlgakagirfghvgshidsrsvdaspssitenfderyghygasignrlgssvpegnlctyvdvpytdaevsshnvastdstichgseiisdddyysampcyintgdtifgdpssfnfqhllsseetatkpkdeegeftteiacsssglvlnaqggpgkgsmlkvpaidyldakrqcedsknglpiygnslsnitlgdgkrsaqpctyshshssrtKQMVFAkdegnddlfpcwstvsdsvepideavgrnssyhdgcnsfpfkdsgqsfiglspsllsqnqvvhAKEEHEDLILESKRARFCQEicdgsssrspidgrhlslnlngsrqyfpyaqpstlnkkeldgVKEDMEAEIKTRSMASHLlklspesiqsnssdckshvddepdiciledisqparsnqslvlgktlsmnrsacsnhsvalgkpvvtsqhssysdypgypgvpltglggmkskaSDERLILQVAMQgisqpnaeasapdgvlavPLLRHQRIALSWMVQketsslhcsggiladdqglgkTISTIALILkerppsfrteddnKRQLEtlnldeedngiqvngldlvkqesdycrvvpngssaksfnfveqakgrpaagtlvvcpTSVLRQWAEELRNKVTSKGSLSVLVYhgssrtkdpcelakfdVVITTYSIVSmevpkqplgdkedeeekmkiegedlppmycssskkrkcppssdrkgskqkkgpdgllldivagplakvgWFRVVLDEAQSIKNHRTQVARACWGLrakrrwclsgtpiQNAIDDLYSYFrflrydpfavYKSFCSMikvpisknpvkGYKKLQAVLKTIMLRRtkgtlldgepiinlppkvimlkqvdftdeerdFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQacdhpllvkgfdsnslLRSSVEMAKKLPQERQMYLLNCLEASLAIcgicndppedaVVSICGhvfcnqcicerltaddnqcptrnckirlslssVFSKAtlnnslsqrqpgqeiptdysdsklveapscegvwynSSKIKAALEVLQSLakprgntvtnhslrhsfngsiccpgdsndlhggdtldniSDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDkavkdfntlPEVSVMIMSLKAASLGLNMVAACHVLLLDlwwnpttedqaidrahrigqtrpvSVLRLTVKNTVEDRILALQQKKREMVASafgedetggqqtrltvddlNYLFMV
mswskmwaVTVTCSFKVVNKLSGMFLLYSLLIMIYIMSYSLQKMKKMDVYLRCLLEIEWNIRCSNFSCWTFLFLVRCSGFKGDMRDIATYPLYGLEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVgshidsrsvdaspSSITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHnvastdsticHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPctyshshssrtKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEIcdgsssrspidgRHLSLNLNGSRQyfpyaqpstlnkkeldGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILedisqparsNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIlkerppsfrteddNKRQLEtlnldeedngiqVNGLDLVKQESDYCRVVPngssaksfnfVEQAkgrpaagtlvvCPTSVLRQWAEELrnkvtskgslSVLVYhgssrtkdpcelAKFDVVITTYSIvsmevpkqplgdkedeeekmkiegedlppmycssskkrkcppssdrkgskqkkgpdgLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKvpisknpvkgyKKLQAVLKTIMLRrtkgtlldgepiinlppkvIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVkgfdsnsllRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLtaddnqcptRNCKIRLSLSSVFSKATlnnslsqrqpgqeiptdysdsKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCsidsiklggEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDrahrigqtrpvsvlrltvkntvEDRILALQQKKREMVASafgedetggqqtrltvddlnYLFMV
MSWSKMWAVTVTCSFKVVNKLSGmfllysllimiyimsyslQKMKKMDVYLRCLLEIEWNIRCSNFSCWTFLFLVRCSGFKGDMRDIATYPLYGLEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGdkedeeekmkiegedLPPMYcssskkrkcppssdrkGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV
***SKMWAVTVTCSFKVVNKLSGMFLLYSLLIMIYIMSYSLQKMKKMDVYLRCLLEIEWNIRCSNFSCWTFLFLVRCSGFKGDMRDIATYPLYGLEIS**************************CSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHI***************FDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQH****************************LVL***********LKVPAIDYLDAKR*C*****GLPIYGNSL**I*********************************DDLFPCWSTVSDSV***************GCNSFPF******FIGL*******************LILESKRARFCQEIC**********************************************************************************ICIL**************************************************Y**V****************LILQVA***************GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK***************************IQVNGLDLVKQESDYCRVVPNG**AKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM*****************************************************GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLR**********QERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVF*****************************APSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPG*******************KIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ***********************TVDDLNYLF**
****KMWAVTVTCSFKVVNKLSGMFLLYSLLIMIYIMSYSLQKMKKMDVYLRCLLEIEWNIRCSNFSCWTFLFLVRCSGFKGDMRDIAT***********************************CSASFSDWFN***********************************LDHRNTLDFGVLGA*****************************DERYG***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************RLILQ*********************VPLLRHQRIALSWMVQ**************DDQGLGKTISTIALILKERPPSFRTE****************************************************KGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQP************************************************LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLL**EPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQF***********NYVNILLMLLRLRQACDHPLLVKGF****************PQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQR***************************SSKIKAALEV*****************************DSNDLHGGDTLDNISDENEKI***CSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT****************PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKRE**********************LNYLFMV
MSWSKMWAVTVTCSFKVVNKLSGMFLLYSLLIMIYIMSYSLQKMKKMDVYLRCLLEIEWNIRCSNFSCWTFLFLVRCSGFKGDMRDIATYPLYGLEISGAES********************QTCSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHID**********ITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEE***********FTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLG*******************KQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSP**************DDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQ************KIEGEDLPPMY**********************GPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV
*SWSKMWAVTVTCSFKVVNKLSGMFLLYSLLIMIYIMSYSLQKMKKMDVYLRCLLEIEWNIRCSNFSCWTFLFLVRCSGFKGDMRDIATYPLYGLEI*****************************************TCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVK*************************************EPDICILEDISQ******SLV****LSMN*******************************************ASDERLILQVAMQGISQ**AEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER***************************************************S******AKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQ*****************************************KQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQ*********************C*GVWYNSSKIKAALEVLQSLA*******************************GDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSWSKMWAVTVTCSFKVVNKLSGMFLLYSLLIMIYIMSYSLQKMKKMDVYLRCLLEIEWNIRCSNFSCWTFLFLVRCSGFKGDMRDIATYPLYGLEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1435 2.2.26 [Sep-21-2011]
O601771040 Uncharacterized ATP-depen yes no 0.452 0.624 0.292 5e-92
Q9FNI61029 Putative SWI/SNF-related no no 0.412 0.575 0.317 6e-92
O13762897 Uncharacterized ATP-depen no no 0.436 0.697 0.303 1e-83
P31244790 DNA repair protein RAD16 yes no 0.356 0.646 0.309 6e-82
P0CQ661198 DNA repair protein RAD5 O yes no 0.441 0.528 0.297 9e-81
P0CQ671198 DNA repair protein RAD5 O N/A no 0.441 0.528 0.298 1e-80
Q145271009 Helicase-like transcripti yes no 0.354 0.503 0.302 1e-77
Q5ACX11084 DNA repair protein RAD5 O N/A no 0.389 0.515 0.272 3e-65
Q4WVM11245 DNA repair protein rad5 O no no 0.441 0.509 0.265 8e-65
Q5BHD61202 DNA repair protein rad5 O yes no 0.427 0.509 0.271 5e-64
>sp|O60177|YG42_SCHPO Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC23E6.02 PE=3 SV=1 Back     alignment and function desciption
 Score =  340 bits (872), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 234/801 (29%), Positives = 386/801 (48%), Gaps = 152/801 (18%)

Query: 649  QGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTI 708
            Q ++ P      P G++   L+ HQ+  L W+ + E SS    GGILADD GLGKT+  +
Sbjct: 371  QLVNDPTIREGTPAGLIPT-LMEHQKEGLMWLKRLEESS--KKGGILADDMGLGKTVQAL 427

Query: 709  ALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSF 768
            AL++  RP                                           P   S K+ 
Sbjct: 428  ALLVT-RP-------------------------------------------PESKSVKT- 442

Query: 769  NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE-LAK 827
                         TL++ P S+L+QW  E+  K+      +V ++HGSS+     E L  
Sbjct: 443  -------------TLIITPVSLLQQWHNEILTKIAPSHRPTVYIHHGSSKKHKIAEQLMS 489

Query: 828  FDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSK 887
            +D+V+TTY++++ E   +   DK  E+     + E LP                      
Sbjct: 490  YDIVLTTYNVIAYEFKNKMAYDKSIEDNAPIKKFEHLP---------------------- 527

Query: 888  QKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPI 947
                              +  W+RV+LDEAQ+IKN  T  AR C  L +  RWCLSGTP+
Sbjct: 528  ----------------FFEAEWYRVILDEAQTIKNRNTLAARGCCLLESTYRWCLSGTPM 571

Query: 948  QNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN--PVKGYKKLQAVLKTIMLRRTKG 1005
            QN +++ YS  +FLR  P++ + SF     +P+S N       K+ + +LK ++LRRTK 
Sbjct: 572  QNGVEEFYSLIKFLRIKPYSDWSSFSKDFTIPLSSNINTSAPMKRFRGLLKAVLLRRTKN 631

Query: 1006 TLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILL 1065
            T +DG+PI+ LPPK  +  + D +  E +FY+ L+  ++ Q ++Y   GT+  +Y ++L+
Sbjct: 632  TKIDGKPILTLPPKTAVKSETDLSSSEMEFYNTLQSGAQIQMRKYLQEGTITTHYGSLLV 691

Query: 1066 MLLRLRQACDHPLLVKGF-----DSNSLLRSSVEMAKKLPQE--RQMYLLNCLEASLAIC 1118
            +LLRLRQAC HP L+        D++S    +  +  ++  E   ++ L+  L+     C
Sbjct: 692  LLLRLRQACCHPWLIVAREAAVDDNDSFQAKNRAIYNQIYPEAVNRLKLIETLQ-----C 746

Query: 1119 GICNDPPEDAVVSI-CGHVFCNQCICERLTADDN---QCPTRNCKIRLSLSSVF--SKAT 1172
             +C D   + ++ + CGH  C +C+   +T+ ++   Q    N   + S+   +  ++  
Sbjct: 747  SLCMDVVAELLIIVPCGHFLCRECLTHVITSSEDMAKQTSNENISPKCSVCEEYIDTERL 806

Query: 1173 LNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNH 1232
            L+ +L +R  G   P   +D+KL                     + + L K   N + N 
Sbjct: 807  LSYALFRRYSGMA-PIVDADNKL-----------------RTENISELLPKQYSNILENR 848

Query: 1233 SLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKM 1292
             +       +    D         ++   +  ++I  K   D I       ++FSQ+   
Sbjct: 849  QM------GMKIFTDPKHWTTSTKIEKALNAVKEIIKKQPTDKI-------LIFSQFVSF 895

Query: 1293 LDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAAC 1352
            L+L     +   I+Y    G +S   R++A+ +F   P V V+++SLKA ++GLN+  A 
Sbjct: 896  LELFTVPFRQEGIKYLMYTGGLSTAERNQALINFEVDPNVRVLLISLKAGNVGLNLTCAN 955

Query: 1353 HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF 1412
            HV++LD +WNP  E+QA+DRAHRIGQ +PV++LR+   NT+E+R+LALQ +KRE++ SA 
Sbjct: 956  HVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEERVLALQDRKRELIDSAL 1015

Query: 1413 GEDETGGQQTRLTVDDLNYLF 1433
            GE +   + +RL   +L++LF
Sbjct: 1016 GE-KGLREISRLNTKELSFLF 1035

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1 Back     alignment and function description
>sp|O13762|YF2C_SCHPO Uncharacterized ATP-dependent helicase C17A2.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17A2.12 PE=3 SV=1 Back     alignment and function description
>sp|P31244|RAD16_YEAST DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD16 PE=1 SV=1 Back     alignment and function description
>sp|P0CQ66|RAD5_CRYNJ DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=RAD5 PE=3 SV=1 Back     alignment and function description
>sp|P0CQ67|RAD5_CRYNB DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RAD5 PE=3 SV=1 Back     alignment and function description
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2 Back     alignment and function description
>sp|Q5ACX1|RAD5_CANAL DNA repair protein RAD5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RAD5 PE=3 SV=1 Back     alignment and function description
>sp|Q4WVM1|RAD5_ASPFU DNA repair protein rad5 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rad5 PE=3 SV=2 Back     alignment and function description
>sp|Q5BHD6|RAD5_EMENI DNA repair protein rad5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rad5 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1435
3594948721430 PREDICTED: uncharacterized protein LOC10 0.891 0.894 0.597 0.0
1478522791435 hypothetical protein VITISV_020421 [Viti 0.872 0.872 0.578 0.0
3565576651307 PREDICTED: uncharacterized protein LOC10 0.838 0.920 0.540 0.0
3565466631337 PREDICTED: uncharacterized protein LOC10 0.795 0.853 0.545 0.0
2960809081187 unnamed protein product [Vitis vinifera] 0.747 0.903 0.516 0.0
4494343501286 PREDICTED: ATP-dependent helicase ULS1-l 0.781 0.872 0.556 0.0
3574464411314 Helicase-like transcription factor [Medi 0.839 0.916 0.511 0.0
4494796151239 PREDICTED: ATP-dependent helicase ULS1-l 0.781 0.905 0.555 0.0
3565462661356 PREDICTED: uncharacterized protein LOC10 0.873 0.924 0.505 0.0
224116170800 chromatin remodeling complex subunit [Po 0.550 0.987 0.735 0.0
>gi|359494872|ref|XP_002263027.2| PREDICTED: uncharacterized protein LOC100265351 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1456 bits (3770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 810/1356 (59%), Positives = 962/1356 (70%), Gaps = 77/1356 (5%)

Query: 114  PTEQKCSPLQTCSASFSDWFNQNSG--TCCPESVGISQ--------------FETPGCST 157
            P+    SP+++ S S +DW +  SG  TCC E  G+SQ              +E P CST
Sbjct: 118  PSAHAGSPVRSGSGSLNDWISHVSGQETCCKERSGVSQDALSYNRVDSKEIQYEIPNCST 177

Query: 158  ASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHIDSRSVDASPSSITENFDERYG 217
            A SF+ G+  +  D+ N LD   L      +F H+G  I S    AS S +TEN D   G
Sbjct: 178  AFSFAAGNSNYASDYTNGLDLNHLNGDTEAQFKHMGVEIHSEY--ASNSMVTENSDIGLG 235

Query: 218  HYGASIGNRLGSSVPEGNL-CTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDD-DYYS 275
             Y  +I    G  V  G   CT + +   DA++SSH+V  T+S+IC   +++ ++ + YS
Sbjct: 236  SYEPAIEKSTGDLVTGGKYSCTSMTISLRDADISSHDVNHTESSICQIPDVVYENSEDYS 295

Query: 276  AMPCYINTGDTIFGDPSS------FNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVL 329
            A+   ++   ++F DPSS      F+ Q + SSEE     KDE  E + E  C +S + L
Sbjct: 296  AVQYCLSADGSLFSDPSSQYMPDCFDLQFMPSSEEMLINMKDENEELSAENTCLNSKMNL 355

Query: 330  NAQGGPGKGSMLKVPAIDYLDAKR---QCEDSKNGLPIYGNSLSNITLG--DGKRSAQPC 384
            +        S ++    +Y D K      E S    P  GNS SN   G  D  RS Q  
Sbjct: 356  SQDARAS--SFVQKGLNNYSDVKGLNFNHEGSNYVSPTSGNSSSNAGYGSNDDIRSIQLS 413

Query: 385  TYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDS 444
            T S S+ S  ++ +  KDE  D+L      +    E +DEAV    S       F  K+S
Sbjct: 414  TCSQSYMSNKRRAICIKDERKDELVA--PGICQPNEVVDEAVNDRFSLGVDARVFADKNS 471

Query: 445  GQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLN 504
             Q      P + S+  +  AK+E+EDL L SKR R CQ I D  S RS   G  L     
Sbjct: 472  RQMLSCFPPFISSKKNLFDAKDENEDLYLASKRPRHCQVIGDELSGRSQSGGGPLD---T 528

Query: 505  GSRQYFPYAQPSTLNKKELDGVKEDMEAE-IKTRSMASHLLKLSPESIQSNSSDCKSHVD 563
             S Q  P  + ST++ K+LD +K++ E + I+ +SM S+L K+SPESIQSNS D +SH+D
Sbjct: 529  VSEQLIPSVKQSTVSNKQLDYIKDEKEGKLIQPKSMGSYLSKVSPESIQSNSLDHRSHID 588

Query: 564  DEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYP 623
            D+ DICILEDIS+P RSN SL+LGK+L                  V++Q   YSD     
Sbjct: 589  DDTDICILEDISEPVRSNSSLLLGKSL------------------VSTQR--YSD----- 623

Query: 624  GVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQK 683
             +  TG+ GM+++ +DERLI +VA+Q +SQP +EAS PDGVL VPLLRHQRIALSWMVQK
Sbjct: 624  SLHNTGVVGMRNRTNDERLIFRVALQDLSQPKSEASPPDGVLTVPLLRHQRIALSWMVQK 683

Query: 684  ETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRT--EDDNKRQLETLNLDEEDNGI 741
            ET+SLHCSGGILADDQGLGKT+STIALILKERP S R   ED  + +LETLNLDE+D+  
Sbjct: 684  ETASLHCSGGILADDQGLGKTVSTIALILKERPTSSRACQEDMKQSELETLNLDEDDD-- 741

Query: 742  QVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNK 801
            +V  LD  KQ +D C V+ +GSS K  N   Q KGRPAAGTLVVCPTSVLRQWAEELR+K
Sbjct: 742  KVPELDGTKQAADSCEVMSHGSSMKKENAFVQGKGRPAAGTLVVCPTSVLRQWAEELRSK 801

Query: 802  VTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEG 861
            VTSK +LSVLVYHGS+RTKDPCELA++DVV+TTYSIVSMEVPKQPL DK+DEE K+K E 
Sbjct: 802  VTSKANLSVLVYHGSNRTKDPCELARYDVVLTTYSIVSMEVPKQPLVDKDDEE-KVKPEA 860

Query: 862  EDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIK 921
              + P   SS+KKRK PPSSD+K  K KK  DG LL+ VA PLA+VGWFRVVLDEAQSIK
Sbjct: 861  H-VSPTELSSNKKRKYPPSSDKKCLKDKKAMDGALLESVARPLARVGWFRVVLDEAQSIK 919

Query: 922  NHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPIS 981
            NHRTQVARACWGLRAKRRWCLSGTPIQNA+DDLYSYFRFLRYDP+AVYKSFCS IKVPI+
Sbjct: 920  NHRTQVARACWGLRAKRRWCLSGTPIQNAVDDLYSYFRFLRYDPYAVYKSFCSTIKVPIT 979

Query: 982  KNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEI 1041
            +NP  GY+KLQAVLKTIMLRRTKGTLLDGEPII LPPK + LK+VDF+ EERDFYS+LE 
Sbjct: 980  RNPTNGYRKLQAVLKTIMLRRTKGTLLDGEPIITLPPKSVELKKVDFSKEERDFYSRLEA 1039

Query: 1042 NSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQ 1101
            +SR QF+ YAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG++SNS+ RSSVEMAKKL +
Sbjct: 1040 DSRAQFEVYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGYNSNSVWRSSVEMAKKLSR 1099

Query: 1102 ERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIR 1161
            E+Q+YLLNCLE SLAICGICNDPPEDAVVSICGHVFCNQCICE LT+D+NQCP+ NCK++
Sbjct: 1100 EKQIYLLNCLEGSLAICGICNDPPEDAVVSICGHVFCNQCICEHLTSDENQCPSTNCKVQ 1159

Query: 1162 LSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEA--PSCEGVWYNSSKIKAALEVLQ 1219
            L++SSVFSKATL +SLS   P Q+I    S S+LVEA  P  E   Y+SSKI+AALEVLQ
Sbjct: 1160 LNVSSVFSKATLKSSLSDL-PVQDISHHCSGSELVEAHDPCPESRLYDSSKIRAALEVLQ 1218

Query: 1220 SLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLG 1279
            SL+KPR  T+ N SL+ S N +     + +D H    L    DE   +  K SI  +   
Sbjct: 1219 SLSKPRDCTLGNSSLKSS-NETTSGLENLSDSHSEGLLKETCDEKNVVLDKGSITVV--- 1274

Query: 1280 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1339
            GEKAIVFSQWT+MLDLLE+ LK+SSIQYRRLDGTMSV ARDKAVKDFNTLPEVSVMIMSL
Sbjct: 1275 GEKAIVFSQWTRMLDLLESCLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSL 1334

Query: 1340 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1399
            KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPV+VLRLTVK+TVEDRILA
Sbjct: 1335 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILA 1394

Query: 1400 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1435
            LQQKKREMVASAFGEDETG +QTRLTVDDL YLFMV
Sbjct: 1395 LQQKKREMVASAFGEDETGSRQTRLTVDDLKYLFMV 1430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147852279|emb|CAN82215.1| hypothetical protein VITISV_020421 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356557665|ref|XP_003547135.1| PREDICTED: uncharacterized protein LOC100805307 [Glycine max] Back     alignment and taxonomy information
>gi|356546663|ref|XP_003541743.1| PREDICTED: uncharacterized protein LOC100792901 [Glycine max] Back     alignment and taxonomy information
>gi|296080908|emb|CBI18752.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449434350|ref|XP_004134959.1| PREDICTED: ATP-dependent helicase ULS1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357446441|ref|XP_003593498.1| Helicase-like transcription factor [Medicago truncatula] gi|355482546|gb|AES63749.1| Helicase-like transcription factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|449479615|ref|XP_004155652.1| PREDICTED: ATP-dependent helicase ULS1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356546266|ref|XP_003541550.1| PREDICTED: uncharacterized protein LOC100802436 [Glycine max] Back     alignment and taxonomy information
>gi|224116170|ref|XP_002317230.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222860295|gb|EEE97842.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1435
TAIR|locus:20084701280 EDA16 "embryo sac development 0.402 0.450 0.525 8.6e-250
TAIR|locus:2008096981 AT1G50410 [Arabidopsis thalian 0.558 0.816 0.560 3.3e-230
TAIR|locus:20953601047 AT3G20010 [Arabidopsis thalian 0.324 0.444 0.530 1.7e-220
TAIR|locus:2089318638 AT3G16600 [Arabidopsis thalian 0.078 0.175 0.654 2e-138
POMBASE|SPBC23E6.021040 rrp2 "ATP-dependent DNA helica 0.202 0.279 0.342 2.9e-90
ASPGD|ASPL00000301721184 AN5483 [Emericella nidulans (t 0.165 0.200 0.380 2.6e-86
TAIR|locus:21583571277 AT5G43530 [Arabidopsis thalian 0.184 0.207 0.339 1.9e-84
ZFIN|ZDB-GENE-030131-3306942 hltf "helicase-like transcript 0.179 0.273 0.349 1.2e-82
TAIR|locus:2207175833 AT1G05120 [Arabidopsis thalian 0.104 0.180 0.468 2.4e-81
DICTYBASE|DDB_G0272082 1838 DDB_G0272082 "CHR group protei 0.132 0.103 0.408 1.5e-80
TAIR|locus:2008470 EDA16 "embryo sac development arrest 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1442 (512.7 bits), Expect = 8.6e-250, Sum P(5) = 8.6e-250
 Identities = 324/616 (52%), Positives = 413/616 (67%)

Query:   594 RSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQ 653
             +SA  +  +A+  PVV+S++S+ S             GG+K +++ E +I Q A+Q ++Q
Sbjct:   488 QSAIPHRPLAMKMPVVSSEYSTVSHN-------FNQSGGLKLQSNKENMIFQAALQDLTQ 540

Query:   654 PNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 713
             PN+EA  PDGVL VPLLRHQRIALSWM QKETS   CSGGILADDQGLGKT+STIALILK
Sbjct:   541 PNSEAILPDGVLTVPLLRHQRIALSWMAQKETSGFPCSGGILADDQGLGKTVSTIALILK 600

Query:   714 ERP-PSFRTEDDNKRQLETLNLDE-EDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFV 771
             ER  P+   E+  K+++  L  +  E   ++ +G     +  ++ +++ N +     + V
Sbjct:   601 ERSKPAQACEESTKKEIFDLESETGECAPLKPSGRS---KHFEHSQLLSNENKVGG-DSV 656

Query:   772 EQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVV 831
              +  GRPAAGTLVVCPTSV+RQWA+EL  KVTS+ +LSVLVYHGSSRTKDP ELAK+DVV
Sbjct:   657 GKVTGRPAAGTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVV 716

Query:   832 ITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGSKQKKG 891
             +TT+SIVSMEVPKQPL                    +                GSK+KK 
Sbjct:   717 VTTFSIVSMEVPKQPLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKK-GSKKKK- 774

Query:   892 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAI 951
                  ++ ++GPLAKV WFRVVLDEAQSIKN++TQVARACWGLRAKRRWCLSGTPIQN+I
Sbjct:   775 -----VEFLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSI 829

Query:   952 DDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGE 1011
             DDLYSYFRFL+YDP++ Y  FCS IK PI++NPVKGY+KLQA+LKT+MLRRTKG+LLDG+
Sbjct:   830 DDLYSYFRFLKYDPYSSYVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDGK 889

Query:  1012 PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLR 1071
             PII+LPPK I L++VDFT EERDFYS+LE  SR QF+EYA AGTVKQNYVNILLMLLRLR
Sbjct:   890 PIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLR 949

Query:  1072 QACDHPLLVKGFDSNSLLRSSVEMAKK-LPQERQMYLLN-CLEAS----LAICG--ICND 1123
             QACDHPLLV G + +    SSV +AKK +  +  + +   C +A      ++CG   C  
Sbjct:   950 QACDHPLLVNG-EYSFTWESSVGLAKKQIQSDASLAICGICNDAPEDAVASVCGHVFCKQ 1008

Query:  1124 PPEDAVVSICGHVFCNQCICE-RLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQP 1182
                + +     H  C    C  RLT       TR   +  ++  +  +AT +NSLS    
Sbjct:  1009 CIYERLTGDSNH--CPFANCNVRLTISSLSSKTR---LDDAMPDMQERAT-SNSLSPCSD 1062

Query:  1183 GQEIPTDYSDSKLVEA 1198
              +++P  Y  SK+  A
Sbjct:  1063 -EDLP--YGSSKIKAA 1075
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0004386 "helicase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0009553 "embryo sac development" evidence=IMP
TAIR|locus:2008096 AT1G50410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095360 AT3G20010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089318 AT3G16600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPBC23E6.02 rrp2 "ATP-dependent DNA helicase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000030172 AN5483 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TAIR|locus:2158357 AT5G43530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3306 hltf "helicase-like transcription factor" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2207175 AT1G05120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0272082 DDB_G0272082 "CHR group protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.12LOW CONFIDENCE prediction!
3rd Layer3.6.40.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CHR935
chromatin remodeling complex subunit (800 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1435
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 4e-54
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 4e-36
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 2e-29
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 8e-24
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 1e-21
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 3e-17
smart0049082 smart00490, HELICc, helicase superfamily c-termina 5e-17
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 2e-10
smart0018440 smart00184, RING, Ring finger 7e-08
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 1e-07
cd0016245 cd00162, RING, RING-finger (Really Interesting New 3e-07
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 4e-07
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 9e-07
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 5e-04
pfam0009740 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING 7e-04
pfam1363946 pfam13639, zf-RING_2, Ring finger domain 9e-04
COG5574271 COG5574, PEX10, RING-finger-containing E3 ubiquiti 0.004
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information 
 Score =  191 bits (486), Expect = 4e-54
 Identities = 109/425 (25%), Positives = 162/425 (38%), Gaps = 140/425 (32%)

Query: 672  HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLET 731
            +Q   ++W++  E++ L   GGILAD+ GLGKT+ TIAL+                    
Sbjct: 1    YQLEGVNWLISLESNGL---GGILADEMGLGKTLQTIALLATY----------------- 40

Query: 732  LNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVL 791
              L E  +     G  LV        V P                            S L
Sbjct: 41   --LKEGKD---RRGPTLV--------VCP---------------------------LSTL 60

Query: 792  RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE------LAKFDVVITTYSIVSMEVPKQ 845
              W  E         +L V+VYHG  R +          L  +DVVITTY ++       
Sbjct: 61   HNWLNEFE---KWAPALRVVVYHGDGRERSKLRQSMAKRLDTYDVVITTYEVL------- 110

Query: 846  PLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLA 905
               DK+                                                    L 
Sbjct: 111  -RKDKKLLSL------------------------------------------------LN 121

Query: 906  KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 965
            KV W RVVLDEA  +KN ++++ +A   L+ + R  L+GTPIQN +++L++   FLR  P
Sbjct: 122  KVEWDRVVLDEAHRLKNSKSKLYKALKKLKTRNRLLLTGTPIQNNLEELWALLNFLRPGP 181

Query: 966  FAVYKSFCSMIKVPI-----SKNPV-----KGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 1015
            F  +K F     +PI     +KN       +G  +L  +LK  +LRRTK  +        
Sbjct: 182  FGSFKVFEEWFNIPIANTADNKNKNLEKGKEGINRLHKLLKPFLLRRTKDDVEKS----- 236

Query: 1016 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1075
            LPPK   +   + +DE+R  Y +L    R         G       ++L ++++LR+ C+
Sbjct: 237  LPPKTEHVLYCNLSDEQRKLYKKLLTKRRLALSFAVEGGEKNVGIASLLNLIMQLRKICN 296

Query: 1076 HPLLV 1080
            HP L 
Sbjct: 297  HPYLF 301

This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|214546 smart00184, RING, Ring finger Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain Back     alignment and domain information
>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1435
KOG1002791 consensus Nucleotide excision repair protein RAD16 100.0
KOG4439901 consensus RNA polymerase II transcription terminat 100.0
KOG0385 971 consensus Chromatin remodeling complex WSTF-ISWI, 100.0
KOG0387 923 consensus Transcription-coupled repair protein CSB 100.0
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 100.0
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 100.0
KOG1001674 consensus Helicase-like transcription factor HLTF/ 100.0
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 100.0
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 100.0
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 100.0
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 100.0
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 100.0
KOG0386 1157 consensus Chromatin remodeling complex SWI/SNF, co 100.0
KOG1015 1567 consensus Transcription regulator XNP/ATRX, DEAD-b 100.0
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 100.0
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 100.0
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 100.0
PRK04914 956 ATP-dependent helicase HepA; Validated 100.0
KOG0298 1394 consensus DEAD box-containing helicase-like transc 100.0
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 100.0
KOG0383696 consensus Predicted helicase [General function pre 100.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 100.0
PRK13766 773 Hef nuclease; Provisional 99.97
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.92
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.91
PHA02558501 uvsW UvsW helicase; Provisional 99.91
KOG1123776 consensus RNA polymerase II transcription initiati 99.85
PTZ00110545 helicase; Provisional 99.8
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.79
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.78
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.76
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.76
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.76
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.76
KOG0354 746 consensus DEAD-box like helicase [General function 99.75
PRK04537 572 ATP-dependent RNA helicase RhlB; Provisional 99.74
PTZ00424401 helicase 45; Provisional 99.74
PRK11057 607 ATP-dependent DNA helicase RecQ; Provisional 99.73
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.73
PRK11634 629 ATP-dependent RNA helicase DeaD; Provisional 99.73
TIGR01389 591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.72
PRK11448 1123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.71
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.7
TIGR00580 926 mfd transcription-repair coupling factor (mfd). Al 99.67
PRK10689 1147 transcription-repair coupling factor; Provisional 99.66
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.66
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 99.63
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 99.63
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 99.58
PRK13767 876 ATP-dependent helicase; Provisional 99.55
PRK02362 737 ski2-like helicase; Provisional 99.55
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.5
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.5
PRK01172 674 ski2-like helicase; Provisional 99.49
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.49
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.48
PRK00254 720 ski2-like helicase; Provisional 99.47
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.38
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.37
TIGR03714 762 secA2 accessory Sec system translocase SecA2. Memb 99.36
PRK09200 790 preprotein translocase subunit SecA; Reviewed 99.36
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 99.36
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.34
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.33
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.33
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 99.32
smart00487201 DEXDc DEAD-like helicases superfamily. 99.32
TIGR00963 745 secA preprotein translocase, SecA subunit. The pro 99.31
PRK05580679 primosome assembly protein PriA; Validated 99.29
COG4096 875 HsdR Type I site-specific restriction-modification 99.28
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 99.27
PHA02653 675 RNA helicase NPH-II; Provisional 99.27
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.25
smart0049082 HELICc helicase superfamily c-terminal domain. 99.23
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.23
PRK09401 1176 reverse gyrase; Reviewed 99.23
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.23
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.14
KOG4284 980 consensus DEAD box protein [Transcription] 99.14
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.14
COG1201 814 Lhr Lhr-like helicases [General function predictio 99.11
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.11
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.08
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.08
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.05
COG1205 851 Distinct helicase family with a unique C-terminal 99.05
KOG0343 758 consensus RNA Helicase [RNA processing and modific 99.05
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 99.04
COG0514 590 RecQ Superfamily II DNA helicase [DNA replication, 99.03
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 99.01
PRK12906 796 secA preprotein translocase subunit SecA; Reviewed 98.99
KOG0348 708 consensus ATP-dependent RNA helicase [RNA processi 98.97
PRK14701 1638 reverse gyrase; Provisional 98.97
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 98.96
KOG0339 731 consensus ATP-dependent RNA helicase [RNA processi 98.95
COG1204766 Superfamily II helicase [General function predicti 98.95
PRK09694 878 helicase Cas3; Provisional 98.92
COG1197 1139 Mfd Transcription-repair coupling factor (superfam 98.9
PRK12904 830 preprotein translocase subunit SecA; Reviewed 98.89
KOG0338 691 consensus ATP-dependent RNA helicase [RNA processi 98.84
PRK13107 908 preprotein translocase subunit SecA; Reviewed 98.83
COG4889 1518 Predicted helicase [General function prediction on 98.81
COG1202 830 Superfamily II helicase, archaea-specific [General 98.8
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 98.78
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 98.71
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 98.68
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 98.61
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 98.6
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 98.59
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 98.57
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 98.56
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 98.52
KOG0334 997 consensus RNA helicase [RNA processing and modific 98.46
COG1203 733 CRISPR-associated helicase Cas3 [Defense mechanism 98.42
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 98.41
PRK12326 764 preprotein translocase subunit SecA; Reviewed 98.38
KOG1513 1300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 98.37
PF11496297 HDA2-3: Class II histone deacetylase complex subun 98.36
PRK05298652 excinuclease ABC subunit B; Provisional 98.3
COG0556663 UvrB Helicase subunit of the DNA excision repair c 98.28
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 98.23
PF13871 278 Helicase_C_4: Helicase_C-like 98.21
COG4098441 comFA Superfamily II DNA/RNA helicase required for 98.18
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 98.15
KOG0345 567 consensus ATP-dependent RNA helicase [RNA processi 98.13
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 98.09
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 98.01
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 98.0
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 97.98
KOG0327397 consensus Translation initiation factor 4F, helica 97.89
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 97.84
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 97.7
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 97.6
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 97.54
COG1198730 PriA Primosomal protein N' (replication factor Y) 97.5
KOG0347 731 consensus RNA helicase [RNA processing and modific 97.46
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 97.38
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 97.22
KOG0351 941 consensus ATP-dependent DNA helicase [Replication, 97.15
KOG0953 700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 97.12
KOG0949 1330 consensus Predicted helicase, DEAD-box superfamily 97.08
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 97.07
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 97.03
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 97.03
KOG0346 569 consensus RNA helicase [RNA processing and modific 97.02
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 96.99
PRK15483 986 type III restriction-modification system StyLTI en 96.97
CHL00122 870 secA preprotein translocase subunit SecA; Validate 96.87
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 96.87
smart0050463 Ubox Modified RING finger domain. Modified RING fi 96.72
COG0610 962 Type I site-specific restriction-modification syst 96.69
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 96.65
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 96.64
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 96.63
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 96.58
KOG0337 529 consensus ATP-dependent RNA helicase [RNA processi 96.27
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 96.22
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 96.07
KOG0352 641 consensus ATP-dependent DNA helicase [Replication, 95.98
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 95.9
PHA02929238 N1R/p28-like protein; Provisional 95.59
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 95.55
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 95.48
TIGR00599397 rad18 DNA repair protein rad18. This family is bas 95.4
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 95.39
KOG2164513 consensus Predicted E3 ubiquitin ligase [Posttrans 95.35
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 95.24
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 95.02
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 95.01
smart00489289 DEXDc3 DEAD-like helicases superfamily. 94.48
smart00488289 DEXDc2 DEAD-like helicases superfamily. 94.48
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 94.18
cd0016245 RING RING-finger (Really Interesting New Gene) dom 94.18
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 94.11
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 93.87
PF1463444 zf-RING_5: zinc-RING finger domain 93.53
PHA02926242 zinc finger-like protein; Provisional 93.41
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 93.34
PRK10536262 hypothetical protein; Provisional 93.34
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 93.09
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 92.82
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 92.66
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 92.6
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 92.49
TIGR00376637 DNA helicase, putative. The gene product may repre 92.19
COG5432391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 91.86
COG0653 822 SecA Preprotein translocase subunit SecA (ATPase, 91.51
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 91.39
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 91.18
COG3587 985 Restriction endonuclease [Defense mechanisms] 91.15
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 90.69
KOG0824324 consensus Predicted E3 ubiquitin ligase [Posttrans 89.96
KOG1132 945 consensus Helicase of the DEAD superfamily [Replic 89.61
KOG0353 695 consensus ATP-dependent DNA helicase [General func 89.04
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 88.51
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 88.3
KOG1785563 consensus Tyrosine kinase negative regulator CBL [ 88.28
smart00492141 HELICc3 helicase superfamily c-terminal domain. 88.26
KOG0311381 consensus Predicted E3 ubiquitin ligase [Posttrans 87.81
KOG1803649 consensus DNA helicase [Replication, recombination 87.55
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 87.4
PRK14873665 primosome assembly protein PriA; Provisional 87.38
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 86.84
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 86.68
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 86.18
COG5222427 Uncharacterized conserved protein, contains RING Z 86.1
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 86.01
PRK10875615 recD exonuclease V subunit alpha; Provisional 85.83
COG5220314 TFB3 Cdk activating kinase (CAK)/RNA polymerase II 85.6
KOG4150 1034 consensus Predicted ATP-dependent RNA helicase [RN 85.36
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 85.07
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 84.48
KOG0347731 consensus RNA helicase [RNA processing and modific 84.25
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 84.15
COG5152259 Uncharacterized conserved protein, contains RING a 83.53
KOG0353695 consensus ATP-dependent DNA helicase [General func 82.93
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 82.8
KOG2177386 consensus Predicted E3 ubiquitin ligase [Posttrans 82.65
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 82.52
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 82.36
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 80.73
smart00491142 HELICc2 helicase superfamily c-terminal domain. 80.56
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-102  Score=885.29  Aligned_cols=576  Identities=41%  Similarity=0.702  Sum_probs=477.4

Q ss_pred             CCCCCCCccCCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhcccccc
Q 000537          658 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE  737 (1435)
Q Consensus       658 ~~~P~~~l~~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~  737 (1435)
                      +.+|.+ +.++|+|||+++|+|+..+|.++.  .|||||||||+|||+|+|||++..-                      
T Consensus       175 aeqP~d-lii~LL~fQkE~l~Wl~~QE~Ss~--~GGiLADEMGMGKTIQtIaLllae~----------------------  229 (791)
T KOG1002|consen  175 AEQPDD-LIIPLLPFQKEGLAWLTSQEESSV--AGGILADEMGMGKTIQTIALLLAEV----------------------  229 (791)
T ss_pred             ccCccc-ceecchhhhHHHHHHHHHhhhhhh--ccceehhhhccchHHHHHHHHHhcc----------------------
Confidence            456666 578999999999999999999875  8999999999999999999998621                      


Q ss_pred             ccccccccccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 000537          738 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS  817 (1435)
Q Consensus       738 ~~~~~~~~~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~  817 (1435)
                                                              ..+|||||||.-.+.||.+||.+|..  +.+++++|||..
T Consensus       230 ----------------------------------------~ra~tLVvaP~VAlmQW~nEI~~~T~--gslkv~~YhG~~  267 (791)
T KOG1002|consen  230 ----------------------------------------DRAPTLVVAPTVALMQWKNEIERHTS--GSLKVYIYHGAK  267 (791)
T ss_pred             ----------------------------------------ccCCeeEEccHHHHHHHHHHHHHhcc--CceEEEEEeccc
Confidence                                                    12469999999999999999999875  789999999999


Q ss_pred             CCCCcccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCccc
Q 000537          818 RTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLL  897 (1435)
Q Consensus       818 r~k~~~~L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~  897 (1435)
                      |.+..++|..||||+|||.++.+++.++.               +++                 +||..          .
T Consensus       268 R~~nikel~~YDvVLTty~vvEs~yRk~~---------------~Gf-----------------rrKng----------v  305 (791)
T KOG1002|consen  268 RDKNIKELMNYDVVLTTYAVVESVYRKQD---------------YGF-----------------RRKNG----------V  305 (791)
T ss_pred             ccCCHHHhhcCcEEEEecHHHHHHHHhcc---------------ccc-----------------cccCC----------c
Confidence            99999999999999999999988765431               111                 11111          1


Q ss_pred             ccccCcccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCChhhhhhhccccccccccchH-------
Q 000537          898 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK-------  970 (1435)
Q Consensus       898 ~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf~~~~-------  970 (1435)
                      +.-+++|+++.|.||||||||.||++.+.+++|++.|++.+||||||||+||++.|||++++||+..||.-+-       
T Consensus       306 ~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~  385 (791)
T KOG1002|consen  306 DKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCA  385 (791)
T ss_pred             ccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhcccc
Confidence            2235789999999999999999999999999999999999999999999999999999999999999984321       


Q ss_pred             ------------------------HHHhhhcccCCCCch-----hhHHHHHHHHhHhhheeccccccCCCCccCCCCcEE
Q 000537          971 ------------------------SFCSMIKVPISKNPV-----KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 1021 (1435)
Q Consensus       971 ------------------------~F~~~f~~pi~~~~~-----~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e 1021 (1435)
                                              .|...+..||.+...     .+....+.+|+.+|+||||-.-.+   .+-|||+.+
T Consensus       386 ~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAd---DLgLPPRiv  462 (791)
T KOG1002|consen  386 SLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERAD---DLGLPPRIV  462 (791)
T ss_pred             ccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhccccc---ccCCCccce
Confidence                                    233333456655432     335678999999999999865444   267999999


Q ss_pred             EEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhccH
Q 000537         1022 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQ 1101 (1435)
Q Consensus      1022 ~vv~v~lS~eEr~~Y~~L~~~s~~~~k~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~~~~~~s~e~a~~l~~ 1101 (1435)
                      .+.+--|+.+|.++|+.|...++..|..|.++|.+..||+||+.++.||||+++||.|+....           ...++.
T Consensus       463 ~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~-----------~~n~~~  531 (791)
T KOG1002|consen  463 TVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSA-----------NANLPD  531 (791)
T ss_pred             eeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehh-----------hcCCCc
Confidence            999999999999999999999999999999999999999999999999999999999875311           111111


Q ss_pred             HHHHHHHHHhhhhcccccCCCCCCccchhcccCcccchhhhhhhccc----CCCCCCCccccccccccchhhhhhhcccc
Q 000537         1102 ERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTA----DDNQCPTRNCKIRLSLSSVFSKATLNNSL 1177 (1435)
Q Consensus      1102 e~~~~ll~~le~~~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~----~~~~Cp~~~C~~~l~~~~vfs~~~l~~~~ 1177 (1435)
                      +         .....+|.+|.++.++++.+.|.|.||+-|+.++...    ..-.||.  |...+..+---.. .....+
T Consensus       532 e---------nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~--C~i~LsiDlse~a-lek~~l  599 (791)
T KOG1002|consen  532 E---------NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPV--CHIGLSIDLSEPA-LEKTDL  599 (791)
T ss_pred             c---------ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcc--ccccccccccchh-hhhcch
Confidence            1         1235789999999999999999999999999887643    3346774  8877765511100 000000


Q ss_pred             ccCCCCCCCCCCCCCcccccCCccCCccccchHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcc
Q 000537         1178 SQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTL 1257 (1435)
Q Consensus      1178 ~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~SsKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L 1257 (1435)
                      .. ....          -.-.......+..|.||+++.+.|.-+.+.                                 
T Consensus       600 ~~-Fk~s----------SIlnRinm~~~qsSTKIEAL~EEl~~l~~r---------------------------------  635 (791)
T KOG1002|consen  600 KG-FKAS----------SILNRINMDDWQSSTKIEALVEELYFLRER---------------------------------  635 (791)
T ss_pred             hh-hhhH----------HHhhhcchhhhcchhHHHHHHHHHHHHHHc---------------------------------
Confidence            00 0000          000012234566799999999988875321                                 


Q ss_pred             cccchhhHHHHhhccccccccCCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEe
Q 000537         1258 DNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIM 1337 (1435)
Q Consensus      1258 ~~l~~~~~~~~~~~~~~~i~~~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~ 1337 (1435)
                                          ....|.|||||||+|||+|+..|.+.|+..+.+.|+|++++|.++|+.|.++++++|+|+
T Consensus       636 --------------------d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLv  695 (791)
T KOG1002|consen  636 --------------------DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLV  695 (791)
T ss_pred             --------------------ccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEE
Confidence                                145799999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccccccCccccCEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCc
Q 000537         1338 SLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDET 1417 (1435)
Q Consensus      1338 StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~ 1417 (1435)
                      |++|||+.|||+.|++|++|||||||++|.||.+|+|||||.|||.|+||++++|||++|+++|++|..|+.+.+|+++.
T Consensus       696 SLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~  775 (791)
T KOG1002|consen  696 SLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEE  775 (791)
T ss_pred             EeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998874


Q ss_pred             CccccCCCHHHHHHhhc
Q 000537         1418 GGQQTRLTVDDLNYLFM 1434 (1435)
Q Consensus      1418 ~~~~~~lt~~DL~~LF~ 1434 (1435)
                        .+.+|+++|+++||.
T Consensus       776 --Ai~kLt~eDmqfLF~  790 (791)
T KOG1002|consen  776 --AISKLTEEDMQFLFN  790 (791)
T ss_pred             --HHHhcCHHHHHHHhc
Confidence              467999999999995

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1435
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 3e-20
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 1e-17
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 9e-20
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 5e-17
3mwy_W800 Crystal Structure Of The Chromodomain-atpase Portio 2e-19
1z3i_X644 Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA 8e-18
1z5z_A271 Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal 9e-18
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure 
Iteration: 1

 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 95/179 (53%), Gaps = 7/179 (3%)
Query: 904  LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 963
            L +V W  +V+DEAQ+IKN +T++ +A   L++K R  L+GTPI+N +DDL+S   FL  
Sbjct: 145  LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNP 204
Query: 964  DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 1023
                 Y  F S    PI K      ++L+A++   +LRRTK    D   I +LP K+   
Sbjct: 205  GLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTK---YDKAIINDLPDKIETN 261
Query: 1024 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 1082
               + T E+   Y        + F    +   +K+  + IL  LL+L+Q  DHP L+KG
Sbjct: 262  VYCNLTPEQAAMYKA---EVENLFNNIDSVTGIKRKGM-ILSTLLKLKQIVDHPALLKG 316
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 Back     alignment and structure
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1435
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 6e-61
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 3e-14
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 6e-59
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 7e-42
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 2e-10
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 3e-09
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 8e-36
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 1e-19
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 4e-07
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 1e-06
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 4e-33
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 2e-11
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 5e-06
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 7e-30
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 1e-17
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 1e-08
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 8e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 1e-09
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 7e-09
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 1e-08
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 2e-08
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 3e-08
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 6e-08
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 6e-08
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 2e-07
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 2e-07
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 5e-07
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 1e-06
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 2e-06
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 4e-06
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 5e-06
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 6e-06
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 6e-06
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 7e-06
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 1e-05
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 2e-05
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 2e-05
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 2e-05
4epo_C149 E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 2e-05
1z6u_A150 NP95-like ring finger protein isoform B; structura 6e-05
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 7e-05
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 2e-04
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 2e-04
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 2e-04
2ecw_A85 Tripartite motif-containing protein 30; metal bind 3e-04
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
 Score =  208 bits (533), Expect = 6e-61
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)

Query: 1273 IDSIKLGGEKAIVFSQWTKMLDLLEASL-KDSSIQYRRLDGTMSVFARDKAVKDFNTLPE 1331
            I+     G+K  +F+Q+  M  ++   + K+ + +   L G +S   RD  +  F   P 
Sbjct: 105  IEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPS 164

Query: 1332 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1391
            V  +++S+KA   G+N+ +A  V+  D WWNP  EDQA DR +RIGQTR V V +L    
Sbjct: 165  VKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224

Query: 1392 TVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1433
            T+E++I  L   KR +        ++    T L+ ++L  + 
Sbjct: 225  TLEEKIDQLLAFKRSLFKDIISSGDSWI--TELSTEELRKVI 264
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116 Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165 Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149 Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133 Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1435
d1z5za1244 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h 1e-22
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 2e-22
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 3e-07
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 1e-19
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 2e-08
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 1e-13
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 2e-12
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 6e-08
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 4e-11
d1rmda286 g.44.1.1 (A:1-86) V(D)J recombination activating p 5e-11
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 5e-08
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 6e-08
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 7e-08
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 5e-06
d1t1ha_78 g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre 4e-05
d1gkub2248 c.37.1.16 (B:251-498) Helicase-like "domain" of re 4e-05
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 6e-04
d2c2la280 g.44.1.2 (A:225-304) STIP1 homology and U box-cont 6e-04
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 7e-04
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 96.7 bits (239), Expect = 1e-22
 Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 3/154 (1%)

Query: 1281 EKAIVFSQWTKMLDLLEASLKD-SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1339
            +K  +F+Q+  M  ++   ++   + +   L G +S   RD  +  F   P V  +++S+
Sbjct: 86   DKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 145

Query: 1340 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1399
            KA   G+N+ +A  V+  D WWNP  EDQA DR +RIGQTR V V +L    T+E++I  
Sbjct: 146  KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQ 205

Query: 1400 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1433
            L   KR +        ++    T L+ ++L  + 
Sbjct: 206  LLAFKRSLFKDIISSGDS--WITELSTEELRKVI 237
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1435
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.89
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.83
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.82
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.78
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.78
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.76
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.73
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.71
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.67
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.65
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.62
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.59
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.46
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.45
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.42
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.36
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.18
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.17
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.14
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.03
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.03
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.0
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 98.9
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 98.79
d1a1va2 299 HCV helicase domain {Human hepatitis C virus (HCV) 98.74
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 98.73
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 98.7
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 98.63
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 98.61
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 98.61
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 98.59
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 98.58
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 98.58
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 98.5
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 98.42
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 98.3
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 98.29
d1yksa2 299 YFV helicase domain {Yellow fever virus [TaxId: 11 97.89
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 97.84
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 97.83
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 97.61
d2c2la280 STIP1 homology and U box-containing protein 1, STU 97.44
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 97.39
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 97.25
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 97.23
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 97.19
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 96.99
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 96.54
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 96.53
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 96.42
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 96.37
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 95.73
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 95.55
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 95.4
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 95.39
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 95.13
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 94.14
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 93.85
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 93.15
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 90.06
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 85.67
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=0  Score=357.17  Aligned_cols=264  Identities=25%  Similarity=0.381  Sum_probs=207.9

Q ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             79993799998059999999999999999999999997064510199999999999997158100024574146664799
Q 000537         1015 NLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVE 1094 (1435)
Q Consensus      1015 ~LPpk~e~vv~v~lS~eEr~lY~~L~~~sr~~~~~~~~~g~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~s~e 1094 (1435)
                      .||||++.+++|+||+.|+++|+.+....+.     ...........++|..+++|||+|+||.|+.......       
T Consensus         8 ~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~-----~~~~~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~-------   75 (346)
T d1z3ix1           8 YLPVKIEQVVCCNLTPLQKELYKLFLKQAKP-----VESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTG-------   75 (346)
T ss_dssp             TSCCEEEEEEEECCCHHHHHHHHHHHHHHCG-----GGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHT-------
T ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCC-------
T ss_conf             0889879999969799999999999998999-----9865448716899999999999957998861111022-------


Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf             98406089999999986530112467899986211013585111234533101489988885322334422102353102
Q 000537         1095 MAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLN 1174 (1435)
Q Consensus      1095 ~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~vit~CgHvfC~~Ci~e~l~~~~~~CP~~~C~~~l~~~~v~s~~~l~ 1174 (1435)
                        ..                         .                        .+.                       
T Consensus        76 --~~-------------------------~------------------------~~~-----------------------   81 (346)
T d1z3ix1          76 --EE-------------------------G------------------------FDG-----------------------   81 (346)
T ss_dssp             --CT-------------------------T------------------------CTT-----------------------
T ss_pred             --CC-------------------------C------------------------CCC-----------------------
T ss_conf             --11-------------------------2------------------------320-----------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33235899999888888742235886678654636899999999960278998655543223447886689999988889
Q 000537         1175 NSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGG 1254 (1435)
Q Consensus      1175 ~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~SsKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 1254 (1435)
                        ..     ...+..        ..........|+|+..+.++|..+.                                
T Consensus        82 --~~-----~~~~~~--------~~~~~~~~~~S~Kl~~L~~ll~~~~--------------------------------  114 (346)
T d1z3ix1          82 --AL-----DLFPQN--------YSTKAVEPQLSGKMLVLDYILAMTR--------------------------------  114 (346)
T ss_dssp             --GG-----GTSCSS--------CCSSSCCGGGSHHHHHHHHHHHHHH--------------------------------
T ss_pred             --HH-----HHCCCC--------CCCCCCCCCCCHHHHHHHHHHHHHH--------------------------------
T ss_conf             --03-----312334--------1000014001789999999999988--------------------------------


Q ss_pred             CCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCC-CCC
Q ss_conf             8643420256898832022110269973999915588999999999816993882389989999999999871499-953
Q 000537         1255 DTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-EVS 1333 (1435)
Q Consensus      1255 ~~L~~l~~~~~~~~~~~~~~~i~~~~eKVIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~-~v~ 1333 (1435)
                                            ..+++|+||||+|+.++++|+.+|...|+.|.+++|+++..+|++++++|+++. ...
T Consensus       115 ----------------------~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~  172 (346)
T d1z3ix1         115 ----------------------TTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEF  172 (346)
T ss_dssp             ----------------------HHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCC
T ss_pred             ----------------------HHCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
T ss_conf             ----------------------7518951688630145679999976300241101110027889999986510234330


Q ss_pred             EEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             89961342223568555698999649999492889989553049989499999995999999999999999999998818
Q 000537         1334 VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1413 (1435)
Q Consensus      1334 VLLlSlkAGg~GLNLt~An~VIilDp~WNPa~e~QAigRvhRIGQkr~V~VyrLi~kdTIEErIl~lq~kK~~l~~s~lg 1413 (1435)
                      |||+++++||+||||+.|++||+||++|||+.+.||+||+||+||+++|+||||++++||||+|+++|..|+.+++.+++
T Consensus       173 vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K~~l~~~v~~  252 (346)
T d1z3ix1         173 IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVD  252 (346)
T ss_dssp             EEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCS
T ss_pred             EEEECCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             25403314443356564307999457886155867633340348998438999873898999999999999999998758


Q ss_pred             CCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             9976763447799999974329
Q 000537         1414 EDETGGQQTRLTVDDLNYLFMV 1435 (1435)
Q Consensus      1414 ~d~~~~~~~~lt~~DL~~LF~~ 1435 (1435)
                      ++..  ....++.+||+.||.+
T Consensus       253 ~~~~--~~~~~~~~~l~~lf~~  272 (346)
T d1z3ix1         253 EEQD--VERHFSLGELRELFSL  272 (346)
T ss_dssp             CSSS--CCCSSCHHHHHHHTCC
T ss_pred             CCHH--HHHCCCHHHHHHHHCC
T ss_conf             8655--5402899999999647
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure