Citrus Sinensis ID: 000548

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430-

MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTGTTRSQILSNLNDLALGTSFL

ccccEEEccccccEEEEEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEcEEEEEEEEEcccccccccccccccccEEEcccccccEEEEEEEEEEEEEEEEEEEEcccccccccccEEEEEEccccEEEEEEEcccccEEEEEEEEEcccccccccccccccccccEEEEcccccEEEEEEEccEEEEEEccccccccccccccccccccccccccccEEEEccccccccEEEEEEEccccccEEEEEEEccccccccccccccEEEEEEEEEEcccccccEEEEcccccccccEEEEEcccccEEEEEEccEEEEEEcccccEEEccccccccccccccccEEEEEEEEEEEEEEEEccEEEEEEccccEEEEEEEEcccEEEEEEEEEEccccccccEEEEcccEEEEEEEEccEEEEEEEEcccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccEEEEEEEEcccccccccEEEcccccccccccccccccccccEEEEcccccEEEEEEEccccccccccccccccccccccEEEEEEEccEEEEEEcccEEEEEEcccccccccEEEEEEEccccEEEEEEcccEEEEEccccEEEEEccccccccccccccccEEEEEEcccEEEEEEEcccEEEEEccccccEEEEccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEccccEEEEEEEcccccccEEEEcccccccccccccccccccccccccccccccccEEEEEEEEcccccccccEEEEEEEccEEEEEEEEEcccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEcccccEEEEEEcccEEEEEccccccEEEEEEEcccccccEEEEEEEccEEEEEEccccccccccccEEEEEccccccEEEEEccccEEEEEEEcccccccHHHHHHcccccccccccccccccccccccccccEEEEEEEcccccccccEEEEEEEccccccEEEEEEEEEcccccccccEEEEEEEEEEccccccccccEEEEEEEEcccccccEEEEEEEEEEcccccEEccccccEEEEEccEEEEEEcccccccEEEEEccccEEEEEEEEEccEEEEEEccccEEEEEEEccccEEEEEEEccccccccEEEEEEcccEEEEEEEcccccEEEEEEcccccccccccccccEEEEEccccEEEEEEEEEEccccccccccccccccccEEEEEEEccccEEEEEEccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccc

ccHHHHHHccccccHHHHHEEEEcccHHcccccccccccccccccccccccccccccEEEEEccEEEEEEEEEcccccccEEcccccccccccccccccEEEEEEEEEEEEEEEEEEEEEEccccccccccEEEEEEcccEEEEEEEcccccccEEEEEEEccccccccccccccccccccEEEEcccccEEEEEEcccEEEEEEEccccHHHcccccccccccccccccccEEEEEcHHccccccEEEHHcccccccEEEEEEcccccccccccccccEEEEEEEEEEcccccccEEEEEccccccHcEEEEccccccEEEEEEEcEEEEEcccccccEEEccccccccccccccccccEEEEEccEEEEccccEEEEEEccccEEEEEEEEcccEEEEEEEEEccccccccEEEEEcccEEEEEEcccccEEEEEEcccccccccccHccccccccccccHHcccccccccccccccccccccHccccHcccccccccEEEEEEcccccccccccEEEcccccHcccccccccccccEEEEccccccEEEEEEcccccccccccccccccccccEEEEEEEcccEEEEEEcccEEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEcccccEEEEcccccccccccccccccEEEEEEcccEEEEEEEccEEEEEEEcccccEEEEcccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEccccEEEEEEccccccccEEEcccccccccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEEEccccEEEEEEEEcccccccccccccccEEEEEcccccEccccccccccccccccccccccccccccEEEEEEccccccEEEEEEccccEEEEEEccccccccccccccEEEEcccccccccccEEEEEcccEEEEEEccccccccccccEEEEEccccccEEEEEccccEEEEEEcccccccccHHHHHccccHcccccccHHHccHHccccccccccEEEEEccccccccEEEEEEEEcccccEEEEEEEEEEEccccccccEEEEEEEEEccccccccccEEEEEEEEEEccccccccEEEEEccccccEEEEEccccEEEEEEccEEEEEEccccccEEEEEEccccEEEEEEEEcccEEEEEEcccEEEEEEEcccccEEEEEEccccccEEEEEEEEcccccEEEEEEcccccEEEEEEcccccccccccEEEEEEEEEccccccEEEEEcccccccccccccccccccccEEEEEEEccccEEEEEcccHHHHHHHHHHHHHHHHcccccccccHHHHHccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHccc

msfaaykmmhwptgiancgsgfithsradyvpqipliqteeldselpskrgigpvpnlVVTAANVIEIYVVRVQeegskesknsgeTKRRVLMDGISAASLELVCHYRLHGNVESLAILSqggadnsrrrDSIILAFEDAKisvlefddsihglritsmhcfespewlhlkrgresfargplvkvdpqgrcggvLVYGLQMIILKAsqggsglvgdedtfgsgggfsariESSHvinlrdldmkHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSIsttlkqhpliwsamnlphdaykllavpspiggvLVVGANTIHYHSQSASCALALNNYAVsldssqelprssfsVELDAAHATWLQNDVALLSTKTGDLVLLTVVYdgrvvqrldlsktnpsvltsdittIGNSLFFLGSRLGDSLLVQFtcgsgtsmlssglkeefgdieadapstkrlrrSSSDALQdmvngeelslygsasnntesAQKTFSFAVRDSlvnigplkdfsyglrinadasatgiskqsnyelvelpgckgiwtvyhkssrghnadssrmaayddEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGArildgsymtqdlsfgpsnsesgsgsenstVLSVSIAdpyvllgmsdgsirllvgdpstctvsvqtpaaiesskkpvssctlyhdkgpepwlrktstdawlstgvgeaidgadggpldqgdiysVVCYesgaleifdvpnfncvftvdkfvsgrtHIVDTYMREALKDSeteinssseegtgqgrkeNIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYlfegpentsksddpvstsrslsvsnvsasrlrnlrfsrtpldaytreetphgapcqritifknisghqgfflsgsrpcwcmVFRErlrvhpqlcdgsIVAFTVLHNVNCNHGFIYVTSQGILkicqlpsgstydnywpvqkiplkatphqitYFAEKNLYPLIVSVPVLKPLNQVLSLLIDqevghqidnhnlssvdlhrtytvEEYEVrilepdraggpwqtratipmqssenALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFstgrnadnpqnLVTEVYSKELKGAISALASLQGHLliasgpkiilhkwtgtelngiafydapplyvVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKdfgsldcfateflidgstlslvvsdeqKNIQIFyyapkmseswkgqkllsraefhvgAHVTKFLRLQMLAtssdrtgaapgsdktNRFALLFGtldgsigciapldeLTFRRLQSLQKKLVdsvphvaglnprsfrqfhsngkahrpgpdsivdcellshyemlplEEQLEIAHQTGTTRSQILSNlndlalgtsfl

MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVrvqeegskesknsgetkrrVLMDGISAASLELVCHYRLHGNVESLAIlsqggadnsrRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFArgplvkvdpqgRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGrvvqrldlsktnpsvltsdITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKeefgdieadapstkrlrrsssDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADAsatgiskqsnyELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTiaagnlfgrrrVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQtpaaiesskkpvssCTLYHDkgpepwlrkTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMRealkdseteinssseegtgqgrkenIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPEntsksddpvstsrslsvsnvsasrlrnlrfsrtpldaytreetphgapCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGhqidnhnlssvdlhrtYTVEEYEVRilepdraggpwqtratipmqssenaLTVRVVTLFNtttkenetlLAIGTAYVQGEDVAARGRVLLFstgrnadnpqnLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSsdrtgaapgsdKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTGTTRSQIlsnlndlalgtsfl

MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQeegskesknsgeTKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPsnsesgsgsensTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPvstsrslsvsnvsasrlrnLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTGTTRSQILSNLNDLALGTSFL

***AAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEE********RGIGPVPNLVVTAANVIEIYVVRV*****************VLMDGISAASLELVCHYRLHGNVESLAILSQGGA****RRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSL**********FSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSG*********************************************************TFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHK***********MAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMT********************VLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQ**************CTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMR****************************MKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFE************************************************GAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPM***ENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLA***************NRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLVDSVPHVAGL*********************IVDCELLSHYEMLPLEEQLEIAH***********************

**FAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEEL********GIGPVPNLVVTAANVIEIYVVRV********************DGISAASLELVCHYRLHGNVESLAILSQG*A**SRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEW*********FARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGS******************IESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSG**********************KRLRRSSSDALQDMVNGEELS**************TFSFAVRDSLVNIGPLKDFSYGLRINA************YELVELPGCKGIWTVY****************YDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAW*****************DQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREAL************************SMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFE***************************************************CQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKIPLKATPHQITYFAEKNLYPLIVSVPVLKPLN******************NLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA************LSRAEFHVGAHVTKFLRLQML****************NRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTGTTRSQILSNLNDLALGTSFL

MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQE************KRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADA************ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLS****************VLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPA*************LYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALK******************KENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGP*********************SASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATS*********SDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTGTTRSQILSNLNDLALGTSFL

*SFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSG*V***********FSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCG*********************************ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHKSS**************DEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLR**STDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEI********GQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLR******************HGAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLL*D**VGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATS***********KTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTGTTRSQILSNLNDLALGTSFL

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1431	2.2.26 [Sep-21-2011]
Q9FGR0		1442	Cleavage and polyadenylat	yes	no	0.987	0.979	0.747	0.0
Q7XWP1		1441	Probable cleavage and pol	yes	no	0.978	0.971	0.640	0.0
Q9V726		1455	Cleavage and polyadenylat	yes	no	0.905	0.890	0.282	1e-145
Q10569		1444	Cleavage and polyadenylat	yes	no	0.444	0.440	0.317	1e-91
Q9EPU4		1441	Cleavage and polyadenylat	yes	no	0.444	0.441	0.319	2e-91
Q10570		1443	Cleavage and polyadenylat	yes	no	0.443	0.439	0.313	4e-90
Q7SEY2		1456	Protein cft-1 OS=Neurospo	N/A	no	0.858	0.844	0.243	4e-78
O74733		1441	Protein cft1 OS=Schizosac	yes	no	0.865	0.859	0.232	3e-77
Q2TZ19		1393	Protein cft1 OS=Aspergill	yes	no	0.833	0.856	0.240	8e-77
Q5BDG7		1339	Protein cft1 OS=Emericell	yes	no	0.853	0.912	0.241	8e-73

>sp\|Q9FGR0\|CPSF1_ARATH Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2	Back alignment and function desciption

 Score = 2249 bits (5829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1092/1460 (74%), Positives = 1254/1460 (85%), Gaps = 47/1460 (3%)

Query: 1    MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQT-EELDSELPS-KRGIGPVPNL 58
            MSFAAYKMMHWPTG+ NC SG+ITHS +D   QIP++   +++++E P+ KRGIGP+PN+
Sbjct: 1    MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVHDDIEAEWPNPKRGIGPLPNV 60

Query: 59   VVTAANVIEIYVVRVQEEG-SKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLA 117
            V+TAAN++E+Y+VR QEEG ++E +N    KR  +MDG+   SLELVCHYRLHGNVES+A
Sbjct: 61   VITAANILEVYIVRAQEEGNTQELRNPKLAKRGGVMDGVYGVSLELVCHYRLHGNVESIA 120

Query: 118  ILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESF 177
            +L  GG ++S+ RDSIIL F DAKISVLEFDDSIH LR+TSMHCFE P+WLHLKRGRESF
Sbjct: 121  VLPMGGGNSSKGRDSIILTFRDAKISVLEFDDSIHSLRMTSMHCFEGPDWLHLKRGRESF 180

Query: 178  ARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVIN 237
             RGPLVKVDPQGRCGGVLVYGLQMIILK SQ GSGLVGD+D F SGG  SAR+ESS++IN
Sbjct: 181  PRGPLVKVDPQGRCGGVLVYGLQMIILKTSQVGSGLVGDDDAFSSGGTVSARVESSYIIN 240

Query: 238  LRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPL 297
            LRDL+MKHVKDF+F+HGYIEPV+VIL E E TWAGRVSWKHHTC++SALSI++TLKQHP+
Sbjct: 241  LRDLEMKHVKDFVFLHGYIEPVIVILQEEEHTWAGRVSWKHHTCVLSALSINSTLKQHPV 300

Query: 298  IWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPR 357
            IWSA+NLPHDAYKLLAVPSPIGGVLV+ ANTIHYHSQSASCALALNNYA S DSSQELP 
Sbjct: 301  IWSAINLPHDAYKLLAVPSPIGGVLVLCANTIHYHSQSASCALALNNYASSADSSQELPA 360

Query: 358  SSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITT 417
            S+FSVELDAAH TW+ NDVALLSTK+G+L+LLT++YDGR VQRLDLSK+  SVL SDIT+
Sbjct: 361  SNFSVELDAAHGTWISNDVALLSTKSGELLLLTLIYDGRAVQRLDLSKSKASVLASDITS 420

Query: 418  IGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQD 477
            +GNSLFFLGSRLGDSLLVQF+C SG +    GL++E  DIE +    KRLR +S D  QD
Sbjct: 421  VGNSLFFLGSRLGDSLLVQFSCRSGPAASLPGLRDEDEDIEGEGHQAKRLRMTS-DTFQD 479

Query: 478  MVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQS 537
             +  EELSL+GS  NN++SAQK+FSFAVRDSLVN+GP+KDF+YGLRINADA+ATG+SKQS
Sbjct: 480  TIGNEELSLFGSTPNNSDSAQKSFSFAVRDSLVNVGPVKDFAYGLRINADANATGVSKQS 539

Query: 538  NYELV--------------------------ELPGCKGIWTVYHKSSRGHNADSSRMAAY 571
            NYELV                          ELPGCKGIWTVYHKSSRGHNADSS+MAA 
Sbjct: 540  NYELVCCSGHGKNGALCVLRQSIRPEMITEVELPGCKGIWTVYHKSSRGHNADSSKMAAD 599

Query: 572  DDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGA 631
            +DEYHAYLIISLEARTMVLETADLLTEVTESVDY+VQGRTIAAGNLFGRRRVIQVFE GA
Sbjct: 600  EDEYHAYLIISLEARTMVLETADLLTEVTESVDYYVQGRTIAAGNLFGRRRVIQVFEHGA 659

Query: 632  RILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCT 691
            RILDGS+M Q+LSFG SNSES SGSE+STV SVSIADPYVLL M+D SIRLLVGDPSTCT
Sbjct: 660  RILDGSFMNQELSFGASNSESNSGSESSTVSSVSIADPYVLLRMTDDSIRLLVGDPSTCT 719

Query: 692  VSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGD 751
            VS+ +P+ +E SK+ +S+CTLYHDKGPEPWLRK STDAWLS+GVGEA+D  DGGP DQGD
Sbjct: 720  VSISSPSVLEGSKRKISACTLYHDKGPEPWLRKASTDAWLSSGVGEAVDSVDGGPQDQGD 779

Query: 752  IYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGT 811
            IY VVCYESGALEIFDVP+FNCVF+VDKF SGR H+ D  + E     E E+N +SE+ T
Sbjct: 780  IYCVVCYESGALEIFDVPSFNCVFSVDKFASGRRHLSDMPIHEL----EYELNKNSEDNT 835

Query: 812  GQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPV 871
                 + I + +VVELAMQRWS HH+RPFLFA+L DGTILCY AYLF+G ++T K+++ +
Sbjct: 836  S---SKEIKNTRVVELAMQRWSGHHTRPFLFAVLADGTILCYHAYLFDGVDST-KAENSL 891

Query: 872  STSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGS 931
            S+    ++++  +S+LRNL+F R PLD  TRE T  G   QRIT+FKNISGHQGFFLSGS
Sbjct: 892  SSENPAALNSSGSSKLRNLKFLRIPLDTSTREGTSDGVASQRITMFKNISGHQGFFLSGS 951

Query: 932  RPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDN 991
            RP WCM+FRERLR H QLCDGSI AFTVLHNVNCNHGFIYVT+QG+LKICQLPS S YDN
Sbjct: 952  RPGWCMLFRERLRFHSQLCDGSIAAFTVLHNVNCNHGFIYVTAQGVLKICQLPSASIYDN 1011

Query: 992  YWPVQKIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSS 1051
            YWPVQKIPLKATPHQ+TY+AEKNLYPLIVS PV KPLNQVLS L+DQE G Q+DNHN+SS
Sbjct: 1012 YWPVQKIPLKATPHQVTYYAEKNLYPLIVSYPVSKPLNQVLSSLVDQEAGQQLDNHNMSS 1071

Query: 1052 VDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLL 1111
             DL RTYTVEE+E++ILEP+R+GGPW+T+A IPMQ+SE+ALTVRVVTL N +T ENETLL
Sbjct: 1072 DDLQRTYTVEEFEIQILEPERSGGPWETKAKIPMQTSEHALTVRVVTLLNASTGENETLL 1131

Query: 1112 AIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIAS 1171
            A+GTAYVQGEDVAARGRVLLFS G+N DN QN+VTEVYS+ELKGAISA+AS+QGHLLI+S
Sbjct: 1132 AVGTAYVQGEDVAARGRVLLFSFGKNGDNSQNVVTEVYSRELKGAISAVASIQGHLLISS 1191

Query: 1172 GPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNL 1231
            GPKIILHKW GTELNG+AF+DAPPLYVVS+N+VK+FILLGD+HKSIYFLSWKEQG+QL+L
Sbjct: 1192 GPKIILHKWNGTELNGVAFFDAPPLYVVSMNVVKSFILLGDVHKSIYFLSWKEQGSQLSL 1251

Query: 1232 LAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVG 1291
            LAKDF SLDCFATEFLIDGSTLSL VSDEQKNIQ+FYYAPKM ESWKG KLLSRAEFHVG
Sbjct: 1252 LAKDFESLDCFATEFLIDGSTLSLAVSDEQKNIQVFYYAPKMIESWKGLKLLSRAEFHVG 1311

Query: 1292 AHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQ 1351
            AHV+KFLRLQM+++         G+DK NRFALLFGTLDGS GCIAPLDE+TFRRLQSLQ
Sbjct: 1312 AHVSKFLRLQMVSS---------GADKINRFALLFGTLDGSFGCIAPLDEVTFRRLQSLQ 1362

Query: 1352 KKLVDSVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTG 1411
            KKLVD+VPHVAGLNP +FRQF S+GKA R GPDSIVDCELL HYEMLPLEEQLE+AHQ G
Sbjct: 1363 KKLVDAVPHVAGLNPLAFRQFRSSGKARRSGPDSIVDCELLCHYEMLPLEEQLELAHQIG 1422

Query: 1412 TTRSQILSNLNDLALGTSFL 1431
            TTR  IL +L DL++GTSFL
Sbjct: 1423 TTRYSILKDLVDLSVGTSFL 1442

CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. This subunit is involved in the RNA recognition step of the polyadenylation reaction.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q7XWP1\|CPSF1_ORYSJ Probable cleavage and polyadenylation specificity factor subunit 1 OS=Oryza sativa subsp. japonica GN=Os04g0252200 PE=3 SV=2	Back alignment and function description

>sp\|Q9V726\|CPSF1_DROME Cleavage and polyadenylation specificity factor subunit 1 OS=Drosophila melanogaster GN=Cpsf160 PE=1 SV=1	Back alignment and function description

>sp\|Q10569\|CPSF1_BOVIN Cleavage and polyadenylation specificity factor subunit 1 OS=Bos taurus GN=CPSF1 PE=1 SV=1	Back alignment and function description

>sp\|Q9EPU4\|CPSF1_MOUSE Cleavage and polyadenylation specificity factor subunit 1 OS=Mus musculus GN=Cpsf1 PE=1 SV=1	Back alignment and function description

>sp\|Q10570\|CPSF1_HUMAN Cleavage and polyadenylation specificity factor subunit 1 OS=Homo sapiens GN=CPSF1 PE=1 SV=2	Back alignment and function description

>sp\|Q7SEY2\|CFT1_NEUCR Protein cft-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cft-1 PE=3 SV=2	Back alignment and function description

>sp\|O74733\|CFT1_SCHPO Protein cft1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cft1 PE=3 SV=1	Back alignment and function description

>sp\|Q2TZ19\|CFT1_ASPOR Protein cft1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=cft1 PE=3 SV=1	Back alignment and function description

>sp\|Q5BDG7\|CFT1_EMENI Protein cft1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cft1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1431
225455571		1442	PREDICTED: cleavage and polyadenylation	0.989	0.981	0.800	0.0
296084122		1448	unnamed protein product [Vitis vinifera]	0.989	0.977	0.796	0.0
255539681		1461	cleavage and polyadenylation specificity	1.0	0.979	0.804	0.0
356559917		1447	PREDICTED: cleavage and polyadenylation	0.991	0.980	0.786	0.0
356530945		1449	PREDICTED: cleavage and polyadenylation	0.992	0.979	0.785	0.0
224120960		1455	predicted protein [Populus trichocarpa]	0.992	0.975	0.784	0.0
297792471		1444	hypothetical protein ARALYDRAFT_495232 [	0.988	0.979	0.750	0.0
449470342		1504	PREDICTED: cleavage and polyadenylation	0.996	0.948	0.740	0.0
30696088		1442	cleavage and polyadenylation specificity	0.987	0.979	0.747	0.0
24415580		1442	putative cleavage and polyadenylation sp	0.987	0.979	0.747	0.0

>gi\|225455571\|ref\|XP_002268371.1\| PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like [Vitis vinifera]	Back alignment and taxonomy information

 Score = 2441 bits (6327), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1166/1457 (80%), Positives = 1283/1457 (88%), Gaps = 41/1457 (2%)

Query: 1    MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVV 60
            MS+AAYKMMHWPTGI NC SGF+THSRAD+ PQI  IQT++L+SE P+KR IGP+PNL+V
Sbjct: 1    MSYAAYKMMHWPTGIENCASGFVTHSRADFAPQIAPIQTDDLESEWPTKRQIGPLPNLIV 60

Query: 61   TAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILS 120
            TAAN++E+Y+VRVQE+ S+ES+ S ETKR  +M GIS A+LELVC YRLHGNVE++ +L 
Sbjct: 61   TAANILEVYMVRVQEDDSRESRASAETKRGGVMAGISGAALELVCQYRLHGNVETMTVLP 120

Query: 121  QGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARG 180
             GG DNSRRRDSIILAF+DAKISVLEFDDSIHGLR +SMHCFE PEW HLKRG ESFARG
Sbjct: 121  SGGGDNSRRRDSIILAFQDAKISVLEFDDSIHGLRTSSMHCFEGPEWFHLKRGHESFARG 180

Query: 181  PLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRD 240
            PLVKVDPQGRC GVLVYGLQMIILKASQ G GLVGDE+   SG   SAR+ESS+VI+LRD
Sbjct: 181  PLVKVDPQGRCSGVLVYGLQMIILKASQAGYGLVGDEEALSSGSAVSARVESSYVISLRD 240

Query: 241  LDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWS 300
            LDMKHVKDF FVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWS
Sbjct: 241  LDMKHVKDFTFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWS 300

Query: 301  AMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSF 360
            A+NLPHDAYKLL VPSPIGGV+V+ AN+IHYHSQSASCALALNNYAVS D+SQE+PRSSF
Sbjct: 301  AVNLPHDAYKLLPVPSPIGGVVVISANSIHYHSQSASCALALNNYAVSADNSQEMPRSSF 360

Query: 361  SVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGN 420
            SVELDAA+ATWL NDVA+LSTKTG+L+LLT+ YDGRVV RLDLSK+  SVLTS I  IGN
Sbjct: 361  SVELDAANATWLSNDVAMLSTKTGELLLLTLAYDGRVVHRLDLSKSRASVLTSGIAAIGN 420

Query: 421  SLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVN 480
            SLFFLGSRLGDSLLVQFT     S+LSS +KEE GDIE D PS KRLR+SSSDALQDMVN
Sbjct: 421  SLFFLGSRLGDSLLVQFT-----SILSSSVKEEVGDIEGDVPSAKRLRKSSSDALQDMVN 475

Query: 481  GEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYE 540
            GEELSLYGSA N+TE++QKTFSF+VRDS +N+GPLKDF+YGLRINAD  ATGI+KQSNYE
Sbjct: 476  GEELSLYGSAPNSTETSQKTFSFSVRDSFINVGPLKDFAYGLRINADPKATGIAKQSNYE 535

Query: 541  LV--------------------------ELPGCKGIWTVYHKSSRGHNADSSRMAAYDDE 574
            LV                          ELPGCKGIWTVYHK++RGHNADS++MA  DDE
Sbjct: 536  LVCCSGHGKNGALCILQQSIRPEMITEVELPGCKGIWTVYHKNTRGHNADSTKMATKDDE 595

Query: 575  YHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARIL 634
            YHAYLIISLE+RTMVLETADLL EVTESVDY+VQG TI+AGNLFGRRRV+QV+ RGARIL
Sbjct: 596  YHAYLIISLESRTMVLETADLLGEVTESVDYYVQGCTISAGNLFGRRRVVQVYARGARIL 655

Query: 635  DGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSV 694
            DG++MTQDL            SE+STVLSVSIADPYVLL MSDG+I+LLVGDPSTCTVS+
Sbjct: 656  DGAFMTQDLPI----------SESSTVLSVSIADPYVLLRMSDGNIQLLVGDPSTCTVSI 705

Query: 695  QTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYS 754
              PA  ESSKK +S+CTLYHDKGPEPWLRKTSTDAWLSTG+GEAIDGADG   DQGDIY 
Sbjct: 706  NIPAVFESSKKSISACTLYHDKGPEPWLRKTSTDAWLSTGIGEAIDGADGAAQDQGDIYC 765

Query: 755  VVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQG 814
            VV YESG LEIFDVPNFNCVF+VDKF+SG  H+VDT + E  +D++  ++ +SEE   QG
Sbjct: 766  VVSYESGDLEIFDVPNFNCVFSVDKFMSGNAHLVDTLILEPSEDTQKVMSKNSEEEADQG 825

Query: 815  RKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTS 874
            RKEN H++KVVELAMQRWS  HSRPFLF ILTDGTILCY AYL+EGPE+T K+++ VS  
Sbjct: 826  RKENAHNIKVVELAMQRWSGQHSRPFLFGILTDGTILCYHAYLYEGPESTPKTEEAVSAQ 885

Query: 875  RSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGSRPC 934
             SLS+SNVSASRLRNLRF R PLD YTREE   G    R+T+FKNI G QG FLSGSRP 
Sbjct: 886  NSLSISNVSASRLRNLRFVRVPLDTYTREEALSGTTSPRMTVFKNIGGCQGLFLSGSRPL 945

Query: 935  WCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWP 994
            W MVFRER+RVHPQLCDGSIVAFTVLHN+NCNHG IYVTSQG LKICQLP+ S+YDNYWP
Sbjct: 946  WFMVFRERIRVHPQLCDGSIVAFTVLHNINCNHGLIYVTSQGFLKICQLPAVSSYDNYWP 1005

Query: 995  VQKIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDL 1054
            VQKIPLK TPHQ+TYFAEKNLYPLIVSVPVLKPLN VLS L+DQE GHQ++N NLSS +L
Sbjct: 1006 VQKIPLKGTPHQVTYFAEKNLYPLIVSVPVLKPLNHVLSSLVDQEAGHQLENDNLSSDEL 1065

Query: 1055 HRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIG 1114
            HR+Y+V+E+EVR+LEP+++G PWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIG
Sbjct: 1066 HRSYSVDEFEVRVLEPEKSGAPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIG 1125

Query: 1115 TAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASGPK 1174
            TAYVQGEDVAARGRVLLFS G+N DN QNLV+E+YSKELKGAISA+ASLQGHLLIASGPK
Sbjct: 1126 TAYVQGEDVAARGRVLLFSVGKNTDNSQNLVSEIYSKELKGAISAVASLQGHLLIASGPK 1185

Query: 1175 IILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAK 1234
            IILHKWTGTELNG+AF+DAPPLYVVSLNIVKNFILLGDIH+SIYFLSWKEQGAQLNLLAK
Sbjct: 1186 IILHKWTGTELNGVAFFDAPPLYVVSLNIVKNFILLGDIHRSIYFLSWKEQGAQLNLLAK 1245

Query: 1235 DFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHV 1294
            DFGSLDCFATEFLIDGSTLSL+VSD+QKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHV
Sbjct: 1246 DFGSLDCFATEFLIDGSTLSLIVSDDQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHV 1305

Query: 1295 TKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKL 1354
            TKFLRLQML  SSDRT A  GSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKL
Sbjct: 1306 TKFLRLQMLPASSDRTSATQGSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKL 1365

Query: 1355 VDSVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTGTTR 1414
            VD+VPHVAGLNPRSFRQF SNGKAHRPGPD+IVDCELL HYEMLP EEQLEIA Q GTTR
Sbjct: 1366 VDAVPHVAGLNPRSFRQFRSNGKAHRPGPDNIVDCELLCHYEMLPFEEQLEIAQQIGTTR 1425

Query: 1415 SQILSNLNDLALGTSFL 1431
             QILSNLNDL+LGTSFL
Sbjct: 1426 MQILSNLNDLSLGTSFL 1442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296084122\|emb\|CBI24510.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255539681\|ref\|XP_002510905.1\| cleavage and polyadenylation specificity factor cpsf, putative [Ricinus communis] gi\|223550020\|gb\|EEF51507.1\| cleavage and polyadenylation specificity factor cpsf, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356559917\|ref\|XP_003548242.1\| PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356530945\|ref\|XP_003534039.1\| PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|224120960\|ref\|XP_002318462.1\| predicted protein [Populus trichocarpa] gi\|222859135\|gb\|EEE96682.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297792471\|ref\|XP_002864120.1\| hypothetical protein ARALYDRAFT_495232 [Arabidopsis lyrata subsp. lyrata] gi\|297309955\|gb\|EFH40379.1\| hypothetical protein ARALYDRAFT_495232 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|449470342\|ref\|XP_004152876.1\| PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi|30696088|ref|NP_199979.2| cleavage and polyadenylation specificity factor subunit 1 [Arabidopsis thaliana] gi|290457637|sp|Q9FGR0.2|CPSF1_ARATH RecName: Full=Cleavage and polyadenylation specificity factor subunit 1; AltName: Full=Cleavage and polyadenylation specificity factor 160 kDa subunit; Short=AtCPSF160; Short=CPSF 160 kDa subunit gi|332008729|gb|AED96112.1| cleavage and polyadenylation specificity factor subunit 1 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|24415580\|gb\|AAN41460.1\| putative cleavage and polyadenylation specificity factor 160 kDa subunit [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1431
TAIR\|locus:2153122		1442	CPSF160 "cleavage and polyaden	0.610	0.605	0.762	0.0
ZFIN\|ZDB-GENE-040709-2		1451	cpsf1 "cleavage and polyadenyl	0.422	0.416	0.310	5.7e-158
UNIPROTKB\|F1PC28		1398	CPSF1 "Uncharacterized protein	0.412	0.422	0.328	2.4e-157
UNIPROTKB\|Q10569		1444	CPSF1 "Cleavage and polyadenyl	0.412	0.409	0.323	4.5e-156
UNIPROTKB\|Q10570		1443	CPSF1 "Cleavage and polyadenyl	0.415	0.412	0.321	5.5e-155
MGI\|MGI:2679722		1441	Cpsf1 "cleavage and polyadenyl	0.408	0.405	0.329	5.1e-150
FB\|FBgn0024698		1455	Cpsf160 "Cleavage and polyaden	0.346	0.340	0.305	6.4e-130
UNIPROTKB\|F1RSN8		1108	CPSF1 "Uncharacterized protein	0.342	0.442	0.353	5.9e-127
DICTYBASE\|DDB_G0281585		1628	cpsf1 "cleavage and polyadenyl	0.240	0.211	0.329	5.7e-116
RGD\|1306406		1386	Cpsf1 "cleavage and polyadenyl	0.308	0.318	0.353	2.6e-113

TAIR\|locus:2153122 CPSF160 "cleavage and polyadenylation specificity factor 160" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3551 (1255.1 bits), Expect = 0., Sum P(2) = 0.
 Identities = 679/890 (76%), Positives = 760/890 (85%)

Query:   542 VELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTE 601
             VELPGCKGIWTVYHKSSRGHNADSS+MAA +DEYHAYLIISLEARTMVLETADLLTEVTE
Sbjct:   570 VELPGCKGIWTVYHKSSRGHNADSSKMAADEDEYHAYLIISLEARTMVLETADLLTEVTE 629

Query:   602 SVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPXXXXXXXXXXXXTV 661
             SVDY+VQGRTIAAGNLFGRRRVIQVFE GARILDGS+M Q+LSFG             TV
Sbjct:   630 SVDYYVQGRTIAAGNLFGRRRVIQVFEHGARILDGSFMNQELSFGASNSESNSGSESSTV 689

Query:   662 LSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPW 721
              SVSIADPYVLL M+D SIRLLVGDPSTCTVS+ +P+ +E SK+ +S+CTLYHDKGPEPW
Sbjct:   690 SSVSIADPYVLLRMTDDSIRLLVGDPSTCTVSISSPSVLEGSKRKISACTLYHDKGPEPW 749

Query:   722 LRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFV 781
             LRK STDAWLS+GVGEA+D  DGGP DQGDIY VVCYESGALEIFDVP+FNCVF+VDKF 
Sbjct:   750 LRKASTDAWLSSGVGEAVDSVDGGPQDQGDIYCVVCYESGALEIFDVPSFNCVFSVDKFA 809

Query:   782 SGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFL 841
             SGR H+ D  + E     E E+N +SE+ T    KE I + +VVELAMQRWS HH+RPFL
Sbjct:   810 SGRRHLSDMPIHEL----EYELNKNSEDNTSS--KE-IKNTRVVELAMQRWSGHHTRPFL 862

Query:   842 FAILTDGTILCYQAYLFEGPENTSKSDDPXXXXXXXXXXXXXXXXXXXLRFSRTPLDAYT 901
             FA+L DGTILCY AYLF+G ++T K+++                    L+F R PLD  T
Sbjct:   863 FAVLADGTILCYHAYLFDGVDST-KAENSLSSENPAALNSSGSSKLRNLKFLRIPLDTST 921

Query:   902 REETPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLH 961
             RE T  G   QRIT+FKNISGHQGFFLSGSRP WCM+FRERLR H QLCDGSI AFTVLH
Sbjct:   922 REGTSDGVASQRITMFKNISGHQGFFLSGSRPGWCMLFRERLRFHSQLCDGSIAAFTVLH 981

Query:   962 NVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKIPLKATPHQITYFAEKNLYPLIVS 1021
             NVNCNHGFIYVT+QG+LKICQLPS S YDNYWPVQKIPLKATPHQ+TY+AEKNLYPLIVS
Sbjct:   982 NVNCNHGFIYVTAQGVLKICQLPSASIYDNYWPVQKIPLKATPHQVTYYAEKNLYPLIVS 1041

Query:  1022 VPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRA 1081
              PV KPLNQVLS L+DQE G Q+DNHN+SS DL RTYTVEE+E++ILEP+R+GGPW+T+A
Sbjct:  1042 YPVSKPLNQVLSSLVDQEAGQQLDNHNMSSDDLQRTYTVEEFEIQILEPERSGGPWETKA 1101

Query:  1082 TIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNP 1141
              IPMQ+SE+ALTVRVVTL N +T ENETLLA+GTAYVQGEDVAARGRVLLFS G+N DN 
Sbjct:  1102 KIPMQTSEHALTVRVVTLLNASTGENETLLAVGTAYVQGEDVAARGRVLLFSFGKNGDNS 1161

Query:  1142 QNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSL 1201
             QN+VTEVYS+ELKGAISA+AS+QGHLLI+SGPKIILHKW GTELNG+AF+DAPPLYVVS+
Sbjct:  1162 QNVVTEVYSRELKGAISAVASIQGHLLISSGPKIILHKWNGTELNGVAFFDAPPLYVVSM 1221

Query:  1202 NIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQ 1261
             N+VK+FILLGD+HKSIYFLSWKEQG+QL+LLAKDF SLDCFATEFLIDGSTLSL VSDEQ
Sbjct:  1222 NVVKSFILLGDVHKSIYFLSWKEQGSQLSLLAKDFESLDCFATEFLIDGSTLSLAVSDEQ 1281

Query:  1262 KNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNR 1321
             KNIQ+FYYAPKM ESWKG KLLSRAEFHVGAHV+KFLRLQM+++         G+DK NR
Sbjct:  1282 KNIQVFYYAPKMIESWKGLKLLSRAEFHVGAHVSKFLRLQMVSS---------GADKINR 1332

Query:  1322 FALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAHRP 1381
             FALLFGTLDGS GCIAPLDE+TFRRLQSLQKKLVD+VPHVAGLNP +FRQF S+GKA R 
Sbjct:  1333 FALLFGTLDGSFGCIAPLDEVTFRRLQSLQKKLVDAVPHVAGLNPLAFRQFRSSGKARRS 1392

Query:  1382 GPDSIVDCELLSHYEMLPLEEQLEIAHQTGTTRSQILSNLNDLALGTSFL 1431
             GPDSIVDCELL HYEMLPLEEQLE+AHQ GTTR  IL +L DL++GTSFL
Sbjct:  1393 GPDSIVDCELLCHYEMLPLEEQLELAHQIGTTRYSILKDLVDLSVGTSFL 1442

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006378 "mRNA polyadenylation" evidence=ISS

GO:0006379 "mRNA cleavage" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0006397 "mRNA processing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

ZFIN\|ZDB-GENE-040709-2 cpsf1 "cleavage and polyadenylation specific factor 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PC28 CPSF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q10569 CPSF1 "Cleavage and polyadenylation specificity factor subunit 1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q10570 CPSF1 "Cleavage and polyadenylation specificity factor subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:2679722 Cpsf1 "cleavage and polyadenylation specific factor 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

FB\|FBgn0024698 Cpsf160 "Cleavage and polyadenylation specificity factor 160" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RSN8 CPSF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0281585 cpsf1 "cleavage and polyadenylation specificity factor 160 kDa subunit" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

RGD\|1306406 Cpsf1 "cleavage and polyadenylation specific factor 1, 160kDa" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FGR0	CPSF1_ARATH	No assigned EC number	0.7479	0.9874	0.9798	yes	no
Q7XWP1	CPSF1_ORYSJ	No assigned EC number	0.6406	0.9783	0.9715	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00038486001	SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (1448 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037665001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (740 aa)	•	•	•	•	0.865
	GSVIVG00016982001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (771 aa)		•	•	•	0.757
	GSVIVG00020879001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (427 aa)		•	•	•	0.681
	GSVIVG00028411001	SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (572 aa)		•		•	0.676
	GSVIVG00000022001	SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (461 aa)			•	•	0.517
	GSVIVG00006902001	SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (863 aa)			•	•	0.510
	GSVIVG00023663001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (97 aa)	•		•		0.506
	GSVIVG00010279001	SubName- Full=Chromosome undetermined scaffold_252, whole genome shotgun sequence; (561 aa)	•		•		0.506
	GSVIVG00037110001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (512 aa)	•		•		0.496
	GSVIVG00001949001	SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (2072 aa)	•		•		0.495

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1431
pfam03178		318	pfam03178, CPSF_A, CPSF A subunit region	6e-92
COG5161		1319	COG5161, SFT1, Pre-mRNA cleavage and polyadenylati	4e-45
COG5161		1319	COG5161, SFT1, Pre-mRNA cleavage and polyadenylati	2e-22
pfam10433		513	pfam10433, MMS1_N, Mono-functional DNA-alkylating	1e-07

>gnl\|CDD\|217409 pfam03178, CPSF_A, CPSF A subunit region	Back alignment and domain information

 Score =  299 bits (769), Expect = 6e-92
 Identities = 115/338 (34%), Positives = 187/338 (55%), Gaps = 24/338 (7%)

Query: 1063 YEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGED 1122
              +R+++P      W+   T+ ++ +E  L+V+ V L ++  +  +  L +GTA+  GED
Sbjct: 2    SCIRLVDPIT----WEVIDTLELEENEAVLSVKSVNLEDS--EGRKEYLVVGTAFDLGED 55

Query: 1123 VAAR-GRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWT 1181
             AAR GR+ +F       N +  +  V+  E+KGA++AL   QG LL   G K+ ++   
Sbjct: 56   PAARSGRIYVFEIIEPETNRK--LKLVHKTEVKGAVTALCEFQGRLLAGQGQKLRVYDLG 113

Query: 1182 GTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDC 1241
              +L   AF D P  YVVSL +  N I++GD+ KS+ FL + E+  +L L A+D      
Sbjct: 114  KDKLLPKAFLDTPITYVVSLKVFGNRIIVGDLMKSVTFLGYDEEPYRLILFARDTQPRWV 173

Query: 1242 FATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQ-KLLSRAEFHVGAHVTKFLRL 1300
             A EFL+D  T  ++ +D+  N+ +  Y P+  ES  G  +LL RAEFH+G  VT F + 
Sbjct: 174  TAAEFLVDYDT--ILGADKFGNLHVLRYDPEAPESLDGDPRLLHRAEFHLGDIVTSFQKG 231

Query: 1301 QMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAP-LDELTFRRLQSLQKKLVDSVP 1359
             ++  +          + T+   +L+GTLDGSIG + P + E  +RRLQ LQ++L D +P
Sbjct: 232  SLVPKTGGA-------ESTSSPQILYGTLDGSIGLLVPFISEEEYRRLQHLQQQLRDELP 284

Query: 1360 HVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEM 1397
            H+ GL+PR+FR ++S     +     ++D +LL  +  
Sbjct: 285  HLCGLDPRAFRSYYSRSPPVKN----VIDGDLLERFLD 318

This family includes a region that lies towards the C-terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs. The function of the aligned region is unknown but may be involved in RNA/DNA binding. Length = 318

>gnl\|CDD\|227490 COG5161, SFT1, Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]	Back alignment and domain information

>gnl\|CDD\|227490 COG5161, SFT1, Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]	Back alignment and domain information

>gnl\|CDD\|220751 pfam10433, MMS1_N, Mono-functional DNA-alkylating methyl methanesulfonate N-term	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1431
KOG1896		1366	consensus mRNA cleavage and polyadenylation factor	100.0
KOG1897		1096	consensus Damage-specific DNA binding complex, sub	100.0
KOG1898		1205	consensus Splicing factor 3b, subunit 3 [RNA proce	100.0
COG5161		1319	SFT1 Pre-mRNA cleavage and polyadenylation specifi	100.0
PF10433		504	MMS1_N: Mono-functional DNA-alkylating methyl meth	100.0
PF03178		321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	100.0
KOG0318		603	consensus WD40 repeat stress protein/actin interac	98.45
KOG2048		691	consensus WD40 repeat protein [General function pr	98.25
PRK11028		330	6-phosphogluconolactonase; Provisional	97.1
cd00200		289	WD40 WD40 domain, found in a number of eukaryotic	96.69
PF03178		321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.54
KOG1274		933	consensus WD40 repeat protein [General function pr	96.53
KOG1273		405	consensus WD40 repeat protein [General function pr	96.45
KOG1446		311	consensus Histone H3 (Lys4) methyltransferase comp	96.44
cd00200		289	WD40 WD40 domain, found in a number of eukaryotic	96.13
PLN00181		793	protein SPA1-RELATED; Provisional	95.87
KOG1539		910	consensus WD repeat protein [General function pred	95.85
PRK11028		330	6-phosphogluconolactonase; Provisional	95.75
KOG1036		323	consensus Mitotic spindle checkpoint protein BUB3,	95.65
KOG1539		910	consensus WD repeat protein [General function pred	95.3
KOG2055		514	consensus WD40 repeat protein [General function pr	95.17
KOG2106		626	consensus Uncharacterized conserved protein, conta	94.86
KOG0291		893	consensus WD40-repeat-containing subunit of the 18	94.71
KOG1036		323	consensus Mitotic spindle checkpoint protein BUB3,	94.54
KOG0283		712	consensus WD40 repeat-containing protein [Function	93.87
KOG0306		888	consensus WD40-repeat-containing subunit of the 18	93.75
PF10282		345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	93.5
PF08596		395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	93.49
KOG2110		391	consensus Uncharacterized conserved protein, conta	92.91
PLN00181		793	protein SPA1-RELATED; Provisional	92.79
KOG0285		460	consensus Pleiotropic regulator 1 [RNA processing	92.57
KOG0646		476	consensus WD40 repeat protein [General function pr	92.5
KOG0306		888	consensus WD40-repeat-containing subunit of the 18	92.0
KOG2321		703	consensus WD40 repeat protein [General function pr	92.0
KOG0650		733	consensus WD40 repeat nucleolar protein Bop1, invo	91.36
KOG2111		346	consensus Uncharacterized conserved protein, conta	91.22
KOG0282		503	consensus mRNA splicing factor [Function unknown]	91.18
KOG0319		775	consensus WD40-repeat-containing subunit of the 18	91.05
KOG1273		405	consensus WD40 repeat protein [General function pr	90.9
PTZ00420		568	coronin; Provisional	90.34
KOG0294		362	consensus WD40 repeat-containing protein [Function	90.25
KOG0278		334	consensus Serine/threonine kinase receptor-associa	90.19
KOG1897		1096	consensus Damage-specific DNA binding complex, sub	89.88
KOG0315		311	consensus G-protein beta subunit-like protein (con	89.67
KOG2055		514	consensus WD40 repeat protein [General function pr	89.51
KOG4378		673	consensus Nuclear protein COP1 [Signal transductio	88.97
KOG0283		712	consensus WD40 repeat-containing protein [Function	88.07
PF08596		395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	88.06
PF14783		111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	88.01
PF14727		418	PHTB1_N: PTHB1 N-terminus	87.56
KOG2096		420	consensus WD40 repeat protein [General function pr	87.17
KOG0315		311	consensus G-protein beta subunit-like protein (con	86.79
COG2706		346	3-carboxymuconate cyclase [Carbohydrate transport	86.45
KOG0319		775	consensus WD40-repeat-containing subunit of the 18	86.1
KOG0277		311	consensus Peroxisomal targeting signal type 2 rece	85.74
KOG0299		479	consensus U3 snoRNP-associated protein (contains W	85.71
KOG0772		641	consensus Uncharacterized conserved protein, conta	85.68
KOG0296		399	consensus Angio-associated migratory cell protein	85.36
KOG0266		456	consensus WD40 repeat-containing protein [General	85.28
KOG0647		347	consensus mRNA export protein (contains WD40 repea	85.27
KOG0290		364	consensus Conserved WD40 repeat-containing protein	85.02
KOG3881		412	consensus Uncharacterized conserved protein [Funct	84.48
COG2706		346	3-carboxymuconate cyclase [Carbohydrate transport	84.33
KOG0296		399	consensus Angio-associated migratory cell protein	83.74
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	83.51
KOG2106		626	consensus Uncharacterized conserved protein, conta	83.33
KOG0282		503	consensus mRNA splicing factor [Function unknown]	80.79
PTZ00420		568	coronin; Provisional	80.58
KOG0772		641	consensus Uncharacterized conserved protein, conta	80.58
PF14727		418	PHTB1_N: PTHB1 N-terminus	80.51
PF08450		246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	80.17

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=8.7e-196  Score=1751.80  Aligned_cols=1286  Identities=41%  Similarity=0.683  Sum_probs=1066.2

Q ss_pred             ccceeccccCCceeeeeEEEEeecCCCCCCCCCcccccccccccCCCCCCCCCCCcEEEEcCCeEEEEEEEEeccCCccc
Q 000548            2 SFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKES   81 (1431)
Q Consensus         2 ~~~~~~~~~~pT~V~~s~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLvvak~~~Leiy~v~~~~~g~~~~   81 (1431)
                      .|++|++.|+||+|+||++|+||.....                           ||||+++|.|+||++..++++.+. 
T Consensus         1 m~~vykq~h~~T~ve~s~ag~Ft~~~~~---------------------------nlvV~~~N~L~vyri~~~~e~~t~-   52 (1366)
T KOG1896|consen    1 MFAVYKQEHDPTVVENSSAGLFTNNRTE---------------------------NLVVAGTNILRVYRISRDAEALTK-   52 (1366)
T ss_pred             CcchhhhccCchhhccceeeeEecCCCc---------------------------ceEEecccEEEEEEeccchhhccc-
Confidence            3789999999999999999999987765                           999999999999999865333211 


Q ss_pred             cCCccccccccccccccceEEEEEEEEeeeeEeEEEEEecCCCCCCCCCcEEEEEeccceEEEEEEeCCCCCeeEEeeee
Q 000548           82 KNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHC  161 (1431)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~L~lv~~~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~~~~~klsil~~d~~~~~l~t~Slh~  161 (1431)
                            .+...|+...+.+|+|+++|.+||+|++|++++..|+    .+|+|+++|++||+|+|+||+.+|+|+|.||||
T Consensus        53 ------~~~~~~~~~~~~~LeLv~~~~l~GnV~si~~~~~~gs----~rD~LlL~f~~AKiSvlefD~~t~sl~TlSLHy  122 (1366)
T KOG1896|consen   53 ------NDPGDMGKAHRKKLELVAEFKLFGNVTSIAKLPLKGS----NRDALLLLFKDAKISVLEFDPQTNSLRTLSLHY  122 (1366)
T ss_pred             ------cCccccccccceEEEEEEEEEeecceeeEEEeecCCC----CcceEEEEeccceEEEEEecCCccceeeeeeEE
Confidence                  1223344455567999999999999999999999987    699999999999999999999999999999999


Q ss_pred             ecCcccccccCCCccccCCCeEEECCCCcEEEEEecCceEEEEeCccCCCCCCCCCCCCCCCCCcccceeccEEEEcccC
Q 000548          162 FESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDL  241 (1431)
Q Consensus       162 ~E~~~~~~~~~g~~~~~~~~~l~vDP~~Rc~~l~~~~~~L~ilp~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~i~l~~l  241 (1431)
                      ||.+++   +.|+.....+|.++|||++||++|++|+..|+||||++.. .+++++ ....++-..+++.+||+|.+++|
T Consensus       123 fE~~~~---~~~~~~~~~~p~vrvDPdsrCa~llvyg~~m~iLpf~~~e-~~~~~~-~~~~~~~~ss~~~pSyvi~~reL  197 (1366)
T KOG1896|consen  123 FEGPEF---RKGLVGRAKIPTVRVDPDSRCALLLVYGLRMAILPFRVNE-HLDDEE-LFPSGFSKSSFTAPSYVIALREL  197 (1366)
T ss_pred             eccccc---cccccccccCceEEECCCCCeEEEEEecceEEEeeccccc-cccccc-cccccccccccccceeEEEhhhh
Confidence            999864   4555555678999999999999999999999999998752 333322 22222233457899999999999


Q ss_pred             C--CCceeeEeeccCCCcceEEEEeecCCCcccccccccceeEEEEEEEeecccccceeeEeccCCcccceEEEecCCCC
Q 000548          242 D--MKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIG  319 (1431)
Q Consensus       242 d--i~~V~D~~FL~gy~~PtlavL~~~~~tw~gr~~~~~~t~~~~~~sLd~~~k~~~~i~s~~~lp~~~~~LipvP~p~g  319 (1431)
                      |  |+||+|++|||||++||||||||+.+||+||+..|+|||.+.+++||+++|.||+||++.+||+||+.+.++|.|+|
T Consensus       198 deki~niiD~qFLhgY~ePTl~ILyep~~tw~grv~~r~dt~~~vaisLni~q~~hpVI~sv~sLP~D~~~~~~vp~piG  277 (1366)
T KOG1896|consen  198 DEKIKNIIDFQFLHGYYEPTLAILYEPEQTWAGRVILRKDTCVLVAISLNITQKVHPVIWSVLSLPFDCYQATAVPTPIG  277 (1366)
T ss_pred             hhhhccceeEEeecCcccceEEEEecccccccceEEEecCcEEEEEEEcCccccccceEeeeccCChhhhhceeecccCc
Confidence            8  88999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecCeEEEEecCC-cceEEccCCCccCCCCcccCCCCceeeecceeEEEeeCceEEEEeCCCCEEEEEEEEc-Cee
Q 000548          320 GVLVVGANTIHYHSQSA-SCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYD-GRV  397 (1431)
Q Consensus       320 GvLVi~~n~I~y~~~~~-~~~~~~n~~~~~~~~~~~~p~~~~~~~ld~~~~~~~~~~~~Ll~~~~G~l~~l~l~~d-g~~  397 (1431)
                      ||||++.|.++|.+|++ ++++++|++++..+.++.+||+.+.+.+|++..+|++.++++++..+||+|+|+|.+| +|.
T Consensus       278 gvLv~~~n~~iy~nqsv~~~gv~LNs~a~~~t~fpl~~qs~v~i~ld~a~~t~i~~dk~vis~~~Gd~y~Ltl~~D~~r~  357 (1366)
T KOG1896|consen  278 GVLVFTVNNLIYLNQSVSPYGVALNSYASKYTAFPLIPQSGVRIELDCANATWISNDKCVISLKNGDLYLLTLILDIGRS  357 (1366)
T ss_pred             cEEEEeeeeEEEEccCCCceeEEecchhhcccCCccccccceEEEEeeccceeecCCeEEEecCCCcEEEEEEEeccccc
Confidence            99999999999999998 5999999999999999999999999999999999999999999999999999999999 789


Q ss_pred             eeeEEEEecCCCccccceEEecCCeEEEEeecCCeeEEEEeeCCCccccCCCCccccCCcccCCccchhccCCCcchhhc
Q 000548          398 VQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQD  477 (1431)
Q Consensus       398 V~~l~l~~~~~~~~~s~l~~l~~g~lFvgS~~GDS~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  477 (1431)
                      |+.+++..+....+++|++...+++||+||+.|||+|++|.+....+.+.  ...++.+.+....+.++.+...+..+|+
T Consensus       358 V~~~~f~k~~asvl~t~~v~~~n~llFlGSrlgnSlll~~s~~~~~~~e~--~~re~~d~~~~~~~~~~~d~~~d~~~~d  435 (1366)
T KOG1896|consen  358 VQLLHFDKFKASVLATSIVGHGNNLLFLGSRLGNSLLLRFSELLQRASEG--VRREEGDTESDGYSKKRVDDTQDVRRDD  435 (1366)
T ss_pred             hhhhhhhhhhcccceeeeeccCCccEEEEecCCCEEEEEehhccccCCcc--ccccccCCcCCcchhhcccchhhhhhhh
Confidence            99999999999999999999999999999999999999999876522221  1111111222123333332111111111


Q ss_pred             ccCcccc------cccCCCCCCcccccceeEEEEeeeecccCCccccccccccccCC---------------CccCCCCC
Q 000548          478 MVNGEEL------SLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADA---------------SATGISKQ  536 (1431)
Q Consensus       478 ~~~~~~~------~l~~~~~~~~~~~~~~~~l~v~d~l~NigPI~D~~vg~~~~~d~---------------~~sG~g~~  536 (1431)
                      . ..++.      +-||++...+   ...+.|++||+|+|+|||.||++|.....+.               .|+|+|+.
T Consensus       436 ~-~~~~~~~~g~~~~~g~~a~~t---~~~f~fevcDsL~NIGPi~~~avG~~~~~~~~~~gl~~~~~~~elV~~sGhgkn  511 (1366)
T KOG1896|consen  436 E-KSAELFEAGSEENYGSGAQET---VQPFSFEVCDSLPNIGPITDFAVGKRSSASEAVEGLSPHNKCLELVATSGHGKN  511 (1366)
T ss_pred             h-hccchhhccccccCCccccee---eeeeEEeehhccccccccccceeccccchhhhccCCCCCCCeEEEEEeccCCCC
Confidence            1 11111      2232221111   1238899999999999999999998754321               18899999


Q ss_pred             CCeEE------------EecCCCCEEEEEEecCCCCCCCCcccccccCcCcceEEEEEccccceEEEeccceeeeecccc
Q 000548          537 SNYEL------------VELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVD  604 (1431)
Q Consensus       537 g~L~~------------~~L~g~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLvlS~~~~T~Vl~~g~~~eev~~~~g  604 (1431)
                      |.|.+            ++|+||.++|||..+....+         .++..|.||++|..++|+||++|+++.|++. .+
T Consensus       512 gaL~V~r~sI~P~i~t~fel~Gc~~iWtV~~~~~~~~---------~~~~~h~~lilS~e~~t~il~tge~~~Ev~~-s~  581 (1366)
T KOG1896|consen  512 GALSVIRRSIRPEIATEFELPGCVDIWTVFIKGRKRE---------EDNTQHLYLILSTESRTMILETGEELLEVSG-SG  581 (1366)
T ss_pred             cceEEEeecccceeeEEEEecCeeeEEEEEEeccccc---------cccCcceEEEeecccchhhhhccchhhhccc-ce
Confidence            99987            68999999999998644322         2234599999999999999999999999975 58


Q ss_pred             cccccceEEEeeecCCcEEEEEecCcEEEEcCC-cceEEEeCCCCCCCCCCCCCCccEEEEEEeCCEEEEEEeCCcEEEE
Q 000548          605 YFVQGRTIAAGNLFGRRRVIQVFERGARILDGS-YMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLL  683 (1431)
Q Consensus       605 F~~~~~TI~~g~l~~~~~ivQVt~~~irl~~~~-~~~~~~~~~~~~~~~~~~~~~~~I~~as~~d~~vll~~~~g~i~~l  683 (1431)
                      |..+++||++|+++++.+||||||+++|+++++ .+.|.++..          .+..+++++++||||++....|.+.+|
T Consensus       582 f~~~~~Tl~~gnlg~~rriVQVtp~~~rllDg~~r~lq~i~fd----------~~~~vv~~sv~dpyv~v~~~~g~i~~~  651 (1366)
T KOG1896|consen  582 FTRDGPTLFAGNLGNERRIVQVTPSGLRLLDGDLRMLQRIPFD----------SGAIVVQTSVADPYVAVRSSEGRITLY  651 (1366)
T ss_pred             eEeccceEEEEecCCceEEEEEccceeEEecCcchheeEeccc----------cCCcEEEEeccCceEEEEEcCCceEEE
Confidence            999999999999988899999999999999995 588888883          445699999999999999999999999


Q ss_pred             EecCCCceEEeecCcccccCCCceEEEEeeccCCC-------------CcccccccccccccCCccccccCCCCCCCCCC
Q 000548          684 VGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGP-------------EPWLRKTSTDAWLSTGVGEAIDGADGGPLDQG  750 (1431)
Q Consensus       684 ~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  750 (1431)
                      .++....+|.+.++  +   ...+.+++++.|.+.             .++.+.. .++...... .+.+.+++....+.
T Consensus       652 ~l~~~s~rl~~~~~--~---s~~~~sv~~~~dlsg~f~~~s~l~~k~~~~~gr~~-~~~~~~~~~-~kv~~~egg~~~~~  724 (1366)
T KOG1896|consen  652 DLEEKSHRLALHDP--M---SFKVVSVSLPADLSGMFTTLSDLSLKGNEANGRSS-EAEGLQSLP-CKVDDEEGGSPEQE  724 (1366)
T ss_pred             EeccccchhhccCc--c---cceeEEEechhhhccceEEEeeecccCcccccccc-cccccccCC-ccccCCCCCCcccC
Confidence            98776555655554  1   344666666666432             2222221 111111111 22332332111122


Q ss_pred             cEEEEEEecCCeEEEEECCCCceeEEecccccccccccccccccccccccccccCCCccCCCCCcccccccccEEEEEee
Q 000548          751 DIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQ  830 (1431)
Q Consensus       751 ~~~l~v~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~l~~~~~~~~~~~s~q~l~~~~~~~~~~~~~~~~~~~~i~~i~~~  830 (1431)
                      .+||++++++|+++||++|++++|+.++.|+.++.+|.+.......   .|              + ..++..++++..+
T Consensus       725 ~~~~~~~~e~g~leiy~~pd~~lVf~v~~f~~~~~~L~~~~~~~~~---~~--------------~-~s~~~~l~q~~~~  786 (1366)
T KOG1896|consen  725 PYWCVFVTESGTLEIYALPDFDLVFEVDMFDTGNRVLMDSRLRGPT---TN--------------K-ESEDLELKQLFVN  786 (1366)
T ss_pred             ceEEEEEcCCCceEEEccCCcceEEEeeccCCCcceEEeecccCcc---cc--------------c-cccchHHHHhhcc
Confidence            3999999999999999999999999999999999998875443220   00              1 1223567777778


Q ss_pred             eccCC--CCccEEEEEeeCCeEEEEEeeecCCCCCCCCCCCCCcccccccccccccccccceeEEeccCCccCCCC----
Q 000548          831 RWSAH--HSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREE----  904 (1431)
Q Consensus       831 ~~g~~--~~~~~L~vgl~~G~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~rf~k~~~~~~~~~~----  904 (1431)
                      .+|.+  .++|||++-+.+|+++.|++|+..+                        ++...++|+|+|+.....+.    
T Consensus       787 ~L~~e~~~~e~~L~lv~~~~eil~Ykaf~~~~------------------------~~~~~~~f~kvp~~~~~~~~~p~~  842 (1366)
T KOG1896|consen  787 PLGSEIVFKEPHLFLVVSDNEILIYKAFPQLS------------------------QGNLKVFFKKVPHNLNIRTDKPHF  842 (1366)
T ss_pred             ccchhhhccCCceEEEEeCceEEEEeeccccC------------------------ccchhhhhhhCCHhhcccccCCcc
Confidence            88877  7899999999999999999985111                        01124589999875422111    


Q ss_pred             -------------CCCCCCccceEEeeccCCceEEEEeCCCceEEEEe-CCceEEeeccCCCceEEEeeccCCCCCceEE
Q 000548          905 -------------TPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVF-RERLRVHPQLCDGSIVAFTVLHNVNCNHGFI  970 (1431)
Q Consensus       905 -------------~~~~~g~~~l~~f~~~~g~~~Vf~~g~rP~~i~~~-~~~l~~~pl~~~~~v~~~~~f~~~~~~~g~i  970 (1431)
                                   .+.+.-.++++.|++++|++|||+||++|+||+.. ++.+++||+..+++|.+|++||+.|||+||+
T Consensus       843 ~~~~~~~~~~e~~~~~~~~~~~m~~f~~i~ghsgvfv~Gs~P~~il~t~rg~lr~h~~~gngpv~sfapfhnvn~p~gfi  922 (1366)
T KOG1896|consen  843 LCKKREGGGAEEGASVSVIVQRMTYFEDIGGHSGVFVTGSKPYLILLTFRGVLRFHPVFGNGPVGSFAPFHNVNCPRGFI  922 (1366)
T ss_pred             cchhhccccccccccccceeeeEEeeccccCeeEEEEecCCceEEEEEcccccceeeeecCCcceeeeeeeccCCCcceE
Confidence                         11123346788999999999999999999999874 9999999999999999999999999999999


Q ss_pred             EEEecCeEEEEEcCCCCccCCCcceEEeeCCCcccEEEEecCCCeEEEEEeecccccccccccccccccccccccCCCCC
Q 000548          971 YVTSQGILKICQLPSGSTYDNYWPVQKIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLS 1050 (1431)
Q Consensus       971 ~~~~~~~L~I~~l~~~~~~d~~~~ir~i~L~~tprki~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~e~~~~~~~~~~~ 1050 (1431)
                      |++.++.|+||.++....||+.||+|+|||+.|||+++||++.++|+|+++.+  .++.   ...+|++.      +.++
T Consensus       923 yvd~~~~l~i~~lp~~~~Ydn~wPvkkIpl~~T~~~vvYh~e~~vy~v~t~~~--~~~~---~~~~d~~e------~~~~  991 (1366)
T KOG1896|consen  923 YVDRQGELVICVLPEALSYDNKWPVKKIPLRKTPHQVVYHYEKKVYAVITSTP--VPYE---RLGEDGEE------EVIS  991 (1366)
T ss_pred             EECCCceEEEEEcchhcccCCCCcccccccccchhheeeeccceEEEEEEecc--ceee---eccccccc------cccc
Confidence            99999999999999999999999999999999999999999999999998863  2221   11223321      2345


Q ss_pred             ccccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecC-CCCcceEEEEEeeeecCCCcccceeE
Q 000548         1051 SVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTT-TKENETLLAIGTAYVQGEDVAARGRV 1129 (1431)
Q Consensus      1051 ~~~~~~~~~~~~~~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~-~~~~~~~ivVGT~~~~~e~~~~~Gri 1129 (1431)
                      .++....|..++++|+|++|    .+|++++.|+|++||++++++.+.|..+. +++.++||+|||+++.|||.++|||+
T Consensus       992 ~de~~~~p~~~~f~i~LisP----~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~ 1067 (1366)
T KOG1896|consen  992 RDENVIHPEGEQFSIQLISP----ESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRI 1067 (1366)
T ss_pred             ccccccccccccceeEEecC----CccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccE
Confidence            56777888899999999999    49999999999999999999999998654 45579999999999999999999999


Q ss_pred             EEEEEee---cCCCC--CccEEEEEEEeecCceEEEccccCeEEEEeCCeEEEEEc-cCCeeeeeEeecCCCeeEEEEEE
Q 000548         1130 LLFSTGR---NADNP--QNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKW-TGTELNGIAFYDAPPLYVVSLNI 1203 (1431)
Q Consensus      1130 ~vf~i~~---~~~~~--~~~l~lv~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~~~-~~~~L~~~a~~~~~~~~i~~l~~ 1203 (1431)
                      ++|+|++   +|++|  +.|||+++++|++|+|.++|+++|+|+.|.|+||++|+| .+.+|.++||+|. |.|++++++
T Consensus      1068 hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l~r~~~ligVaFiD~-~~yv~s~~~ 1146 (1366)
T KOG1896|consen 1068 HIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRDSELIGVAFIDL-PLYVHSMKV 1146 (1366)
T ss_pred             EEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEccCcEEEEEEeccCCcceeeEEecc-ceeEEehhh
Confidence            9999987   77766  457999999999999999999999999999999999999 5678999999999 999999999


Q ss_pred             eCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCccCceEE
Q 000548         1204 VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLL 1283 (1431)
Q Consensus      1204 ~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~ 1283 (1431)
                      +||+|++||+|||++|++|++++.+|.+++||..++.|++++||+|+++|+|+++|+++||++|.|.|++++|++|+||.
T Consensus      1147 vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~~eS~~G~RLv 1226 (1366)
T KOG1896|consen 1147 VKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPENIESLSGQRLV 1226 (1366)
T ss_pred             hhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCCccccCcceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCcceeEEEEEeeecCCCCCCCCCCCCCCCCceEEE--EEcCCCcEEEEEeCChHhHHHHHHHHHHHHhcCCCC
Q 000548         1284 SRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALL--FGTLDGSIGCIAPLDELTFRRLQSLQKKLVDSVPHV 1361 (1431)
Q Consensus      1284 ~~~~fhlg~~vt~~~~~~~~~~~~~~~~~~~g~~~~~~~~il--~~T~~GsIg~l~pl~e~~~~~L~~Lq~~l~~~~~~~ 1361 (1431)
                      ++++||+|..|++|.+...... .+.     +   .+.+...  |||++|++|+++|++|+.||||..||++|...++|+
T Consensus      1227 ~radfhvg~~vs~m~~lp~~~~-~e~-----~---~~~~~~~~v~gtlDG~l~~~~Pl~e~~YRRL~~lQn~L~~~~~hv 1297 (1366)
T KOG1896|consen 1227 RRADFHVGAHVSTMFRLPCHQN-AEF-----G---SNSPMFYEVFGTLDGGLGHLVPLDEKTYRRLLMLQNALMDRLPHV 1297 (1366)
T ss_pred             eeeeeEeccceeeeEecccccc-chh-----c---cCCchhhhhhcccCCceeEEecCCHHHHHHHHHHHHHHHHhhhhh
Confidence            9999999999999998652221 110     1   1233444  899999999999999999999999999999999999


Q ss_pred             CCCCcccccccccCCCCCCCCCCCceeHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhccCCC
Q 000548         1362 AGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTGTTRSQILSNLNDLALGTSFL 1431 (1431)
Q Consensus      1362 ~Gl~~~~~R~~~~~~~~~~~~~~~~IDGDlie~fl~L~~~~q~~ia~~l~~~~~~i~~~l~~l~~~~~~~ 1431 (1431)
                      |||||++||..+...+ ...+.+++|||+||.+|..|+.++|.++|+++|+++.+|+++|-+|.+.++||
T Consensus      1298 ~GLNPr~yR~~~s~~~-~~n~~r~ilDg~ll~~f~yl~~~er~elA~kiGt~~~eIl~DLvel~~~~s~~ 1366 (1366)
T KOG1896|consen 1298 GGLNPRAYRLLDSSLQ-LSNSLRSILDGELLNRFSYLSMSEREELAHKIGTTRKEILDDLVELDRLTSSL 1366 (1366)
T ss_pred             cCCCHHHhhhccchhh-hcCCCcccchHhHHHHhhccchhhHHHHHHhcCCCHHHHHHHHHHHHHHhhcC
Confidence            9999999999876653 35789999999999999999999999999999999999999999999999886

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]	Back alignment and domain information

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]	Back alignment and domain information

>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]	Back alignment and domain information

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A	Back alignment and domain information

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit	Back alignment and domain information

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]	Back alignment and domain information

>KOG2048 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PRK11028 6-phosphogluconolactonase; Provisional	Back alignment and domain information

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Back alignment and domain information

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit	Back alignment and domain information

>KOG1274 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1273 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Back alignment and domain information

>PLN00181 protein SPA1-RELATED; Provisional	Back alignment and domain information

>KOG1539 consensus WD repeat protein [General function prediction only]	Back alignment and domain information

>PRK11028 6-phosphogluconolactonase; Provisional	Back alignment and domain information

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1539 consensus WD repeat protein [General function prediction only]	Back alignment and domain information

>KOG2055 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]	Back alignment and domain information

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3	Back alignment and domain information

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals	Back alignment and domain information

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>PLN00181 protein SPA1-RELATED; Provisional	Back alignment and domain information

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]	Back alignment and domain information

>KOG0646 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG2321 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>KOG0282 consensus mRNA splicing factor [Function unknown]	Back alignment and domain information

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG1273 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PTZ00420 coronin; Provisional	Back alignment and domain information

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]	Back alignment and domain information

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]	Back alignment and domain information

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]	Back alignment and domain information

>KOG2055 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals	Back alignment and domain information

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region	Back alignment and domain information

>PF14727 PHTB1_N: PTHB1 N-terminus	Back alignment and domain information

>KOG2096 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]	Back alignment and domain information

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]	Back alignment and domain information

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]	Back alignment and domain information

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]	Back alignment and domain information

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]	Back alignment and domain information

>KOG0282 consensus mRNA splicing factor [Function unknown]	Back alignment and domain information

>PTZ00420 coronin; Provisional	Back alignment and domain information

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]	Back alignment and domain information

>PF14727 PHTB1_N: PTHB1 N-terminus	Back alignment and domain information

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1431
3i7h_A		1143	Crystal Structure Of Ddb1 In Complex With The H-Box		3e-15
3ei4_A		1158	Structure Of The Hsddb1-Hsddb2 Complex Length = 115		3e-15
3e0c_A		1140	Crystal Structure Of Dna Damage-Binding Protein 1(D		4e-15
4e54_A		1150	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		4e-15
2b5l_A		1140	Crystal Structure Of Ddb1 In Complex With Simian Vi		4e-15
4a08_A		1159	Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Dup		4e-15
4a0b_A		1159	Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup		4e-15
4a0a_A		1159	Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup		4e-15
4a0l_A		1144	Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp		4e-15
4a11_A		1159	Structure Of The Hsddb1-Hscsa Complex Length = 1159		4e-15
3ei1_A		1158	Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Pho		4e-15

>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of Hbx Length = 1143