Citrus Sinensis ID: 000550

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430-
MKSSSDAVSSSSAATSSTTTTTTTTTTTTGASSTSPASLSDQSQPVTSSEKPQSSSFPAAATGGVEDLSLGTRDGSGGAQESVAVDRRGEHSAVCRWTVHNFPRIRARALWSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLSDESKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNDAVLITADILILNESVSFMRDNNELQSPSMVSSSVVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGQEYLSMCLESKDMEKTVVSDRSCWCLFRMSVLNQSPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSFHVIKEISSFSKNGGLIGWRSGNGARKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVMDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSIMQDFTDQDTESTNAGSQMDKIGKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDLDKNFWVRYRMAVVNQKNPTKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLMRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSDDSEGISGDEEDIVRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKAKRLLLPTKLSGSDGKKVAKTDESSPSVMNLLMGVKVLQQAIIDLLLDIMVECCQPSDGNYYGDSSDANSKPPLDANGGARPLEADRENGASESAQFPLFERLDSGADDNSTTSAVQSSDLSGIDIAEKALPGQPIFPPETSAGGSLESASFRSKTKWPEQSAELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKISLVLDKAPKHLQPDLVALVPKLVEHSEHPLAADALIERLQKSDAEPALRMPVFVALSQLDFGSEVWERILLKSLELLTDSNDEPLAVTIDFIFKAASQCQHLPEAVRSVRVRLKNLGAEVSPCVLDFLSKTVNSWGDVAETILRDIDCDDDFGDNCSTMPSGLFLFGENGPTSDSLHVMDEQAFRATRHFSDIYILIEMLSIPCIAVEAAQTFERAVARGTIVAQSIALVLERRLAQRLNFNPGFVAENFQHTDVVVEGEQLIVQRDDFTCVLGLAETLALSRDIRVREFVKILYTILLKWYPDESYRGRMLKRLVDRATSTTESSRGVDLDLEILVILVCEEQEIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKVLV
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccEEEcccEEEcccEEEEEEEEccccccccccEEEEEEEcccccccccccEEEEEEEEEEEEccccccEEEEcccEEcccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEccccHHHccccccccccccEEEccccEEEEEEccccccccEEEEEEEEcccccccccccEEEEEEEEEEEEcccccccEEEcccEEccccccccccccccccccccccccccccccccccccEEEEEEEEEEEccccccccccccccccccccccccccccEEEEEEEcccHHHHHHHcccccccEEccccEEcccccEEEEEEccccccccccEEEEEEEccccccccccEEEEEEEEEEEEcccccccEEEEccEEccccccccccccccccccccccccccEEccEEEEEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEcccHHHHcccEEEEEEEEEcccEEEEEEEcccccEEEEEEcccccccccccEEEEEEEEEEEEcccccEEEEEEEcccccccccccccEEEcccccccccccccccEEEEEEEEEEEcccccccccEEcccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccEEHHHHHHcHHHHHHHHHHccEEccccHHHHHHccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccccccccHHHHcccccccccccHHHHHHHHHHcccccccccccHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccEEccccccccccHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccEEEEEHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcc
cccccccccccccccHHHHHHccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccHcccccccccEEEEcccEEEEEEEEcccccccccEEEEEEEEcccccccccccEEEEEEEEEEEEccccccEEEEccEEEEccccccccccccccHHHcccccccEEEcccEEEEEEEEEEEEccccEEEcccccccccccccccccccccccccccEEEEEccHHHHHHHcccccccccEEEEccEEEEEEEEEcccccccEEEEEEEEEccccccccccEEEEEEEEEEEEccccccEEEEccEEEEcccccccccccccccccccHHHcccccccEEEccEEEEEEEEEEEEccccEccccccccccccccccccccccccEEEEEccHHHHHHHHccccccccEccccEEEEcccEEEEEEEEccccccccEEEEEEEEccccccccccEEEEEEEEEEEEccccccEEEEcEEEEEcccccccccccEEEHHHcccccccEEEccEEEEEEEEEEEEEcccEcccccccccccccccccccccccccEEEEEEcHHHccHHcccccEEccEEEEccEEEEEEEEccccEEEEEEEEccccccccccEEEEEEEEEEEEccccccEEEEEEEEccccccccccccEEHHHHccccccEEEccEEEEEEEEEEEccccccccccEEccccccccccccHHHHccccccccccccHHHHHHHHHHHcccEEEcccccccccccHHHHHHHHHHHHHHHHcccEEEcccHHHHHEEccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccHHccHHHHHHcHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEcccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcc
mksssdavssssaatssttttttttttttgasstspaslsdqsqpvtssekpqsssfpaaatggvedlslgtrdgsggaqesvavdrrgehsaVCRWTVHNFPRIRARALWSKYFEvggydcrllvypkgdsqalpgyISIYLqimdprgtssskwdcfASYRLAIVnlsdesktihrdswhrfsskkkshgwcdftpsstvfdsklgylfnndavLITADILILNESVsfmrdnnelqspsmvsssvvagpvsdvlsgkftwKVHNFSLFKEMIKTqkimspvfpagecnLRISVYQSSVNGQEYLSMCLESKDMEKTVVSDRSCWCLFRMsvlnqspgsnhmhrdsygrfaadnksgdntslgwndYMKMAdfvghdsgflvddtavfSTSFHVIKEISSfsknggligwrsgngarksdghmgkfTWRIENFTRLKDLLKKRKitglciksrrfqignrdcrlivyprgqsqppchlSVFLEVmdsrntssdwscfVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLtslfdqdsgflvqDTVVFSAEVLILKETSimqdftdqdtestnagsqmdkigkrssfTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLesdqsvgsdldkNFWVRYRMAVVnqknptktvWKESSICTKTWNNSVLQFMKVSDMLEADAGFLMRDTVVFVCEIldccpwfefsdlevlaseddqdalttdpdelidsddsegisgdeEDIVRNLLSRAgfhltygdnpsqpqvTLREKLLMDAGAIAGFLTGLRVylddpakakrlllptklsgsdgkkvaktdesspSVMNLLMGVKVLQQAIIDLLLDIMVEccqpsdgnyygdssdanskppldanggarpleadrengasesaqfplferldsgaddnsttsavqssdlsgidiaekalpgqpifppetsaggslesasfrsktkwpeQSAELLGLIVNSLRaldgavpqgcpeprrrpqsaQKISLVLdkapkhlqpdLVALVPKlvehsehplAADALIERLqksdaepalrmPVFVALSQLDFGSEVWERILLKSLElltdsndeplaVTIDFIFKAASQCQHLPEAVRSVRVRLKnlgaevspcVLDFLSKTVNSWGDVAETILRdidcdddfgdncstmpsglflfgengptsdslhvMDEQAFRATRHFSDIYILIEMLSIPCIAVEAAQTFERAVARGTIVAQSIALVLERRLAQRlnfnpgfvaenfqhtdvvvegeqlivqrddfTCVLGLAETLALSRDIRVREFVKILYTILLKwypdesyrgRMLKRLVDRatsttessrgvdldLEILVILVCEEQEIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKVLV
mksssdavssssaatssttttttttttttgasstspaslsdqsqpvtssekpqsssfpaaATGGVEDLSLGTRDGSGGAQESvavdrrgehsavcrwtvhnfprIRARALWSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLSDESKTIHRDSWHrfsskkkshgwcDFTPSSTVFDSKLGYLFNNDAVLITADILILNESVSFMRDNNELQSPSMVSSSVVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGQEYLSMCLESKDMEKTVVSDRSCWCLFRMSVlnqspgsnHMHRDSYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSFHVIKEIssfsknggligWRSGngarksdghmgkftwrienFTRLKDLLKkrkitglciksrrfqignrDCRLIVYPRGQSQPPCHLSVFLEVMDSRNTSSDWSCFVSHRLSvvnqkmeeksvtkesqnryskaakdwgWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETsimqdftdqdtestnagsqmdkigkrssftwKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLesdqsvgsdLDKNFWVRYRMAvvnqknptktvwkessictKTWNNSVLQFMKVSDMLEADAGFLMRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDalttdpdelidsddsegisgdEEDIVRNLLSRAGFHltygdnpsqPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKAKRLllptklsgsdgkkvaktdesspsvMNLLMGVKVLQQAIIDLLLDIMVECCQPSDGNYYGDSSDANSKPPLDANGGARPLEADRENGASESAQFPLFERLDSGADDNSTTSAVQSSDLSGIDIAEKALPGQPIFPPETSAGGSLESASFRSKTKWPEQSAELLGLIVNSLRALDGAVPqgcpeprrrpqSAQKISLVLDKAPKHLQPDLVALVPKLVEHSEHPLAADALIERLQKSDAEPALRMPVFVALSQLDFGSEVWERILLKSLELLTDSNDEPLAVTIDFIFKAASQCQHLPEAVRSVRVRLKNLGAEVSPCVLDFLSKTVNSWGDVAETILRDIDCDDDFGDNCSTMPSGLFLFGENGPTSDSLHVMDEQAFRATRHFSDIYILIEMLSIPCIAVEAAQTFERAVARGTIVAQSIALVLERRLAQRLNFNPGFVAENFQHTDVVVEGEQLIVQRDDFTCVLGLAEtlalsrdirvREFVKILYTILLkwypdesyrgrMLKRLVDratsttessrgvdldlEILVILVCEEQEIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEIsnmvrekavfsqklaeseaagnrlkvlv
MKsssdavssssaatssttttttttttttgasstspaslsDQSQPVTSSEKPQSSSFPAAATGGVEDLSLGTRDGSGGAQESVAVDRRGEHSAVCRWTVHNFPRIRARALWSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLSDESKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNDAVLITADILILNESVSFMRDNNELQSPSMVSSSVVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGQEYLSMCLESKDMEKTVVSDRSCWCLFRMSVLNQSPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSFHVIKEISSFSKNGGLIGWRSGNGARKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVMDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSIMQDFTDQDTESTNAGSQMDKIGKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDLDKNFWVRYRMAVVNQKNPTKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLMRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELidsddsegisgdeediVRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKAKRLLLPTKLSGSDGKKVAKTDESSPSVMNLLMGVKVLQQAiidllldiMVECCQPSDGNYYGDSSDANSKPPLDANGGARPLEADRENGASESAQFPLFERLDSGADDNSTTSAVQSSDLSGIDIAEKALPGQPIFPPETSAGGSLESASFRSKTKWPEQSAELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKISLVLDKAPKHLQPDLVALVPKLVEHSEHPLAADALIERLQKSDAEPALRMPVFVALSQLDFGSEVWERILLKSLELLTDSNDEPLAVTIDFIFKAASQCQHLPEAVRSVRVRLKNLGAEVSPCVLDFLSKTVNSWGDVAETILRdidcdddfgdNCSTMPSGLFLFGENGPTSDSLHVMDEQAFRATRHFSDIYILIEMLSIPCIAVEAAQTFERAVARGTIVAQSIALVLERRLAQRLNFNPGFVAENFQHTDVVVEGEQLIVQRDDFTCVLGLAETLALSRDIRVREFVKILYTILLKWYPDESYRGRMLKRLVDRATSTTESSRGvdldleilvilvceeqeiiRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKVLV
******************************************************************************************HSAVCRWTVHNFPRIRARALWSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLSDESKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNDAVLITADILILNESVSFM***************VVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGQEYLSMCLESKDMEKTVVSDRSCWCLFRMSVL***************************SLGWNDYMKMADFVGHDSGFLVDDTAVFSTSFHVIKEISSFSKNGGLIGWRSGNGARKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVMDSRNTSSDWSCFVSHRLSVV*******************AAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSIMQ***********************SFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDLDKNFWVRYRMAVVNQKNPTKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLMRDTVVFVCEILDCCPWFEFSDLEVLA******************************IVRNLLSRAGFHLTYGD*****QVTLREKLLMDAGAIAGFLTGLRVYLDDPAKAKRLLL*********************VMNLLMGVKVLQQAIIDLLLDIMVECCQPSDG********************************************************************************************************ELLGLIVNSLRALD******************************LQPDLVALVPKLVEHSEHPLAADALIERL******PALRMPVFVALSQLDFGSEVWERILLKSLELLTDSNDEPLAVTIDFIFKAASQCQHLPEAVRSVRVRLKNLGAEVSPCVLDFLSKTVNSWGDVAETILRDIDCDDDFGDNCSTMPSGLFLFGENGPTSDSLHVMDEQAFRATRHFSDIYILIEMLSIPCIAVEAAQTFERAVARGTIVAQSIALVLERRLAQRLNFNPGFVAENFQHTDVVVEGEQLIVQRDDFTCVLGLAETLALSRDIRVREFVKILYTILLKWYPDESYRGRMLKRLVDRA*******RGVDLDLEILVILVCEEQEIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRD**********************************
******************************************************************************************HSAVCRWTVHNFPRIRARALWSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLSDESKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNDAVLITADILILNESVSFMRDNNELQSPSMVSSSVVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGQEYLSMCLESKDMEKTVVSDRSCWCLFRMSVLNQSPG***M*RDSYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSFHVIKEISSFSKNGGLIGWRSGNGARKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVMDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSIMQDFTDQDTESTNAGSQMDKIGKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDLDKNFWVRYRMAVVNQKNPTKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLMRDTVVFVCEILDCCPWFEFSDL***********************************VRNLLSRAGFHL**********VTLREKLLMDAGAIAGFLTGLRVYLDDPAKAKRLLL********************SVMNLLMGVKVLQQAIIDLLLDIMVE**************************************************************************************************************AELLGLIVNSLRALDGAVPQ**************ISLVLDKAPKHLQPDLVALVPKLVEHSEHPLAADALIERLQKSDAEPALRMPVFVALSQLDFGSEVWERILLKSLELLTDSNDEPLAVTIDFIFKAASQCQHLPEAVRSVRVRLKNLGAEVSPCVLDFLSKTVNSWGDVAETILRDIDCDDDFGDNCSTMPSGLFLFGENGPTSD*LHVMDEQAFRATRHFSDIYILIEMLSIPCIAVEAAQTFERAVARGTIVAQSIALVLERRLA******************************DDFTCVLGLAETLALSRDIRVREFVKILYTILLKWYPDESYRGRMLKRLVDRATSTTESSRGVDLDLEILVILVCEEQEIIRPVLSMLREVAELANVDRAALWHQLCASEDE*************************LAESEAAGNRLKVLV
************************************************************ATGGVEDLSLGTRDGSGGAQESVAVDRRGEHSAVCRWTVHNFPRIRARALWSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLSDESKTI***************GWCDFTPSSTVFDSKLGYLFNNDAVLITADILILNESVSFMRDNNEL**********VAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGQEYLSMCLESKDMEKTVVSDRSCWCLFRMSVLNQSPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSFHVIKEISSFSKNGGLIGWRSGNGARKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVMDSRNTSSDWSCFVSHRLSVVNQK******************KDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSIMQDFTDQ************KIGKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDLDKNFWVRYRMAVVNQKNPTKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLMRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSDDSEGISGDEEDIVRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKAKRLLLPTKLS*************SPSVMNLLMGVKVLQQAIIDLLLDIMVECCQPSDGNYYGDSSDANSKPPLDANGGARPLEADRENGASESAQFPLFERLDSG*************DLSGIDIAEKALPGQPIFPPETS*****************EQSAELLGLIVNSLRALDGAVP*************QKISLVLDKAPKHLQPDLVALVPKLVEHSEHPLAADALIERLQKSDAEPALRMPVFVALSQLDFGSEVWERILLKSLELLTDSNDEPLAVTIDFIFKAASQCQHLPEAVRSVRVRLKNLGAEVSPCVLDFLSKTVNSWGDVAETILRDIDCDDDFGDNCSTMPSGLFLFGENGPTSDSLHVMDEQAFRATRHFSDIYILIEMLSIPCIAVEAAQTFERAVARGTIVAQSIALVLERRLAQRLNFNPGFVAENFQHTDVVVEGEQLIVQRDDFTCVLGLAETLALSRDIRVREFVKILYTILLKWYPDESYRGRMLKRLV**********RGVDLDLEILVILVCEEQEIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAA********
*****************************************************************************************EHSAVCRWTVHNFPRIRARALWSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLSDESKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNDAVLITADILILNESVSFMRDNNELQSPSMVSSSVVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGQEYLSMCLESKDMEKTVVSDRSCWCLFRMSVLNQSPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSFHVIKEISSFSK***************SDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVMDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSIMQDF***************KIGKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDLDKNFWVRYRMAVVNQKNPTKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLMRDTVVFVCEILDCCPWFEFSDLEVLAS******LTTD***LID**DSEGISGDEEDIVRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKAKRLLLPTKLSG************SPSVMNLLMGVKVLQQAIIDLLLDIMVECCQPS*********************************************************************A*******PI*********************WPEQSAELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKISLVLDKAPKHLQPDLVALVPKLVEHSEHPLAADALIERLQKSDAEPALRMPVFVALSQLDFGSEVWERILLKSLELLTDSNDEPLAVTIDFIFKAASQCQHLPEAVRSVRVRLKNLGAEVSPCVLDFLSKTVNSWGDVAETILRDIDCDDDFGDNCSTMPSGLFLFGENGPTSDSLHVMDEQAFRATRHFSDIYILIEMLSIPCIAVEAAQTFERAVARGTIVAQSIALVLERRLAQRLNFNP******************LIVQRDDFTCVLGLAETLALSRDIRVREFVKILYTILLKWYPDESYRGRMLKRLVDRATSTTESSRGVDLDLEILVILVCEEQEIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKVL*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKSSSDAVSSSSAATSSTTTTTTTTTTTTGASSTSPASLSDQSQPVTSSEKPQSSSFPAAATGGVEDLSLGTRDGSGGAQESVAVDRRGEHSAVCRWTVHNFPRIRARALWSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLSDESKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNDAVLITADILILNESVSFMRDNNELQSPSMVSSSVVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGQEYLSMCLESKDMEKTVVSDRSCWCLFRMSVLNQSPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSFHVIKEISSFSKNGGLIGWRSGNGARKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVMDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSIMQDFTDQDTESTNAGSQMDKIGKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDLDKNFWVRYRMAVVNQKNPTKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLMRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSDDSEGISGDEEDIVRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKAKRLLLPTKLSGSDGKKVAKTDESSPSVMNLLMGVKVLQQAIIDLLLDIMVECCQPSDGNYYGDSSDANSKPPLDANGGARPLEADRENGASESAQFPLFERLDSGADDNSTTSAVQSSDLSGIDIAEKALPGQPIFPPETSAGGSLESASFRSKTKWPEQSAELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKISLVLDKAPKHLQPDLVALVPKLVEHSEHPLAADALIERLQKSDAEPALRMPVFVALSQLDFGSEVWERILLKSLELLTDSNDEPLAVTIDFIFKAASQCQHLPEAVRSVRVRLKNLGAEVSPCVLDFLSKTVNSWGDVAETILRDIDCDDDFGDNCSTMPSGLFLFGENGPTSDSLHVMDEQAFRATRHFSDIYILIEMLSIPCIAVEAAQTFERAVARGTIVAQSIALVLERRLAQRLNFNPGFVAENFQHTDVVVEGEQLIVQRDDFTCVLGLAETLALSRDIRVREFVKILYTILLKWYPDESYRGRMLKRLVDRATSTTESSRGVDLDLEILVILVCEEQEIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKVLV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1431 2.2.26 [Sep-21-2011]
Q84WU21115 Ubiquitin carboxyl-termin no no 0.089 0.114 0.366 9e-17
Q9FPT11116 Ubiquitin carboxyl-termin no no 0.089 0.114 0.359 3e-16
Q8RY181055 MATH domain-containing pr no no 0.085 0.115 0.315 3e-09
Q8T1261304 Probable inactive serine/ no no 0.190 0.209 0.217 2e-08
Q6U7I11101 Ubiquitin carboxyl-termin yes no 0.086 0.112 0.259 2e-06
P11467460 RING finger protein DG17 no no 0.087 0.271 0.284 7e-06
Q930091102 Ubiquitin carboxyl-termin yes no 0.086 0.112 0.251 9e-06
Q098791108 Probable ubiquitin carbox yes no 0.099 0.129 0.260 1e-05
Q4VSI41103 Ubiquitin carboxyl-termin yes no 0.086 0.112 0.244 3e-05
Q6A4J81103 Ubiquitin carboxyl-termin yes no 0.086 0.112 0.244 3e-05
>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1 Back     alignment and function desciption
 Score = 90.5 bits (223), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 11/139 (7%)

Query: 427 KFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEV 486
           KFTW I  FTRL      RK       S  F +G    R++++P+G +    HLS++L+V
Sbjct: 55  KFTWTIPMFTRLN----TRKHY-----SDVFVVGGYKWRILIFPKGNNV--DHLSMYLDV 103

Query: 487 MDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQD 546
            D+ N    WS +    L+VVNQ     S+ KE+Q++++    DWG+  F+ L+ L++  
Sbjct: 104 ADAANLPYGWSRYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSELYEPT 163

Query: 547 SGFLVQDTVVFSAEVLILK 565
            G+LV DTV+  AEV + K
Sbjct: 164 RGYLVNDTVLIEAEVAVRK 182
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2 Back     alignment and function description
>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1 Back     alignment and function description
>sp|Q8T126|FNKC_DICDI Probable inactive serine/threonine-protein kinase fnkC OS=Dictyostelium discoideum GN=fnkC PE=3 SV=1 Back     alignment and function description
>sp|Q6U7I1|UBP7_CHICK Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus gallus GN=USP7 PE=2 SV=1 Back     alignment and function description
>sp|P11467|DG17_DICDI RING finger protein DG17 OS=Dictyostelium discoideum GN=zfaA PE=2 SV=2 Back     alignment and function description
>sp|Q93009|UBP7_HUMAN Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens GN=USP7 PE=1 SV=2 Back     alignment and function description
>sp|Q09879|UBP5_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp5 PE=3 SV=3 Back     alignment and function description
>sp|Q4VSI4|UBP7_RAT Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus norvegicus GN=Usp7 PE=1 SV=1 Back     alignment and function description
>sp|Q6A4J8|UBP7_MOUSE Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus musculus GN=Usp7 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1431
359475831 1683 PREDICTED: uncharacterized protein LOC10 0.962 0.818 0.860 0.0
356518240 1679 PREDICTED: uncharacterized protein LOC10 0.951 0.811 0.843 0.0
109676322 2224 unknown [Populus trichocarpa] 0.946 0.608 0.842 0.0
109676324 1649 unknown [Populus trichocarpa] 0.924 0.802 0.828 0.0
357466147 1714 CGS1 mRNA stability [Medicago truncatula 0.963 0.804 0.795 0.0
449437160 1686 PREDICTED: uncharacterized protein LOC10 0.959 0.814 0.809 0.0
145360308 1673 TRAF-like protein [Arabidopsis thaliana] 0.947 0.810 0.738 0.0
4567245 1660 unknown protein [Arabidopsis thaliana] 0.940 0.810 0.731 0.0
168034797 1677 predicted protein [Physcomitrella patens 0.928 0.791 0.648 0.0
356509910 1622 PREDICTED: uncharacterized protein LOC10 0.651 0.575 0.880 0.0
>gi|359475831|ref|XP_002282789.2| PREDICTED: uncharacterized protein LOC100259525 [Vitis vinifera] gi|296082057|emb|CBI21062.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 2466 bits (6391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1200/1394 (86%), Positives = 1292/1394 (92%), Gaps = 16/1394 (1%)

Query: 41   DQSQPVTSSEKPQSSSFPAAATGGVEDLSLG-TRDGSGGAQESVAVDRRGEHSAVCRWTV 99
            +QSQP      P ++  P+ + G  +D SL  +RDG G  QESV VDRR + SAVC+WTV
Sbjct: 27   EQSQP------PIATPSPSPSMG--DDPSLAASRDGHG--QESVTVDRRTDFSAVCKWTV 76

Query: 100  HNFPRIRARALWSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCF 159
            HNFP+I+ARALWSKYFEVGG+DCRLL+YPKGDSQALPGYIS+YLQIMDPRG+SSSKWDCF
Sbjct: 77   HNFPKIKARALWSKYFEVGGFDCRLLIYPKGDSQALPGYISVYLQIMDPRGSSSSKWDCF 136

Query: 160  ASYRLAIVNLSDESKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNDAVLIT 219
            ASYRLAIVN +D+SK+IHRDSWHRFSSKKKSHGWCDFTPS+T+FDSK GYLFNND+VLIT
Sbjct: 137  ASYRLAIVNHADDSKSIHRDSWHRFSSKKKSHGWCDFTPSTTLFDSKSGYLFNNDSVLIT 196

Query: 220  ADILILNESVSFMRDNNELQSPSMVSSSVVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQK 279
            ADILILNESV+F RDNNELQS S ++S VVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQK
Sbjct: 197  ADILILNESVNFTRDNNELQSASSMASMVVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQK 256

Query: 280  IMSPVFPAGECNLRISVYQSSVNGQEYLSMCLESKDMEKTVVSDRSCWCLFRMSVLNQSP 339
            IMSPVFPAGECNLRISVYQSSVNG EYLSMCLESKD EK VVSDRSCWCLFRMSVLNQ P
Sbjct: 257  IMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDTEKAVVSDRSCWCLFRMSVLNQKP 316

Query: 340  GSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSFHVIKE 399
            G NHMHRDSYGRFAADNKSGDNTSLGWNDYMKM+DF+G DSGFLVDDTAVFSTSFHVIKE
Sbjct: 317  GLNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGSDSGFLVDDTAVFSTSFHVIKE 376

Query: 400  ISSFSKNGGLIGWRSGNGA-RKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQ 458
             SSFSKNGGLIG R G+G  RKSDGH+GKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQ
Sbjct: 377  FSSFSKNGGLIGVRGGSGGTRKSDGHLGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQ 436

Query: 459  IGNRDCRLIVYPRGQSQPPCHLSVFLEVMDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTK 518
            IGNRDCRLIVYPRGQSQPPCHLSVFLEV DSRNTSSDWSCFVSHRLSVVNQ+ME+KSVTK
Sbjct: 437  IGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQRMEDKSVTK 496

Query: 519  ESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSIMQDFTDQDT 578
            ESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETS M D TDQD+
Sbjct: 497  ESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSTMLDLTDQDS 556

Query: 579  ESTNAGSQMDKIGKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTI 638
            ES+N+GSQ+DKIGKRSSFTW+VENF+SFKEIMETRKIFSKFFQAGGCELRIGVYESFDTI
Sbjct: 557  ESSNSGSQIDKIGKRSSFTWRVENFMSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTI 616

Query: 639  CIYLESDQSVGSDLDKNFWVRYRMAVVNQKNPTKTVWKESSICTKTWNNSVLQFMKVSDM 698
            CIYLESDQSVGSD DKNFWVRYRMAVVNQKNP KTVWKESSICTKTWNNSVLQFMKVSDM
Sbjct: 617  CIYLESDQSVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDM 676

Query: 699  LEADAGFLMRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSDDSEGIS 758
            LEADAGFL+RDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDS+DSEGIS
Sbjct: 677  LEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGIS 736

Query: 759  GDEEDIVRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKAK 818
            GDEEDI RNLLSRAGFHLTYGDNP+QPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAK K
Sbjct: 737  GDEEDIFRNLLSRAGFHLTYGDNPAQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVK 796

Query: 819  RLLLPTKLSGS-DGKKVAKTDESSPSVMNLLMGVKVLQQAIIDLLLDIMVECCQPSDGNY 877
            RLLLPTKLSGS DGKKV KTDESSPS+MNLLMGVKVLQQAIIDLLLDIMVECCQPS+GN 
Sbjct: 797  RLLLPTKLSGSNDGKKVTKTDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGNS 856

Query: 878  YGDSSDANSKPPLDANGGARPLEADRENGASESAQFPLFERLDSGADDNSTTSAVQSSDL 937
              DSSD NSK     +G   PLE+DRENGA+ESA+FP++ERLDSG  +++  SAVQSSD+
Sbjct: 857  NDDSSDENSKLSPGGSGAVSPLESDRENGATESAEFPVYERLDSGVYESTNVSAVQSSDM 916

Query: 938  SGIDIAEKALPGQPIFPPETSAGGSLESASFRSKTKWPEQSAELLGLIVNSLRALDGAVP 997
            +G  + EKA+PGQPI PPETSAGGS+E+AS RSKTKWPEQS ELLGLIVNSLRALDGAVP
Sbjct: 917  NGTVVPEKAVPGQPISPPETSAGGSIENASLRSKTKWPEQSEELLGLIVNSLRALDGAVP 976

Query: 998  QGCPEPRRRPQSAQKISLVLDKAPKHLQPDLVALVPKLVEHSEHPLAADALIERLQKSDA 1057
            QGCPEPRRRPQSAQKI+LVLDKAPKHLQPDLVALVPKLVEHSEHPLAA AL++RLQK DA
Sbjct: 977  QGCPEPRRRPQSAQKIALVLDKAPKHLQPDLVALVPKLVEHSEHPLAACALLDRLQKPDA 1036

Query: 1058 EPALRMPVFVALSQLDFGSEVWERILLKSLELLTDSNDEPLAVTIDFIFKAASQCQHLPE 1117
            EPALR+PVF ALSQL+ GSEVWERIL +S ELL+DSNDEPLA TI+FIFKAASQCQHLPE
Sbjct: 1037 EPALRIPVFGALSQLECGSEVWERILFQSFELLSDSNDEPLAATINFIFKAASQCQHLPE 1096

Query: 1118 AVRSVRVRLKNLGAEVSPCVLDFLSKTVNSWGDVAETILRDIDCDDDFGDNCSTMPSGLF 1177
            AVRS+RV+LK+LGAEVSPCVLDFL+KTVNSWGDVAETILRDIDCDDDFGDNCST+P GLF
Sbjct: 1097 AVRSIRVKLKHLGAEVSPCVLDFLNKTVNSWGDVAETILRDIDCDDDFGDNCSTIPCGLF 1156

Query: 1178 LFGENGPTSDSLHVMDEQAFRATRHFSDIYILIEMLSIPCIAVEAAQTFERAVARGTIVA 1237
            LFGENGPTS+ LH +DEQAF ATRHFSDIY+LIEMLSIPC+AVEA+QTFERAVARG  VA
Sbjct: 1157 LFGENGPTSERLHAIDEQAFCATRHFSDIYLLIEMLSIPCLAVEASQTFERAVARGAFVA 1216

Query: 1238 QSIALVLERRLAQRLNFNPGFVAENFQHTDVVVEG---EQLIVQRDDFTCVLGLAETLAL 1294
            QS+A+VLE RLAQRLNFN  FVAE+FQHTDVVVEG   EQL  QRDDF+ VLGLAETLAL
Sbjct: 1217 QSVAMVLESRLAQRLNFNSRFVAESFQHTDVVVEGETNEQLRAQRDDFSSVLGLAETLAL 1276

Query: 1295 SRDIRVREFVKILYTILLKWYPDESYRGRMLKRLVDRATSTTESSRGVDLDLEILVILVC 1354
            SRD RV+ FVK+LYTIL KWY DESYRGRMLKRLVDRATSTT+SSR +DL+LEILVILVC
Sbjct: 1277 SRDPRVKGFVKVLYTILFKWYADESYRGRMLKRLVDRATSTTDSSREIDLELEILVILVC 1336

Query: 1355 EEQEIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFS 1414
            EEQEI+RPVLSM+REVAELANVDRAALWHQLC SEDEIIR+R+ERKAEISN+V+EKA+ S
Sbjct: 1337 EEQEIVRPVLSMMREVAELANVDRAALWHQLCTSEDEIIRMREERKAEISNLVKEKAIIS 1396

Query: 1415 QKLAESEAAGNRLK 1428
            Q+L+ESEA  NRLK
Sbjct: 1397 QRLSESEATSNRLK 1410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356518240|ref|XP_003527787.1| PREDICTED: uncharacterized protein LOC100788511 [Glycine max] Back     alignment and taxonomy information
>gi|109676322|gb|ABG37643.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|109676324|gb|ABG37644.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357466147|ref|XP_003603358.1| CGS1 mRNA stability [Medicago truncatula] gi|355492406|gb|AES73609.1| CGS1 mRNA stability [Medicago truncatula] Back     alignment and taxonomy information
>gi|449437160|ref|XP_004136360.1| PREDICTED: uncharacterized protein LOC101209841 [Cucumis sativus] gi|449516864|ref|XP_004165466.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101209841 [Cucumis sativus] Back     alignment and taxonomy information
>gi|145360308|ref|NP_180104.3| TRAF-like protein [Arabidopsis thaliana] gi|113208238|dbj|BAF03523.1| CGS1 mRNA stability 1 [Arabidopsis thaliana] gi|330252594|gb|AEC07688.1| TRAF-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4567245|gb|AAD23659.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|168034797|ref|XP_001769898.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678804|gb|EDQ65258.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information
>gi|356509910|ref|XP_003523685.1| PREDICTED: uncharacterized protein LOC100780104 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1431
TAIR|locus:2059551 1673 AT2G25320 [Arabidopsis thalian 0.962 0.823 0.706 0.0
TAIR|locus:2059536693 AT2G25330 "AT2G25330" [Arabido 0.348 0.718 0.756 1.4e-208
TAIR|locus:2089045309 AT3G17380 "AT3G17380" [Arabido 0.192 0.889 0.227 1.3e-12
TAIR|locus:2085445330 AT3G58210 "AT3G58210" [Arabido 0.107 0.466 0.329 3.5e-15
TAIR|locus:2098318370 AT3G28220 "AT3G28220" [Arabido 0.171 0.664 0.228 4e-06
TAIR|locus:2085435282 AT3G58290 "AT3G58290" [Arabido 0.127 0.648 0.306 1.1e-13
TAIR|locus:21441181116 UBP12 "ubiquitin-specific prot 0.089 0.114 0.359 1.2e-13
TAIR|locus:2179744351 AT5G26260 "AT5G26260" [Arabido 0.174 0.712 0.223 3.2e-13
TAIR|locus:20815011115 UBP13 "ubiquitin-specific prot 0.089 0.114 0.366 8.8e-13
TAIR|locus:2118465297 AT4G09770 "AT4G09770" [Arabido 0.177 0.855 0.206 3e-07
TAIR|locus:2059551 AT2G25320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 5030 (1775.7 bits), Expect = 0., Sum P(2) = 0.
 Identities = 986/1395 (70%), Positives = 1134/1395 (81%)

Query:    41 DQSQPV---TSSEKPQSSSFPAAATGGVEDLSLGT-RDGSGGAQESVAVDRRGEHSAVCR 96
             DQS P    +SSEKP SSS  + A    EDL +G+ RDGSGGAQE VAVDR GE+SA+CR
Sbjct:    19 DQSHPSVSSSSSEKPLSSSSISPA----EDLQVGSSRDGSGGAQEIVAVDRPGEYSALCR 74

Query:    97 WTVHNFPRIRARALWSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKW 156
             WTV +F R++A+ALWSKYF+VGGYDCRLLVYP+GDSQALPGYISIYLQIMDPRGT+SS+W
Sbjct:    75 WTVESFTRVKAKALWSKYFDVGGYDCRLLVYPRGDSQALPGYISIYLQIMDPRGTTSSRW 134

Query:   157 DCFASYRLAIVNLSDESKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNDAV 216
             DCFASYRL+IVNL D+S TIH+DSWHRFSSKKKSHGWCDFT +S++ D K+G+LFNND++
Sbjct:   135 DCFASYRLSIVNLVDDSLTIHKDSWHRFSSKKKSHGWCDFTLNSSILDPKMGFLFNNDSL 194

Query:   217 LITADILILNESVSFMRDNNELQSPSMVSSSVVAGPVSDVLSGKFTWKVHNFSLFKEMIK 276
             LITADILILNESVSF RDNN  +  S+   + +AGP+ DVLSGKFTWKV+NFSLFK+MIK
Sbjct:   195 LITADILILNESVSFSRDNNN-EGQSLYKENSIAGPMPDVLSGKFTWKVNNFSLFKDMIK 253

Query:   277 TQKIMSPVFPAGECNLRISVYQSSVNGQEYLSMCLESKDMEKTVVSDRSCWCLFRMSVLN 336
             TQKIMSPVFPAGECNLRISVYQS VN QEY+SMCLESK+ EKT+VSDRSCWCLFRMS LN
Sbjct:   254 TQKIMSPVFPAGECNLRISVYQSVVNSQEYISMCLESKETEKTLVSDRSCWCLFRMSALN 313

Query:   337 QSPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSFHV 396
             Q PG  HMHRDSYGRFAADNKSGDNTSLGWNDYMKM++FV  ++GFL+DD AVFSTSFHV
Sbjct:   314 QKPGCTHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSEFVNPEAGFLLDDMAVFSTSFHV 373

Query:   397 IKEISSFSKNGGLIGWRSGNGARKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRR 456
             IKE SSF+KNGGLIG R+G GARKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKS+R
Sbjct:   374 IKEFSSFTKNGGLIGGRNGAGARKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSKR 433

Query:   457 FQIGNRDCRLIVYPRGQSQPPCHLSVFLEVMDSRNTSSDWSCFVSHRLSVVNQKMEEKSV 516
             FQIGNRDCRLIVYPRGQSQPPCHLSVFLEV DSR+ SSDWSCFVSHRLSVVNQ++EEKSV
Sbjct:   434 FQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRS-SSDWSCFVSHRLSVVNQRLEEKSV 492

Query:   517 TKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSIMQDFTDQ 576
             TKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETS  +++ + 
Sbjct:   493 TKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSATKEYVEA 552

Query:   577 DTESTNAGSQMDKIGKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFD 636
             D  STN+ S  D   K+SSFTWKVENFL+FKEIMETRKIFSKFFQAGGCELRIGVYESFD
Sbjct:   553 D--STNSVSPTDNSVKKSSFTWKVENFLAFKEIMETRKIFSKFFQAGGCELRIGVYESFD 610

Query:   637 TICIYLESDQSVGSDLDKNFWVRYRMAVVNQKNPTKTVWKESSICTKTWNNSVLQFMKVS 696
             TICIYLESDQS G+D+D NFWV+Y+M ++NQKNP K+VWKESSICTKTWNNSVLQFMKVS
Sbjct:   611 TICIYLESDQSAGTDVDNNFWVKYKMGILNQKNPAKSVWKESSICTKTWNNSVLQFMKVS 670

Query:   697 DMLEADAGFLMRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELXXXXXXXX 756
             DMLEADAGFL+RDTVVFVCEILDCCPWFEFSDLEVLAS+DDQDALTTDPDE+        
Sbjct:   671 DMLEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASDDDQDALTTDPDEIIDSEESEG 730

Query:   757 XXXXXXXXVRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAK 816
                      R+ LSRAGFHLT+G+NPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDP K
Sbjct:   731 ISGDEEDTFRDFLSRAGFHLTFGENPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPTK 790

Query:   817 AKRLLLPTKLSGSDGKKVAKTDESSPSVMNLLMGVKVLQQAXXXXXXXXMVECCQPSDGN 876
              KRLLLPTK+S +D  K+ K+DESSPS+MNLLMGVKVLQQA        MVECCQPS+  
Sbjct:   791 VKRLLLPTKISCNDRSKLIKSDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEEG 850

Query:   877 YYGDSSDANSKPPLDANGGARPLEADRENGASESAQFPLFERLDSGADDNSTTSAVQSSD 936
              + + S  +  P  D    A   E+ RE GA+E +Q  + ER  S  D   +TSAV SS+
Sbjct:   851 SHSEPSLLS--PKTDGCVAATSSESTRERGAAEPSQHLVDERFKSDTDATLSTSAVPSSE 908

Query:   937 LSGIDIAEKALPGQPIFPPETSAGGSLESASFRSKTKWPEQSAELLGLIVNSLRALDGAV 996
             ++GID+ EKAL  +P+ PP TSAG S + AS +SKTKWPEQS ELLGLIVNSL+ LD AV
Sbjct:   909 MNGIDLLEKALAIEPMSPPTTSAGQSSD-ASVQSKTKWPEQSEELLGLIVNSLKTLDAAV 967

Query:   997 PQGCPEPRRRPQSAQKISLVLDKAPKHLQPDLVALVPKLVEHSEHPLAADALIERLQKSD 1056
             PQGCPEPRRRP SAQKI+LVLD+APKHLQPDLV+LVPKLVEHSEHPLAA ALIERLQK +
Sbjct:   968 PQGCPEPRRRPHSAQKIALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERLQKPE 1027

Query:  1057 AEPALRMPVFVALSQLDFGSEVWERILLKSLELLTDSNDEPLAVTIDFIFKAASQCQHLP 1116
             AEPALR PV+ ALSQL+  SEVWE IL +S ELL+D N+E L   I F FK ASQCQHLP
Sbjct:  1028 AEPALREPVYNALSQLECDSEVWEDILSQSFELLSDLNEESLVAAIHFTFKTASQCQHLP 1087

Query:  1117 EAVRSVRVRLKNLGAEVSPCVLDFLSKTVNSWGDVAETILRXXXXXXXXXXNCSTMPSGL 1176
             EAV +VR RLK+LGA+VS CVLD+LSKTV+SW  +AE ILR          N +T+P G 
Sbjct:  1088 EAVNAVRERLKSLGADVSLCVLDYLSKTVHSWPGIAEMILRDINTDDSVGANFATLPCGP 1147

Query:  1177 FLFGENGPTSDSLHVMDEQAFRATRHFSDIYILIEMLSIPCIAVEAAQTFERAVARGTIV 1236
             FL GEN   S+   +M+E  F A R F D+YIL+EMLSI C+A EA+QTFERAVARG IV
Sbjct:  1148 FLIGENETASEMADLMEEHIFYANRQFFDVYILLEMLSISCLAEEASQTFERAVARGAIV 1207

Query:  1237 AQSIALVLERRLAQRLNFNPGFVAENFQHTDVVVEGE---QLIVQRDDFTCVLGLAETLA 1293
             AQ++A+VLE++  Q  N N      + +H D V+EGE   Q      +F  +L LAETL 
Sbjct:  1208 AQAVAMVLEKQRVQSPNLNATSGDASLKHQDPVLEGEASEQPATGGTEFRIILNLAETLT 1267

Query:  1294 LSRDIRVREFVKILYTILLKWYPDESYRGRMLKRLVDRATSTTESSRGXXXXXXXXXXXX 1353
              SRD +VR FVK+LYTIL KW+PD+ +R ++L+RLVDR TS T SS              
Sbjct:  1268 HSRDPQVRGFVKMLYTILFKWFPDQPFRVQILRRLVDRFTSPTSSSHDLDLELEILAILI 1327

Query:  1354 XXXXXXXRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVF 1413
                    RPVL+ML++V E AN+DRAALWHQL A+++E++R+++E+K EI +M +EK+  
Sbjct:  1328 FQEQEVARPVLAMLKKVVEHANIDRAALWHQLRANKEELVRLKEEKKIEIQSMTKEKSSI 1387

Query:  1414 SQKLAESEAAGNRLK 1428
             +QKL+ESEAA  RLK
Sbjct:  1388 TQKLSESEAANTRLK 1402
GO:0009507 "chloroplast" evidence=ISM
TAIR|locus:2059536 AT2G25330 "AT2G25330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089045 AT3G17380 "AT3G17380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085445 AT3G58210 "AT3G58210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098318 AT3G28220 "AT3G28220" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085435 AT3G58290 "AT3G58290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144118 UBP12 "ubiquitin-specific protease 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179744 AT5G26260 "AT5G26260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081501 UBP13 "ubiquitin-specific protease 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118465 AT4G09770 "AT4G09770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032679001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (1683 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1431
cd00121126 cd00121, MATH, MATH (meprin and TRAF-C homology) d 3e-28
cd00121126 cd00121, MATH, MATH (meprin and TRAF-C homology) d 1e-20
cd00121126 cd00121, MATH, MATH (meprin and TRAF-C homology) d 3e-16
cd00121126 cd00121, MATH, MATH (meprin and TRAF-C homology) d 3e-13
cd03775134 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 5e-12
COG50771089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 3e-10
pfam00917116 pfam00917, MATH, MATH domain 7e-09
cd03772137 cd03772, MATH_HAUSP, Herpesvirus-associated ubiqui 8e-09
pfam00917116 pfam00917, MATH, MATH domain 2e-08
cd11721 1161 cd11721, FANCD2, Fanconi anemia D2 protein 2e-08
cd03775134 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 5e-08
smart0006195 smart00061, MATH, meprin and TRAF homology 9e-08
smart0006195 smart00061, MATH, meprin and TRAF homology 3e-07
cd03774139 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP 2e-06
COG50771089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 5e-06
cd03776147 cd03776, MATH_TRAF6, Tumor Necrosis Factor Recepto 5e-06
cd03773132 cd03773, MATH_TRIM37, Tripartite motif containing 5e-06
cd03773132 cd03773, MATH_TRIM37, Tripartite motif containing 2e-05
cd03772137 cd03772, MATH_HAUSP, Herpesvirus-associated ubiqui 3e-04
smart0006195 smart00061, MATH, meprin and TRAF homology 9e-04
cd00270149 cd00270, MATH_TRAF_C, Tumor Necrosis Factor Recept 0.001
pfam01456143 pfam01456, Mucin, Mucin-like glycoprotein 0.001
>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information 
 Score =  110 bits (277), Expect = 3e-28
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 11/136 (8%)

Query: 426 GKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLE 485
           GK TW+I NF+ L+         G  I S  F++G    R+ +YP G  +   +LS++LE
Sbjct: 1   GKHTWKIVNFSELE---------GESIYSPPFEVGGYKWRIRIYPNGDGESGDYLSLYLE 51

Query: 486 VMDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQ 545
           +    +    WS      L +VNQ   +      +   +S+    WG+ +F++   L  +
Sbjct: 52  LDKGESDLEKWSVRAEFTLKLVNQNGGKSLSKSFTHVFFSEKGSGWGFPKFISWDDL--E 109

Query: 546 DSGFLVQDTVVFSAEV 561
           DS +LV D++    EV
Sbjct: 110 DSYYLVDDSLTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126
>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information
>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information
>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information
>gnl|CDD|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216189 pfam00917, MATH, MATH domain Back     alignment and domain information
>gnl|CDD|239741 cd03772, MATH_HAUSP, Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway Back     alignment and domain information
>gnl|CDD|216189 pfam00917, MATH, MATH domain Back     alignment and domain information
>gnl|CDD|212595 cd11721, FANCD2, Fanconi anemia D2 protein Back     alignment and domain information
>gnl|CDD|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast Back     alignment and domain information
>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology Back     alignment and domain information
>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology Back     alignment and domain information
>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239745 cd03776, MATH_TRAF6, Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2 Back     alignment and domain information
>gnl|CDD|239742 cd03773, MATH_TRIM37, Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>gnl|CDD|239742 cd03773, MATH_TRIM37, Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>gnl|CDD|239741 cd03772, MATH_HAUSP, Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway Back     alignment and domain information
>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology Back     alignment and domain information
>gnl|CDD|238168 cd00270, MATH_TRAF_C, Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems Back     alignment and domain information
>gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1431
PF14631 1426 FancD2: Fanconi anaemia protein FancD2 nuclease; P 100.0
KOG4712 1335 consensus Uncharacterized conserved protein [Funct 100.0
cd03772137 MATH_HAUSP Herpesvirus-associated ubiquitin-specif 99.89
cd03772137 MATH_HAUSP Herpesvirus-associated ubiquitin-specif 99.88
cd03775134 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p 99.87
cd03775134 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p 99.87
cd00270149 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)- 99.85
cd03780148 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A 99.85
cd03776147 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A 99.84
cd03777186 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A 99.84
cd03774139 MATH_SPOP Speckle-type POZ protein (SPOP) family, 99.84
cd03779147 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A 99.83
cd03781154 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A 99.83
cd03771167 MATH_Meprin Meprin family, MATH domain; Meprins ar 99.83
cd03778164 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A 99.82
cd03774139 MATH_SPOP Speckle-type POZ protein (SPOP) family, 99.82
cd03773132 MATH_TRIM37 Tripartite motif containing protein 37 99.81
cd03773132 MATH_TRIM37 Tripartite motif containing protein 37 99.81
cd00270149 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)- 99.81
cd03776147 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A 99.78
cd03780148 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A 99.76
cd03781154 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A 99.76
cd00121126 MATH MATH (meprin and TRAF-C homology) domain; an 99.74
cd00121126 MATH MATH (meprin and TRAF-C homology) domain; an 99.73
cd03777186 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A 99.73
cd03783167 MATH_Meprin_Alpha Meprin family, Alpha subunit, MA 99.72
cd03779147 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A 99.72
cd03782167 MATH_Meprin_Beta Meprin family, Beta subunit, MATH 99.7
cd03771167 MATH_Meprin Meprin family, MATH domain; Meprins ar 99.69
PF00917119 MATH: MATH domain; InterPro: IPR002083 Although ap 99.69
cd03778164 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A 99.68
PF00917119 MATH: MATH domain; InterPro: IPR002083 Although ap 99.68
smart0006195 MATH meprin and TRAF homology. 99.53
smart0006195 MATH meprin and TRAF homology. 99.51
COG50771089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 99.42
cd03782167 MATH_Meprin_Beta Meprin family, Beta subunit, MATH 99.32
COG50771089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 99.3
cd03783167 MATH_Meprin_Alpha Meprin family, Alpha subunit, MA 99.27
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 99.09
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 98.81
KOG18631093 consensus Ubiquitin carboxyl-terminal hydrolase [P 97.83
KOG18631093 consensus Ubiquitin carboxyl-terminal hydrolase [P 97.67
KOG0297391 consensus TNF receptor-associated factor [Signal t 96.49
KOG0297391 consensus TNF receptor-associated factor [Signal t 91.09
PF05086911 Dicty_REP: Dictyostelium (Slime Mold) REP protein; 82.01
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B Back     alignment and domain information 
Probab=100.00  E-value=5.1e-75  Score=758.96  Aligned_cols=428  Identities=30%  Similarity=0.492  Sum_probs=333.0

Q ss_pred             ChhHHHHHHHhhcceeecCCCCCCCc---hhHHHHhh-------cccHhHHHHHhhccccccCChhhHhhhcCCccccCC
Q 000550          760 DEEDIVRNLLSRAGFHLTYGDNPSQP---QVTLREKL-------LMDAGAIAGFLTGLRVYLDDPAKAKRLLLPTKLSGS  829 (1431)
Q Consensus       760 ~~~~~f~~~l~~ag~~l~~g~~~~~~---q~~~~~~~-------~~~~~~i~~f~~~l~~~~~~~~~~~~~llp~~~~~~  829 (1431)
                      .++++|.++|++||++|+.|++||++   ||.||+||       |.||.+|++|++||+.||+|+++||+|||||.+.++
T Consensus        43 ~~~~~f~~~L~~aG~~L~~g~~~~~l~~d~i~f~~kL~~~L~~~~~yp~~v~~F~~gl~~~i~~~~~~~~~Ll~~~~~~~  122 (1426)
T PF14631_consen   43 ENDSVFESVLKDAGVTLKTGEGPNVLSVDQIIFQKKLRKILRKSPSYPENVEEFLSGLESYIEDRDNFRNCLLPCCPSQN  122 (1426)
T ss_dssp             ----HHHHHHHHTTEE---TTS--EESS-TTHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHTTSHHHHHHHSSB-B----
T ss_pred             CCccHHHHHHHHcCeeeCCCCCCceeccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcCHHHHHHHhcCCCcccc
Confidence            46789999999999999999999988   99999998       789999999999999999999999999999998875


Q ss_pred             CCCccccCCCCchhHHHhhhchhhhHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCcc
Q 000550          830 DGKKVAKTDESSPSVMNLLMGVKVLQQAIIDLLLDIMVECCQPSDGNYYGDSSDANSKPPLDANGGARPLEADRENGASE  909 (1431)
Q Consensus       830 ~~~~~~~~~~~~~sl~~ll~gv~~lq~aii~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  909 (1431)
                      ++. .+...++++||||+||||+.||++||++||+||+||+..                                     
T Consensus       123 ~~~-~~~~~~~~~Slir~LL~i~~lQ~~~i~~LleKl~e~~~~-------------------------------------  164 (1426)
T PF14631_consen  123 AEA-ESIGQSSQESLIRLLLGIDFLQPALIEMLLEKLPEFAFE-------------------------------------  164 (1426)
T ss_dssp             -------------BHHHHHHHSTTTHHHHHHHHHHHHHHHHS--------------------------------------
T ss_pred             ccc-ccccccccHHHHHHHhCCccccHHHHHHHHHHHHHHHhc-------------------------------------
Confidence            443 355667899999999999999999999999999999876                                     


Q ss_pred             ccccccccccCCCCCCCCCcccccccCCCccccccccCCCCCCCCCCcCCCCCcccccccccCCCchhhHhhHhHHHhhh
Q 000550          910 SAQFPLFERLDSGADDNSTTSAVQSSDLSGIDIAEKALPGQPIFPPETSAGGSLESASFRSKTKWPEQSAELLGLIVNSL  989 (1431)
Q Consensus       910 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~livn~l  989 (1431)
                                              +++.+|++||                                       +||+|||
T Consensus       165 ------------------------~~~~~~~~~~---------------------------------------~Lil~Ql  181 (1426)
T PF14631_consen  165 ------------------------SSGSDGINIP---------------------------------------RLILNQL  181 (1426)
T ss_dssp             ---------------------------TT---HH---------------------------------------HHHHGGG
T ss_pred             ------------------------cccCCCCChH---------------------------------------HHHHHHh
Confidence                                    2234467888                                       9999999


Q ss_pred             hcccccCCCCCCCCCCCchhHHHHHHHhhcCCccccchhhhccccccCCCCchHHHHHHHHHhccCCCCCccchhhHhhh
Q 000550          990 RALDGAVPQGCPEPRRRPQSAQKISLVLDKAPKHLQPDLVALVPKLVEHSEHPLAADALIERLQKSDAEPALRMPVFVAL 1069 (1431)
Q Consensus       990 ~~ld~~v~~~~~~~r~~~~~~~k~~~~l~~ap~~lq~d~i~~~p~~~~~s~h~~~a~~l~~~l~~~~~~~~l~~p~~~al 1069 (1431)
                      ||||++|+.        .+++.||++||++||.++|+|||++||+|++||+|+.|+.+|.++|+++   +.|++||||||
T Consensus       182 rwLd~i~d~--------~~l~~kl~~~l~~ap~~lq~eiI~~LPeIl~ds~h~~v~~~L~~ll~~~---~~L~~~iLd~L  250 (1426)
T PF14631_consen  182 RWLDRIVDS--------EELTDKLFEVLSIAPVELQKEIISSLPEILDDSQHDEVVEELLELLQEN---PELTVPILDAL  250 (1426)
T ss_dssp             TT-S--SSH--------HHHHHHHHHHHHHS-TTTHHHHHHTHHHHS-GGGHHHHHHHHHHHHHH----STTHHHHHHHH
T ss_pred             hccccccCH--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcC---CchhhhHHHHH
Confidence            999999998        8999999999999999999999999999999999999999999999997   99999999999


Q ss_pred             cccccChHHHHHHHHHHHhhhcCCCCCchhhhHHHHhhccc------------------cccchHHHHHHHHHHHHhcCC
Q 000550         1070 SQLDFGSEVWERILLKSLELLTDSNDEPLAVTIDFIFKAAS------------------QCQHLPEAVRSVRVRLKNLGA 1131 (1431)
Q Consensus      1070 s~l~~~~~~~~~~~~~~~~~l~~~~~e~l~~~i~f~~~~~~------------------~~~~~~~~~~~~~~~l~~~g~ 1131 (1431)
                      |+|+|+++.+++||+++|+.|.+++.|+||++|+|||++++                  +|. +|..+++++.++|+.|.
T Consensus       251 s~L~Ls~~~l~~vr~~vl~~L~s~~~e~LP~lirFLL~s~t~~da~evI~~LR~~L~~~~~v-~~~~~~~s~~~~k~~~~  329 (1426)
T PF14631_consen  251 SNLNLSPELLEEVREKVLEKLSSVDLEDLPVLIRFLLQSITPSDAVEVISELRENLDFEQCV-LPSRIQASQRKLKNKGN  329 (1426)
T ss_dssp             HHS---HHHHHHHHHHHHHSTTSS-TTHHHHHHHHHHHS-SSTTHHHHHHHHHHHHH-----------------------
T ss_pred             hcCCCCHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHhCCcccHHHHHHHHHHHccccccc-cchhhcccccccccCcc
Confidence            99999999999999999999999999999999999999988                  455 66666677777777776


Q ss_pred             CCCh---------h---HHHHHHhhhccchhHHHHHHHhccCCCCCCCCCCCCCCcccccCCCCCCCCccchhhhhhhcc
Q 000550         1132 EVSP---------C---VLDFLSKTVNSWGDVAETILRDIDCDDDFGDNCSTMPSGLFLFGENGPTSDSLHVMDEQAFRA 1199 (1431)
Q Consensus      1132 ~~s~---------~---~ld~~~~~v~~~~~~~e~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1199 (1431)
                      +.++         |   +||+|+++|+++++++|||||.|++..++.+                                
T Consensus       330 ~~~~~~~~~s~~~~~~lil~~lks~lr~~k~l~eawiK~I~~~~~~~~--------------------------------  377 (1426)
T PF14631_consen  330 ASSSGNQENSSQDCEKLILDVLKSGLRFSKDLSEAWIKAIESLEDASD--------------------------------  377 (1426)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHGGGSTT--------------------------------
T ss_pred             cccccccccccccHHHHHHHHHHHHHHhccHHHHHHHHHHhcCCCccc--------------------------------
Confidence            6543         3   9999999999999999999999999998888                                


Q ss_pred             ccchhhHHHHHHHhcCCc-hHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcccCCCCcccccccccccccccccceec
Q 000550         1200 TRHFSDIYILIEMLSIPC-IAVEAAQTFERAVARGTIVAQSIALVLERRLAQRLNFNPGFVAENFQHTDVVVEGEQLIVQ 1278 (1431)
Q Consensus      1200 ~~~~~d~~~l~~~~s~~~-~~~~~~~~~er~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 1278 (1431)
                       |++.|+++|++||+++. .++.+++++.+.|+.|+|+++++         ++     +|     .        .|..|+
T Consensus       378 -hkv~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~g~it~~ll---------~~-----~f-----~--------~~~~vL  429 (1426)
T PF14631_consen  378 -HKVIDLWLLLILYSINEDNRKSIEKILKKKIKSGHITEQLL---------DQ-----TF-----K--------GHSEVL  429 (1426)
T ss_dssp             ---THHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT-S-HHHH---------HH-----HH-----H--------HHHHHH
T ss_pred             -cchHHHHHHHHHHcCCccchHHHHHHHHHHHHhCcccHHHH---------HH-----HH-----h--------hhHHHH
Confidence             99999999999999986 45889999999999999999999         54     44     3        445789


Q ss_pred             cchhhhHHHHHHHHhcCcCchhhhhHHHHHHHHhhhcCCCchHHHHHHHHHhhccCCCCCCccccchhHHHHHHHhhccc
Q 000550         1279 RDDFTCVLGLAETLALSRDIRVREFVKILYTILLKWYPDESYRGRMLKRLVDRATSTTESSRGVDLDLEILVILVCEEQE 1358 (1431)
Q Consensus      1279 ~~~f~~~l~la~~l~~s~~~~v~~f~~~~y~~~f~~~~~~~~~~~~~~~lv~~~~s~~~~~~~v~~~l~~l~~lv~~~~~ 1358 (1431)
                      +++|+++|.||+.|++|.|+.|++||++||+++|+.| |+|||||||++||+|+|||  ++.|||.+|+||..|+..++.
T Consensus       430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~f-ds~~qqeVv~~Lvthi~sg--~~~ev~~aL~vL~~L~~~~~~  506 (1426)
T PF14631_consen  430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEF-DSYCQQEVVGALVTHIGSG--NSQEVDAALDVLCELAEKNPS  506 (1426)
T ss_dssp             TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHhccHH
Confidence            9999999999999999999999999999999999999 9999999999999999999  999999999999999998885


Q ss_pred             chHHH
Q 000550         1359 IIRPV 1363 (1431)
Q Consensus      1359 ~~~~~ 1363 (1431)
                      ..+|-
T Consensus       507 ~l~~f  511 (1426)
T PF14631_consen  507 ELQPF  511 (1426)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            55553

>KOG4712 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway Back     alignment and domain information
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway Back     alignment and domain information
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast Back     alignment and domain information
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast Back     alignment and domain information
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems Back     alignment and domain information
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2 Back     alignment and domain information
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP Back     alignment and domain information
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1 Back     alignment and domain information
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces Back     alignment and domain information
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP Back     alignment and domain information
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems Back     alignment and domain information
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2 Back     alignment and domain information
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1 Back     alignment and domain information
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces Back     alignment and domain information
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain [] Back     alignment and domain information
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain [] Back     alignment and domain information
>smart00061 MATH meprin and TRAF homology Back     alignment and domain information
>smart00061 MATH meprin and TRAF homology Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1431
2f1x_A161 Crystal Structure Of The Traf-Like Domain Of HauspU 9e-07
2f1z_A522 Crystal Structure Of Hausp Length = 522 9e-07
2f1y_A159 Crystal Structure Of The Traf-Like Domain Of HauspU 1e-06
2f1w_A158 Crystal Structure Of The Traf-Like Domain Of HauspU 1e-06
1yy6_A155 The Crystal Strucure Of The N-Terminal Domain Of Ha 1e-06
2xxn_A143 Structure Of The Virf4-Hausp Traf Domain Complex Le 2e-06
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7 Bound To A P53 Peptide Length = 161 Back     alignment and structure 
Iteration: 1

 Score = 53.5 bits (127), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 428 FTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSV-FLEV 486
           F + +E F+RL + +    ++  C       + N   +++V PR     P   SV F   
Sbjct: 23  FQFTVERFSRLSESV----LSPPCF------VRNLPWKIMVMPRFYPDRPHQKSVGFFLQ 72
Query: 487 MDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQD 546
            ++ + S+ WSC     L ++N + +EKS ++   + +     DWG+  F+  + + D +
Sbjct: 73  CNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPE 132
Query: 547 SGFLVQDTVVFSAEVLI 563
            GF+  D V F  EV +
Sbjct: 133 KGFIDDDKVTF--EVFV 147
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7 Bound To A Mdm2 Peptide Length = 159 Back     alignment and structure
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7 Length = 158 Back     alignment and structure
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7 Complexed With An Ebna1 Peptide Length = 155 Back     alignment and structure
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex Length = 143 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1431
3s4w_B 1323 Protein FACD2, fanconi anemia group D2 protein hom 1e-46
3s4w_B 1323 Protein FACD2, fanconi anemia group D2 protein hom 1e-15
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 5e-39
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 4e-31
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 4e-20
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 1e-15
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 2e-29
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 8e-24
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 5e-18
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 4e-14
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 5e-22
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 2e-17
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 3e-09
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 6e-04
1lb6_A160 TNF receptor-associated factor 6; TRAF6-CD40 compl 6e-22
1lb6_A160 TNF receptor-associated factor 6; TRAF6-CD40 compl 4e-14
1lb6_A160 TNF receptor-associated factor 6; TRAF6-CD40 compl 6e-13
1lb6_A160 TNF receptor-associated factor 6; TRAF6-CD40 compl 2e-05
1d00_A168 Tumor necrosis factor receptor associated protein 4e-20
1d00_A168 Tumor necrosis factor receptor associated protein 1e-15
1d00_A168 Tumor necrosis factor receptor associated protein 1e-12
1d00_A168 Tumor necrosis factor receptor associated protein 2e-06
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 1e-19
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 1e-14
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 6e-12
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 9e-06
2gkw_A192 TNF receptor-associated factor 3; CD40, NF-KB sign 2e-19
2gkw_A192 TNF receptor-associated factor 3; CD40, NF-KB sign 1e-11
2gkw_A192 TNF receptor-associated factor 3; CD40, NF-KB sign 1e-11
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 5e-17
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 6e-11
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 7e-11
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 3e-13
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 1e-11
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 2e-09
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus} Length = 1323 Back     alignment and structure
 Score =  182 bits (463), Expect = 1e-46
 Identities = 71/408 (17%), Positives = 140/408 (34%), Gaps = 44/408 (10%)

Query: 963  LESASFRSKTKWPEQSAELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKISLVLDKAPK 1022
             E                +  LI+N L+ LD  V               ++  ++  AP 
Sbjct: 120  FEKVPQFLFESENRDGINMARLIINQLKWLDRIVD--------GKDLTAQMMQLISVAPV 171

Query: 1023 HLQPDLVALVPKLVEHSEHPLAADALIERLQKSDAEPALRMPVFVALSQLDFGSEVWERI 1082
            +LQ D +  +P+++  S+H      L E L +     +L +P+    S L        +I
Sbjct: 172  NLQHDFITSLPEILGDSQHANVGKELGELLVQ---NTSLTVPILDVFSSLRLDPNFLSKI 228

Query: 1083 LLKSLELLTDSNDEPLAVTIDFIFKAASQCQHLPEAVRSVRVRLKNLGAEVSPCVLDFLS 1142
                +  L+    E   V + F+  + +      E +  +R  L N+   + P  +    
Sbjct: 229  RQLVMGKLSSVRLEDFPVIVKFLLHSVTD-TTSLEVIAELRENL-NVQQFILPSRIQASQ 286

Query: 1143 KTVNSWGDVAETILRDIDCDDDFGDNCSTMPSGLFLFGENGPTSDSLHVMDEQAFRATRH 1202
              + S G  + +  ++    D        + S +               ++     A   
Sbjct: 287  SKLKSKGLASSSGNQENSDKDCIVLVFDVIKSAIRYEKTISEA--WFKAIERIESAAEHK 344

Query: 1203 FSDIYILIEMLSIPCIAVEAAQTFERAVARGTIVAQSIALVLERRLAQRLNFNPGFVAEN 1262
              D+ +L+ + S      +  +                   L R   Q        +   
Sbjct: 345  SLDVVMLLIIYSTSTQTKKGVEK------------------LLRNKIQSDCIQEQLLDSA 386

Query: 1263 FQHTDVVVEGEQLIVQRDDFTCVLGLAETLALSRDIRVREFVKILYTILLKWYPDESYRG 1322
            F    +V+        +D    +L LA+TL  S+D R+  F  +LY    K++ D   + 
Sbjct: 387  FSTHYLVL--------KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFF-DTYCQQ 437

Query: 1323 RMLKRLVDRATSTTESSRGVDLDLEILVILVCEEQEIIRPVLSMLREV 1370
             ++  LV    S TE+   VD  L++L+ L+      +R   + ++ +
Sbjct: 438  EVVGALVTHVCSGTEAE--VDTALDVLLELIVLNASAMRLNAAFVKGI 483
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus} Length = 1323 Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155 Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155 Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155 Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155 Back     alignment and structure
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145 Back     alignment and structure
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145 Back     alignment and structure
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145 Back     alignment and structure
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160 Back     alignment and structure
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160 Back     alignment and structure
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160 Back     alignment and structure
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160 Back     alignment and structure
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168 Back     alignment and structure
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168 Back     alignment and structure
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168 Back     alignment and structure
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168 Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192 Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192 Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192 Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192 Back     alignment and structure
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192 Back     alignment and structure
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192 Back     alignment and structure
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192 Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228 Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228 Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1431
d2cr2a1146 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H 3e-25
d2cr2a1146 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H 2e-22
d2cr2a1146 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H 8e-22
d2cr2a1146 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H 2e-14
d1czya1152 b.8.1.1 (A:350-501) TNF receptor associated factor 3e-23
d1czya1152 b.8.1.1 (A:350-501) TNF receptor associated factor 8e-19
d1czya1152 b.8.1.1 (A:350-501) TNF receptor associated factor 2e-16
d1czya1152 b.8.1.1 (A:350-501) TNF receptor associated factor 2e-10
d1lb6a_155 b.8.1.1 (A:) TNF receptor associated factor 6 (TRA 4e-22
d1lb6a_155 b.8.1.1 (A:) TNF receptor associated factor 6 (TRA 4e-18
d1lb6a_155 b.8.1.1 (A:) TNF receptor associated factor 6 (TRA 3e-15
d1lb6a_155 b.8.1.1 (A:) TNF receptor associated factor 6 (TRA 1e-11
d1l0aa1155 b.8.1.1 (A:350-504) TNF receptor associated factor 4e-22
d1l0aa1155 b.8.1.1 (A:350-504) TNF receptor associated factor 3e-16
d1l0aa1155 b.8.1.1 (A:350-504) TNF receptor associated factor 7e-16
d1l0aa1155 b.8.1.1 (A:350-504) TNF receptor associated factor 2e-07
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 3e-25
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 14/147 (9%)

Query: 426 GKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRD---CRLIVYPRGQSQ-PPCHLS 481
             + W I NF+  +      +  G  IKS  F  G  D     L V P+G  +    +LS
Sbjct: 5   FSYMWTINNFSFCR------EEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLS 58

Query: 482 VFLEVMDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTS 541
           ++L ++               + S++N K EE    +  +       KDWG+++F+    
Sbjct: 59  LYLLLVSCPK----SEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDF 114

Query: 542 LFDQDSGFLVQDTVVFSAEVLILKETS 568
           L D+ +G L  D +    EV +++++ 
Sbjct: 115 LLDEANGLLPDDKLTLFCEVSVVQDSV 141
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152 Back     information, alignment and structure
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152 Back     information, alignment and structure
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152 Back     information, alignment and structure
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152 Back     information, alignment and structure
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1431
d1czya1152 TNF receptor associated factor 2 (TRAF2) {Human (H 99.89
d1lb6a_155 TNF receptor associated factor 6 (TRAF6) {Human (H 99.89
d1czya1152 TNF receptor associated factor 2 (TRAF2) {Human (H 99.88
d1l0aa1155 TNF receptor associated factor 3 (TRAF3) {Human (H 99.88
d2cr2a1146 Speckle-type poz protein SPOP {Human (Homo sapiens 99.88
d1l0aa1155 TNF receptor associated factor 3 (TRAF3) {Human (H 99.87
d2cr2a1146 Speckle-type poz protein SPOP {Human (Homo sapiens 99.87
d1lb6a_155 TNF receptor associated factor 6 (TRAF6) {Human (H 99.85
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.3e-23  Score=179.58  Aligned_cols=138  Identities=14%  Similarity=0.233  Sum_probs=99.0

Q ss_pred             CCEEEEEECCCCCCCCCC---CCCCCCCCCEECC--CEEEEEEEEECCCC--CCCEEEEEEEECCCCCCCCCCCCEEEEE
Q ss_conf             768999991631110222---6571129933125--70399999976789--9634999999527776655898189999
Q 000550          258 SGKFTWKVHNFSLFKEMI---KTQKIMSPVFPAG--ECNLRISVYQSSVN--GQEYLSMCLESKDMEKTVVSDRSCWCLF  330 (1431)
Q Consensus       258 ~gsftwkI~NFS~lke~~---k~eki~Sp~F~vg--Gy~WrI~IYPnG~~--~~~yLSIyL~L~d~e~~~~~~wsv~a~f  330 (1431)
                      +|+|+|+|+|||.+++..   ++..++||.|+++  ||+|+|.+||+|.+  ..+|+|+||++.+++.+....|++++.|
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKV   81 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCE
T ss_pred             CCEEEEEECCCHHHHHHHHCCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEE
T ss_conf             97899999992898776542798568891988089982999999818999889988999999726776766665366678


Q ss_pred             EEEEEECCCCCCCEEE----CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf             9999718999984253----032233479989988878956210011104488884358908999999998
Q 000550          331 RMSVLNQSPGSNHMHR----DSYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSFHVI  397 (1431)
Q Consensus       331 tlsLLNQ~~g~~~~~k----~s~~rF~~~~~~~~n~s~G~~kFIs~seL~dp~sGYLvDDSLiIevdI~VI  397 (1431)
                      +|+|+||.+.......    .....|+++. ...+.+|||.+||++++|. +++|||+||+|+|+|+|+|.
T Consensus        82 ~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~G~~~fi~~~~L~-~~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          82 TLMLLDQNNREHVIDAFRPDVTSSSFQRPV-NDMNIASGCPLFCPVSKME-AKNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             EEEECCTTSSCCEEEEECCCTTSGGGSCCS-SSBCCCEEEEEEEETCCCC-CSTTTSCSSCEEEEEEECCT
T ss_pred             EEEEECCCCCCCCEEEECCCCCCCCCCCCC-CCCCCCCCHHHEEEHHHHC-CCCCCEECCEEEEEEEEEEC
T ss_conf             999974788854215512563422436777-5543662245588999944-14894849999999999934
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure